Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 248 of 344
Found at i:82417740 original size:6 final size:6
Alignment explanation
Indices: 82417722--82417760 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
82417712 GTACTTTGTG
* * *
82417722 TACTGC TACTGT TATTGT TACTGT TACTGT TACCGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
82417761 GGTGTATTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (6 bp):
TACTGT
Found at i:82417749 original size:18 final size:19
Alignment explanation
Indices: 82417717--82417753 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
82417707 ATGAGGTACT
82417717 TTGTGTACTGCTACTGTTA
1 TTGTGTACTGCTACTGTTA
*
82417736 TTGT-TACTGTTACTGTTA
1 TTGTGTACTGCTACTGTTA
82417754 CCGTTACGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (19 bp):
TTGTGTACTGCTACTGTTA
Found at i:82417891 original size:18 final size:18
Alignment explanation
Indices: 82417868--82417974 Score: 135
Period size: 18 Copynumber: 5.9 Consensus size: 18
82417858 TAAATAAAGG
*
82417868 TACTGAATAACTAACTGC
1 TACTGAATAACTGACTGC
82417886 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTGC
*
82417904 TACTGGATAACTGACTGC
1 TACTGAATAACTGACTGC
* *
82417922 TACTGAATAATTGACTGT
1 TACTGAATAACTGACTGC
* *
82417940 TACTGAATAATTTA-TCGC
1 TACTGAATAACTGACT-GC
*
82417958 TATTGAATAACTGACTG
1 TACTGAATAACTGACTG
82417975 TTAAAGAGTG
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
17 1 0.01
18 75 0.97
19 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33
Consensus pattern (18 bp):
TACTGAATAACTGACTGC
Found at i:82423311 original size:38 final size:37
Alignment explanation
Indices: 82423261--82423444 Score: 131
Period size: 38 Copynumber: 4.7 Consensus size: 37
82423251 ATAGTATTAT
*
82423261 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
82423298 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
82423338 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
82423380 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
*
82423418 ATATTAAAAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
82423445 TTTTTATTAA
Statistics
Matches: 114, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
37 27 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.04
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:82423329 original size:18 final size:18
Alignment explanation
Indices: 82423308--82423461 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
82423298 ATATTAAGAA
82423308 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
82423326 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
82423341 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
82423356 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
82423375 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
82423390 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
82423409 GAATATTTAATATTA-AAAA
1 TTTTA-TTAA-ATTATATAT
82423428 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
82423446 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
82423462 TTAATAATAA
Statistics
Matches: 100, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 38 0.38
19 11 0.11
20 5 0.05
21 3 0.03
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:82423382 original size:120 final size:120
Alignment explanation
Indices: 82423243--82423723 Score: 750
Period size: 120 Copynumber: 4.0 Consensus size: 120
82423233 ATTATTAATC
* * * *
82423243 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
* *
82423308 TTTTATTAAATTATATATTTTTATTA-AATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAATTATGTTAAAT
* * * * *
82423363 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAAAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
*
82423428 TTTTATTAAATTATATATTTTTATTA-AATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAATTATGTTAAAT
* * *
82423483 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
* *
82423548 TATTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATT
66 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAAT
* *
82423603 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
82423668 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
82423724 ATGATTAAAT
Statistics
Matches: 344, Mismatches: 15, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
120 337 0.98
121 7 0.02
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAAT
Found at i:82423565 original size:15 final size:13
Alignment explanation
Indices: 82423556--82423611 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 13
82423546 AATATTATTA
82423556 AATTATATATTTT
1 AATTATATATTTT
82423569 AATTATAATATATTT
1 AATTAT-ATAT-TTT
* *
82423584 AATAATAATTATGTT
1 AATTAT-A-TATTTT
82423599 AATT-TATATTTT
1 AATTATATATTTT
82423611 A
1 A
82423612 TAGTATCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
12 6 0.17
13 7 0.19
14 5 0.14
15 15 0.42
16 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
AATTATATATTTT
Found at i:82423581 original size:16 final size:16
Alignment explanation
Indices: 82423560--82423602 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
82423550 TTATTAAATT
82423560 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
82423576 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
82423591 AT-TATGTTAATT
1 ATATATTTTAATT
82423603 TATATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 16 0.70
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:82423701 original size:16 final size:16
Alignment explanation
Indices: 82423680--82423721 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
82423670 TTATTAAATT
*
82423680 ATATATTTTAATTATA
1 ATATATTTTAATAATA
82423696 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
82423711 AT-TATGTTTAA
1 ATATAT-TTTAA
82423722 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:82423706 original size:15 final size:15
Alignment explanation
Indices: 82423671--82423712 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
82423661 TTAAGAATTT
*
82423671 TATTAAATTAT-ATA
1 TATTTAATTATAATA
82423685 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
82423699 TATTTAATAATAAT
1 TATTTAATTATAAT
82423713 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:82423959 original size:16 final size:16
Alignment explanation
Indices: 82423938--82424005 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
82423928 GATTTGCTAT
82423938 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
82423954 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
82423970 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
82423986 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
82424002 TACA
1 TACA
82424006 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:82424989 original size:34 final size:34
Alignment explanation
Indices: 82424951--82425021 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
82424941 AAAACCTCCA
*
82424951 TAACAAGCACATTTTAATAAAATATGCTTTTAGG
1 TAACAAGCACATTTTAATAAAATATACTTTTAGG
82424985 TAACAAGCACATTTTAATAAAATATACTTTTAGG
1 TAACAAGCACATTTTAATAAAATATACTTTTAGG
82425019 TAA
1 TAA
82425022 TCTTACATCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (34 bp):
TAACAAGCACATTTTAATAAAATATACTTTTAGG
Found at i:82441043 original size:13 final size:13
Alignment explanation
Indices: 82441025--82441070 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
82441015 GAAGCACGCG
82441025 TAAAACATATCTT
1 TAAAACATATCTT
*
82441038 TAAAACATAACTT
1 TAAAACATATCTT
*
82441051 TAAAATATATCTT
1 TAAAACATATCTT
*
82441064 GAAAACA
1 TAAAACA
82441071 ATAACAGAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (13 bp):
TAAAACATATCTT
Found at i:82441060 original size:26 final size:27
Alignment explanation
Indices: 82441025--82441075 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
82441015 GAAGCACGCG
*
82441025 TAAAACATATCTTTAAAAC-ATAACTT
1 TAAAACATATCTTGAAAACAATAACTT
*
82441051 TAAAATATATCTTGAAAACAATAAC
1 TAAAACATATCTTGAAAACAATAAC
82441076 AGAACTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (27 bp):
TAAAACATATCTTGAAAACAATAACTT
Found at i:82443348 original size:41 final size:41
Alignment explanation
Indices: 82443291--82443444 Score: 211
Period size: 41 Copynumber: 3.8 Consensus size: 41
82443281 TAGGGGTTTA
82443291 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
82443332 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
82443373 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
82443413 AATCCGAGCTTGGTGTCGAAGGGCGTTTTGAG
1 AATCCGAGCTTGGTCTCGAAGGGC-TTTTGAG
82443445 TCAGCGCTAA
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 32 0.33
41 60 0.62
42 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:82457579 original size:43 final size:43
Alignment explanation
Indices: 82457531--82457666 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
82457521 CCCGGACGTA
* *
82457531 GTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAGG
1 GTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACACG
* * * *
82457574 GTCTTACATG-AAATCAGATAT-GATACCGATGTCCCAGACATG
1 GTCTTACATGTAATTCA-ATATCGATGCCTATGTCCCAGACACG
* * *
82457616 GTCTTATACGTAAATCTC-A-ATCGAGGCCTATGTCCCAGACACG
1 GTCTTACATGT-AAT-TCAATATCGATGCCTATGTCCCAGACACG
*
82457659 TTCTTACA
1 GTCTTACA
82457667 CGATGTCTCT
Statistics
Matches: 74, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 32 0.43
43 38 0.51
44 2 0.03
45 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (43 bp):
GTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACACG
Found at i:82460183 original size:30 final size:30
Alignment explanation
Indices: 82460147--82460216 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
82460137 GCAACAATCT
82460147 CAAAAACATAGAAATTATCAAAAATCAAAG
1 CAAAAACATAGAAATTATCAAAAATCAAAG
82460177 CAAAAACATAGAAATTATCAAAAATCAAAG
1 CAAAAACATAGAAATTATCAAAAATCAAAG
82460207 CAAAAACATA
1 CAAAAACATA
82460217 CCTCAATCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.64, C:0.14, G:0.06, T:0.16
Consensus pattern (30 bp):
CAAAAACATAGAAATTATCAAAAATCAAAG
Found at i:82480249 original size:16 final size:16
Alignment explanation
Indices: 82480228--82480258 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82480218 AACCCAACCC
*
82480228 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
82480244 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
82480259 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:82481048 original size:27 final size:27
Alignment explanation
Indices: 82481013--82481090 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
82481003 GGGCATATTC
82481013 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACCATATAGGGGTATTACG
* *
82481040 GTCACTTTACCCA-ACAGGGGCT-TTACG
1 GTCATTTTA-CCATATAGGGG-TATTACG
*
82481067 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-TAGGGGTATT
82481091 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
26 4 0.10
27 33 0.80
28 4 0.10
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATATAGGGGTATTACG
Found at i:82481161 original size:27 final size:27
Alignment explanation
Indices: 82481131--82481235 Score: 99
Period size: 27 Copynumber: 3.9 Consensus size: 27
82481121 GTAAATCTAC
82481131 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
82481158 AAACCAATGGTATTTCTA-TAATTTTGT
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * **
82481185 AAATC-AGAGGTATTT-TGATAATTTTAC
1 AAACCAAG-GGTATTTCAG-TAATTTTGT
**
82481212 AAACTGAGGGTATTTCAGTAATTT
1 AAACCAAGGGTATTTCAGTAATTT
82481236 CACAAACTAG
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
26 1 0.02
27 58 0.92
28 4 0.06
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:82481240 original size:27 final size:26
Alignment explanation
Indices: 82481203--82481329 Score: 98
Period size: 27 Copynumber: 4.8 Consensus size: 26
82481193 GGTATTTTGA
*
82481203 TAATTTTACAAACTGAGGGTATTTCAG
1 TAATTTCACAAACT-AGGGTATTTCAG
*
82481230 TAATTTCACAAACTAGTGGTATTT-GG
1 TAATTTCACAAACTAG-GGTATTTCAG
* **
82481256 TAATTTTACAAACTAGGGTTATTTTGG
1 TAATTTCACAAACTAGGG-TATTTCAG
**
82481283 TAA-TTCTACCCTA-TAGGGGTATTTCAG
1 TAATTTC-A-CAAACTA-GGGTATTTCAG
* *
82481310 TAATTTCACAATCGAGGGTA
1 TAATTTCACAAACTAGGGTA
82481330 AAACGGTAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
25 2 0.03
26 31 0.39
27 39 0.49
28 8 0.10
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.38
Consensus pattern (26 bp):
TAATTTCACAAACTAGGGTATTTCAG
Found at i:82481266 original size:26 final size:26
Alignment explanation
Indices: 82481193--82481287 Score: 120
Period size: 27 Copynumber: 3.6 Consensus size: 26
82481183 GTAAATCAGA
*
82481193 GGTATTTTGATAATTTTACAAACTGAG
1 GGTATTTTGGTAATTTTACAAACT-AG
** *
82481220 GGTATTTCAGTAATTTCACAAACTAG
1 GGTATTTTGGTAATTTTACAAACTAG
82481246 TGGTA-TTTGGTAATTTTACAAACTAG
1 -GGTATTTTGGTAATTTTACAAACTAG
82481272 GGTTATTTTGGTAATT
1 GG-TATTTTGGTAATT
82481288 CTACCCTATA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.03
26 22 0.38
27 34 0.59
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACTAG
Found at i:82481349 original size:27 final size:27
Alignment explanation
Indices: 82481319--82481383 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
82481309 GTAATTTCAC
* * *
82481319 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * *
82481346 AATCGATGGTAAAATAGTGATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
82481373 AATCGAGGGTA
1 AATCGAGGGTA
82481384 CTTTGGTAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:82483466 original size:31 final size:31
Alignment explanation
Indices: 82483428--82483491 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
82483418 CCTTTTCATA
82483428 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
82483459 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
82483490 TT
1 TT
82483492 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:82483744 original size:22 final size:23
Alignment explanation
Indices: 82483705--82483752 Score: 89
Period size: 22 Copynumber: 2.1 Consensus size: 23
82483695 CCTAGCCTCT
82483705 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
82483728 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
82483750 TTT
1 TTT
82483753 TACACTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 15 0.60
23 10 0.40
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:82483754 original size:23 final size:24
Alignment explanation
Indices: 82483698--82483754 Score: 91
Period size: 23 Copynumber: 2.4 Consensus size: 24
82483688 CAAGAGGCCT
82483698 AGCCTCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATA
82483723 AGCCC-TTTAATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
82483745 AGCCCTTTTA
1 AGCCCTTTTA
82483755 CACTTCCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
22 12 0.39
23 14 0.45
24 1 0.03
25 4 0.13
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:82483868 original size:20 final size:20
Alignment explanation
Indices: 82483804--82483862 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
82483794 TATGATTACA
82483804 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
82483824 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
* *
82483844 TCATGCGCATGTCATACAT
1 TCATGTGCATATCATACAT
82483863 ACCATGTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:82497719 original size:41 final size:41
Alignment explanation
Indices: 82497662--82497811 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
82497652 TCGGGGTTTA
*
82497662 AATCCGAGGTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
82497703 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
82497744 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
82497784 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
82497812 TGAGTCAGCG
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 32 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:82500292 original size:23 final size:23
Alignment explanation
Indices: 82500249--82500293 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
82500239 GAAAAGAACT
* *
82500249 GAAAAGAAATCTAAAGCCTAAAA
1 GAAAAGAAAACTAAAGACTAAAA
82500272 GAAAAGAAAACTAGAA-ACTAAA
1 GAAAAGAAAACTA-AAGACTAAA
82500294 TTATAAGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.64, C:0.11, G:0.13, T:0.11
Consensus pattern (23 bp):
GAAAAGAAAACTAAAGACTAAAA
Found at i:82504443 original size:26 final size:26
Alignment explanation
Indices: 82504414--82504521 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82504404 TGGTACAAAT
82504414 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82504440 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82504466 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82504492 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82504518 TGAT
1 TGAT
82504522 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82505825 original size:28 final size:26
Alignment explanation
Indices: 82505783--82505857 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
82505773 AAAAGTAGCT
* * *
82505783 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
*
82505811 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
82505837 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
82505858 GGTTACTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:82506072 original size:27 final size:27
Alignment explanation
Indices: 82505963--82506094 Score: 117
Period size: 27 Copynumber: 4.9 Consensus size: 27
82505953 GGAAGCGTCT
* * * *
82505963 TGGTGGCTATGCCACAATTTATATAATC
1 TGGTGGCTCTGCCACAATATCTGT-ATC
* *
82505991 TGGTGGCTCTGCCACATATATTTGT-CC
1 TGGTGGCTCTGCCACA-ATATCTGTATC
*
82506018 TGGTGGCTATGCCACAATTATCTG-ATC
1 TGGTGGCTCTGCCACAA-TATCTGTATC
*
82506045 TGGTGGCTCTGCCACAATATCGGTATC
1 TGGTGGCTCTGCCACAATATCTGTATC
* *
82506072 TGGTGACT-TCCTCACAATATCTG
1 TGGTGGCTCTGC-CACAATATCTG
82506095 GCAGCCTCAC
Statistics
Matches: 86, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
26 8 0.09
27 58 0.67
28 15 0.17
29 5 0.06
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATATCTGTATC
Found at i:82506076 original size:54 final size:55
Alignment explanation
Indices: 82505963--82506068 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 55
82505953 GGAAGCGTCT
**
82505963 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATTTGTCC
1 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATCGGTCC
* *
82506018 TGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACA-ATATCGGT
1 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATCGGT
82506069 ATCTGGTGAC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
53 6 0.13
54 24 0.51
55 17 0.36
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (55 bp):
TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATCGGTCC
Found at i:82509955 original size:85 final size:85
Alignment explanation
Indices: 82509812--82509990 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
82509802 GGCCGGCCAT
*
82509812 GAGCATAGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
82509877 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
82509897 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
82509962 GTAAGGGTTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
82509982 GGGCATGGG
1 GAGCATGGG
82509991 CAATAAAATA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:82512224 original size:47 final size:47
Alignment explanation
Indices: 82512170--82512556 Score: 549
Period size: 47 Copynumber: 8.1 Consensus size: 47
82512160 TTAGGATTTT
* *
82512170 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
82512217 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
82512268 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
82512315 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
82512362 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
82512413 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
82512460 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
82512507 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
82512554 ATG
1 ATG
82512557 CGAAACGTGT
Statistics
Matches: 308, Mismatches: 24, Indels: 16
0.89 0.07 0.05
Matches are distributed among these distances:
47 218 0.71
49 4 0.01
51 86 0.28
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:82512281 original size:98 final size:94
Alignment explanation
Indices: 82512170--82512556 Score: 533
Period size: 98 Copynumber: 4.0 Consensus size: 94
82512160 TTAGGATTTT
* *
82512170 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
*
82512235 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATACATATGTGTGATAAGGCCGAATGGCCA
* * *
82512268 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
82512333 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TACATATGTGTGATAAGGCCGAATGGCCA
**
82512362 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
82512427 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATACATATGTGTGATAAGGCCGAATGGCCA
* *
82512460 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
82512525 TGA-ATATATGTGGTAAGGCCGAATGGCTA
66 T-ACATATGTGTGATAAGGCCGAATGGCCA
82512554 ATG
1 ATG
82512557 CGAAACGTGT
Statistics
Matches: 264, Mismatches: 20, Indels: 14
0.89 0.07 0.05
Matches are distributed among these distances:
94 113 0.43
96 3 0.01
98 148 0.56
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TACATATGTGTGATAAGGCCGAATGGCCA
Found at i:82512335 original size:145 final size:145
Alignment explanation
Indices: 82512170--82512556 Score: 674
Period size: 145 Copynumber: 2.7 Consensus size: 145
82512160 TTAGGATTTT
82512170 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
82512235 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
82512300 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
*
82512315 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
82512380 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
82512445 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* * * * *
82512460 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
82512525 TG-A-ATATATGTG-G-TAAGGCCGAATGGCTAATG
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATG
82512557 CGAAACGTGT
Statistics
Matches: 233, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
141 18 0.08
142 1 0.00
143 9 0.04
144 1 0.00
145 204 0.88
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (145 bp):
ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
AAGGCCGAATGGCCA
Found at i:82512417 original size:24 final size:24
Alignment explanation
Indices: 82512389--82512464 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
82512379 CCGTATATAT
82512389 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
82512413 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
82512436 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
82512460 ATGTG
1 ATGTG
82512465 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:82512947 original size:37 final size:37
Alignment explanation
Indices: 82512765--82512946 Score: 310
Period size: 37 Copynumber: 4.9 Consensus size: 37
82512755 GGAAATATAT
*
82512765 TCCGGGTAAGACCCGACGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82512802 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82512839 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
82512876 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
82512913 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
82512947 TCGTCTGAGC
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 138 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82516231 original size:17 final size:17
Alignment explanation
Indices: 82516211--82516245 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
82516201 CGAGGAGGAA
*
82516211 ATTTCTTTATGGAGGGT
1 ATTTCTTTAAGGAGGGT
82516228 ATTTCTTTAAGGAGGGT
1 ATTTCTTTAAGGAGGGT
82516245 A
1 A
82516246 GAGTTGTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.29, T:0.43
Consensus pattern (17 bp):
ATTTCTTTAAGGAGGGT
Found at i:82526981 original size:37 final size:35
Alignment explanation
Indices: 82526929--82526998 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 35
82526919 AATCGGGGTT
82526929 AAATCCGAGGTTGGTCTCGAAGGGGCTTTGAGCCAGTGC
1 AAATCCGAGGTTGGTC-CGAA---GCTTTGAGCCAGTGC
82526968 AAAT-CGA-GTTGGTCCGAAGCTTTGAGCCAGT
1 AAATCCGAGGTTGGTCCGAAGCTTTGAGCCAGT
82526999 AAACCGAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
33 13 0.42
36 4 0.13
37 7 0.23
38 3 0.10
39 4 0.13
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (35 bp):
AAATCCGAGGTTGGTCCGAAGCTTTGAGCCAGTGC
Found at i:82533465 original size:25 final size:24
Alignment explanation
Indices: 82533427--82533528 Score: 136
Period size: 25 Copynumber: 4.2 Consensus size: 24
82533417 ATGGTACAAT
*
82533427 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAAT-GGTTAGGTAAATGTCCA
*
82533452 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAAT-GTCCA
82533478 TGATAATGGTTAGGT-AATGTCCA
1 TGATAATGGTTAGGTAAATGTCCA
82533501 T-ATAATGGTTTAGGTAAATGTCCA
1 TGATAATGG-TTAGGTAAATGTCCA
82533525 TGAT
1 TGAT
82533529 GGCTTCATGT
Statistics
Matches: 69, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.10
23 11 0.16
24 14 0.20
25 25 0.36
26 12 0.17
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (24 bp):
TGATAATGGTTAGGTAAATGTCCA
Found at i:82533514 original size:48 final size:50
Alignment explanation
Indices: 82533427--82533528 Score: 147
Period size: 48 Copynumber: 2.1 Consensus size: 50
82533417 ATGGTACAAT
* *
82533427 TGATAATGGGTTAGGTAAATGTTCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTCCATGATAATGGATTAGGTAAAT-GTCCA
*
82533478 TGATAAT-GGTTAGGT-AATGTCCAT-ATAATGGTTTAGGTAAATGTCCA
1 TGATAATGGGTTAGGTAAATGTCCATGATAATGGATTAGGTAAATGTCCA
82533525 TGAT
1 TGAT
82533529 GGCTTCATGT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
47 8 0.17
48 17 0.35
49 8 0.17
50 8 0.17
51 7 0.15
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (50 bp):
TGATAATGGGTTAGGTAAATGTCCATGATAATGGATTAGGTAAATGTCCA
Found at i:82535033 original size:27 final size:27
Alignment explanation
Indices: 82534946--82535058 Score: 117
Period size: 27 Copynumber: 4.2 Consensus size: 27
82534936 GGAAGCGTCT
* *
82534946 TGGTGGCTATGCCACAATTTATATAATC
1 TGGTGGCTATGCCACAA-TTATCTGATC
*
82534974 TGGTGGCTCTGCCAC-ATATAT-TG-TCC
1 TGGTGGCTATGCCACAAT-TATCTGAT-C
82535000 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTATGCCACAATTATCTGATC
* *
82535027 TGGTGGCTCTGCCACAA-TATCGGTATC
1 TGGTGGCTATGCCACAATTATCTG-ATC
82535054 TGGTG
1 TGGTG
82535059 ACTTCCTCAC
Statistics
Matches: 74, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
25 1 0.01
26 25 0.34
27 33 0.45
28 15 0.20
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (27 bp):
TGGTGGCTATGCCACAATTATCTGATC
Found at i:82535042 original size:53 final size:53
Alignment explanation
Indices: 82534946--82535046 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 53
82534936 GGAAGCGTCT
82534946 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATTGTCC
1 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACA-ATATTGTCC
* *
82535000 TGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACAATAT
1 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACAATAT
82535047 CGGTATCTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 4 0.09
53 24 0.53
54 17 0.38
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (53 bp):
TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACAATATTGTCC
Found at i:82535075 original size:53 final size:53
Alignment explanation
Indices: 82534946--82535076 Score: 133
Period size: 53 Copynumber: 2.5 Consensus size: 53
82534936 GGAAGCGTCT
* * * * *
82534946 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATTGTCC
1 TGGTGACTATCCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATGGTCC
* * *
82535000 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCGGTATC
1 TGGTGACTATCCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT-GGT-CC
82535054 TGGTGACT-TCCTCACAA-TATCTG
1 TGGTGACTATCC-CACAATTATCTG
82535077 GCAGCCTCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
52 4 0.06
53 34 0.50
54 30 0.44
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (53 bp):
TGGTGACTATCCCACAATTATCTGATCTGGTGGCTCTGCCACATATATGGTCC
Found at i:82538919 original size:44 final size:44
Alignment explanation
Indices: 82538788--82538919 Score: 100
Period size: 39 Copynumber: 3.1 Consensus size: 44
82538778 CATGAGCATA
82538788 GGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGG
1 GGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTT-G
** * * * * *
82538833 GGTAGTG-CATTATG-TAAGGATTAATAA-A----ATAAAGA-GCATG
1 GGT-G-GACAAGATGTTATGG-CTAAAAACATGTCATAAACATG-TTG
82538873 GGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTG
1 GGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTG
82538917 GGT
1 GGT
82538920 AGTGCATTAT
Statistics
Matches: 61, Mismatches: 14, Indels: 25
0.61 0.14 0.25
Matches are distributed among these distances:
38 1 0.02
39 11 0.18
40 10 0.16
41 7 0.11
44 11 0.18
45 9 0.15
46 11 0.18
47 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.27
Consensus pattern (44 bp):
GGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTG
Found at i:82541184 original size:47 final size:47
Alignment explanation
Indices: 82541133--82541506 Score: 537
Period size: 47 Copynumber: 8.1 Consensus size: 47
82541123 TTAGGATTTT
* *
82541133 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* **
82541180 ATGTGATGAATGTGAACCCGTATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--CATGCATATGTGTGATAAGGCCGAATGGCCA
*
82541229 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
82541276 CTGT-ATG-AT-TGAA-ATGC-TA--TGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
82541316 ATGTGATGAATGTGAACATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
82541363 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
82541410 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
82541457 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
82541504 ATG
1 ATG
82541507 CGAAACGTGT
Statistics
Matches: 295, Mismatches: 23, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
40 24 0.08
41 3 0.01
42 4 0.01
43 8 0.03
44 6 0.02
45 4 0.01
46 3 0.01
47 200 0.68
49 43 0.15
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:82541401 original size:134 final size:139
Alignment explanation
Indices: 82541133--82541506 Score: 573
Period size: 134 Copynumber: 2.7 Consensus size: 139
82541123 TTAGGATTTT
* *
82541133 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGC--ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
*
82541198 CGTATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAA
62 CATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAA
82541263 GGCCGAATGGCCA
127 GGCCGAATGGCCA
*
82541276 CTGT-ATG-AT-TGAA-ATGC-TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATA
1 ATGTGATGAATGTGAACATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATA
82541336 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCC
66 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCC
82541401 GAATGGCCA
131 GAATGGCCA
*
82541410 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGC--ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
82541475 TGAATATATGTG-G-TAAGGCCGAATGGCTAATG
64 T--ATATATGTGTGATAAGGCCGAATGGCCAATG
82541507 CGAAACGTGT
Statistics
Matches: 216, Mismatches: 6, Indels: 20
0.89 0.02 0.08
Matches are distributed among these distances:
134 80 0.37
135 3 0.01
136 40 0.19
137 4 0.02
138 4 0.02
139 4 0.02
140 4 0.02
141 61 0.28
142 4 0.02
143 12 0.06
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (139 bp):
ATGTGATGAATGTGAACATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATA
TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCC
GAATGGCCA
Found at i:82541577 original size:141 final size:139
Alignment explanation
Indices: 82541133--82541563 Score: 492
Period size: 134 Copynumber: 3.1 Consensus size: 139
82541123 TTAGGATTTT
* * * *
82541133 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGT-AACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
* *
82541198 CGTATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAA
63 CATATATATGTGTGATAAGGCCGAATGGCCAATGCGA-GAATGTGAACATGCGTATGTGTGATAA
* *
82541263 GGCCGAATGGCCA
127 AGCCAAATGGCCA
* * *
82541276 CTGT-ATGATTG-AA-ATGC---TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 ATGTGATGAATGTAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* *
82541335 ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGC
66 ATATATGTGTGATAAGGCCGAATGGCCAATGCGA-GAATGTGAACATGCGTATGTGTGATAAAGC
*
82541400 CGAATGGCCA
130 CAAATGGCCA
82541410 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGT-AACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
82541475 TGAATATATGTG-G-TAAGGCCGAATGGCTAATGCGA-AACGTGTATAAGATG-GATATGTG-G-
65 T--ATATATGTGTGATAAGGCCGAATGGCCAATGCGAGAA--TGT-GAACATGCG-TATGTGTGA
*
82541534 TAAAGCCAAATGGCTA
124 TAAAGCCAAATGGCCA
82541550 ATGTGA-GATATGTA
1 ATGTGATGA-ATGTA
82541564 CGGGATGTGT
Statistics
Matches: 259, Mismatches: 15, Indels: 32
0.85 0.05 0.10
Matches are distributed among these distances:
134 80 0.31
135 6 0.02
136 38 0.15
137 2 0.01
138 4 0.02
139 9 0.03
140 25 0.10
141 66 0.25
142 17 0.07
143 12 0.05
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (139 bp):
ATGTGATGAATGTAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
ATATATGTGTGATAAGGCCGAATGGCCAATGCGAGAATGTGAACATGCGTATGTGTGATAAAGCC
AAATGGCCA
Found at i:82541896 original size:37 final size:37
Alignment explanation
Indices: 82541714--82541895 Score: 310
Period size: 37 Copynumber: 4.9 Consensus size: 37
82541704 GGAAATATAT
*
82541714 TCCGGGTAAGACCCGACGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82541751 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82541788 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
82541825 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
82541862 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
82541896 TCGTCTGAGC
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 138 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82545194 original size:17 final size:17
Alignment explanation
Indices: 82545174--82545208 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
82545164 CGAGGAGGAA
*
82545174 ATTTCTTTATGGAGGGT
1 ATTTCTTTAAGGAGGGT
82545191 ATTTCTTTAAGGAGGGT
1 ATTTCTTTAAGGAGGGT
82545208 A
1 A
82545209 GAGTTGTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.29, T:0.43
Consensus pattern (17 bp):
ATTTCTTTAAGGAGGGT
Found at i:82545564 original size:26 final size:26
Alignment explanation
Indices: 82545535--82545642 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82545525 TGGTACAAAT
82545535 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
82545561 TGATAAAGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82545587 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82545613 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82545639 TGAT
1 TGAT
82545643 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82545956 original size:26 final size:26
Alignment explanation
Indices: 82545927--82546034 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82545917 TGGTACAAAT
82545927 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82545953 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82545979 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82546005 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82546031 TGAT
1 TGAT
82546035 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82546075 original size:392 final size:392
Alignment explanation
Indices: 82545351--82546136 Score: 1545
Period size: 392 Copynumber: 2.0 Consensus size: 392
82545341 ATGGGTGAAA
82545351 TTATGAAAAAAGACCTATGTGAAAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATA
1 TTATGAAAAAAGACCTATGTGAAAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATA
82545416 AATAGAAGTGCAAAAAAAGAGGATTTCTATGACAAACCTCCCATTTTACATGAAGTGTCCAGCCA
66 AATAGAAGTGCAAAAAAAGAGGATTTCTATGACAAACCTCCCATTTTACATGAAGTGTCCAGCCA
82545481 TCATGTTATTGTAGACAATATGAGCACTTGATATCCATAATTCATGGTACAAATTGATAATGGGT
131 TCATGTTATTGTAGACAATATGAGCACTTGATATCCATAATTCATGGTACAAATTGATAATGGGT
82545546 TAGGTAAATGTTCCATGATAAAGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTC
196 TAGGTAAATGTTCCATGATAAAGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTC
82545611 CATGATAATGGTTTAGGTAAATGTTCCATGATGGGCATTTCATGTCTTTTGTATTAAAGAATTAA
261 CATGATAATGGTTTAGGTAAATGTTCCATGATGGGCATTTCATGTCTTTTGTATTAAAGAATTAA
82545676 ATGGATGAAATATGAAATTTTCTTAAAAGAAAAAGGGGTGAAAAGAACAAAATTTTGTCCATCTT
326 ATGGATGAAATATGAAATTTTCTTAAAAGAAAAAGGGGTGAAAAGAACAAAATTTTGTCCATCTT
82545741 TG
391 TG
*
82545743 TTATGAAATAAGACCTATGTGAAAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATA
1 TTATGAAAAAAGACCTATGTGAAAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATA
*
82545808 AATAGAAGTGCAAAAAAAGAGGATTTGTATGACAAACCTCCCATTTTACATGAAGTGTCCAGCCA
66 AATAGAAGTGCAAAAAAAGAGGATTTCTATGACAAACCTCCCATTTTACATGAAGTGTCCAGCCA
82545873 TCATGTTATTGTAGACAATATGAGCACTTGATATCCATAATTCATGGTACAAATTGATAATGGGT
131 TCATGTTATTGTAGACAATATGAGCACTTGATATCCATAATTCATGGTACAAATTGATAATGGGT
*
82545938 TAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTC
196 TAGGTAAATGTTCCATGATAAAGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTC
82546003 CATGATAATGGTTTAGGTAAATGTTCCATGATGGGCATTTCATGTCTTTTGTATTAAAGAATTAA
261 CATGATAATGGTTTAGGTAAATGTTCCATGATGGGCATTTCATGTCTTTTGTATTAAAGAATTAA
82546068 ATGGATGAAATATGAAATTTTCTTAAAAGAAAAAGGGGTGAAAAGAACAAAATTTTGTCCATCTT
326 ATGGATGAAATATGAAATTTTCTTAAAAGAAAAAGGGGTGAAAAGAACAAAATTTTGTCCATCTT
82546133 TG
391 TG
82546135 TT
1 TT
82546137 CATCATAGCC
Statistics
Matches: 391, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
392 391 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (392 bp):
TTATGAAAAAAGACCTATGTGAAAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATA
AATAGAAGTGCAAAAAAAGAGGATTTCTATGACAAACCTCCCATTTTACATGAAGTGTCCAGCCA
TCATGTTATTGTAGACAATATGAGCACTTGATATCCATAATTCATGGTACAAATTGATAATGGGT
TAGGTAAATGTTCCATGATAAAGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTC
CATGATAATGGTTTAGGTAAATGTTCCATGATGGGCATTTCATGTCTTTTGTATTAAAGAATTAA
ATGGATGAAATATGAAATTTTCTTAAAAGAAAAAGGGGTGAAAAGAACAAAATTTTGTCCATCTT
TG
Found at i:82547338 original size:28 final size:26
Alignment explanation
Indices: 82547296--82547370 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
82547286 AAAAGTAGCT
* * *
82547296 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
82547324 AAATTACTGTTATACTCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
* *
82547350 AAATTACCGTTATACCTCTAG
1 AAATTACTGTTATACCCCTAG
82547371 GGTTACTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 21 0.54
27 1 0.03
28 17 0.44
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:82547565 original size:54 final size:53
Alignment explanation
Indices: 82547472--82547616 Score: 193
Period size: 54 Copynumber: 2.7 Consensus size: 53
82547462 TGGAGGAAGC
* *
82547472 GTCCTGGTGGTTATGTCC-CAATTTATCTAATCTGATGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATG-CCACAA-TTATCT-ATCTGGTGGCTCTGCCACATATATCT
82547527 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCT-ATCTGGTGGCTCTGCCACATATATCT
* * *
82547581 GTTCTGGTGGCTCTGCCACAATATTTCTATCTGGTG
1 GTCCTGGTGGCTATGCCACAAT-TATCTATCTGGTG
82547617 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
54 61 0.74
55 21 0.26
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATTATCTATCTGGTGGCTCTGCCACATATATCT
Found at i:82547613 original size:27 final size:27
Alignment explanation
Indices: 82547495--82547616 Score: 151
Period size: 27 Copynumber: 4.5 Consensus size: 27
82547485 TGTCCCAATT
* *
82547495 TATCTAATCTGATGGCTCTGCCACATA
1 TATCTGATCTGGTGGCTCTGCCACATA
*
82547522 TATCTG-TCCTGGTGGCTATGCCACA-A
1 TATCTGAT-CTGGTGGCTCTGCCACATA
82547548 TTATCTGATCTGGTGGCTCTGCCACATA
1 -TATCTGATCTGGTGGCTCTGCCACATA
*
82547576 TATCTGTTCTGGTGGCTCTGCCACAATA
1 TATCTGATCTGGTGGCTCTGCCAC-ATA
*
82547604 TTTCT-ATCTGGTG
1 TATCTGATCTGGTG
82547617 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
26 2 0.02
27 72 0.87
28 9 0.11
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TATCTGATCTGGTGGCTCTGCCACATA
Found at i:82549437 original size:21 final size:20
Alignment explanation
Indices: 82549387--82549437 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
82549377 TTTTTTTTAG
*
82549387 GATTTCTTTTATCGTGTTTT
1 GATTTCTTTTATCGTGTTGT
*
82549407 GATTTTTTTTATTC-TGTTGT
1 GATTTCTTTTA-TCGTGTTGT
82549427 GAATTTCTTTT
1 G-ATTTCTTTT
82549438 GGGAGGGGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.12, C:0.08, G:0.14, T:0.67
Consensus pattern (20 bp):
GATTTCTTTTATCGTGTTGT
Found at i:82562030 original size:21 final size:20
Alignment explanation
Indices: 82561971--82562030 Score: 54
Period size: 19 Copynumber: 3.0 Consensus size: 20
82561961 ACAAATAGTC
82561971 ATAAATGCAATTACTTAAT-
1 ATAAATGCAATTACTTAATA
* *
82561990 AT-GATGTCAATT-CATGAATA
1 ATAAATG-CAATTAC-TTAATA
82562010 AGTAAATGCAATTACTTAATA
1 A-TAAATGCAATTACTTAATA
82562031 TGGTATGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
18 4 0.13
19 11 0.35
20 1 0.03
21 11 0.35
22 4 0.13
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (20 bp):
ATAAATGCAATTACTTAATA
Found at i:82564819 original size:12 final size:12
Alignment explanation
Indices: 82564804--82564835 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
82564794 CACTGTAAGG
82564804 GTAACAGTAATA
1 GTAACAGTAATA
*
82564816 GTAATAGTAATA
1 GTAACAGTAATA
82564828 GTAACAGT
1 GTAACAGT
82564836 CAGGTACGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (12 bp):
GTAACAGTAATA
Found at i:82567977 original size:14 final size:14
Alignment explanation
Indices: 82567958--82567985 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
82567948 AAAAACAGGC
82567958 GACGTTAAATGGAA
1 GACGTTAAATGGAA
82567972 GACGTTAAATGGAA
1 GACGTTAAATGGAA
82567986 AACATCAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21
Consensus pattern (14 bp):
GACGTTAAATGGAA
Found at i:82568268 original size:16 final size:16
Alignment explanation
Indices: 82568243--82568273 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82568233 TATATAGATC
*
82568243 ATATATATTAAATTTG
1 ATATAAATTAAATTTG
82568259 ATATAAATTAAATTT
1 ATATAAATTAAATTT
82568274 TTTAATTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATATAAATTAAATTTG
Found at i:82568454 original size:11 final size:11
Alignment explanation
Indices: 82568438--82568469 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
82568428 TTAATATATT
82568438 AATTATAAAAA
1 AATTATAAAAA
82568449 AATTATAAAAA
1 AATTATAAAAA
*
82568460 AAATATAAAA
1 AATTATAAAA
82568470 TTACCCTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
AATTATAAAAA
Found at i:82575720 original size:9 final size:9
Alignment explanation
Indices: 82575698--82575734 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
82575688 ATTCGAAAAA
82575698 AATTCGAGTT
1 AATTCGA-TT
82575708 AATTCGATT
1 AATTCGATT
82575717 AATTCGATT
1 AATTCGATT
*
82575726 AACTCGATT
1 AATTCGATT
82575735 TGAATAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 19 0.73
10 7 0.27
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (9 bp):
AATTCGATT
Found at i:82583653 original size:21 final size:20
Alignment explanation
Indices: 82583615--82583654 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
82583605 TACATGTGTG
82583615 TTTTGATGATTTATGATAGA
1 TTTTGATGATTTATGATAGA
82583635 TTTTGAATG-TTTGATGATAG
1 TTTTG-ATGATTT-ATGATAG
82583655 TTATACAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (20 bp):
TTTTGATGATTTATGATAGA
Found at i:82594812 original size:3 final size:3
Alignment explanation
Indices: 82594806--82594873 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
82594796 ATGATTGTTT
*
82594806 ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
82594854 ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC AT
82594874 ATATTTCTGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:82599524 original size:21 final size:21
Alignment explanation
Indices: 82599495--82599550 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
82599485 ACGGGCTTCT
82599495 CACATGGGCATGTAT-CCGCTC
1 CACATGGGCATGTATGCC-CTC
* * * *
82599516 CACACGGGCGTGTGTGCCCTT
1 CACATGGGCATGTATGCCCTC
82599537 CACATGGGCATGTA
1 CACATGGGCATGTA
82599551 GACACCCACA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (21 bp):
CACATGGGCATGTATGCCCTC
Found at i:82602897 original size:34 final size:34
Alignment explanation
Indices: 82602854--82602965 Score: 188
Period size: 34 Copynumber: 3.3 Consensus size: 34
82602844 TGACTACTAC
82602854 TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
*
82602888 TGATACTGTGATGGGCTAAGGCCCTAATGCATAC
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
* *
82602922 TGATATTGTGATGGGCTAAGGCCCTACTGCATATT
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATA-T
82602957 TGATACTGT
1 TGATACTGT
82602966 ACTAAGATGG
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
34 64 0.89
35 8 0.11
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (34 bp):
TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
Found at i:82602928 original size:40 final size:39
Alignment explanation
Indices: 82602854--82602985 Score: 124
Period size: 34 Copynumber: 3.6 Consensus size: 39
82602844 TGACTACTAC
82602854 TGATACTGTGATGGGCTAAGGCCCTAATGC--A-T-AT-
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATACTGATA
82602888 TGATACTGTGATGGGCTAAGGCCCTAATGCATACTG--A
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATACTGATA
* *
82602925 T-AT--TGTGATGGGCTAAGGCCCTACTGCATATTTGATA
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATA-CTGATA
** *
82602962 CTG-TACTAAGATGGGCAAAGGCCC
1 -TGATACTGTGATGGGCTAAGGCCC
82602986 AAACCGTTAC
Statistics
Matches: 81, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
34 56 0.69
35 2 0.02
36 3 0.04
37 3 0.04
38 2 0.02
40 15 0.19
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (39 bp):
TGATACTGTGATGGGCTAAGGCCCTAATGCATACTGATA
Found at i:82614142 original size:46 final size:46
Alignment explanation
Indices: 82614086--82614258 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
82614076 TGGTTGAGCA
82614086 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
82614132 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82614177 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
82614225 CCCGAGCTCATTGATTTGAGTCCGAGTTAACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82614259 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82614244 original size:93 final size:93
Alignment explanation
Indices: 82614083--82614252 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
82614073 GGATGGTTGA
* * *
82614083 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
82614148 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
82614176 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
82614241 TGAGTCCGAGTT
66 TGAGTCCGAGTT
82614253 AACTTAGGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82617532 original size:52 final size:52
Alignment explanation
Indices: 82617470--82617611 Score: 156
Period size: 52 Copynumber: 2.9 Consensus size: 52
82617460 AAACCCAATT
* * *
82617470 ACATGTATCGCGTCCATAATGAACTTGGACCAACTCAATGAGCTCGGATGTC
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
* * *
82617522 ACATGTATCGCATCCATTATGAACTCGGATCAACTCAACGAGCTTGGATG--
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
* *
82617572 -C-TG----GCATCCATAATGAACTCAGACCAACTTAACGAGCTCG
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCG
82617612 AATGCCTCAT
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
44 32 0.41
48 2 0.03
49 1 0.01
52 44 0.56
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (52 bp):
ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
Found at i:82620420 original size:15 final size:15
Alignment explanation
Indices: 82620392--82620443 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
82620382 GATGACATGA
*
82620392 AAAT-CAAGATAAAG
1 AAATCCAAGAGAAAG
*
82620406 AAGTCCAAGAGAAAG
1 AAATCCAAGAGAAAG
* *
82620421 AAATCCAAGATACAG
1 AAATCCAAGAGAAAG
82620436 AAATCCAA
1 AAATCCAA
82620444 AATACAATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 3 0.09
15 29 0.91
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
AAATCCAAGAGAAAG
Found at i:82620448 original size:15 final size:15
Alignment explanation
Indices: 82620419--82620449 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82620409 TCCAAGAGAA
*
82620419 AGAAATCCAAGATAC
1 AGAAATCCAAAATAC
82620434 AGAAATCCAAAATAC
1 AGAAATCCAAAATAC
82620449 A
1 A
82620450 ATATCATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.19, G:0.10, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAAATAC
Found at i:82624355 original size:52 final size:52
Alignment explanation
Indices: 82624277--82624380 Score: 156
Period size: 52 Copynumber: 2.0 Consensus size: 52
82624267 CGAAACCCAA
* *
82624277 TTACATGTATCGCATCCATAATGAACTC-GAACCAACTTAATGAGCTCGGATG
1 TTACATGTATCGCATCCATAATGAACTCAG-ACCAACTCAACGAGCTCGGATG
* *
82624329 TTACATGTATCGCATCCATTATGAACTCAGATCAACTCAACGAGCTCGGATG
1 TTACATGTATCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATG
82624381 CTCGCATCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
52 46 0.98
53 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (52 bp):
TTACATGTATCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATG
Found at i:82630512 original size:34 final size:34
Alignment explanation
Indices: 82630469--82630549 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
82630459 GCATGACTGC
* *
82630469 TACTGATACTATGATGGGCTAAGGTCCTAATGCA
1 TACTGATACTATGATGGGCTAAGGCCCTAATACA
* *
82630503 TACTGATACTGTGATGGGCTAAGGCCCTACTACA
1 TACTGATACTATGATGGGCTAAGGCCCTAATACA
*
82630537 TATTTGATACTAT
1 TA-CTGATACTAT
82630550 ACTGAAATGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 32 0.80
35 8 0.20
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (34 bp):
TACTGATACTATGATGGGCTAAGGCCCTAATACA
Found at i:82634163 original size:48 final size:48
Alignment explanation
Indices: 82634086--82634186 Score: 175
Period size: 48 Copynumber: 2.1 Consensus size: 48
82634076 TATATATTGT
* *
82634086 CACCCTGATTGCCCGACAACGATGGTTTTCTCAATTGGATTAATCTGC
1 CACCCTGATTGCCCAACAACGATGATTTTCTCAATTGGATTAATCTGC
*
82634134 CACCCTGATTGCCCAACAATGATGATTTTCTCAATTGGATTAATCTGC
1 CACCCTGATTGCCCAACAACGATGATTTTCTCAATTGGATTAATCTGC
82634182 CACCC
1 CACCC
82634187 AAGGTTTCCC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.31
Consensus pattern (48 bp):
CACCCTGATTGCCCAACAACGATGATTTTCTCAATTGGATTAATCTGC
Found at i:82635816 original size:40 final size:40
Alignment explanation
Indices: 82635757--82635852 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
82635747 TTTTTGAATC
* *
82635757 AATG-AAAGGTTGAAAAGGATGTTATCCAAAAGGATAACA
1 AATGAAAAGGTTGAAAAGGATGTCATACAAAAGGATAACA
* * *
82635796 AATGAAAAGGTTGAACAGGATGTCATATAAAAGGATAATA
1 AATGAAAAGGTTGAAAAGGATGTCATACAAAAGGATAACA
* *
82635836 GATGAAAAGGTCGAAAA
1 AATGAAAAGGTTGAAAA
82635853 TGATATCAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 4 0.08
40 44 0.92
ACGTcount: A:0.50, C:0.06, G:0.24, T:0.20
Consensus pattern (40 bp):
AATGAAAAGGTTGAAAAGGATGTCATACAAAAGGATAACA
Found at i:82637259 original size:42 final size:42
Alignment explanation
Indices: 82637196--82637282 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
82637186 CTTACCTCGC
* *
82637196 GAAAGTGCTAGGGGTTTCATCGACTTCGTTGAAATCGGGGTA
1 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
82637238 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
1 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
82637280 GAA
1 GAA
82637283 GGGATCCTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (42 bp):
GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
Found at i:82638745 original size:16 final size:17
Alignment explanation
Indices: 82638721--82638766 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
82638711 CATGTTTTTG
*
82638721 TCATGTATTTTTTG-TA
1 TCATATATTTTTTGATA
82638737 TCATATATTTTTTGTACTA
1 TCATATATTTTTTG-A-TA
82638756 TCATATATTTT
1 TCATATATTTT
82638767 GTTAACTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 13 0.50
19 13 0.50
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.61
Consensus pattern (17 bp):
TCATATATTTTTTGATA
Found at i:82639650 original size:131 final size:129
Alignment explanation
Indices: 82639468--82639767 Score: 311
Period size: 129 Copynumber: 2.3 Consensus size: 129
82639458 GCGTTTGACA
* * * * * * * *
82639468 ATTTGAGAATCATGCCCTATCCTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACGATCGAACATT
1 ATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGCTC-AAACAATCGAACATC
* * ** *
82639533 CCTTTA-TATTCTCACTCA-TGTTTATAAAAAATAC-TTAAAAATGAAGACGATGTTCAATATTT
65 CCTTCAGAATT-TCACTCACAATTCAT--AAAAT-CTTTAAAAATGAAGACGATGTTCAATATTT
82639595 GGCG
126 GGCG
* *
82639599 ATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGTTCAAACAATTGAACATCC
1 ATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGCTCAAACAATCGAACATCC
* * * * * *
82639664 CTTCAGAATTTCACTCACAATTCCTAAAATCTTTCAAAATGAAGGCGATGTTCGATGTTTGGTG
66 CTTCAGAATTTCACTCACAATTCATAAAATCTTTAAAAATGAAGACGATGTTCAATATTTGGCG
* *
82639728 ATTTGAGAATCGA-GCCCTATCGTGTTGGGTTGCGCTTTTT
1 ATTTGAGAATC-ATGCCCTATCATGCTGGGTTGCGCTTTTT
82639768 TATTTGTCCA
Statistics
Matches: 142, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
128 1 0.01
129 68 0.48
130 25 0.18
131 48 0.34
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (129 bp):
ATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGCTCAAACAATCGAACATCC
CTTCAGAATTTCACTCACAATTCATAAAATCTTTAAAAATGAAGACGATGTTCAATATTTGGCG
Found at i:82645672 original size:40 final size:40
Alignment explanation
Indices: 82645588--82645812 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
82645578 AAACCAAGTA
* * * * *
82645588 CCTTCGGGATTTAG-CCGGATATCGCAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
* * *
82645627 GCTTCGGGACTTAACCCGAATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
* * *
82645667 CCTTCGGGTCTTAGCCCAGAA-ATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATG
** *
82645707 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAATATAG-TA--ACTCGCACAAATG
* **
82645750 CCTTCGGGACTTAGCCTGAATATAGTAACTTACACAAATG
1 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
* *
82645790 CCTCCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGAATAT
82645813 CATCCGAATA
Statistics
Matches: 151, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
39 12 0.08
40 101 0.67
41 3 0.02
42 1 0.01
43 34 0.23
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
Found at i:82645764 original size:83 final size:81
Alignment explanation
Indices: 82645588--82645812 Score: 253
Period size: 83 Copynumber: 2.8 Consensus size: 81
82645578 AAACCAAGTA
* * * * * * *
82645588 CCTTCGGGATTTAGCC-GGATATCGCAACTT-GCACAAATGGCTTCGGGACTTAACCCGAATATA
1 CCTTCGGGACTTAGCCAGAATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
82645651 GTAACTCGCACACATG
66 GAAACTCGCACAAATG
* * *
82645667 CCTTCGGGTCTTAGCCCAGAA-ATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGGTAT
1 CCTTCGGGACTTAG-CCAGAATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82645730 AGCAACTACTCGCACAAATG
65 AG-AA--ACTCGCACAAATG
* *
82645750 CCTTCGGGACTTAGCCTGAATATAGTAACTTA-CACAAATGCCTCCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCAGAATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82645813 CATCCGAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
79 13 0.11
80 37 0.31
81 3 0.02
82 5 0.04
83 61 0.50
84 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCAGAATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GAAACTCGCACAAATG
Found at i:82645803 original size:123 final size:119
Alignment explanation
Indices: 82645588--82645806 Score: 303
Period size: 123 Copynumber: 1.8 Consensus size: 119
82645578 AAACCAAGTA
* * *
82645588 CCTTCGGGATTTAGCCGGATATCGCAACTTGCACAAATGGCTTCGGGACTTAACCCGAATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTTGCACAAATGCCTTCGGGACTTAACCCGAATATAGT
* * * *
82645653 AACTCGCACACATGCCTTCGGGTCTTAGCCCAGAAATAGTCACTAGCACAAATG
66 AACTCACACAAATGCCTCCGGGACTTAGCCCAGAAATAGTCACTAGCACAAATG
* * *
82645707 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCTGAATA
1 CCTTCGGGACTTAG-CCGGATATAGCAACT--T-GCACAAATGCCTTCGGGACTTAACCCGAATA
*
82645772 TAGTAACTTACACAAATGCCTCCGGGACTTAGCCC
62 TAGTAACTCACACAAATGCCTCCGGGACTTAGCCC
82645807 GGATATCATC
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
119 13 0.15
120 13 0.15
122 1 0.01
123 58 0.68
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTTGCACAAATGCCTTCGGGACTTAACCCGAATATAGT
AACTCACACAAATGCCTCCGGGACTTAGCCCAGAAATAGTCACTAGCACAAATG
Found at i:82654017 original size:40 final size:40
Alignment explanation
Indices: 82653948--82654171 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
82653938 AAACCAAGTA
* * *
82653948 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82653987 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
82654027 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82654067 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
82654110 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82654150 CC-TCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82654172 CATCCGAATA
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 32 0.20
40 92 0.57
42 1 0.01
43 36 0.22
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82654135 original size:83 final size:80
Alignment explanation
Indices: 82653948--82654171 Score: 292
Period size: 83 Copynumber: 2.8 Consensus size: 80
82653938 AAACCAAGTA
* * * *
82653948 CCTTCGGGATTTAG-CCGGATATCG-CAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
82654011 GTAACTCGCACACATG
65 GAAACTCGCACAAATG
* * *
82654027 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
82654092 CAACTACTCGCACAAATG
66 -AA--ACTCGCACAAATG
* *
82654110 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCC-TCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82654172 CATCCGAATA
Statistics
Matches: 126, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
79 12 0.10
80 43 0.34
81 2 0.02
82 19 0.15
83 50 0.40
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
AAACTCGCACAAATG
Found at i:82661255 original size:24 final size:23
Alignment explanation
Indices: 82661211--82661267 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 23
82661201 TTTTACTTAT
* *
82661211 TTTCTTATTACTTAGTTATTTACG
1 TTTCTTATTACTCAGTAATTT-CG
82661235 TTTCTTATTCACTCA-TAATTTCG
1 TTTCTTATT-ACTCAGTAATTTCG
*
82661258 -TTATTATTAC
1 TTTCTTATTAC
82661268 GTATAAGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 7 0.24
23 2 0.07
24 14 0.48
25 4 0.14
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTCTTATTACTCAGTAATTTCG
Found at i:82662187 original size:27 final size:27
Alignment explanation
Indices: 82662113--82662188 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 27
82662103 GTTACGACAT
82662113 TAATAATATTATATAACATAAACTATTAC
1 TAATAATATTATAT-A-ATAAACTATTAC
* *
82662142 TAAAAATTTTA-ATATATAAACTATTA-
1 TAATAATATTATATA-ATAAACTATTAC
*
82662168 TAATAATATGATTATAATAAA
1 TAATAATATTA-TATAATAAA
82662189 AGATATAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 8 0.21
27 17 0.44
28 5 0.13
29 9 0.23
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.39
Consensus pattern (27 bp):
TAATAATATTATATAATAAACTATTAC
Found at i:82662366 original size:7 final size:7
Alignment explanation
Indices: 82662346--82662378 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
82662336 CAACTATTAG
82662346 TATAATA
1 TATAATA
82662353 -ATAATA
1 TATAATA
*
82662359 TTTAATA
1 TATAATA
82662366 TATAATA
1 TATAATA
82662373 TATAAT
1 TATAAT
82662379 GTACTACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
TATAATA
Found at i:82662670 original size:17 final size:18
Alignment explanation
Indices: 82662639--82662672 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82662629 AATTTAACTT
82662639 TAATTAAATTATTTAAAA
1 TAATTAAATTATTTAAAA
*
82662657 TAATT-AATTTTTTAAA
1 TAATTAAATTATTTAAA
82662673 TTATAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAAATTATTTAAAA
Found at i:82676581 original size:36 final size:35
Alignment explanation
Indices: 82676534--82676609 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 35
82676524 TTATTACGAA
* *
82676534 GTCTTACCCGGACATAATCTCCACACGAAGTTATC-G
1 GTCTTACCCGGACAAAATC-CC-CACGAAGTCATCGG
*
82676570 GTCTTACCCGGACAAAATCCCCACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACGAAGTCATCGG
82676605 GTCTT
1 GTCTT
82676610 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 10 0.28
35 8 0.22
36 18 0.50
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (35 bp):
GTCTTACCCGGACAAAATCCCCACGAAGTCATCGG
Found at i:82676802 original size:47 final size:47
Alignment explanation
Indices: 82676723--82677083 Score: 443
Period size: 47 Copynumber: 7.6 Consensus size: 47
82676713 GCCCTTCGGG
*
82676723 ACTTATCACATTTCATCACATTGGCCATTAGGCCCATCACATATATATAC
1 ACTT-TCACA-TTCATCACATCGGCCATTAGGCCCATCACA-ATATATAC
* *
82676773 ACTTTCACATTCATC-CATCGGCGATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-CATCACAATATATAC
*
82676819 ACTTTCACATT-ATCACACTCGGCCATTAGG-CC-TTATCAATATATAC
1 ACTTTCACATTCATCACA-TCGGCCATTAGGCCCATCA-CAATATATAC
**
82676865 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGC-CCATCACAATATATAC
*
82676912 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-CATCACAATATATA-C
*
82676960 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-CATCACAATATATAC
* **
82677007 ACTTTCACATTCATCACATCGGCCATTAGACATTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGC-CCATCACAATATATAC
*
82677054 ACTTTCACATTCATCACATTGGCCCATTAG
1 ACTTTCACATTCATCACATCGG-CCATTAG
82677084 CCATACTATC
Statistics
Matches: 285, Mismatches: 13, Indels: 28
0.87 0.04 0.09
Matches are distributed among these distances:
44 2 0.01
45 4 0.01
46 53 0.19
47 149 0.52
48 66 0.23
49 7 0.02
50 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCATCACAATATATAC
Found at i:82676989 original size:95 final size:94
Alignment explanation
Indices: 82676723--82677083 Score: 568
Period size: 95 Copynumber: 3.8 Consensus size: 94
82676713 GCCCTTCGGG
* *
82676723 ACTTATCACATTTCATCACATTGGCCATTAGGCC-CATCACATATATATACACTTTCACATTCAT
1 ACTT-TCACA-TTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
*
82676787 C-CATCGGCGATTAGGCCTTATCACATATATAC
62 CACATCGGCCATTAGGCCTTATCACATATATAC
82676819 ACTTTCACATT-ATCACACTCGGCCATTAGGCCTTATCA-ATATATACACTTTCACATTCATCAC
1 ACTTTCACATTCATCACA-TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
82676882 ATCGGCCATTAGGCATTATCACATATATAC
65 ATCGGCCATTAGGCCTTATCACATATATAC
82676912 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACCACTTTCACATTCATCAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-CACTTTCACATTCATCAC
82676977 ATCGGCCATTAGGCCTTATCACATATATAC
65 ATCGGCCATTAGGCCTTATCACATATATAC
* *
82677007 ACTTTCACATTCATCACATCGGCCATTAGACATTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
82677072 TTGGCCCATTAG
66 TCGG-CCATTAG
82677084 CCATACTATC
Statistics
Matches: 250, Mismatches: 8, Indels: 15
0.92 0.03 0.05
Matches are distributed among these distances:
92 23 0.09
93 66 0.26
94 50 0.20
95 107 0.43
96 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (94 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATAC
Found at i:82677033 original size:142 final size:140
Alignment explanation
Indices: 82676723--82677083 Score: 575
Period size: 142 Copynumber: 2.5 Consensus size: 140
82676713 GCCCTTCGGG
* * *
82676723 ACTTATCACATTTCATCACATTGGCCATTAGGCCCATCA-CATATATATACACTTTCACATTCAT
1 ACTT-TCACA-TTCATCACATCGGCCATTAGG--CATTATCACATATATACACTTTCACATTCAT
*
82676787 C-CATCGGCGATTAGGCCTTATCACATATATACACTTTCACATTATCACACTCGGCCATTAGGCC
62 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTATCACACTCGGCCATTAGGCC
82676851 TTATCAATATATAC
127 TTATCAATATATAC
82676865 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
82676930 TCGGCCATTAGGCCTTATCACATATATACCACTTTCACATTCATCACA-TCGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACATATATA-CACTTTCACATT-ATCACACTCGGCCATTAGGCCTT
82676994 ATCACATATATAC
129 ATCA-ATATATAC
*
82677007 ACTTTCACATTCATCACATCGGCCATTAGACATTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
*
82677072 TTGGCCCATTAG
66 TCGG-CCATTAG
82677084 CCATACTATC
Statistics
Matches: 207, Mismatches: 6, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
138 4 0.02
139 25 0.12
140 49 0.24
141 37 0.18
142 85 0.41
143 7 0.03
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (140 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTATCACACTCGGCCATTAGGCCTTAT
CAATATATAC
Found at i:82677070 original size:25 final size:25
Alignment explanation
Indices: 82676994--82677072 Score: 83
Period size: 25 Copynumber: 3.3 Consensus size: 25
82676984 ATTAGGCCTT
82676994 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** **
82677019 ATCACAT-CGGCCA-TTAGACATT-
1 ATCACATATATACACTTTCACATTC
82677041 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
82677066 ATCACAT
1 ATCACAT
82677073 TGGCCCATTA
Statistics
Matches: 39, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
22 7 0.18
23 9 0.23
24 9 0.23
25 14 0.36
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:82688760 original size:40 final size:40
Alignment explanation
Indices: 82688690--82688945 Score: 369
Period size: 40 Copynumber: 6.4 Consensus size: 40
82688680 CAACCAAGTA
* * *
82688690 CCTTCGGGATTTAG-CCGGACA-TAG-CTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGA-ATTAGTC-ACTAGCACAAATG
* *
82688729 CCTTCGGGACTTAGCCCGGACA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
* *
82688769 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATG
82688809 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
82688849 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
82688889 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
*
82688929 CCTTCAGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
82688946 CGTTATCATC
Statistics
Matches: 206, Mismatches: 6, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.00
39 13 0.06
40 190 0.92
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
Found at i:82696825 original size:40 final size:40
Alignment explanation
Indices: 82696745--82696969 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
82696735 AAACCAAGTA
* * *
82696745 CCTTCGGGATTTAG-CCGGATATCGCAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCACAAATG
* *
82696784 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
82696824 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
82696864 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTA---GCACAAATG
* *
82696907 CCTTCGGGACTTAGCCCGGATATTGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
82696947 CCTCCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82696970 CATCCGAATA
Statistics
Matches: 161, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
39 13 0.08
40 112 0.70
43 36 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:82696946 original size:83 final size:80
Alignment explanation
Indices: 82696745--82696969 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 80
82696735 AAACCAAGTA
* * * *
82696745 CCTTCGGGATTTAG-CCGGATATCGCAACTCA-CACAAATGCCTTCGGGACTTAACCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
82696808 GTAACTAGCACACATG
65 GCAACTAGCACAAATG
* * * *
82696824 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
82696889 CAACTACTCGCACAAATG
66 CAACTA---GCACAAATG
* * *
82696907 CCTTCGGGACTTAGCCCGGATATTGTAACTTGCACAAATGCCTCCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82696970 CATCCGAATA
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 13 0.10
80 47 0.38
83 64 0.52
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
CAACTAGCACAAATG
Found at i:82723149 original size:48 final size:48
Alignment explanation
Indices: 82723093--82723184 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
82723083 GAAGGGATGG
* * *
82723093 ATAGTGATAGGCA-TGTAGACAGTGGAAGATCAAGTTTAGCAATGATAA
1 ATAGTGATAAG-AGTGTAGACAGTGGAAGACCAAGTTTAGAAATGATAA
82723141 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
1 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
82723185 CATAGCATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
47 1 0.03
48 39 0.98
ACGTcount: A:0.40, C:0.08, G:0.28, T:0.24
Consensus pattern (48 bp):
ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGATAA
Found at i:82727851 original size:3 final size:3
Alignment explanation
Indices: 82727845--82727870 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
82727835 TCTTAAATAT
82727845 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
82727871 CCTCTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:82728028 original size:15 final size:15
Alignment explanation
Indices: 82728008--82728053 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
82727998 ACTACCACAT
* *
82728008 TTATTATTCTCGTTA
1 TTATTATTATCATTA
82728023 TTATTATTATCATTA
1 TTATTATTATCATTA
*
82728038 TTATTACTATCATTA
1 TTATTATTATCATTA
82728053 T
1 T
82728054 AATTTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (15 bp):
TTATTATTATCATTA
Found at i:82730781 original size:27 final size:27
Alignment explanation
Indices: 82730741--82730833 Score: 73
Period size: 27 Copynumber: 3.4 Consensus size: 27
82730731 TTTATTAAAC
* *
82730741 TTTTTGAAACATTTTATATTTTTGAAT
1 TTTTTAAAATATTTTATATTTTTGAAT
82730768 TTTTTAAAATATTTTATAATTATTATGAAT
1 TTTTTAAAATATTTTAT-ATT-TT-TGAAT
* * * * *
82730798 ATTAT-ATATATTTCA-ATTTTTGTTAT
1 TTTTTAAAATATTTTATATTTTTG-AAT
82730824 TTTTTAAAAT
1 TTTTTAAAAT
82730834 TCAACCAATT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
25 2 0.04
26 7 0.14
27 21 0.41
28 3 0.06
29 10 0.20
30 8 0.16
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.59
Consensus pattern (27 bp):
TTTTTAAAATATTTTATATTTTTGAAT
Found at i:82743437 original size:19 final size:19
Alignment explanation
Indices: 82743409--82743506 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
82743399 AATCCTTAAG
*
82743409 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82743428 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82743447 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
82743464 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
82743483 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
82743504 GAT
1 GAT
82743507 CTTGTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 17 0.24
19 47 0.65
21 8 0.11
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82743452 original size:36 final size:36
Alignment explanation
Indices: 82743412--82743506 Score: 145
Period size: 36 Copynumber: 2.5 Consensus size: 36
82743402 CCTTAAGGAT
82743412 ATACAATCTTAGATATGATATGCAATCTTAGATATG
1 ATACAATCTTAGATATGATATGCAATCTTAGATATG
*
82743448 ATACAATCTTAGATATGATATGCAATCTTATATATG
1 ATACAATCTTAGATATGATATGCAATCTTAGATATG
82743484 ATATGCAATCTTGAAGATATGAT
1 ATA--CAATCTT--AGATATGAT
82743507 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
36 38 0.70
38 7 0.13
40 9 0.17
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
ATACAATCTTAGATATGATATGCAATCTTAGATATG
Found at i:82748921 original size:12 final size:10
Alignment explanation
Indices: 82748904--82748950 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
82748894 CTTCTATTTC
82748904 AAAAAAAAAGG
1 AAAAAAAAA-G
82748915 AAAAAAAAAG
1 AAAAAAAAAG
*
82748925 AAAAAATAA-
1 AAAAAAAAAG
* *
82748934 AAAATAAAAT
1 AAAAAAAAAG
82748944 AAAAAAA
1 AAAAAAA
82748951 TGGAGAGGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
9 7 0.23
10 15 0.48
11 9 0.29
ACGTcount: A:0.87, C:0.00, G:0.06, T:0.06
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:82750050 original size:132 final size:132
Alignment explanation
Indices: 82749813--82750902 Score: 1881
Period size: 132 Copynumber: 8.4 Consensus size: 132
82749803 CAGAGAAACA
* * *
82749813 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGACACTCCTATACTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
82749878 ACAGTGAAACAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
82749943 GC
131 GC
* * *
82749945 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTAACACTGCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
82750010 ACAGCGAAGCAGATCGAAGATTTCAGGATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
82750075 GC
131 GC
* *
82750077 AGAATTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
82750142 ACAACGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
82750207 GC
131 GC
*
82750209 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
82750274 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
82750339 GC
131 GC
82750341 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
82750406 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
82750471 GC
131 GC
*
82750473 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
82750538 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
82750603 -A
131 GC
*
82750604 AGATTTGGCAT-CCTGTGTTTATAGGGAACAGATCGAAGATAGCAAATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
82750668 ACAGCGAAGCAGATC-AAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
82750732 GC
131 GC
82750734 AGATTTGGCAT-CCTGTGTTTATAGGGAACA-ATCGAAGATAGCAGATCT--CA-TCCT-TGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
82750793 A-A--GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAG-TGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
82750854 GC
131 GC
*
82750856 A-A-TTGGCAT-CCTGTGTTTATAGGGAACA-ATCGAAGATAACAGATCTG
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTG
82750903 GCATCTCCAT
Statistics
Matches: 921, Mismatches: 34, Indels: 17
0.95 0.03 0.02
Matches are distributed among these distances:
120 43 0.05
121 1 0.00
122 21 0.02
123 40 0.04
124 1 0.00
125 6 0.01
126 4 0.00
127 2 0.00
129 66 0.07
130 96 0.10
131 11 0.01
132 630 0.68
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:82751503 original size:19 final size:19
Alignment explanation
Indices: 82751479--82751540 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
82751469 AATCTTTAAG
82751479 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82751498 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82751517 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
82751538 GAT
1 GAT
82751541 TTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82754045 original size:19 final size:19
Alignment explanation
Indices: 82754001--82754041 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
82753991 AACAATTTAT
82754001 AAATAGATAAATAATAAGTA
1 AAATA-ATAAATAATAAGTA
*
82754021 AAATAATAAATGATAA-TA
1 AAATAATAAATAATAAGTA
82754039 AAA
1 AAA
82754042 ATAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (19 bp):
AAATAATAAATAATAAGTA
Found at i:82754328 original size:5 final size:5
Alignment explanation
Indices: 82754318--82754347 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
82754308 GAGTAATGAT
*
82754318 ATAAA ATAAA ATATA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
82754348 TGTGCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:82754421 original size:3 final size:3
Alignment explanation
Indices: 82754415--82754540 Score: 101
Period size: 3 Copynumber: 42.3 Consensus size: 3
82754405 ACAAAAAAAT
* * * * * * *
82754415 ATA ATA ATG ATA ATA ATA ATA GTA ATA ACA AAA ACA GTA ATA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
82754463 GTA ATA AAA ATA ATA GTA ATA GTA ATA ATA AAA ATA AAA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
82754510 ATA GTA ATA ATA ATA TTA ATA ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
82754541 AATTAATTAA
Statistics
Matches: 92, Mismatches: 30, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
2 2 0.02
3 90 0.98
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:82758310 original size:18 final size:21
Alignment explanation
Indices: 82758287--82758337 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 21
82758277 AAGCAGCTGA
82758287 AAAAGAAAG-GAA-AG-AAAG
1 AAAAGAAAGAGAAGAGAAAAG
82758305 AAAAGAAAGAGAAGAGAAAAG
1 AAAAGAAAGAGAAGAGAAAAG
*
82758326 AAAA-AGAGAGAA
1 AAAAGAAAGAGAA
82758338 AATTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 9 0.31
19 3 0.10
20 9 0.31
21 8 0.28
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (21 bp):
AAAAGAAAGAGAAGAGAAAAG
Found at i:82758317 original size:15 final size:15
Alignment explanation
Indices: 82758297--82758339 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
82758287 AAAAGAAAGG
82758297 AAAGAAAGAAAAGAA
1 AAAGAAAGAAAAGAA
*
82758312 AGAGAAGAGAAAAGAA
1 AAAGAA-AGAAAAGAA
*
82758328 AAAGAGAGAAAA
1 AAAGAAAGAAAA
82758340 TTTTGCATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAAGAA
Found at i:82758324 original size:16 final size:16
Alignment explanation
Indices: 82758297--82758339 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
82758287 AAAAGAAAGG
82758297 AAAGAA-AGAAAAGAA
1 AAAGAAGAGAAAAGAA
*
82758312 AGAGAAGAGAAAAGAA
1 AAAGAAGAGAAAAGAA
82758328 AAAG-AGAGAAAA
1 AAAGAAGAGAAAA
82758340 TTTTGCATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAAGAAGAGAAAAGAA
Found at i:82760766 original size:34 final size:34
Alignment explanation
Indices: 82760715--82760782 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
82760705 AAAATGAGAG
* * **
82760715 ATTATCTCTTAAGACTTCTTTGAAACATCCCACT
1 ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
*
82760749 ATTATCTCCTAAAACTTCTTAAAAACGTCCCACT
1 ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
82760783 CACTTCCCTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.35
Consensus pattern (34 bp):
ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
Found at i:82762211 original size:24 final size:24
Alignment explanation
Indices: 82762184--82762240 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
82762174 TGTATCTGGT
*
82762184 TATGAAAATACATCTGAATTTGTA
1 TATGAAAATACATCTGAATCTGTA
* ** *
82762208 TATGATAATATGTTTGAATCTGTA
1 TATGAAAATACATCTGAATCTGTA
*
82762232 TCTGAAAAT
1 TATGAAAAT
82762241 GTATCTGTTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (24 bp):
TATGAAAATACATCTGAATCTGTA
Found at i:82764256 original size:20 final size:19
Alignment explanation
Indices: 82764205--82764257 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
82764195 ACTTGCTTAA
* *
82764205 AAACAATTTTAACATGATTG
1 AAAC-ATTTTAACTTAATTG
82764225 AAA-ATGTTTAACTTAATTG
1 AAACAT-TTTAACTTAATTG
82764244 AAACCATTTTAACT
1 AAA-CATTTTAACT
82764258 AGATTTTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 2 0.07
19 14 0.50
20 10 0.36
21 2 0.07
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (19 bp):
AAACATTTTAACTTAATTG
Found at i:82764572 original size:24 final size:24
Alignment explanation
Indices: 82764540--82764587 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
82764530 AGAAAAATGG
*
82764540 GTCGTAGTCACAAATGCATGCGTT
1 GTCGCAGTCACAAATGCATGCGTT
82764564 GTCGCAGTCACAAATGCATGCGTT
1 GTCGCAGTCACAAATGCATGCGTT
82764588 TTCTCACTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (24 bp):
GTCGCAGTCACAAATGCATGCGTT
Found at i:82765798 original size:34 final size:34
Alignment explanation
Indices: 82765760--82765828 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
82765750 TAACATTCTT
82765760 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
1 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
*
82765794 TTATTTTATTTTAAGTAATTTAATTATGTTTAAA
1 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
82765828 T
1 T
82765829 GAAGAAATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (34 bp):
TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
Found at i:82771078 original size:97 final size:96
Alignment explanation
Indices: 82770908--82771100 Score: 271
Period size: 97 Copynumber: 2.0 Consensus size: 96
82770898 TGGTGGCTTA
* * **
82770908 AATTTGCTTCACTGCAACTTCAGGAAGACATGATTCGCTGTTTTTTATCTGCTCCACTGCAACTT
1 AATTTGCTTCACTGCAACTTCAGGAAGACATGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
*
82770973 CAAGGAAACGAGATCTACAATTTCAGCCTAC
66 CAAGGAAACAAGATCTACAATTTCAGCCTAC
* * *
82771004 AATTCTGCTTCACTGCAATTTCAGGAAGAC-TAGATTCTCCGTCTTCGATCTGTTCCACTGCAAC
1 AATT-TGCTTCACTGCAACTTCAGGAAGACAT-GATTCGCCGTCTTCGATCTGCTCCACTGCAAC
* *
82771068 TTCAGGGAAACAAGATCTACAATTTTAGCCTAC
64 TTCAAGGAAACAAGATCTACAATTTCAGCCTAC
82771101 TCCACTACAA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
96 5 0.06
97 80 0.94
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (96 bp):
AATTTGCTTCACTGCAACTTCAGGAAGACATGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
CAAGGAAACAAGATCTACAATTTCAGCCTAC
Done.