Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 249 of 344
Found at i:82771313 original size:134 final size:131
Alignment explanation
Indices: 82771007--82771340 Score: 488
Period size: 134 Copynumber: 2.5 Consensus size: 131
82770997 AGCCTACAAT
* * *
82771007 TCTGCTTCACTGCAATTTCAGGAAGACTAGATTCTCCGTCTTCGATCTGTTCCACTGCAACTTCA
1 TCTGCTTCACTGCAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
* * *
82771072 GGGAAACAAGATCTACAATTTTAGCCTACTCCACTACAACTTTAGGGGCTAGGTTGGTGGCTTAA
66 GGGAAACAAGATCTACAATTTCAGCCTACTCCACTACAACTTTAGGGGATAGGATGGTGGCTTAA
82771137 A
131 A
* * * * * * *
82771138 TCTGCTTCACTACAACTTCAAGAAGATTGGATTTGCTGTCTTTGATCTGCTCCACTGCAACTTCA
1 TCTGCTTCACTGCAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
* *
82771203 GGGAAACAAGATCTGTAGAATTTCAGCCTACTCCACTACAATTTTAGGGAGATAGGATGGTGGCT
66 GGGAAACAAGATC--TACAATTTCAGCCTACTCCACTACAACTTTAGGG-GATAGGATGGTGGCT
82771268 TAAA
128 TAAA
* *
82771272 TCTGCTTCACTGTAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
1 TCTGCTTCACTGCAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
82771337 GGGA
66 GGGA
82771341 GATAGGATGG
Statistics
Matches: 176, Mismatches: 24, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
131 68 0.39
133 31 0.18
134 77 0.44
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (131 bp):
TCTGCTTCACTGCAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
GGGAAACAAGATCTACAATTTCAGCCTACTCCACTACAACTTTAGGGGATAGGATGGTGGCTTAA
A
Found at i:82784294 original size:21 final size:21
Alignment explanation
Indices: 82784257--82784296 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82784247 ACTATCATAA
*
82784257 TAATAATTTTTATTTTTGTTG
1 TAATAATTTTTAGTTTTGTTG
*
82784278 TAATAATTTTTGGTTTTGT
1 TAATAATTTTTAGTTTTGT
82784297 ATTTGCACGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (21 bp):
TAATAATTTTTAGTTTTGTTG
Found at i:82784681 original size:27 final size:27
Alignment explanation
Indices: 82784627--82784681 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
82784617 ATTATACTAT
*
82784627 AATTATAAAATAATTAAATTGTACTTA
1 AATTATAAAATAATTAAATTGTAATTA
* *
82784654 AATTATTAAAAT-ATTGAATTTTAATTA
1 AATTA-TAAAATAATTAAATTGTAATTA
82784681 A
1 A
82784682 TTTTGATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (27 bp):
AATTATAAAATAATTAAATTGTAATTA
Found at i:82786099 original size:36 final size:36
Alignment explanation
Indices: 82786046--82786117 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
82786036 CACAGAGAAT
82786046 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
1 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
**
82786082 GGGTTTAATTGTGTAAAGTCATTTCAATTTCTTAAC
1 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
82786118 TCATATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (36 bp):
GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
Found at i:82786127 original size:36 final size:36
Alignment explanation
Indices: 82786059--82786127 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
82786049 TTTAATTGCA
** *
82786059 TAAAGTCATTTCAATTTCTTAACGGGTTTAATTGTG
1 TAAAGTCATTTCAATTTCTTAACGCATATAATTGTG
*
82786095 TAAAGTCATTTCAATTTCTTAACTCATATAATT
1 TAAAGTCATTTCAATTTCTTAACGCATATAATT
82786128 TATATTCATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (36 bp):
TAAAGTCATTTCAATTTCTTAACGCATATAATTGTG
Found at i:82786629 original size:6 final size:6
Alignment explanation
Indices: 82786571--82786637 Score: 80
Period size: 6 Copynumber: 11.0 Consensus size: 6
82786561 ATATACACTG
* * * *
82786571 TCAGAT ACAGAT ACAGAT ACAGAT TCAGTT TCAGAT TCAGAT TCAGAT
1 TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT
*
82786619 ATCAGAT TCAGTT TCAGAT
1 -TCAGAT TCAGAT TCAGAT
82786638 ATACAGAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
6 48 0.89
7 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (6 bp):
TCAGAT
Found at i:82789589 original size:39 final size:39
Alignment explanation
Indices: 82789546--82789655 Score: 157
Period size: 39 Copynumber: 2.8 Consensus size: 39
82789536 ACATATTTCT
* * * *
82789546 AGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCC
1 AGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCC
* *
82789585 AGCACATAGCCTGCAGACCTTAAGTCCTGATATAATTCC
1 AGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCC
*
82789624 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 AGCACATAGCCTGCGGACCTTAAGTCCGGATA
82789656 AACATCACTG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCC
Found at i:82789853 original size:39 final size:39
Alignment explanation
Indices: 82789799--82789912 Score: 156
Period size: 39 Copynumber: 2.9 Consensus size: 39
82789789 ACAGACATAT
* * * *
82789799 TTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
82789838 TTCCAGCACATAGCCTGCAGACCTTAAGTCCTGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
82789877 TTCCAGCATATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
82789913 AACATCACTG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:82789989 original size:257 final size:257
Alignment explanation
Indices: 82789533--82790054 Score: 1017
Period size: 257 Copynumber: 2.0 Consensus size: 257
82789523 GACTTTAGCC
*
82789533 CAGACATATTTCTAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
1 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
82789598 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
66 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
82789663 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
131 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
82789728 ATTTATTCCATTCGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
196 ATTTATTCCATTCGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
82789790 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
1 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
*
82789855 CAGACCTTAAGTCCTGATATAATTCCAGCATATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
66 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
82789920 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
131 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
82789985 ATTTATTCCATTCGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
196 ATTTATTCCATTCGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
*
82790047 CATACATA
1 CAGACATA
82790055 AGAATATATG
Statistics
Matches: 262, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
257 262 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (257 bp):
CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
ATTTATTCCATTCGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
Found at i:82796186 original size:46 final size:46
Alignment explanation
Indices: 82796119--82796348 Score: 325
Period size: 46 Copynumber: 5.0 Consensus size: 46
82796109 GTGTGCTCTC
* * *
82796119 TGATATGGAATGTGTAAGACCATGGTTGAATGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* *
82796165 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * *
82796211 TGATATGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* *
82796257 TGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*** *
82796303 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
82796349 AGAAAACGAG
Statistics
Matches: 168, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 131 0.78
47 37 0.22
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:82809920 original size:6 final size:6
Alignment explanation
Indices: 82809909--82809941 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
82809899 GTCAAGGATG
82809909 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GGG
1 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GGG
82809942 AGATTAGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (6 bp):
GGGGAA
Found at i:82811031 original size:30 final size:30
Alignment explanation
Indices: 82810982--82811046 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
82810972 TTTCGTTTTT
* *
82810982 GTCACCCAATTTTAGTAAATTTTTATTTCG
1 GTCACCCAACTTTAATAAATTTTTATTTCG
* *
82811012 GTCACCTAACTTTAATAAATTTTTATTTTG
1 GTCACCCAACTTTAATAAATTTTTATTTCG
82811042 GTCAC
1 GTCAC
82811047 TTATTTTATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (30 bp):
GTCACCCAACTTTAATAAATTTTTATTTCG
Found at i:82816145 original size:46 final size:46
Alignment explanation
Indices: 82815967--82816189 Score: 203
Period size: 46 Copynumber: 4.8 Consensus size: 46
82815957 TTGTGTGCTT
*
82815967 GTGTAAGACATGTCTGGGACATGCATCAG-TCACACT-ATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCT-ACA-TGATGAGAGCCA
** * *
82816013 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACGAGAGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACATGATGAGAGCCA
* * *
82816061 GTGTAAGACATGTCTGGGGCATGCATCAGCCT-CTTGATGTA-AGCCA
1 GTGTAAGACATGTCTGGGACATGCATC-GGCTACATGATG-AGAGCCA
* *
82816107 GTGTAAGACATGTCTGGGACATGCATCGGCTACATGAT--GTGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGAGAGCCA
*
82816151 GTATAAGACCATGTCTGGGACATGGCATCGGC-ACA-GATG
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACATGATG
82816190 CGTGGCGTCA
Statistics
Matches: 147, Mismatches: 17, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
44 13 0.09
45 20 0.14
46 60 0.41
47 30 0.20
48 22 0.15
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGAGAGCCA
Found at i:82822441 original size:11 final size:11
Alignment explanation
Indices: 82822425--82822449 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82822415 TTGTAGAAAG
82822425 TATTTTATTAT
1 TATTTTATTAT
82822436 TATTTTATTAT
1 TATTTTATTAT
82822447 TAT
1 TAT
82822450 AACATGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:82825401 original size:49 final size:49
Alignment explanation
Indices: 82825334--82825577 Score: 274
Period size: 49 Copynumber: 4.9 Consensus size: 49
82825324 AGCCAAAGCT
*
82825334 ATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * *
82825383 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACA
** *
82825433 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * * * * * **
82825481 GTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATT
1 ---ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * **
82825533 ATCTGGTACACATAGTAGCCTGCAGTTAGTACTACATGCGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
82825578 TCATAATAGC
Statistics
Matches: 164, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
48 2 0.01
49 80 0.49
50 45 0.27
51 36 0.22
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
Found at i:82825575 original size:100 final size:101
Alignment explanation
Indices: 82825346--82825568 Score: 274
Period size: 101 Copynumber: 2.2 Consensus size: 101
82825336 CTGGTACGCG
* * ** * *
82825346 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACA---ATCTAGTACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
* * *
82825408 TTAGTACTACACACGTGACCTCACCATCTAATACACG
65 TTAGTACTACACACGCGACCTAACCATCTAATACACA
82825445 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
* ** **
82825510 TAGTACTACACATGCGACC-AATTATCTGGTACACA
66 TAGTACTACACACGCGACCTAACCATCTAATACACA
*
82825545 TAGTAGCCTGCAGTTAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
82825569 TGCGTGACCT
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
98 3 0.03
99 32 0.30
100 33 0.31
101 38 0.36
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
TAGTACTACACACGCGACCTAACCATCTAATACACA
Found at i:82835021 original size:91 final size:91
Alignment explanation
Indices: 82834864--82835042 Score: 232
Period size: 91 Copynumber: 2.0 Consensus size: 91
82834854 GTTGTTGCAA
* * *** * * *
82834864 GTTAATACACTGTCAGTAGGTTGCGAATGCACAATGGGTTTGCAAATAAAAGTTGACATTAAATT
1 GTTAATACACTATCAGTAGGTTGCGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
*
82834929 TGTGGATAAACCACTTGTGTTTGTAG
66 TGTGGATAAACCACTAGTGTTTGTAG
* * * * *
82834955 GTTAATACGCTATCAGTAGGTTGTGAATATACAACAAGTTTACAGATAAAAGCTGACAGTAGATT
1 GTTAATACACTATCAGTAGGTTGCGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
82835020 TGTGGATAAACCACTAGTGTTTG
66 TGTGGATAAACCACTAGTGTTTG
82835043 CAGATAAACT
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
91 74 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (91 bp):
GTTAATACACTATCAGTAGGTTGCGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
TGTGGATAAACCACTAGTGTTTGTAG
Found at i:82835048 original size:46 final size:46
Alignment explanation
Indices: 82834901--82835050 Score: 119
Period size: 46 Copynumber: 3.3 Consensus size: 46
82834891 TGCACAATGG
* * * * *
82834901 GTTTGCAAATAAAAGTTGACATTAAATTTGTGGATAAACCACTTGT
1 GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACTAGT
* * * * * * * *
82834947 GTTTGTAGGTTAATACGCT-ATCAGTAG-GTTGTGAATATACAAC-A-A
1 GTTTGCA-GATAA-AAGCTGA-CAGTAGATTTGTGGATAAACCACTAGT
*
82834992 GTTTACAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACTAGT
1 GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACTAGT
82835038 GTTTGCAGATAAA
1 GTTTGCAGATAAA
82835051 CTACCAATAC
Statistics
Matches: 74, Mismatches: 23, Indels: 14
0.67 0.21 0.13
Matches are distributed among these distances:
43 10 0.14
44 17 0.23
45 6 0.08
46 18 0.24
47 16 0.22
48 7 0.09
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (46 bp):
GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACTAGT
Found at i:82835414 original size:20 final size:20
Alignment explanation
Indices: 82835389--82835434 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
82835379 TTAAGTGATA
*
82835389 TGGGTTTGTGTTTGAGGTCT
1 TGGGTTAGTGTTTGAGGTCT
82835409 TGGGTTAGTGTTTGAGGTCT
1 TGGGTTAGTGTTTGAGGTCT
82835429 TGGGTT
1 TGGGTT
82835435 CAACTCCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.07, C:0.04, G:0.41, T:0.48
Consensus pattern (20 bp):
TGGGTTAGTGTTTGAGGTCT
Found at i:82837181 original size:39 final size:39
Alignment explanation
Indices: 82837127--82837204 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
82837117 TGAGCTTACC
82837127 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
1 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
82837166 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
1 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
82837205 ATTGATTACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (39 bp):
CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
Found at i:82837416 original size:18 final size:18
Alignment explanation
Indices: 82837395--82837441 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 18
82837385 TTTTAAATAT
82837395 AATTACTTTTAACAAAAA
1 AATTACTTTTAACAAAAA
*
82837413 AATTTATATTTTAACAAAAA
1 AA-TTA-CTTTTAACAAAAA
82837433 AA-TACTTTT
1 AATTACTTTT
82837442 TTCACTTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 4 0.16
18 4 0.16
19 3 0.12
20 14 0.56
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
AATTACTTTTAACAAAAA
Found at i:82849452 original size:54 final size:53
Alignment explanation
Indices: 82849394--82849515 Score: 190
Period size: 54 Copynumber: 2.3 Consensus size: 53
82849384 ACTGGCTTAA
* * *
82849394 TTCACATGCCCGTGTGTCAACCCGTGTGCTAGCCCATGTGACTCACTGACTTGG
1 TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCC-TGTGACTCACTAACTTGG
**
82849448 TTCACACGCCTATGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
1 TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
82849501 TTCACACGCCCGTGT
1 TTCACACGCCCGTGT
82849516 CCCAGGCTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
53 30 0.49
54 31 0.51
ACGTcount: A:0.18, C:0.32, G:0.22, T:0.28
Consensus pattern (53 bp):
TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
Found at i:82849507 original size:53 final size:54
Alignment explanation
Indices: 82849406--82849510 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 54
82849396 CACATGCCCG
* *
82849406 TGTGTCAACCCGTGTGCTAGCCCATGTGACTCACTGACTTGGTTCACACGCCTA
1 TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCCTA
82849460 TGTGTCAACCAGTGTGCTAGCCC-TGTGACTCACTAACTTGGTTCACACGCC
1 TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCC
82849511 CGTGTCCCAG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 27 0.55
54 22 0.45
ACGTcount: A:0.19, C:0.31, G:0.22, T:0.28
Consensus pattern (54 bp):
TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCCTA
Found at i:82858310 original size:30 final size:30
Alignment explanation
Indices: 82858274--82858334 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
82858264 CAAATATTCC
82858274 TAGATAGTGTGATTTCTCGTGTCGATCCGA
1 TAGATAGTGTGATTTCTCGTGTCGATCCGA
82858304 TAGATAGTGTGATTTCTCGTGTCGATCCGA
1 TAGATAGTGTGATTTCTCGTGTCGATCCGA
82858334 T
1 T
82858335 CTTCCAAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38
Consensus pattern (30 bp):
TAGATAGTGTGATTTCTCGTGTCGATCCGA
Found at i:82858799 original size:109 final size:109
Alignment explanation
Indices: 82858572--82858990 Score: 446
Period size: 109 Copynumber: 3.8 Consensus size: 109
82858562 AATCTTATTT
* * * * * * *
82858572 AGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATTTAGTATAATCAGTCGATATTGCTCGTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGC-A-C-TTCAGTAGAATCAGTAGATATTACTCGTT
* * * * **
82858637 TGAGAAACTATGCAGTAGAATCAATAGATATCACTTGTTTGAGCACTTT-
63 TGAG-CACT-TTCAATAGAATCAGTAGATATTGCTTG-TTGAGCACTTTC
** * * * * * *
82858686 AGTAGAATCAGTTTACATTGTTCATTTGAGCACATTCAGTAGGATCAGTAGATATTGCTTG-TTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGATATTACTCGTTTG
* *
82858750 AGCACTTTCAGTAGGATCAGTAGATATTGCTTGTTGAGCACTTTC
65 AGCACTTTCAATAGAATCAGTAGATATTGCTTGTTGAGCACTTTC
* * * *
82858795 AGTAGAATCAATAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGAAATTACTCATTTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGATATTACTCGTTTGA
* * * *
82858860 GCACATTCAATAGGATTAGTAGATATTGCTCGTTGAGCACTTTC
66 GCACTTTCAATAGAATCAGTAGATATTGCTTGTTGAGCACTTTC
* * *
82858904 AGTAGAATTAGTAGATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGACATTACTCGTTTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGATATTACTCGTTTG
82858969 AGCACTTTCAATAGAATCAGTA
65 AGCACTTTCAATAGAATCAGTA
82858991 TTCTTTTCTT
Statistics
Matches: 259, Mismatches: 43, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
108 33 0.13
109 123 0.47
110 49 0.19
111 5 0.02
112 24 0.09
113 1 0.00
114 24 0.09
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (109 bp):
AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGATATTACTCGTTTGA
GCACTTTCAATAGAATCAGTAGATATTGCTTGTTGAGCACTTTC
Found at i:82858811 original size:145 final size:146
Alignment explanation
Indices: 82858578--82858990 Score: 515
Period size: 145 Copynumber: 2.8 Consensus size: 146
82858568 ATTTAGTATA
* * * *
82858578 ATCAGTGGATAATGCTCGTTTGAGCAAGCATTT-AGTATAATCAGTCGATATTGCTCGTTTGAGA
1 ATCAGTAGATATTGCTCG-TTGAGC-A-C-TTTCAGTAGAATCAGTAGATATTGCTCGTTTGAG-
* * * * ** * **
82858642 AACTATGCAGTAGAATCAATAGATATCACTTGTTTGAGCACTTTAGTAGAATCAGTTTACATTGT
61 CACT-TTCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAGTAGAAATTAC
* *
82858707 TCATTTGAGCACATTCAGTAGG
125 TCATTTCAGCACATTCAATAGG
* * *
82858729 ATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGGATCAGTAGATATTGCTTG-TTGAGCACTT
1 ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
* *
82858793 TCAGTAGAATCAATAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGAAATTACTCATTT
66 TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAGTAGAAATTACTCATTT
82858858 CAGCACATTCAATAGG
131 CAGCACATTCAATAGG
* *
82858874 ATTAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATTAGTAGATATTGCTCGTTTGAGCACTT
1 ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
* * * *
82858939 TTAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATAGAATCAGTA
66 TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTT-AGTAGAATCAGTA
82858991 TTCTTTTCTT
Statistics
Matches: 228, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
145 119 0.52
146 46 0.20
147 20 0.09
148 21 0.09
149 1 0.00
150 6 0.03
151 15 0.07
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (146 bp):
ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAGTAGAAATTACTCATTT
CAGCACATTCAATAGG
Found at i:82858881 original size:37 final size:37
Alignment explanation
Indices: 82858572--82858990 Score: 391
Period size: 36 Copynumber: 11.4 Consensus size: 37
82858562 AATCTTATTT
* * * *
82858572 AGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATTT-
1 AGTAGAATCAGTAGATATTACTCGTTTGAGC-A-C-TTTC
* * * * *
82858611 AGTATAATCAGTCGATATTGCTCGTTTGAGAAACTATGC
1 AGTAGAATCAGTAGATATTACTCGTTTGAG-CACT-TTC
* * *
82858650 AGTAGAATCAATAGATATCACTTGTTTGAGCACTTT-
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
** * ** * *
82858686 AGTAGAATCAGTTTACATTGTTCATTTGAGCACATTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * *
82858723 AGTAGGATCAGTAGATATTGCTTG-TTGAGCACTTTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * *
82858759 AGTAGGATCAGTAGATATTGCTTG-TTGAGCACTTTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* *
82858795 AGTAGAATCAATAGATATTGCTCGTTTGAGCAC-TTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * * *
82858831 AGTAGAATCAGTAGAAATTACTCATTTCAGCACATTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * * *
82858868 AATAGGATTAGTAGATATTGCTCG-TTGAGCACTTTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * *
82858904 AGTAGAATTAGTAGATATTGCTCGTTTGAGCACTTTT
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
*
82858941 AGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
*
82858978 AATAGAATCAGTA
1 AGTAGAATCAGTA
82858991 TTCTTTTCTT
Statistics
Matches: 319, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
36 157 0.49
37 104 0.33
38 5 0.02
39 53 0.17
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (37 bp):
AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
Found at i:82859994 original size:17 final size:17
Alignment explanation
Indices: 82859961--82859994 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
82859951 AACTTACTTT
*
82859961 TTAACTTTTTTACAAAA
1 TTAACTTTTTAACAAAA
*
82859978 TTAACTTTTTAATAAAA
1 TTAACTTTTTAACAAAA
82859995 ATTATAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAACTTTTTAACAAAA
Found at i:82886693 original size:46 final size:46
Alignment explanation
Indices: 82886420--82886682 Score: 366
Period size: 46 Copynumber: 5.7 Consensus size: 46
82886410 TTCGACATGA
* * * * * * *
82886420 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
* ** * *** *
82886466 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTT-CATATCAGGT
82886513 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
82886559 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
82886605 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
82886651 TGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACAC
82886683 ATTTTCTATC
Statistics
Matches: 199, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 3 0.02
46 158 0.79
47 38 0.19
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
Found at i:82888789 original size:11 final size:11
Alignment explanation
Indices: 82888773--82888824 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
82888763 TATACTAAAT
82888773 AAATAATAATA
1 AAATAATAATA
*
82888784 AAATAAT-ATT
1 AAATAATAATA
* *
82888794 AAATATCTCATA
1 AAATA-ATAATA
*
82888806 AAATATTAATA
1 AAATAATAATA
82888817 AAATAATA
1 AAATAATA
82888825 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:82889348 original size:28 final size:28
Alignment explanation
Indices: 82889317--82889376 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
82889307 CGTGTCAATG
82889317 GCCCCTGTCCCTCACACGGCCACGACAC
1 GCCCCTGTCCCTCACACGGCCACGACAC
* *
82889345 GCCCGTTTCCCTCACACGGCCACGACAC
1 GCCCCTGTCCCTCACACGGCCACGACAC
82889373 GCCC
1 GCCC
82889377 GTTTCCTAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.17, C:0.53, G:0.18, T:0.12
Consensus pattern (28 bp):
GCCCCTGTCCCTCACACGGCCACGACAC
Found at i:82889377 original size:28 final size:28
Alignment explanation
Indices: 82889324--82889382 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
82889314 ATGGCCCCTG
82889324 TCCCTCACACGGCCACGACACGCCCGTT
1 TCCCTCACACGGCCACGACACGCCCGTT
82889352 TCCCTCACACGGCCACGACACGCCCGTT
1 TCCCTCACACGGCCACGACACGCCCGTT
82889380 TCC
1 TCC
82889383 TAGCCCGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.51, G:0.17, T:0.15
Consensus pattern (28 bp):
TCCCTCACACGGCCACGACACGCCCGTT
Found at i:82890440 original size:47 final size:46
Alignment explanation
Indices: 82890336--82890459 Score: 130
Period size: 47 Copynumber: 2.7 Consensus size: 46
82890326 GATAAGGTGC
** *
82890336 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATTTCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAACTCATATCTC-AGT
82890383 CGATGCCATGTCCCAAACATGGTCTTACACTAACT-ATCATCTC-GT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAACTCAT-ATCTCAGT
* *
82890428 CGCTGATG-CATGTCCTAGACAT-GTCTTACACT
1 --C-GATGCCATGTCCCAAACATGGTCTTACACT
82890460 GGCTTACGTC
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.03
46 12 0.18
47 50 0.74
48 4 0.06
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (46 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAACTCATATCTCAGT
Found at i:82897561 original size:13 final size:13
Alignment explanation
Indices: 82897543--82897570 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82897533 AGAAGGGTCT
82897543 TTTTCATTCATTA
1 TTTTCATTCATTA
82897556 TTTTCATTCATTA
1 TTTTCATTCATTA
82897569 TT
1 TT
82897571 GTAAATTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTCATTCATTA
Found at i:82902737 original size:14 final size:14
Alignment explanation
Indices: 82902718--82902752 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
82902708 GTGTATATGA
82902718 TGGTAATGTTCACT
1 TGGTAATGTTCACT
*
82902732 TGGTAATGTTGACT
1 TGGTAATGTTCACT
*
82902746 TTGTAAT
1 TGGTAAT
82902753 ATATATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.46
Consensus pattern (14 bp):
TGGTAATGTTCACT
Found at i:82918590 original size:13 final size:13
Alignment explanation
Indices: 82918572--82918598 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82918562 CGTGTCTGTA
82918572 CACACGGCCGTGT
1 CACACGGCCGTGT
82918585 CACACGGCCGTGT
1 CACACGGCCGTGT
82918598 C
1 C
82918599 CTACTGCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.41, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGCCGTGT
Found at i:82920417 original size:33 final size:33
Alignment explanation
Indices: 82920365--82920430 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
82920355 GGTTTCGAGC
82920365 CCCTAAATCGACGCCTGTTGATTCTTAAGTGCT
1 CCCTAAATCGACGCCTGTTGATTCTTAAGTGCT
* *
82920398 CCCTGAATCGACGCTTGTTGATTCTTAAGTGCT
1 CCCTAAATCGACGCCTGTTGATTCTTAAGTGCT
82920431 GTCTCGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (33 bp):
CCCTAAATCGACGCCTGTTGATTCTTAAGTGCT
Found at i:82924696 original size:44 final size:44
Alignment explanation
Indices: 82924633--82924721 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
82924623 TCATTCGAGA
* *
82924633 AAAAATTAAAAATATTTGTTTTACACATACTCTCTTTATTTTGT
1 AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
* * *
82924677 AAAAATTAAAAATTTTTGTTTCGCACATGCACTCTTTATTTTGT
1 AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
82924721 A
1 A
82924722 CCAAAGTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (44 bp):
AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
Found at i:82927479 original size:24 final size:24
Alignment explanation
Indices: 82927451--82927502 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
82927441 CTATTCCTCA
82927451 AGTTAGTACAAAAACTTAGAGTAG
1 AGTTAGTACAAAAACTTAGAGTAG
82927475 AGTTAGTACAAAAACTTAGAGTAG
1 AGTTAGTACAAAAACTTAGAGTAG
82927499 AGTT
1 AGTT
82927503 GTTTCCTCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.44, C:0.08, G:0.21, T:0.27
Consensus pattern (24 bp):
AGTTAGTACAAAAACTTAGAGTAG
Found at i:82928934 original size:20 final size:20
Alignment explanation
Indices: 82928909--82928949 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
82928899 GTTTTATAGT
82928909 ATTTTTATATGTTTTTATTTC
1 ATTTTTATA-GTTTTTATTTC
*
82928930 ATTTTTTTAGTTTTTATTTC
1 ATTTTTATAGTTTTTATTTC
82928950 TTTGTGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.73
Consensus pattern (20 bp):
ATTTTTATAGTTTTTATTTC
Found at i:82932542 original size:20 final size:20
Alignment explanation
Indices: 82932514--82932557 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
82932504 TATTTTATAG
82932514 TTTTTTAAT-TTTTTAATTT
1 TTTTTTAATATTTTTAATTT
*
82932533 TTTTTCTAATGATTTTTAGTTT
1 TTTTT-TAAT-ATTTTTAATTT
82932555 TTT
1 TTT
82932558 CGAATGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 4 0.19
22 12 0.57
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (20 bp):
TTTTTTAATATTTTTAATTT
Found at i:82935145 original size:6 final size:6
Alignment explanation
Indices: 82935129--82935157 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
82935119 ATTCCAAGGG
82935129 ATTAG- ATTAGA ATTAGA ATTAGA ATTAGA
1 ATTAGA ATTAGA ATTAGA ATTAGA ATTAGA
82935158 TTTTAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (6 bp):
ATTAGA
Found at i:82941118 original size:40 final size:40
Alignment explanation
Indices: 82940926--82941111 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
82940916 TTGAATGATG
* * *
82940926 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
82940966 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82941006 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82941046 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
82941087 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82941112 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82941118 original size:80 final size:79
Alignment explanation
Indices: 82940926--82941134 Score: 221
Period size: 80 Copynumber: 2.6 Consensus size: 79
82940916 TTGAATGATG
** * * * *
82940926 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTAG-CTAAATCCGG-TTAAG-TCCCAAAGGCA
82940988 TTTGTGCGAGTTACTAAA
62 TTTGTGCGAGTTACTAAA
* **
82941006 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAGTCCCAAAGGCATT
82941070 TGTGCGAGTTACTATAA
64 TGTGCGAGTTACTA-AA
* *
82941087 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAA
82941135 ATTCCGAAGG
Statistics
Matches: 112, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
79 9 0.08
80 91 0.81
81 12 0.11
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAGTCCCAAAGGCATTTG
TGCGAGTTACTAAA
Found at i:82943752 original size:48 final size:48
Alignment explanation
Indices: 82943681--82943817 Score: 172
Period size: 47 Copynumber: 2.9 Consensus size: 48
82943671 AAAGTGGAAG
* *
82943681 TTATTGGCAGTTTATCTACGATTTTGGTGACACTGTTCACAATATTGA
1 TTATTGGCAGTTTATTTGCGATTTTGGTGACACTGTTCACAATATTGA
* * * * * *
82943729 TTATTGGCAATTTATTTGCGATTTTGGTGGC-TTGTCCACTATATTTA
1 TTATTGGCAGTTTATTTGCGATTTTGGTGACACTGTTCACAATATTGA
82943776 TTATTGGCAGTTTATTTGC-ATTATT-GTGACACTGTTCACAAT
1 TTATTGGCAGTTTATTTGCGATT-TTGGTGACACTGTTCACAAT
82943818 TTGGTGTGTT
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
46 7 0.09
47 40 0.54
48 27 0.36
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45
Consensus pattern (48 bp):
TTATTGGCAGTTTATTTGCGATTTTGGTGACACTGTTCACAATATTGA
Found at i:82950910 original size:39 final size:40
Alignment explanation
Indices: 82950745--82950969 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
82950735 GCTACTTGTT
* * * *
82950745 CAAATGCCTTCCGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
82950785 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82950825 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * * *
82950865 CCAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
82950904 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
82950945 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82950970 CATCATTCGA
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 115 0.72
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82952172 original size:56 final size:56
Alignment explanation
Indices: 82952105--82952224 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
82952095 TATTAGTTTA
82952105 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
82952161 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
82952217 TTGCCCAT
1 TTGCCCAT
82952225 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:82952840 original size:26 final size:26
Alignment explanation
Indices: 82952811--82952864 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
82952801 CTACACTTAC
* *
82952811 TGTTATTGGTAGCTACGCTGCGTTAT
1 TGTTATTGGCAGCTACGCTGCGATAT
**
82952837 TGTTATTGGCAGCTTTGCTGCGATAT
1 TGTTATTGGCAGCTACGCTGCGATAT
82952863 TG
1 TG
82952865 ATGTGCTGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.15, G:0.28, T:0.43
Consensus pattern (26 bp):
TGTTATTGGCAGCTACGCTGCGATAT
Found at i:82957259 original size:29 final size:29
Alignment explanation
Indices: 82957215--82957331 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
82957205 TGGCCCATCT
82957215 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * *
82957244 CATTCATATGGGCCATCAGGCCTAATTTA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * * *
82957273 TATTCATATGGCCTATTAGGTCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * * *
82957302 CCTTTATATGGCCCGTTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
82957331 C
1 C
82957332 CTTATATTCA
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:82967002 original size:199 final size:199
Alignment explanation
Indices: 82966639--82967007 Score: 596
Period size: 199 Copynumber: 1.9 Consensus size: 199
82966629 TTTTTGACCC
* * * *
82966639 ACATGGCCTGGCCAAACGGGTGTGTGGAGCACACGACCTGGCCACACCGGTGTGTGGGATCTCAC
1 ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGACCTGGCCACACAGGCGTGTGGGATCTCAC
*
82966704 ATGGGCGTGGGAGAAGTGAAGGAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGG
66 ATGGGCGTGGGAGAAGCGAAGGAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGG
* * * * *
82966769 CCTGGACACATGGGCGTGTCCTAGGCCGTGTGAAACTTGGAGCTAATTTTTTTTCTCAGTCACAG
131 CCTAGACACACGGGCATGTCCTAGGCCATGTGAAAATTGGAGCTAATTTTTTTTCTCAGTCACAG
82966834 AGTT
196 AGTT
* *
82966838 ACATGGCCTGACCATACGGGTGTGTGAAGCACACGGCCTGGCCACACAGGCGTGTGGGATCTCAC
1 ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGACCTGGCCACACAGGCGTGTGGGATCTCAC
* *
82966903 ATGGGCGTGGGAGAAGCGAAGGAAAACACACACGGCTTGGCGACATGGCCATGTGACCCACACGG
66 ATGGGCGTGGGAGAAGCGAAGGAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGG
82966968 CCTAGACACACGGGCATGTCC-ATGGCCATGTGAAAATTGG
131 CCTAGACACACGGGCATGTCCTA-GGCCATGTGAAAATTGG
82967008 GTTAATCACC
Statistics
Matches: 155, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
198 1 0.01
199 154 0.99
ACGTcount: A:0.25, C:0.25, G:0.32, T:0.18
Consensus pattern (199 bp):
ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGACCTGGCCACACAGGCGTGTGGGATCTCAC
ATGGGCGTGGGAGAAGCGAAGGAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGG
CCTAGACACACGGGCATGTCCTAGGCCATGTGAAAATTGGAGCTAATTTTTTTTCTCAGTCACAG
AGTT
Found at i:82967059 original size:22 final size:21
Alignment explanation
Indices: 82967022--82967073 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
82967012 ATCACCCCAA
*
82967022 TTTT-ATTTTATTTTATTTAT
1 TTTTAATTTTATATTATTTAT
82967042 TTTTAATTGTTATATTATTTAT
1 TTTTAATT-TTATATTATTTAT
82967064 TTTT-ATTTTA
1 TTTTAATTTTA
82967074 CTAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 16 0.55
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (21 bp):
TTTTAATTTTATATTATTTAT
Found at i:82967080 original size:22 final size:20
Alignment explanation
Indices: 82967022--82967206 Score: 89
Period size: 19 Copynumber: 8.7 Consensus size: 20
82967012 ATCACCCCAA
*
82967022 TTTTATTTTATTTTATTTAT
1 TTTTATTTTATATTATTTAT
82967042 TTTTAATTGTTATATTATTTAT
1 TTTT-ATT-TTATATTATTTAT
82967064 TTTTATTTTACTAATTAATTAATAAAT
1 TTTTATTTTA-T-ATT-ATT--T--AT
82967091 TTATTATTCTTATACTTATATT-T
1 TT-TTATT-TTATA-TTAT-TTAT
* *
82967114 TTAATTTTTTTATATT-TTAAT
1 TT--TTATTTTATATTATTTAT
*
82967135 TTTT-TATATATATT-TATTAT
1 TTTTAT-TTTATATTAT-TTAT
82967155 TTATTATTTT-TATATATTT-T
1 TT-TTATTTTATAT-TATTTAT
* *
82967175 TATTATTTTTTATT-TTTAT
1 TTTTATTTTATATTATTTAT
82967194 TTTTATTTT-TATT
1 TTTTATTTTATATT
82967207 TTTTTCTATT
Statistics
Matches: 134, Mismatches: 8, Indels: 48
0.71 0.04 0.25
Matches are distributed among these distances:
18 8 0.06
19 27 0.20
20 21 0.16
21 18 0.13
22 23 0.17
23 11 0.08
24 5 0.04
25 1 0.01
26 1 0.01
27 7 0.05
28 9 0.07
29 3 0.02
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.71
Consensus pattern (20 bp):
TTTTATTTTATATTATTTAT
Found at i:82967133 original size:16 final size:16
Alignment explanation
Indices: 82967106--82967227 Score: 86
Period size: 17 Copynumber: 7.1 Consensus size: 16
82967096 ATTCTTATAC
82967106 TTATATTTTTAATTTTT
1 TTATA-TTTTAATTTTT
82967123 TTATATTTTAATTTTT
1 TTATATTTTAATTTTT
82967139 TATATATATTT-ATTATTT
1 T-TATAT-TTTAATT-TTT
*
82967157 ATTATTTTTATATATTTTT
1 -TTATATTT-TA-ATTTTT
* *
82967176 ATTATTTTTTATTTTTAT
1 -TTATATTTTAATTTT-T
* *
82967194 TTTTATTTTTATTTTT
1 TTATATTTTAATTTTT
*
82967210 TTCTATTTCT-ATTTTT
1 TTATATTT-TAATTTTT
82967226 TT
1 TT
82967228 TTCTTTTCTC
Statistics
Matches: 89, Mismatches: 7, Indels: 19
0.77 0.06 0.17
Matches are distributed among these distances:
16 28 0.31
17 31 0.35
18 14 0.16
19 13 0.15
20 3 0.03
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATATTTTAATTTTT
Found at i:82967164 original size:26 final size:26
Alignment explanation
Indices: 82967135--82967207 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
82967125 ATATTTTAAT
82967135 TTTTTATATATATTTATTATTTATTA
1 TTTTTATATATATTTATTATTTATTA
* *
82967161 TTTTTATATATTTTTATTATTTTTTA
1 TTTTTATATATATTTATTATTTATTA
* *
82967187 TTTTTATTTTTATTT-TTATTT
1 TTTTTATATATATTTATTATTT
82967208 TTTTCTATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 6 0.14
26 36 0.86
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTTTATATATATTTATTATTTATTA
Found at i:82967209 original size:6 final size:6
Alignment explanation
Indices: 82967109--82967229 Score: 81
Period size: 6 Copynumber: 20.0 Consensus size: 6
82967099 CTTATACTTA
* * * * *
82967109 TATTTT TAATTT T-TTTA TATTTT AATTTTT TATATA TATTTAT TATTTAT
1 TATTTT TATTTT TATTTT TATTTT TA-TTTT TATTTT TATTT-T TATTT-T
*
82967159 TATTTT TATATATT T-TTAT TATTTTT TATTTT TATTTT TATTTT TA-TTT
1 TATTTT TAT-T-TT TATTTT TA-TTTT TATTTT TATTTT TATTTT TATTTT
* *
82967208 T-TTTC TATTTC TATTTT T-TTTT
1 TATTTT TATTTT TATTTT TATTTT
82967230 CTTTTCTCTT
Statistics
Matches: 92, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
5 16 0.17
6 49 0.53
7 24 0.26
8 3 0.03
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:82967209 original size:26 final size:26
Alignment explanation
Indices: 82967169--82967234 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
82967159 TATTTTTATA
*
82967169 TATTTTTATTATTTTTTATTTTTATTTT
1 TATTTTTA-T-TTTTTTATATTTATTTT
* *
82967197 TATTTTTATTTTTTTCTATTTCTATTT
1 TATTTTTATTTTTTTATATTTAT-TTT
*
82967224 T-TTTTTCTTTT
1 TATTTTTATTTT
82967235 CTCTTTCGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 20 0.61
27 5 0.15
28 8 0.24
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.82
Consensus pattern (26 bp):
TATTTTTATTTTTTTATATTTATTTT
Found at i:82967251 original size:23 final size:21
Alignment explanation
Indices: 82967169--82967252 Score: 80
Period size: 22 Copynumber: 3.8 Consensus size: 21
82967159 TATTTTTATA
*
82967169 TATTTTTATTATTTTTTATTTT-
1 TATTTCTATT-TTTTTT-TTTTC
*
82967191 TATTTTTATTTTTATTTTTTTC
1 TATTTCTATTTTT-TTTTTTTC
82967213 TATTTCTATTTTTTTTTCTTTTC
1 TATTTCTA-TTTTTTTT-TTTTC
*
82967236 TCTTTCGTATTTTTTTT
1 TATTTC-TATTTTTTTT
82967253 ACTATTATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
21 7 0.13
22 23 0.42
23 23 0.42
24 2 0.04
ACGTcount: A:0.12, C:0.07, G:0.01, T:0.80
Consensus pattern (21 bp):
TATTTCTATTTTTTTTTTTTC
Found at i:82967308 original size:3 final size:3
Alignment explanation
Indices: 82967300--82967334 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
82967290 ATCATTGAGT
82967300 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
82967335 TATCTTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:82969760 original size:13 final size:13
Alignment explanation
Indices: 82969742--82969768 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82969732 GCTCGGCAGG
82969742 GACACGCCCGTGT
1 GACACGCCCGTGT
82969755 GACACGCCCGTGT
1 GACACGCCCGTGT
82969768 G
1 G
82969769 CGATTACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:82970599 original size:30 final size:30
Alignment explanation
Indices: 82970563--82970623 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
82970553 TAGTTTTCAG
* *
82970563 GATGCACACAGGTAGGCCACACGCCTATGT
1 GATGCACACAGGCAGGCCACACGCCCATGT
*
82970593 GATGCACACGGGCAGGCCACACGCCCATGT
1 GATGCACACAGGCAGGCCACACGCCCATGT
82970623 G
1 G
82970624 CTAGCCCGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.33, G:0.30, T:0.13
Consensus pattern (30 bp):
GATGCACACAGGCAGGCCACACGCCCATGT
Found at i:82980604 original size:26 final size:25
Alignment explanation
Indices: 82980564--82980785 Score: 125
Period size: 23 Copynumber: 9.2 Consensus size: 25
82980554 AGACTCACCA
*
82980564 CAACTCGTATGAGCTTACTGATATAT
1 CAACTCGTAAGAGCTTACTGAT-TAT
*
82980590 CGAA-TCGTAAGAGCTTACT-ATTTT
1 C-AACTCGTAAGAGCTTACTGATTAT
* ** *
82980614 CAACTCATTGGAGCTTACCG-TT-T
1 CAACTCGTAAGAGCTTACTGATTAT
*
82980637 CAACTCGTATGAGCTTACTGATATAT
1 CAACTCGTAAGAGCTTACTGAT-TAT
*
82980663 CGAA-TCGTAAGAGCTTACT-ATTTT
1 C-AACTCGTAAGAGCTTACTGATTAT
* ** *
82980687 CAACTCATTGGAGCTTACCG-TT-T
1 CAACTCGTAAGAGCTTACTGATTAT
*
82980710 CAACTCGTATGAGCTTACTG--T-T
1 CAACTCGTAAGAGCTTACTGATTAT
* *
82980732 CAGCTCG-ATAGAGCTTACCG-TT-T
1 CAACTCGTA-AGAGCTTACTGATTAT
*
82980755 CAACTC-AATAGAGCTTACTG-TTCAT
1 CAACTCGTA-AGAGCTTACTGATT-AT
82980780 CAACTC
1 CAACTC
82980786 AGGAGAAGCT
Statistics
Matches: 157, Mismatches: 25, Indels: 29
0.74 0.12 0.14
Matches are distributed among these distances:
21 1 0.01
22 17 0.11
23 59 0.38
24 33 0.21
25 12 0.08
26 31 0.20
27 4 0.03
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (25 bp):
CAACTCGTAAGAGCTTACTGATTAT
Found at i:82980683 original size:73 final size:73
Alignment explanation
Indices: 82980564--82980729 Score: 332
Period size: 73 Copynumber: 2.3 Consensus size: 73
82980554 AGACTCACCA
82980564 CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCTTACTATTTTCAACTCATTGGAGCT
1 CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCTTACTATTTTCAACTCATTGGAGCT
82980629 TACCGTTT
66 TACCGTTT
82980637 CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCTTACTATTTTCAACTCATTGGAGCT
1 CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCTTACTATTTTCAACTCATTGGAGCT
82980702 TACCGTTT
66 TACCGTTT
82980710 CAACTCGTATGAGCTTACTG
1 CAACTCGTATGAGCTTACTG
82980730 TTCAGCTCGA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 93 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (73 bp):
CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCTTACTATTTTCAACTCATTGGAGCT
TACCGTTT
Found at i:82983021 original size:27 final size:27
Alignment explanation
Indices: 82982991--82983168 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
82982981 ATATTGAGCC
* * *
82982991 CGCACACTCAATGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
82983018 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
82983045 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * **
82983073 CGCACACTTAGTGCCGCATGATCATTT
1 CGCACACTTAGTGCTACATAATCAACT
* **
82983100 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
82983127 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAATCA-ACT
82983154 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82983169 GTACAGTTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:82983132 original size:82 final size:81
Alignment explanation
Indices: 82983017--82983167 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
82983007 TATAATCAAC
* *
82983017 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
82983082 AGTGCCGCATGATCATT
65 AGTGCCGCATGATCATT
* ** *
82983099 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
82983163 AGTGC
65 AGTGC
82983168 TGTACAGTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGATCATT
Found at i:82991258 original size:27 final size:27
Alignment explanation
Indices: 82991228--82991405 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
82991218 ATATTGAGCC
* *
82991228 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
82991255 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
82991282 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * **
82991310 CGCACACTTAGTGCCGCATGATCATTT
1 CGCACACTTAGTGCTACATAATCAACT
* **
82991337 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
82991364 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAATCA-ACT
82991391 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82991406 GTACAGTTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:82991367 original size:82 final size:81
Alignment explanation
Indices: 82991254--82991404 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
82991244 TATAATCAAC
* *
82991254 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
82991319 AGTGCCGCATGATCATT
65 AGTGCCGCATGATCATT
* ** *
82991336 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
82991400 AGTGC
65 AGTGC
82991405 TGTACAGTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGATCATT
Found at i:82996258 original size:50 final size:50
Alignment explanation
Indices: 82996141--82996482 Score: 434
Period size: 50 Copynumber: 6.7 Consensus size: 50
82996131 ACATGCCAAA
* ** * *
82996141 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGGTGCCCAT
* * *
82996192 GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCCAT
* *
82996242 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCCAT
*
82996292 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCCAT
*
82996342 GCCATGTCCCAGATATGGTCTTACAGGGGACCTCTCATCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCCAT
* * * * *
82996392 GTCATGTCCCAGACATGGTCTTACAAGGGACCTCTAATGATCTTAAGGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTC---TCATC-T-CGG-TGCCCAT
* *
82996448 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
82996483 TTAGCCAAAT
Statistics
Matches: 259, Mismatches: 25, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
49 1 0.00
50 185 0.71
51 28 0.11
53 5 0.02
54 1 0.00
55 2 0.01
56 37 0.14
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCCAT
Found at i:82996413 original size:150 final size:155
Alignment explanation
Indices: 82996133--82996482 Score: 496
Period size: 150 Copynumber: 2.3 Consensus size: 155
82996123 TAATAATAAC
* **
82996133 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
*
82996198 TCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCT
65 TCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCT
* *
82996263 TACATGGGACCTCT-CG-TC-T-CGG
130 TACAAGGGACCTCTACGATCTTAAGG
* * *
82996285 -TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
* * * *
82996348 TCCCAGATATGGTCTTACAGGGGACCTCTCATCTCGGTGCCCATGTCATGTCCCAGACATGGTCT
65 TCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCT
*
82996413 TACAAGGGACCTCTAATGATCTTAAGG
130 TACAAGGGACCTCT-ACGATCTTAAGG
*
82996440 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
82996483 TTAGCCAAAT
Statistics
Matches: 174, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
149 1 0.01
150 94 0.54
151 34 0.20
152 1 0.01
153 2 0.01
154 1 0.01
155 2 0.01
156 39 0.22
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (155 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTT
ACAAGGGACCTCTACGATCTTAAGG
Found at i:82996598 original size:13 final size:13
Alignment explanation
Indices: 82996577--82996608 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
82996567 GCTTGGATCA
*
82996577 TCATCAAATAAAT
1 TCATAAAATAAAT
82996590 TCATAAAATAAAT
1 TCATAAAATAAAT
82996603 TCATAA
1 TCATAA
82996609 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:83009916 original size:20 final size:20
Alignment explanation
Indices: 83009891--83009929 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
83009881 AAAATTTCAA
83009891 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
83009911 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
83009930 AATAGCCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:83011212 original size:15 final size:15
Alignment explanation
Indices: 83011194--83011236 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
83011184 AATAGTTAAT
83011194 AATAAAATGATATAA
1 AATAAAATGATATAA
83011209 AATAAAAT-A-AT-A
1 AATAAAATGATATAA
83011221 AATAAAGATGATATAA
1 AATAAA-ATGATATAA
83011237 TATATAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 7 0.29
13 4 0.17
14 2 0.08
15 10 0.42
16 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AATAAAATGATATAA
Found at i:83011245 original size:28 final size:26
Alignment explanation
Indices: 83011190--83011247 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 26
83011180 AATAAATAGT
83011190 TAATAATAAAATGATATAAAATAAAA
1 TAATAATAAAATGATATAAAATAAAA
* *
83011216 TAATAAATAAAGATGATATAATATATAA
1 TAAT-AATAAA-ATGATATAAAATAAAA
83011244 TAAT
1 TAAT
83011248 TTACATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.14
27 6 0.21
28 18 0.64
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (26 bp):
TAATAATAAAATGATATAAAATAAAA
Found at i:83013749 original size:9 final size:8
Alignment explanation
Indices: 83013733--83013758 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
83013723 GATAATAATC
83013733 TCTTTTTT
1 TCTTTTTT
83013741 TCTTTTTT
1 TCTTTTTT
83013749 TCTTTTTT
1 TCTTTTTT
83013757 TC
1 TC
83013759 ATGATTTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TCTTTTTT
Found at i:83014630 original size:25 final size:25
Alignment explanation
Indices: 83014601--83014650 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
83014591 TAAATTGGTC
83014601 ATGACTCGAATTCCTAAACTACATT
1 ATGACTCGAATTCCTAAACTACATT
83014626 ATGACTCGAATTCCTAAACTACATT
1 ATGACTCGAATTCCTAAACTACATT
83014651 GTTAAGTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (25 bp):
ATGACTCGAATTCCTAAACTACATT
Found at i:83022691 original size:14 final size:14
Alignment explanation
Indices: 83022672--83022699 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83022662 AAATAAATAC
83022672 TTCAATCCTATAGT
1 TTCAATCCTATAGT
83022686 TTCAATCCTATAGT
1 TTCAATCCTATAGT
83022700 ATAGTGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
TTCAATCCTATAGT
Found at i:83025800 original size:21 final size:22
Alignment explanation
Indices: 83025762--83025805 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
83025752 TACTTTTGTA
* *
83025762 ATATCTTATTGTATTTTATATT
1 ATATATTATTGTAATTTATATT
83025784 ATATATTA-TGTAATTTATATT
1 ATATATTATTGTAATTTATATT
83025805 A
1 A
83025806 AATAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (22 bp):
ATATATTATTGTAATTTATATT
Found at i:83027165 original size:152 final size:153
Alignment explanation
Indices: 83026883--83027182 Score: 575
Period size: 152 Copynumber: 2.0 Consensus size: 153
83026873 AACAATCCCG
83026883 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
1 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
83026948 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
66 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
83027013 AAAGAGGAAATATCTCTTTCTTA
131 AAAGAGGAAATATCTCTTTCTTA
83027036 TGATA-TGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
1 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
* *
83027100 TATCCTCTATAATAGACAAACTTCCTCCATCTTGAAAAGACTTTAAAAGAAGTCTAAAACATAAG
66 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
83027165 AAAGAGGAAATATCTCTT
131 AAAGAGGAAATATCTCTT
83027183 CAGGCTTTGG
Statistics
Matches: 145, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
152 140 0.97
153 5 0.03
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (153 bp):
TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
AAAGAGGAAATATCTCTTTCTTA
Found at i:83033855 original size:43 final size:43
Alignment explanation
Indices: 83033807--83033969 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
83033797 ATCGAGATGT
*
83033807 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * *
83033850 GATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTGA
* * * * * *
83033893 GATTTCGTCTAAGACCTTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGA
* * *
83033936 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
83033970 TGTACAAGCT
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 87 0.89
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:83039232 original size:21 final size:19
Alignment explanation
Indices: 83039208--83039271 Score: 62
Period size: 21 Copynumber: 3.3 Consensus size: 19
83039198 AACTGTTCAA
83039208 CTCACACTGAGCTTTCATAAG
1 CTCACACT-AGCTTTCA-AAG
83039229 CTCACACTA-CTATTC-AA-
1 CTCACACTAGCT-TTCAAAG
83039246 CTCACACTAAGCTTTCACAAG
1 CTCACACT-AGCTTTCA-AAG
83039267 CTCAC
1 CTCAC
83039272 CCCCATAGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
17 8 0.22
18 6 0.16
19 4 0.11
20 6 0.16
21 13 0.35
ACGTcount: A:0.31, C:0.34, G:0.08, T:0.27
Consensus pattern (19 bp):
CTCACACTAGCTTTCAAAG
Found at i:83041094 original size:21 final size:21
Alignment explanation
Indices: 83041070--83041145 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 21
83041060 TGTCCTTGAT
* *
83041070 TCACACGGGCTTGTGCCTCTG
1 TCACACGGGCGTGTGCCTCTA
*
83041091 TCACACGAGCGTGTGCCTCTA
1 TCACACGGGCGTGTGCCTCTA
*
83041112 TCACAC-GGCAGTGTG-CTACTCG
1 TCACACGGGC-GTGTGCCT-CT-A
83041134 TCACACGGGCGT
1 TCACACGGGCGT
83041146 TTGGACCCCC
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.09
21 31 0.67
22 8 0.17
23 3 0.07
ACGTcount: A:0.16, C:0.33, G:0.28, T:0.24
Consensus pattern (21 bp):
TCACACGGGCGTGTGCCTCTA
Found at i:83048535 original size:14 final size:14
Alignment explanation
Indices: 83048516--83048543 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83048506 TAATCTCAAT
83048516 TTGCAACTATGTGA
1 TTGCAACTATGTGA
83048530 TTGCAACTATGTGA
1 TTGCAACTATGTGA
83048544 GAAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (14 bp):
TTGCAACTATGTGA
Found at i:83051609 original size:46 final size:46
Alignment explanation
Indices: 83051543--83051736 Score: 155
Period size: 46 Copynumber: 4.2 Consensus size: 46
83051533 CCCAAATAGG
* * *
83051543 GTCTTACACTGAC-ACATCTCGTA-GCCGATGCATGTCCCAAACAT
1 GTCTTACACTGGCTTCATCTCGTAGGCCGATGCATGTCCCAGACAT
* * *
83051587 GTCTTACACTGGCTTACGTCTCG-AGGCCTATGCATGTCTCAGACAT
1 GTCTTACACTGGCTT-CATCTCGTAGGCCGATGCATGTCCCAGACAT
* * * * * * *
83051633 GTCTTACACTAGCACTCGTCTC-AATGCCGATGCCATCTCCTAGACAT
1 GTCTTACACTGGC-TTCATCTCGTAGGCCGATG-CATGTCCCAGACAT
***
83051680 GGTCTTACACTGGCTCTCATAAGGT-GGCCGATGCATGTCCCAGACAT
1 -GTCTTACACTGGCT-TCATCTCGTAGGCCGATGCATGTCCCAGACAT
*
83051727 GTTTTACACT
1 GTCTTACACT
83051737 AGCTCACACA
Statistics
Matches: 117, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
44 12 0.10
45 1 0.01
46 58 0.50
47 24 0.21
48 22 0.19
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GTCTTACACTGGCTTCATCTCGTAGGCCGATGCATGTCCCAGACAT
Found at i:83051685 original size:94 final size:92
Alignment explanation
Indices: 83051566--83051739 Score: 215
Period size: 94 Copynumber: 1.9 Consensus size: 92
83051556 ACATCTCGTA
* * ** * *
83051566 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TACGTCTCGAGGCCTATGCATGTCTCAGA
1 GCCGATGCATCTCCCAAACATGTCTTACACTGGCTCT-CATAACGAGGCCGATGCATGTCCCAGA
83051630 CATGTCTTACACTAGCACTCGTCTCAAT
65 CATGTCTTACACTAGCACTCGTCTCAAT
* * * *
83051658 GCCGATGCCATCTCCTAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCATGTCCCAG
1 GCCGATG-CATCTCCCAAACAT-GTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAG
*
83051723 ACATGTTTTACACTAGC
64 ACATGTCTTACACTAGC
83051740 TCACACAAGT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
92 7 0.10
93 11 0.16
94 49 0.72
95 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATCTCCCAAACATGTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:83054641 original size:36 final size:36
Alignment explanation
Indices: 83054601--83054673 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
83054591 AAGTTAGTGG
83054601 ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
1 ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
83054637 ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
1 ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
83054673 A
1 A
83054674 ATGGTCTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (36 bp):
ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
Found at i:83058062 original size:26 final size:27
Alignment explanation
Indices: 83057982--83058071 Score: 78
Period size: 26 Copynumber: 3.4 Consensus size: 27
83057972 TTTTAGTTTT
* * *
83057982 TAATTTTTTCA-TTTTTATTTTAGAAA
1 TAATTTTTTAATTTTTTAATTTAAAAA
* *
83058008 TAA-TATATAATAATTTTTAATTTAAAAA
1 TAATTTTTTAAT--TTTTTAATTTAAAAA
* *
83058036 TATTTTTTTAATTTTTTAATTT-TAAA
1 TAATTTTTTAATTTTTTAATTTAAAAA
83058062 TAATTTTTTA
1 TAATTTTTTA
83058072 GAATTAAGGT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
25 4 0.08
26 15 0.30
27 10 0.20
28 15 0.30
29 6 0.12
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (27 bp):
TAATTTTTTAATTTTTTAATTTAAAAA
Found at i:83065133 original size:13 final size:13
Alignment explanation
Indices: 83065115--83065154 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
83065105 AGTTTGGCAA
83065115 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
83065128 TGCTTTTAAGAAG
1 TGCTTTTGAGAAG
*
83065141 TGCTTTTGAAAAG
1 TGCTTTTGAGAAG
83065154 T
1 T
83065155 TTAGTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:83076569 original size:24 final size:23
Alignment explanation
Indices: 83076542--83076616 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 23
83076532 ACAAAAAAGA
83076542 TTTGTCTAAGTCATTTCATTTCTT
1 TTTGTCTAAGTCATTTC-TTTCTT
* *
83076566 TTTGTCCAAG---TTGCTTCTCTT
1 TTTGTCTAAGTCATTTCTT-TCTT
*
83076587 TTTGTCTAACTCATTTCTTTTCTT
1 TTTGTCTAAGTCATTTC-TTTCTT
83076611 CTTTGT
1 -TTTGT
83076617 AAGTTTCAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
20 2 0.05
21 15 0.38
24 16 0.40
25 7 0.17
ACGTcount: A:0.12, C:0.20, G:0.09, T:0.59
Consensus pattern (23 bp):
TTTGTCTAAGTCATTTCTTTCTT
Found at i:83079019 original size:17 final size:18
Alignment explanation
Indices: 83078976--83079038 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
83078966 TTGATGATAC
83078976 CGATATTGATGATAGTGA
1 CGATATTGATGATAGTGA
*
83078994 CGATATTGATGCTAGT-A
1 CGATATTGATGATAGTGA
* *
83079011 CGTTATTGAAGATAGTGA
1 CGATATTGATGATAGTGA
83079029 C-ACTATTGAT
1 CGA-TATTGAT
83079039 CGTGACCTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
17 14 0.38
18 23 0.62
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.35
Consensus pattern (18 bp):
CGATATTGATGATAGTGA
Found at i:83080784 original size:9 final size:9
Alignment explanation
Indices: 83080770--83080813 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
83080760 CGTTCCATCA
83080770 TCCTTCTTT
1 TCCTTCTTT
83080779 TCCTTCTTT
1 TCCTTCTTT
*
83080788 TCTTTCTTT
1 TCCTTCTTT
*
83080797 TCTTTCTTT
1 TCCTTCTTT
*
83080806 CCCTTCTT
1 TCCTTCTT
83080814 CTTTGACTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (9 bp):
TCCTTCTTT
Found at i:83094168 original size:3 final size:3
Alignment explanation
Indices: 83094160--83094184 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
83094150 ATCGTTCTAC
83094160 TAG TAG TAG TAG TAG TAG TAG TAG T
1 TAG TAG TAG TAG TAG TAG TAG TAG T
83094185 TATTGAGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TAG
Found at i:83109530 original size:6 final size:6
Alignment explanation
Indices: 83109519--83109567 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
83109509 GTTTCCAAAC
* * *
83109519 ATGGAA ATGGAA ATGAAA ATGAAA ATGAAA ATGGAA ATGGAA ATGGAA
1 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA
83109567 A
1 A
83109568 ACTGCAATAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.16
Consensus pattern (6 bp):
ATGGAA
Found at i:83109765 original size:26 final size:26
Alignment explanation
Indices: 83109711--83109783 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 26
83109701 AATTTTCTCG
*
83109711 AAATTTTACTGAGGGTAAAATCATCA
1 AAATTTTACTGAGGGTAAAATCATAA
* * **
83109737 AAATTTTGCTGGGGGTAAAATTGTAAA
1 AAATTTTACTGAGGGTAAAATCAT-AA
**
83109764 AAAAATTACT-AGGGTAAAAT
1 AAATTTTACTGAGGGTAAAAT
83109784 TGAGATGAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 29 0.78
27 8 0.22
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (26 bp):
AAATTTTACTGAGGGTAAAATCATAA
Found at i:83111787 original size:43 final size:43
Alignment explanation
Indices: 83111711--83111895 Score: 210
Period size: 43 Copynumber: 4.3 Consensus size: 43
83111701 TTATCTAAAA
* * * *
83111711 AAACACCGCTAAAGGTCATGACCTTTAATGGCGCTTTCCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAACGACGCTTTCCCCAC
* * * * *
83111754 AAACGCCGTTAAAAGTCATAACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAACGACGCTTTCCCCAC
* *
83111797 AAATGCCGCTAAAAGTCATGACCTTTAACGACGCTTTTCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAACGACGCTTTCCCCAC
* * *
83111840 AAACGCAGCT-AAAGATCATGACCTTTAGCGACACTTTCCCCAC
1 AAACGCCGCTAAAAG-TCATGACCTTTAACGACGCTTTCCCCAC
* *
83111883 AAATGTCGCTAAA
1 AAACGCCGCTAAA
83111896 GACCGTGACC
Statistics
Matches: 120, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
42 4 0.03
43 114 0.95
44 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTCATGACCTTTAACGACGCTTTCCCCAC
Found at i:83111840 original size:86 final size:86
Alignment explanation
Indices: 83111716--83111895 Score: 245
Period size: 86 Copynumber: 2.1 Consensus size: 86
83111706 TAAAAAAACA
* * * * *
83111716 CCGCTAAAGGTCATGACCTTTAATGGCGCTTTCCCCACAAACGCCGTTAAA-AGTCATAACCTTT
1 CCGCTAAAAGTCATGACCTTTAACGACGCTTTCCCCACAAACGCAGCTAAAGA-TCATAACCTTT
* * *
83111780 AGCGGCGCTTTTCCCACAAATG
65 AGCGACACTTTCCCCACAAATG
* *
83111802 CCGCTAAAAGTCATGACCTTTAACGACGCTTTTCCCACAAACGCAGCTAAAGATCATGACCTTTA
1 CCGCTAAAAGTCATGACCTTTAACGACGCTTTCCCCACAAACGCAGCTAAAGATCATAACCTTTA
83111867 GCGACACTTTCCCCACAAATG
66 GCGACACTTTCCCCACAAATG
*
83111888 TCGCTAAA
1 CCGCTAAA
83111896 GACCGTGACC
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
86 81 0.99
87 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (86 bp):
CCGCTAAAAGTCATGACCTTTAACGACGCTTTCCCCACAAACGCAGCTAAAGATCATAACCTTTA
GCGACACTTTCCCCACAAATG
Found at i:83111989 original size:74 final size:74
Alignment explanation
Indices: 83111848--83111990 Score: 160
Period size: 74 Copynumber: 1.9 Consensus size: 74
83111838 ACAAACGCAG
* * * * * ** *
83111848 CTAAAGATCATGACCTTTAGCGACACTTTCCCCACAAATGTCGCTAAAGACCGTGACCTTTGGAA
1 CTAAAGATCATGACCTTTAGCGACACTTTCCCCAAAAACGCCGCTAAAGACCATAAAATTTGAAA
83111913 AAAACACCA
66 AAAACACCA
* * * ** *
83111922 CTAAAGATCATGACCTTTAGTGACACTTTTCTCAAAAACGCCGCTAAAGGTCATAAAATTTTAAA
1 CTAAAGATCATGACCTTTAGCGACACTTTCCCCAAAAACGCCGCTAAAGACCATAAAATTTGAAA
83111987 AAAA
66 AAAA
83111991 TAAAATATTA
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
74 55 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.24
Consensus pattern (74 bp):
CTAAAGATCATGACCTTTAGCGACACTTTCCCCAAAAACGCCGCTAAAGACCATAAAATTTGAAA
AAAACACCA
Found at i:83112003 original size:10 final size:10
Alignment explanation
Indices: 83111990--83112015 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
83111980 TTTTAAAAAA
83111990 ATAAAATATT
1 ATAAAATATT
83112000 ATAAAATATT
1 ATAAAATATT
83112010 ATAAAA
1 ATAAAA
83112016 GTCATGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
ATAAAATATT
Found at i:83112042 original size:47 final size:48
Alignment explanation
Indices: 83111966--83112059 Score: 122
Period size: 46 Copynumber: 2.0 Consensus size: 48
83111956 AAAACGCCGC
* * *
83111966 TAAAGGTCATAAAATTTTAAAAAAATAAAA-T-ATTAT-AAAATATTA
1 TAAAAGTCATAAAAATATAAAAAAATAAAATTCATTATCAAAATATTA
83112011 TAAAAGTCATGAAAAATATAAAAAAATTAAAATTCATTATCAAAATATT
1 TAAAAGTCAT-AAAAATATAAAAAAA-TAAAATTCATTATCAAAATATT
83112060 GAGAAGAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
45 9 0.22
46 13 0.32
47 5 0.12
48 1 0.02
49 5 0.12
50 8 0.20
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (48 bp):
TAAAAGTCATAAAAATATAAAAAAATAAAATTCATTATCAAAATATTA
Found at i:83115969 original size:3 final size:3
Alignment explanation
Indices: 83115963--83115991 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
83115953 TTTTTCTCTT
83115963 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
83115992 TACTAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:83116505 original size:14 final size:15
Alignment explanation
Indices: 83116466--83116496 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83116456 ACTATTTAAT
83116466 ATATAAATTAAAAAC
1 ATATAAATTAAAAAC
83116481 ATATAAATTAAAAAC
1 ATATAAATTAAAAAC
83116496 A
1 A
83116497 ATCACTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
ATATAAATTAAAAAC
Found at i:83116789 original size:8 final size:7
Alignment explanation
Indices: 83116768--83116921 Score: 67
Period size: 7 Copynumber: 21.3 Consensus size: 7
83116758 TACACTAATT
83116768 ACCCTAA
1 ACCCTAA
83116775 ACCCTAA
1 ACCCTAA
83116782 ACCCCT-A
1 A-CCCTAA
* *
83116789 ACACTTA
1 ACCCTAA
* *
83116796 ACCTTTA
1 ACCCTAA
*
83116803 ACCCTTA
1 ACCCTAA
83116810 ACCCTAA
1 ACCCTAA
*
83116817 ACCCATAC
1 ACCC-TAA
**
83116825 ACATTTAA
1 AC-CCTAA
* *
83116833 ATCTTAA
1 ACCCTAA
*
83116840 ACCATAA
1 ACCCTAA
83116847 ACCCTAA
1 ACCCTAA
*
83116854 ACCCCATA
1 ACCCTA-A
*
83116862 ACTCGTAA
1 AC-CCTAA
*
83116870 ACCCTTA
1 ACCCTAA
*
83116877 ACTCTTAA
1 AC-CCTAA
*
83116885 CCCCTAA
1 ACCCTAA
83116892 ACCCTAA
1 ACCCTAA
* *
83116899 GCCATAA
1 ACCCTAA
* *
83116906 AACATAA
1 ACCCTAA
83116913 ACCCTAA
1 ACCCTAA
83116920 AC
1 AC
83116922 TTCTTCCCCT
Statistics
Matches: 110, Mismatches: 30, Indels: 14
0.71 0.19 0.09
Matches are distributed among these distances:
6 3 0.03
7 84 0.76
8 21 0.19
9 2 0.02
ACGTcount: A:0.41, C:0.36, G:0.01, T:0.21
Consensus pattern (7 bp):
ACCCTAA
Found at i:83116887 original size:37 final size:35
Alignment explanation
Indices: 83116774--83116895 Score: 97
Period size: 37 Copynumber: 3.3 Consensus size: 35
83116764 AATTACCCTA
* * *
83116774 AACCCTAAACCCC-TAACACTTAACCTTTAACCCTT
1 AACCCTAAACCCCATAACTCTAAACCCTTAA-CCTT
* * *
83116809 AACCCTAAA-CCCATACACATTTAAA-TCTTAAACCATA
1 AACCCTAAACCCCATA-AC-TCTAAACCCTT-AACC-TT
83116846 AACCCTAAACCCCATAACTCGTAAACCCTTAACTCTT
1 AACCCTAAACCCCATAACTC-TAAACCCTTAAC-CTT
83116883 AACCCCTAAACCC
1 AA-CCCTAAACCC
83116896 TAAGCCATAA
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
34 3 0.04
35 11 0.16
36 7 0.10
37 27 0.40
38 20 0.29
ACGTcount: A:0.39, C:0.38, G:0.01, T:0.23
Consensus pattern (35 bp):
AACCCTAAACCCCATAACTCTAAACCCTTAACCTT
Found at i:83117254 original size:15 final size:15
Alignment explanation
Indices: 83117231--83117281 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
83117221 ATACCCATGG
*
83117231 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
83117246 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
*
83117261 CCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
83117275 CCTTAAA
1 CCATAAA
83117282 TATTAAACCC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 11 0.38
15 18 0.62
ACGTcount: A:0.47, C:0.29, G:0.02, T:0.22
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:83117298 original size:7 final size:7
Alignment explanation
Indices: 83117234--83117297 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
83117224 CCCATGGCCA
83117234 TTAAACC
1 TTAAACC
83117241 TTAAACC
1 TTAAACC
*
83117248 ATAAAACC
1 -TTAAACC
*
83117256 CTAAACC
1 TTAAACC
* *
83117263 ATAGACC
1 TTAAACC
83117270 TTAAACC
1 TTAAACC
**
83117277 TTAAATA
1 TTAAACC
83117284 TTAAACC
1 TTAAACC
*
83117291 CTAAACC
1 TTAAACC
83117298 CCAAAATAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
7 38 0.86
8 6 0.14
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (7 bp):
TTAAACC
Found at i:83117461 original size:37 final size:39
Alignment explanation
Indices: 83117420--83117502 Score: 125
Period size: 37 Copynumber: 2.2 Consensus size: 39
83117410 TGTTTAAGGT
* * *
83117420 TTTAGGGGTTATAGTTTAGTGTTTATGGTT-TTT-AGGG
1 TTTAGGGGTTATAGATTAGTATTTATGATTCTTTGAGGG
83117457 TTTAGGGGTTATAGATTAGTATTTATGATTCTTTGAGGG
1 TTTAGGGGTTATAGATTAGTATTTATGATTCTTTGAGGG
83117496 TTTAGGG
1 TTTAGGG
83117503 TTTTAGGGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 27 0.66
38 3 0.07
39 11 0.27
ACGTcount: A:0.19, C:0.01, G:0.31, T:0.48
Consensus pattern (39 bp):
TTTAGGGGTTATAGATTAGTATTTATGATTCTTTGAGGG
Found at i:83117611 original size:40 final size:42
Alignment explanation
Indices: 83117521--83117611 Score: 125
Period size: 41 Copynumber: 2.2 Consensus size: 42
83117511 GTTATATAAC
* *
83117521 TTTTAGCGGCGTTTTGACCACAAACGTCACTATTACTCTAGT
1 TTTTAGCGGCATTTTGACCAAAAACGTCACTATTACTCTAGT
*
83117563 TTTTAGCGGCATTTT-ACCAAAAACG-CTACTATTGCTCT-GT
1 TTTTAGCGGCATTTTGACCAAAAACGTC-ACTATTACTCTAGT
83117603 TTTTAGCGG
1 TTTTAGCGG
83117612 TGTTTTTGCT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
40 12 0.27
41 19 0.42
42 14 0.31
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (42 bp):
TTTTAGCGGCATTTTGACCAAAAACGTCACTATTACTCTAGT
Found at i:83121528 original size:6 final size:6
Alignment explanation
Indices: 83121512--83121557 Score: 76
Period size: 6 Copynumber: 7.7 Consensus size: 6
83121502 ATTTTAAATT
83121512 TTTAGTA TTTATA TTTATA TTTATA TTTATA TTTATA TTTA-A TTTA
1 TTTA-TA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTA
83121558 GTCTTTATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 5 0.13
6 30 0.77
7 4 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (6 bp):
TTTATA
Found at i:83122743 original size:298 final size:293
Alignment explanation
Indices: 83122157--83122753 Score: 1113
Period size: 298 Copynumber: 2.0 Consensus size: 293
83122147 AATATATCTC
83122157 ATATTTTATTCAATAACTTTAAAAAACTTGGGAATTAAATTTTGGGTAAACTACAAATGGTCATC
1 ATATTTTATTCAATAACTTTAAAAAACTTGGGAATTAAATTTTGGGTAAACTACAAATGGTCATC
*
83122222 CAACTATACTCATGTTTTTGTTTTGGTCACTTAACTTTAAAAGTTTTCAATTTAGGTACTAACAT
66 CAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACAT
*
83122287 TTGAATTCATTTCTATTTTGATCATCTGCCGATTGATAATGAAAAGTCTTTTTGTTTATATTTTT
131 TTGAATTCATTTCTATTTTGATCATCCGCCGATTGATAATGAAAAGTCTTTTTGTTTATATTTTT
*
83122352 AAGAAGTTAGTGTTAAAAATTAACTGAGCACCATTAAAAATAATAGAATATACAAATTTTAAAAA
196 AAGAAGTTAGTGTTAAAAATTAACTGAACACCATTAAAAATAATAGAATATACAAATTTTAAAAA
83122417 TATAATGTATAATAAAATTATATAAATAATTTA
261 TATAATGTATAATAAAATTATATAAATAATTTA
83122450 ATATTTTATTCAATAACTTTAAAAAACTTGGGAAATTAAATTTTGGGTAAACTACAAATGGTCAT
1 ATATTTTATTCAATAACTTTAAAAAACTTGGG-AATTAAATTTTGGGTAAACTACAAATGGTCAT
83122515 CCAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACA
65 CCAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACA
83122580 TTTGAATTCATTTCTATTTTGATCATCCGCCGTTAAATTGATAATGAAAAGTCTTTTTGTTTATA
130 TTTGAATTCATTTCTATTTTGATCATCCGCCG----ATTGATAATGAAAAGTCTTTTTGTTTATA
*
83122645 TTTTTAAGAAGTTAGTGTTAAAAATTAACTGAACACTATTAAAAATAATAGAATATACAAATTTT
191 TTTTTAAGAAGTTAGTGTTAAAAATTAACTGAACACCATTAAAAATAATAGAATATACAAATTTT
83122710 AAAAATATAATGTATAATAAAATTATATAAATAATTTA
256 AAAAATATAATGTATAATAAAATTATATAAATAATTTA
83122748 ATATTT
1 ATATTT
83122754 GTAAAAGTAA
Statistics
Matches: 295, Mismatches: 4, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
293 32 0.11
294 127 0.43
298 136 0.46
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (293 bp):
ATATTTTATTCAATAACTTTAAAAAACTTGGGAATTAAATTTTGGGTAAACTACAAATGGTCATC
CAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACAT
TTGAATTCATTTCTATTTTGATCATCCGCCGATTGATAATGAAAAGTCTTTTTGTTTATATTTTT
AAGAAGTTAGTGTTAAAAATTAACTGAACACCATTAAAAATAATAGAATATACAAATTTTAAAAA
TATAATGTATAATAAAATTATATAAATAATTTA
Found at i:83123504 original size:19 final size:17
Alignment explanation
Indices: 83123468--83123506 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
83123458 ATATAGAAAA
*
83123468 AAATTATAAAATTTTAT
1 AAATTATAAAAATTTAT
83123485 AAATTCATAAGAAATTTAT
1 AAATT-ATAA-AAATTTAT
83123504 AAA
1 AAA
83123507 AATGTAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (17 bp):
AAATTATAAAAATTTAT
Found at i:83123524 original size:18 final size:19
Alignment explanation
Indices: 83123500--83123543 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
83123490 CATAAGAAAT
83123500 TTATAAAA-ATGTAAAGAAA
1 TTATAAAATATGTAAA-AAA
*
83123519 -TATAAAATTTGTAAAAAA
1 TTATAAAATATGTAAAAAA
83123537 TTATAAA
1 TTATAAA
83123544 TTATCGAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (19 bp):
TTATAAAATATGTAAAAAA
Found at i:83123748 original size:10 final size:9
Alignment explanation
Indices: 83123727--83123854 Score: 80
Period size: 9 Copynumber: 13.4 Consensus size: 9
83123717 TTTTGATGCA
*
83123727 TTTTATAGT
1 TTTTATAAT
*
83123736 TTTTATGAT
1 TTTTATAAT
*
83123745 TTTTATAAAA
1 TTTTAT-AAT
83123755 TTTTATAAT
1 TTTTATAAT
**
83123764 TTTTACGAT
1 TTTTATAAT
83123773 TTTTATAAT
1 TTTTATAAT
83123782 TTTTAATAATT
1 TTTT-ATAA-T
*
83123793 TTTTATTAAAA
1 TTTTA-T-AAT
*
83123804 TTTAATAATTTT
1 TTTTATAA---T
83123816 TTTTATAAT
1 TTTTATAAT
* *
83123825 TTTAATTGAT
1 TTTTA-TAAT
83123835 TTTTAT--T
1 TTTTATAAT
83123842 TTTTATAAT
1 TTTTATAAT
83123851 TTTT
1 TTTT
83123855 TTTGCCACAT
Statistics
Matches: 92, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
7 7 0.08
9 46 0.50
10 20 0.22
11 10 0.11
12 9 0.10
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:83123757 original size:28 final size:28
Alignment explanation
Indices: 83123726--83123795 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
83123716 TTTTTGATGC
* *
83123726 ATTTTATAGTTTTTATGATTTTTATAAA
1 ATTTTATAATTTTTACGATTTTTATAAA
83123754 ATTTTATAATTTTTACGATTTTTAT-AA
1 ATTTTATAATTTTTACGATTTTTATAAA
*
83123781 TTTTTAATAATTTTT
1 ATTTT-ATAATTTTT
83123796 TATTAAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 6 0.16
28 32 0.84
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.63
Consensus pattern (28 bp):
ATTTTATAATTTTTACGATTTTTATAAA
Found at i:83123828 original size:21 final size:21
Alignment explanation
Indices: 83123772--83123830 Score: 84
Period size: 21 Copynumber: 2.8 Consensus size: 21
83123762 ATTTTTACGA
83123772 TTTTTATAATTTTTAATAATTT
1 TTTTTATAA-TTTTAATAATTT
*
83123794 TTTATTA-AAATTTAATAATTT
1 TTT-TTATAATTTTAATAATTT
83123815 TTTTTATAATTTTAAT
1 TTTTTATAATTTTAAT
83123831 TGATTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 3 0.09
21 22 0.67
22 5 0.15
23 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTATAATTTTAATAATTT
Found at i:83123855 original size:10 final size:10
Alignment explanation
Indices: 83123735--83123855 Score: 58
Period size: 10 Copynumber: 12.5 Consensus size: 10
83123725 CATTTTATAG
*
83123735 TTTTTATGA-
1 TTTTTATAAT
*
83123744 TTTTTATAAA
1 TTTTTATAAT
*
83123754 ATTTTATAA-
1 TTTTTATAAT
**
83123763 TTTTTACGA-
1 TTTTTATAAT
83123772 TTTTTATAAT
1 TTTTTATAAT
*
83123782 TTTTAATAAT
1 TTTTTATAAT
*
83123792 TTTTTATTAAA
1 TTTTTA-TAAT
* *
83123803 ATTTAATAAT
1 TTTTTATAAT
*
83123813 TTTTT-TTAT
1 TTTTTATAAT
**
83123822 AATTT-TAAT
1 TTTTTATAAT
83123831 TGATTTT-T-AT
1 T--TTTTATAAT
83123841 TTTTTATAAT
1 TTTTTATAAT
83123851 TTTTT
1 TTTTT
83123856 TTGCCACATC
Statistics
Matches: 84, Mismatches: 21, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
8 4 0.05
9 31 0.37
10 38 0.45
11 11 0.13
ACGTcount: A:0.31, C:0.01, G:0.02, T:0.65
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:83124668 original size:29 final size:29
Alignment explanation
Indices: 83124636--83124693 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
83124626 CTGGTTTTTC
* *
83124636 AAGTTAGTTAGTCTGTTAG-TAGTTAGCTA
1 AAGTCAGTTAGT-TGTTAGCTAGGTAGCTA
*
83124665 AAGTCAGTTTGTTGTTAGCTAGGTAGCTA
1 AAGTCAGTTAGTTGTTAGCTAGGTAGCTA
83124694 TTACTCTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (29 bp):
AAGTCAGTTAGTTGTTAGCTAGGTAGCTA
Found at i:83132808 original size:30 final size:30
Alignment explanation
Indices: 83132772--83132840 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
83132762 GTCACAATTA
*
83132772 ACCA-TTTCTCGTTATAGACGTAAC-GAGGCT
1 ACCATTTTCT-GTTAGAGACGTAACAGA-GCT
* *
83132802 ACCATTTTCTGTTAGATACTTAACAGAGCT
1 ACCATTTTCTGTTAGAGACGTAACAGAGCT
83132832 ACCATTTTC
1 ACCATTTTC
83132841 CATCCCCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 27 0.79
31 7 0.21
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (30 bp):
ACCATTTTCTGTTAGAGACGTAACAGAGCT
Found at i:83134141 original size:49 final size:47
Alignment explanation
Indices: 83134045--83134150 Score: 117
Period size: 49 Copynumber: 2.3 Consensus size: 47
83134035 AAGGGACAAT
* *
83134045 GGGGGAGAGGGAAAGAATAAAAGTAGGAGGAGGGATGGTAGATAAGA
1 GGGGGAGAGGGAAAGAATAAAAGAAGGAGGAGGGATGGTAGAGAAGA
* * * * *
83134092 GGGGGAGAGGGAGAGAGAATCAGAGAAGGGGGAGGGATGGTGGGGAAGA
1 GGGGGAGAGGGA-A-AGAATAAAAGAAGGAGGAGGGATGGTAGAGAAGA
83134141 --GGGAGAGGGA
1 GGGGGAGAGGGA
83134151 TGGGAGAGCA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
47 22 0.44
48 1 0.02
49 27 0.54
ACGTcount: A:0.37, C:0.01, G:0.55, T:0.08
Consensus pattern (47 bp):
GGGGGAGAGGGAAAGAATAAAAGAAGGAGGAGGGATGGTAGAGAAGA
Found at i:83134242 original size:30 final size:30
Alignment explanation
Indices: 83134171--83134242 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
83134161 GTGATAGGGG
* *
83134171 ATGGAAAATGGCAGCTTCGTTAAGTATCTA
1 ATGGAAAATGGTAGCTCCGTTAAGTATCTA
* * *
83134201 ATGGAAAATGGTAGCTCCGTTACGTTTGTA
1 ATGGAAAATGGTAGCTCCGTTAAGTATCTA
83134231 ATGGAAAATGGT
1 ATGGAAAATGGT
83134243 TAGTGGTGAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (30 bp):
ATGGAAAATGGTAGCTCCGTTAAGTATCTA
Found at i:83143393 original size:40 final size:40
Alignment explanation
Indices: 83143333--83143516 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
83143323 TATTCGAATG
* *
83143333 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTGACT
* * * *
83143374 ATATCC-GACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
83143413 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
83143453 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
83143493 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
83143517 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 12 0.10
40 104 0.85
41 6 0.05
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:83151129 original size:27 final size:27
Alignment explanation
Indices: 83151088--83151246 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
83151078 AGGAAACGTC
*
83151088 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
83151115 CTAGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
83151141 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
83151169 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
83151196 CTGCTGGCTCTGCTACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
83151223 CTGGTGACTCCGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
83151247 GCAGCCTCAC
Statistics
Matches: 111, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
26 11 0.10
27 96 0.86
28 4 0.04
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:83151167 original size:54 final size:54
Alignment explanation
Indices: 83151085--83151246 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
83151075 TGGAGGAAAC
*
83151085 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
83151139 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * * * *
83151193 GTTCTGCTGGCTCTGCTACAA-TATCTGTATCTGGTGACTCCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
83151246 G
1 G
83151247 GCAGCCTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 13 0.13
54 86 0.87
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Done.