Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 250 of 344
Found at i:83151240 original size:81 final size:80
Alignment explanation
Indices: 83151088--83151246 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 80
83151078 AGGAAACGTC
* *
83151088 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
83151153 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
83151169 CTGGTGGCTCTGCCAC-ATATATCTGTTCT-GCTGGCTCTGCTACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGATCTAG-TGGCTCTGCCACATATATCTGT-CCTGGTGAC
* *
83151231 TCCGTCACAATATCTG
63 TACGCCACAATATCTG
83151247 GCAGCCTCAC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
GCCACAATATCTGAT
Found at i:83158707 original size:27 final size:27
Alignment explanation
Indices: 83158671--83158734 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
83158661 GTCTTTGAAT
83158671 TTTGATGAAATGAGCTATTTG-GGG-CTAA
1 TTTG-TGAAATGAG-T-TTTGAGGGACTAA
83158699 TTTGTGAAAATGAGTTTTGAGGGACTAA
1 TTTGTG-AAATGAGTTTTGAGGGACTAA
*
83158727 ATTGTGAA
1 TTTGTGAA
83158735 TTAAATATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
26 4 0.12
27 8 0.25
28 20 0.62
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (27 bp):
TTTGTGAAATGAGTTTTGAGGGACTAA
Found at i:83158709 original size:28 final size:28
Alignment explanation
Indices: 83158678--83158734 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
83158668 AATTTTGATG
*
83158678 AAATGAGCTATTTG-GGG-CTAATTTGTGA
1 AAATGAG-T-TTTGAGGGACTAAATTGTGA
83158706 AAATGAGTTTTGAGGGACTAAATTGTGA
1 AAATGAGTTTTGAGGGACTAAATTGTGA
83158734 A
1 A
83158735 TTAAATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 4 0.15
28 18 0.69
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (28 bp):
AAATGAGTTTTGAGGGACTAAATTGTGA
Found at i:83163040 original size:40 final size:40
Alignment explanation
Indices: 83162957--83163177 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
83162947 ACCCAAGTAT
** * *
83162957 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
83162995 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
83163035 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * **
83163075 CTTCGGGTTTTGGCCCGGATATAGTAACTCTCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * **
83163115 CTTCGGATCTTAGTCCGGATATACTCACTTAGCACAAAACC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
* *
83163156 CTTCGGGACTTACCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
83163178 CATTCGAATA
Statistics
Matches: 148, Mismatches: 31, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 95 0.64
41 26 0.18
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:83175857 original size:26 final size:25
Alignment explanation
Indices: 83175828--83175977 Score: 87
Period size: 26 Copynumber: 6.0 Consensus size: 25
83175818 CTTATTAGTG
*
83175828 TCCCGATATATGGCTCTTCGTAAGCT
1 TCCCGATATATGGCTCTTCG-GAGCT
* *
83175854 TCCCGTTGAT-TGGCTCTTTGTGAGCT
1 TCCCGAT-ATATGGCTCTTCG-GAGCT
** *
83175880 TCTTGAT-TAATGGCTCTCCGGAGCT
1 TCCCGATAT-ATGGCTCTTCGGAGCT
* *
83175905 TCCCAATAT-TGGCTTGCTT--GAACT
1 TCCCGATATATGGC-T-CTTCGGAGCT
* * *
83175929 TCCCAATATATGGCTATCCGGAGCT
1 TCCCGATATATGGCTCTTCGGAGCT
* *
83175954 TCCCGTTA-ATGGCTCTACGGAGCT
1 TCCCGATATATGGCTCTTCGGAGCT
83175978 ACTTGTTTTT
Statistics
Matches: 95, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
23 1 0.01
24 33 0.35
25 24 0.25
26 35 0.37
27 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (25 bp):
TCCCGATATATGGCTCTTCGGAGCT
Found at i:83175955 original size:25 final size:24
Alignment explanation
Indices: 83175889--83175957 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
83175879 TTCTTGATTA
83175889 ATGGCTCTCCGGAGCTTCCCAATAT
1 ATGGCT-TCCGGAGCTTCCCAATAT
** *
83175914 -TGGCTTGCTTGAACTTCCCAATAT
1 ATGGCTT-CCGGAGCTTCCCAATAT
83175938 ATGGCTATCCGGAGCTTCCC
1 ATGGCT-TCCGGAGCTTCCC
83175958 GTTAATGGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
23 1 0.03
24 19 0.54
25 14 0.40
26 1 0.03
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.30
Consensus pattern (24 bp):
ATGGCTTCCGGAGCTTCCCAATAT
Found at i:83176433 original size:17 final size:17
Alignment explanation
Indices: 83176389--83176434 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
83176379 GAAATACATG
*
83176389 GAAATG-ATGGTAT-AT
1 GAAATGAATGATATAAT
*
83176404 GAAAT-ATTGATATAAT
1 GAAATGAATGATATAAT
83176420 GAAATGAATGATATA
1 GAAATGAATGATATA
83176435 TGTTTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 10 0.40
16 7 0.28
17 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.33
Consensus pattern (17 bp):
GAAATGAATGATATAAT
Found at i:83182615 original size:48 final size:48
Alignment explanation
Indices: 83182563--83182663 Score: 139
Period size: 48 Copynumber: 2.1 Consensus size: 48
83182553 TATGGTGTCA
**
83182563 GCATCGATATATGATCCCATGTAAGACCATGTCTAGGACATGGCATTG
1 GCATCGATATATGATCCCAAATAAGACCATGTCTAGGACATGGCATTG
* * * *
83182611 GCATCGTTATGTGATCCCAAATAAGACCATGTTTGGGACATGGCATTG
1 GCATCGATATATGATCCCAAATAAGACCATGTCTAGGACATGGCATTG
*
83182659 ACATC
1 GCATC
83182664 AATGTGAGAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
GCATCGATATATGATCCCAAATAAGACCATGTCTAGGACATGGCATTG
Found at i:83185557 original size:25 final size:25
Alignment explanation
Indices: 83185481--83185568 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 25
83185471 ACCAAACCAC
* * *
83185481 GCCTTTGTAGTAAGTCACCTATAAA
1 GCCTTTGTGGTGAGTTACCTATAAA
* * * ***
83185506 GCCTTTGTGATGATTTACATGGGAA
1 GCCTTTGTGGTGAGTTACCTATAAA
*
83185531 GCTTTTGTGGTGAGTTACCTATAAA
1 GCCTTTGTGGTGAGTTACCTATAAA
*
83185556 GCCTTTCTGGTGA
1 GCCTTTGTGGTGA
83185569 TTTGCTTGGG
Statistics
Matches: 45, Mismatches: 18, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (25 bp):
GCCTTTGTGGTGAGTTACCTATAAA
Found at i:83185636 original size:25 final size:25
Alignment explanation
Indices: 83185608--83185655 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
83185598 TTTGGTAAGC
* *
83185608 CTTTGTGGCAGGTTATCTGTAAATT
1 CTTTGTGGCAAGTTACCTGTAAATT
*
83185633 CTTTGTGGTAAGTTACCTGTAAA
1 CTTTGTGGCAAGTTACCTGTAAA
83185656 GACTATGTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (25 bp):
CTTTGTGGCAAGTTACCTGTAAATT
Found at i:83191778 original size:20 final size:20
Alignment explanation
Indices: 83191753--83191804 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
83191743 TTCGCTTCTC
83191753 CCACGCCCGTGTATGAAGGG
1 CCACGCCCGTGTATGAAGGG
83191773 CCACGCCCGTGTATGAAGGG
1 CCACGCCCGTGTATGAAGGG
*
83191793 CCACGCCTGTGT
1 CCACGCCCGTGT
83191805 TGTTTCGACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (20 bp):
CCACGCCCGTGTATGAAGGG
Found at i:83193821 original size:36 final size:36
Alignment explanation
Indices: 83193774--83193844 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
83193764 GGTTGAAGGG
83193774 TTAATACTCTGTGCATGCTCCTCCTCCATTCGAATT
1 TTAATACTCTGTGCATGCTCCTCCTCCATTCGAATT
83193810 TTAATACTCTGTGCATGCTCCTCCTCCATTCGAAT
1 TTAATACTCTGTGCATGCTCCTCCTCCATTCGAAT
83193845 CGCACCTCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.20, C:0.31, G:0.11, T:0.38
Consensus pattern (36 bp):
TTAATACTCTGTGCATGCTCCTCCTCCATTCGAATT
Found at i:83198516 original size:39 final size:40
Alignment explanation
Indices: 83198413--83198597 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
83198403 TTGAATGATG
* * * *
83198413 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
83198452 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
83198493 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
83198532 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
83198571 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83198598 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:83198619 original size:79 final size:79
Alignment explanation
Indices: 83198468--83198630 Score: 206
Period size: 79 Copynumber: 2.1 Consensus size: 79
83198458 ACTAAGATCT
* **
83198468 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
83198533 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
83198547 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
* *
83198610 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
83198626 GAAGG
1 GAAGG
83198631 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:83201413 original size:30 final size:30
Alignment explanation
Indices: 83201379--83201447 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
83201369 ATGGGGCGGA
83201379 CCGTGTGTCACACACGGCCTAGACACTTGC
1 CCGTGTGTCACACACGGCCTAGACACTTGC
*
83201409 CCGTGTGTCACACACGGCCTAGTCACTTGC
1 CCGTGTGTCACACACGGCCTAGACACTTGC
83201439 CCGTGTGTC
1 CCGTGTGTC
83201448 TAACCGTGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.16, C:0.36, G:0.25, T:0.23
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCTAGACACTTGC
Found at i:83206259 original size:3 final size:3
Alignment explanation
Indices: 83206251--83206289 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
83206241 AGTTCGTGTG
83206251 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
83206290 CAATGTCATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:83206787 original size:48 final size:48
Alignment explanation
Indices: 83206716--83206842 Score: 175
Period size: 48 Copynumber: 2.6 Consensus size: 48
83206706 ATGAGATCCC
* * *
83206716 GTGTAAGACCATGTCTGGGACATGGCGTCGGTGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGTGATGATATGTGTGCCA
* * **
83206764 GTGTAAGATCATGTCTGGAACATGGCATCAGTGATGATATGTGTGTTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGTGATGATATGTGTGCCA
83206812 GTGTAAGACCATGTCT-GAGACATGGCATCGG
1 GTGTAAGACCATGTCTGGA-ACATGGCATCGG
83206843 CATCGATTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 2 0.03
48 67 0.97
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGAACATGGCATCGGTGATGATATGTGTGCCA
Found at i:83212734 original size:4 final size:4
Alignment explanation
Indices: 83212715--83212757 Score: 68
Period size: 4 Copynumber: 10.2 Consensus size: 4
83212705 TTTTTGTCTA
83212715 AGTT AAGTT AAGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT A
1 AGTT -AGTT -AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT A
83212758 AATTTACTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 29 0.76
5 9 0.24
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (4 bp):
AGTT
Found at i:83233717 original size:37 final size:38
Alignment explanation
Indices: 83233667--83233744 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
83233657 TACCTTGAAC
83233667 AAGGTGGTTATTATTGTTT-AAAAAAATAGAAAAGTTA
1 AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
83233704 AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
1 AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
83233742 AAG
1 AAG
83233745 TTTTAAACTG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 19 0.47
38 21 0.52
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.33
Consensus pattern (38 bp):
AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
Found at i:83233846 original size:20 final size:20
Alignment explanation
Indices: 83233823--83233860 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83233813 ATATTCATTT
83233823 ATTTATACATATTTTTATAA
1 ATTTATACATATTTTTATAA
**
83233843 ATTTATATGTATTTTTAT
1 ATTTATACATATTTTTAT
83233861 CAAAAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
ATTTATACATATTTTTATAA
Found at i:83238602 original size:7 final size:6
Alignment explanation
Indices: 83238562--83238622 Score: 68
Period size: 6 Copynumber: 9.8 Consensus size: 6
83238552 TTAAAATAAT
* * * *
83238562 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAA TTTTAA GTTTTAA GTTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA -TTTTAA -TTTTAA
83238612 TTTTAA TTTTA
1 TTTTAA TTTTA
83238623 GGAATAAAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
6 40 0.75
7 13 0.25
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (6 bp):
TTTTAA
Found at i:83238609 original size:20 final size:19
Alignment explanation
Indices: 83238558--83238622 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 19
83238548 AAGTTTAAAA
* *
83238558 TAATTTTTA-TTTTTATTT
1 TAATTTTAAGTTTTAATTT
* * *
83238576 TTATTTTTATTTTTAATTT
1 TAATTTTAAGTTTTAATTT
83238595 TAAGTTTTAAGTTTTAATTT
1 TAA-TTTTAAGTTTTAATTT
83238615 TAATTTTA
1 TAATTTTA
83238623 GGAATAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
18 8 0.20
19 15 0.38
20 17 0.43
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (19 bp):
TAATTTTAAGTTTTAATTT
Found at i:83238797 original size:9 final size:9
Alignment explanation
Indices: 83238771--83238804 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
83238761 TATCTAACAC
83238771 TTTTTAATT
1 TTTTTAATT
* *
83238780 TTATAAATT
1 TTTTTAATT
83238789 TTTTTAATT
1 TTTTTAATT
83238798 TTTTTAA
1 TTTTTAA
83238805 ATATTGAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTAATT
Found at i:83242399 original size:34 final size:34
Alignment explanation
Indices: 83242351--83242422 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
83242341 GCATTTCTGT
*
83242351 TACTGTTACTATAATGCGCTAAGGCCC-ACACTGA
1 TACTATTACTATAATGCGCTAAGGCCCTA-ACTGA
* *
83242385 TACTATTACTATAATGGGCTATGGCCCTAACTGA
1 TACTATTACTATAATGCGCTAAGGCCCTAACTGA
83242419 TACT
1 TACT
83242423 GGACTATCAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (34 bp):
TACTATTACTATAATGCGCTAAGGCCCTAACTGA
Found at i:83244328 original size:47 final size:45
Alignment explanation
Indices: 83244182--83244451 Score: 154
Period size: 47 Copynumber: 5.8 Consensus size: 45
83244172 ATACGTGCTA
* * **
83244182 ATGCATGTCCCAGAAAATGTCTTACACTAGCACGAAACT-TA-GCCG
1 ATGCATGTCCCAG-ACATGTCTTACACTGGCAC-TCACTCTACGCCG
* * * * * *
83244227 ATGCATGTCCTAGACACGTCTTACACTCGCTAACATCA-TCGAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGC--AC-TCACTCTACGCCG
83244274 ATGCATGTCCCAGACATGTCTTACACTGGCACTCACCTCTACGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCACTCA-CTCTACGCCG
* * * * * *
83244320 ATGCCATGTCTCATACATGGTCTTACACGGGCTA-TCA-TGATGCGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCACT-CTAC-GCCG
* * * * * * *
83244368 ATGCATGTCCTAGACATGTCTTACAATAGCCCTCGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCACTC-ACTCTACGCCG
* *
83244414 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCAC
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAC
83244452 ATAACCCCAT
Statistics
Matches: 169, Mismatches: 40, Indels: 30
0.71 0.17 0.13
Matches are distributed among these distances:
44 17 0.10
45 15 0.09
46 32 0.19
47 69 0.41
48 35 0.21
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACTCACTCTACGCCG
Found at i:83244328 original size:94 final size:93
Alignment explanation
Indices: 83244181--83244438 Score: 245
Period size: 94 Copynumber: 2.8 Consensus size: 93
83244171 TATACGTGCT
* **
83244181 AATGCATGTCCCAGAAAATGTCTTACACTAGCACGAAACT-TAGCCGATG-CATGTCCTAGACA-
1 AATGCATGTCCCAG-ACATGTCTTACACTAGCACTCAACTCTAGCCGATGCCATGTCCTAGACAT
*
83244243 CGTCTTACACTCGCTAACATCATCGAGGCC
65 CGTCTTACACGCGCTAACATCAT-GAGGCC
* * *
83244273 AATGCATGTCCCAGACATGTCTTACACTGGCACTCACCTCTACGCCGATGCCATGT-CTCATACA
1 AATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCT-AGACA
* * * * * *
83244337 TGGTCTTACACGGGCTATCATGATGCGGCT
64 TCGTCTTACACGCGCTAACATCATGAGGCC
* * * * ** * *
83244367 GATGCATGTCCTAGACATGTCTTACAATAGCCCTCGTCTCAATGCCGATGCCATGTCCCAGACAT
1 AATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCTAGACAT
*
83244432 GGTCTTA
65 CGTCTTA
83244439 TACTGGCTCT
Statistics
Matches: 136, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
91 20 0.15
92 16 0.12
93 9 0.07
94 72 0.53
95 19 0.14
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (93 bp):
AATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTAGCCGATGCCATGTCCTAGACATC
GTCTTACACGCGCTAACATCATGAGGCC
Found at i:83248749 original size:13 final size:13
Alignment explanation
Indices: 83248730--83248768 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
83248720 CAATACAAAA
83248730 TGGTTATATGAAT
1 TGGTTATATGAAT
*
83248743 TGTTTATATGGAA-
1 TGGTTATAT-GAAT
83248756 TGGTTATATGAAT
1 TGGTTATATGAAT
83248769 CAATTATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 3 0.14
13 16 0.73
14 3 0.14
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
TGGTTATATGAAT
Found at i:83251364 original size:15 final size:17
Alignment explanation
Indices: 83251344--83251376 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
83251334 CGAACCCTAG
83251344 CTTTCTT-TTTAT-TTT
1 CTTTCTTGTTTATGTTT
83251359 CTTTCTTGTTTATGTTT
1 CTTTCTTGTTTATGTTT
83251376 C
1 C
83251377 GGAAATAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.73
Consensus pattern (17 bp):
CTTTCTTGTTTATGTTT
Found at i:83256292 original size:35 final size:35
Alignment explanation
Indices: 83256246--83256316 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
83256236 GTTTATCAAC
*
83256246 ATTTCCTCAGATGGCATCTAGAGTTGGTGATGCAT
1 ATTTCCCCAGATGGCATCTAGAGTTGGTGATGCAT
83256281 ATTTCCCCAGATGGCATCTAGAGTTGGTGATGCAT
1 ATTTCCCCAGATGGCATCTAGAGTTGGTGATGCAT
83256316 A
1 A
83256317 GTCACTTAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (35 bp):
ATTTCCCCAGATGGCATCTAGAGTTGGTGATGCAT
Found at i:83257794 original size:41 final size:41
Alignment explanation
Indices: 83257712--83257794 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
83257702 AGCGGCTTGA
* *
83257712 GAAGTTTGTTTGATACTCGTCCCTTGATCTTACATCTATTG
1 GAAGTTTGTTTGATACTCGTCCCTTGATCCTACATCCATTG
*
83257753 GAAGTTTGTTTGATACTCGTCCCTTGATCCTACGTCCATTG
1 GAAGTTTGTTTGATACTCGTCCCTTGATCCTACATCCATTG
83257794 G
1 G
83257795 GCCTGAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.18, C:0.22, G:0.19, T:0.41
Consensus pattern (41 bp):
GAAGTTTGTTTGATACTCGTCCCTTGATCCTACATCCATTG
Found at i:83263027 original size:28 final size:28
Alignment explanation
Indices: 83262994--83263049 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
83262984 CAATCAAATG
83262994 TGCAAAATGGCCAAGATGAAAAATGTTT
1 TGCAAAATGGCCAAGATGAAAAATGTTT
83263022 TGCAAAATGGCCAAGATGAAAAATGTTT
1 TGCAAAATGGCCAAGATGAAAAATGTTT
83263050 ACTTATTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (28 bp):
TGCAAAATGGCCAAGATGAAAAATGTTT
Found at i:83264587 original size:71 final size:63
Alignment explanation
Indices: 83264434--83264588 Score: 166
Period size: 71 Copynumber: 2.3 Consensus size: 63
83264424 TACATACTTC
* ** *
83264434 AATAATTCATGCAAATATAATATAGAAAATGATAAATAACGACATAAATTACATAATATACAT
1 AATATTTCATGCAAATATAATATAGAAAACAATAAATAACAACATAAATTACATAATATACAT
* * *
83264497 TATCATTTCATGCAGATATAATCATAGAAAACAATGAATATAACAATATAAATTACATAATATAT
1 AAT-ATTTCATGCAAATATAAT-ATAGAAAACAAT-AA-ATAACAACATAAATTAC---ATA-AT
83264562 ATACAAT
58 ATAC-AT
83264569 AATATTTCATGCAAATATAA
1 AATATTTCATGCAAATATAA
83264589 CTTAAAATAA
Statistics
Matches: 74, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
63 2 0.03
64 16 0.22
65 10 0.14
66 2 0.03
67 15 0.20
70 3 0.04
71 22 0.30
72 4 0.05
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (63 bp):
AATATTTCATGCAAATATAATATAGAAAACAATAAATAACAACATAAATTACATAATATACAT
Found at i:83264904 original size:20 final size:19
Alignment explanation
Indices: 83264864--83264914 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
83264854 GAAACGATTA
*
83264864 ATATATAT-AAAACATACT
1 ATATATATAAAAACATAAT
*
83264882 ATATGATATAAAAACTTAAT
1 ATAT-ATATAAAAACATAAT
*
83264902 ATATTTATAAAAA
1 ATATATATAAAAA
83264915 TAATAATATG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 4 0.14
19 12 0.43
20 12 0.43
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (19 bp):
ATATATATAAAAACATAAT
Found at i:83265057 original size:7 final size:7
Alignment explanation
Indices: 83265045--83265080 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
83265035 TTATATGTAC
83265045 TAATAAA
1 TAATAAA
83265052 TAATAAA
1 TAATAAA
83265059 TAATAAAA
1 TAAT-AAA
*
83265067 TAATATA
1 TAATAAA
83265074 TAATAAA
1 TAATAAA
83265081 ATGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:83265069 original size:15 final size:15
Alignment explanation
Indices: 83265045--83265082 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
83265035 TTATATGTAC
83265045 TAAT-AAATAATAAA
1 TAATAAAATAATAAA
*
83265059 TAATAAAATAATATA
1 TAATAAAATAATAAA
83265074 TAATAAAAT
1 TAATAAAAT
83265083 GAAGATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAATAAAATAATAAA
Found at i:83265076 original size:19 final size:19
Alignment explanation
Indices: 83265050--83265178 Score: 56
Period size: 21 Copynumber: 6.8 Consensus size: 19
83265040 TGTACTAATA
83265050 AATA-ATAAATAATAAAAT
1 AATATATAAATAATAAAAT
* *
83265068 AATATATAATAAAATGAAGAT
1 AATATATAA-ATAAT-AAAAT
**
83265089 AATATAGGGAATAATATATAAT
1 AATATA-TAAATAATA-A-AAT
* *
83265111 AAAATATATAAT-ATACAAT
1 AATATATA-AATAATAAAAT
* * *
83265130 AAAATCTATA-AATAAAAT
1 AATATATAAATAATAAAAT
83265148 -ATATA-AAAT-AT-AAAT
1 AATATATAAATAATAAAAT
*
83265163 AACATGATAAATAATA
1 AATAT-ATAAATAATA
83265179 CATAAATAAA
Statistics
Matches: 80, Mismatches: 17, Indels: 26
0.65 0.14 0.21
Matches are distributed among these distances:
15 4 0.05
16 7 0.09
17 4 0.05
18 15 0.19
19 16 0.20
20 5 0.06
21 18 0.22
22 11 0.14
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (19 bp):
AATATATAAATAATAAAAT
Found at i:83265111 original size:7 final size:7
Alignment explanation
Indices: 83265099--83265204 Score: 55
Period size: 7 Copynumber: 15.9 Consensus size: 7
83265089 AATATAGGGA
83265099 ATAATAT
1 ATAATAT
83265106 ATAATA-
1 ATAATAT
83265112 A-AATAT
1 ATAATAT
83265118 ATAATAT
1 ATAATAT
*
83265125 ACAATA-
1 ATAATAT
*
83265131 A-AATCT
1 ATAATAT
83265137 ATAA-AT
1 ATAATAT
*
83265143 AAAATAT
1 ATAATAT
*
83265150 ATAAAAT
1 ATAATAT
*
83265157 ATAAATAAC
1 AT-AAT-AT
* *
83265166 ATGATAA
1 ATAATAT
*
83265173 ATAATAC
1 ATAATAT
83265180 ATAA-AT
1 ATAATAT
*
83265186 A-AAAAT
1 ATAATAT
*
83265192 ATTATAT
1 ATAATAT
83265199 ATAATA
1 ATAATA
83265205 ATTTTACATG
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
5 9 0.12
6 13 0.18
7 45 0.61
8 4 0.05
9 3 0.04
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (7 bp):
ATAATAT
Found at i:83265145 original size:13 final size:13
Alignment explanation
Indices: 83265121--83265320 Score: 56
Period size: 13 Copynumber: 14.8 Consensus size: 13
83265111 AAAATATATA
83265121 ATATACAATAAAAT
1 ATATA-AATAAAAT
*
83265135 CTATAAATAAAAT
1 ATATAAATAAAAT
83265148 ATATAAAATATAAAT
1 ATAT-AAATA-AAAT
83265163 AACATGATAAAT--AAT
1 ---AT-ATAAATAAAAT
*
83265178 ACATAAATAAAA-
1 ATATAAATAAAAT
* *
83265190 ATAT-TAT-ATAT
1 ATATAAATAAAAT
* * *
83265201 A-ATAATTTTACAT
1 ATATAA-ATAAAAT
* *
83265214 GTATAAATAATAT
1 ATATAAATAAAAT
* *
83265227 TTATAAAAATAAAT
1 ATATAAATA-AAAT
*
83265241 AATATATATAAAAT
1 -ATATAAATAAAAT
*
83265255 ATTTAAA-ATAAAT
1 ATATAAATA-AAAT
*
83265268 AATATATATAAAAT
1 -ATATAAATAAAAT
*
83265282 ATTTAAA-ATAAAT
1 ATATAAATA-AAAT
*
83265295 AATATATATAAAAT
1 -ATATAAATAAAAT
*
83265309 ATTTAAAATAAA
1 ATAT-AAATAAA
83265321 TAAATTATAT
Statistics
Matches: 135, Mismatches: 29, Indels: 44
0.65 0.14 0.21
Matches are distributed among these distances:
10 4 0.03
11 9 0.07
12 7 0.05
13 48 0.36
14 44 0.33
15 15 0.11
18 6 0.04
19 2 0.01
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (13 bp):
ATATAAATAAAAT
Found at i:83265173 original size:32 final size:32
Alignment explanation
Indices: 83265108--83265176 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
83265098 AATAATATAT
*
83265108 AATAAAATATATAATATACAATAAAATCTATA
1 AATAAAATATATAATATACAATAAAATCGATA
*
83265140 AATAAAATATATAAAATATA-AATAACAT-GATA
1 AATAAAATATAT--AATATACAATAAAATCGATA
83265172 AATAA
1 AATAA
83265177 TACATAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 20 0.61
33 7 0.21
34 6 0.18
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.29
Consensus pattern (32 bp):
AATAAAATATATAATATACAATAAAATCGATA
Found at i:83265188 original size:47 final size:50
Alignment explanation
Indices: 83265137--83265310 Score: 119
Period size: 47 Copynumber: 3.4 Consensus size: 50
83265127 AATAAAATCT
83265137 ATAAATAAAATATATAAAATATAAATAACATG-ATAAATAATA-CAT-AA
1 ATAAATAAAATATATAAAATATAAATAACATGTATAAATAATATCATAAA
* * ** * *
83265184 ATAAA-AATATTATATATAATA-ATTTTACATGTATAAATAATATTTATAAAA
1 ATAAATAA-AATATATAAAATATAAATAACATGTATAAATAATA-TCAT-AAA
* * * *
83265235 ATAAATAATATATATAAAATATTTAAAATAA-ATAATATATATAAAATAT-TTAAA
1 ATAAATAAAATATATAAAATA--T-AAATAACAT-GTATA-A-ATAATATCATAAA
*
83265289 ATAAATAATATATATAAAATAT
1 ATAAATAAAATATATAAAATAT
83265311 TTAAAATAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 23
0.72 0.11 0.17
Matches are distributed among these distances:
46 9 0.09
47 26 0.27
49 2 0.02
51 17 0.17
52 3 0.03
54 26 0.27
55 8 0.08
56 2 0.02
57 5 0.05
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (50 bp):
ATAAATAAAATATATAAAATATAAATAACATGTATAAATAATATCATAAA
Found at i:83265251 original size:9 final size:9
Alignment explanation
Indices: 83265228--83265342 Score: 106
Period size: 9 Copynumber: 12.7 Consensus size: 9
83265218 AAATAATATT
83265228 TATA-AAAA
1 TATATAAAA
* *
83265236 TAAATAATA
1 TATATAAAA
83265245 TATATAAAA
1 TATATAAAA
*
83265254 TATTTAAAA
1 TATATAAAA
* *
83265263 TAAATAATA
1 TATATAAAA
83265272 TATATAAAA
1 TATATAAAA
*
83265281 TATTTAAAA
1 TATATAAAA
* *
83265290 TAAATAATA
1 TATATAAAA
83265299 TATATAAAA
1 TATATAAAA
*
83265308 TATTTAAAA
1 TATATAAAA
*
83265317 TAAATAAATTA
1 TATATAAA--A
83265328 TATATAAAA
1 TATATAAAA
*
83265337 TGTATA
1 TATATA
83265343 TATATAAAAG
Statistics
Matches: 83, Mismatches: 21, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
8 3 0.04
9 72 0.87
11 8 0.10
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.37
Consensus pattern (9 bp):
TATATAAAA
Found at i:83265255 original size:18 final size:18
Alignment explanation
Indices: 83265216--83265309 Score: 98
Period size: 18 Copynumber: 5.2 Consensus size: 18
83265206 TTTTACATGT
*
83265216 ATAAATAATATTTATAAAA
1 ATAAATAATATATAT-AAA
83265235 ATAAATAATATATATAAA
1 ATAAATAATATATATAAA
** * * *
83265253 ATATTTAAAATAAATAAT
1 ATAAATAATATATATAAA
* * *
83265271 ATATATAAAATATTTAAA
1 ATAAATAATATATATAAA
83265289 ATAAATAATATATATAAA
1 ATAAATAATATATATAAA
83265307 ATA
1 ATA
83265310 TTTAAAATAA
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
18 48 0.77
19 14 0.23
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAAATAATATATATAAA
Found at i:83265270 original size:27 final size:27
Alignment explanation
Indices: 83265232--83265337 Score: 194
Period size: 27 Copynumber: 3.9 Consensus size: 27
83265222 AATATTTATA
83265232 AAAATAAATAATATATATAAAATATTT
1 AAAATAAATAATATATATAAAATATTT
83265259 AAAATAAATAATATATATAAAATATTT
1 AAAATAAATAATATATATAAAATATTT
83265286 AAAATAAATAATATATATAAAATATTT
1 AAAATAAATAATATATATAAAATATTT
83265313 AAAATAAATAAATTATATATAAAAT
1 AAAATAAAT-AA-TATATATAAAAT
83265338 GTATATATAT
Statistics
Matches: 77, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
27 63 0.82
28 2 0.03
29 12 0.16
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (27 bp):
AAAATAAATAATATATATAAAATATTT
Found at i:83266894 original size:90 final size:90
Alignment explanation
Indices: 83266780--83267096 Score: 456
Period size: 90 Copynumber: 3.5 Consensus size: 90
83266770 AATATTCTTA
* * * * *
83266780 ATCTTCTCCCTGTCAAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTTCGATGCAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCGATGTAAACAC
* * *
83266845 AAGAATGTCAGATCTGTTATCTTTG
66 ACGAATGTCAGATCTGCTATCTTCG
* * *
83266870 ATTTGCTCCCCGTCTAATACAGAGACGTCAAACCTGTCATTTTCGATCTGCTTCGATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCGATGTAAACAC
*
83266935 ACGAATGTCAGATCTACTATCTTCG
66 ACGAATGTCAGATCTGCTATCTTCG
*
83266960 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCTTT-GATCTGCTTCGATGTAAACA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCAT-TTTCGATCTGCTTCGATGTAAACA
* *
83267024 CACGAATTTTAGATCTGCTATCTTCG
65 CACGAATGTCAGATCTGCTATCTTCG
* * *
83267050 ATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTCGAT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGAT
83267097 TTGTTCCCTG
Statistics
Matches: 202, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
89 2 0.01
90 197 0.98
91 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (90 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCGATGTAAACAC
ACGAATGTCAGATCTGCTATCTTCG
Found at i:83267002 original size:45 final size:44
Alignment explanation
Indices: 83266795--83267129 Score: 196
Period size: 45 Copynumber: 7.5 Consensus size: 44
83266785 CTCCCTGTCA
* * * * *
83266795 AATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTTCGATGCA
1 AATACAGAGATGTCAAATCTGTCATCTTCGATCTGCTCCCAT-CT
* * * * * *
83266840 AACACA-AGAATGTCAGATCTGTTATCTTTGATTTGCTCCCCGTCT
1 AATACAGAG-ATGTCAAATCTGTCATCTTCGATCTGCT-CCCATCT
* * * * * *
83266885 AATACAGAGACGTCAAACCTGTCATTTTCGATCTGCTTCGATGT
1 AATACAGAGATGTCAAATCTGTCATCTTCGATCTGCTCCCATCT
* * *
83266929 AA-ACACACGAATGTCAGATCT-ACTATCTTCGATCTGCTCCCCATCT
1 AATACAGA-G-ATGTCAAATCTGTC-ATCTTCGATCTGCT-CCCATCT
* * * * * *
83266975 AATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCGATGT
1 AATACAGAGATGTCAAATCTGTCATCTTCGATCTGCTCCCATCT
* * * * *
83267019 AA-ACACACGAATTTTAGATCTG-CTATCTTCGATCTGCTTCCCGTCT
1 AATACAGA-G-ATGTCAAATCTGTC-ATCTTCGATCTGC-TCCCATCT
* * * *
83267065 AATACAGAGATGCCAAATCTGTCATCTTCGATTTGTTCCC-TGT
1 AATACAGAGATGTCAAATCTGTCATCTTCGATCTGCTCCCATCT
*
83267108 CAATACAGAGATGGCAAATCTG
1 -AATACAGAGATGTCAAATCTG
83267130 CTATCTACAT
Statistics
Matches: 213, Mismatches: 61, Indels: 33
0.69 0.20 0.11
Matches are distributed among these distances:
43 10 0.05
44 41 0.19
45 134 0.63
46 20 0.09
47 8 0.04
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (44 bp):
AATACAGAGATGTCAAATCTGTCATCTTCGATCTGCTCCCATCT
Found at i:83278061 original size:43 final size:44
Alignment explanation
Indices: 83278005--83278092 Score: 110
Period size: 43 Copynumber: 2.0 Consensus size: 44
83277995 TAATATATAT
** *
83278005 ATAATAATATTTCATGCAAATATAACTTAA-AAT-AATAACATAA
1 ATAATAATATTTCACACAAATATAA-TAAACAATAAATAACATAA
83278048 ATAATCAAT-TTTCACACAAATATAATAAACAATAAATAACATAA
1 ATAAT-AATATTTCACACAAATATAATAAACAATAAATAACATAA
83278092 A
1 A
83278093 AGTAAAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
42 3 0.08
43 22 0.56
44 14 0.36
ACGTcount: A:0.58, C:0.11, G:0.01, T:0.30
Consensus pattern (44 bp):
ATAATAATATTTCACACAAATATAATAAACAATAAATAACATAA
Found at i:83278340 original size:20 final size:19
Alignment explanation
Indices: 83278305--83278370 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
83278295 AACGATTAAT
83278305 ATATATATATATAAAACATA
1 ATATATATATA-AAAACATA
* *
83278325 CTATATGATATAAAAACTTA
1 ATATAT-ATATAAAAACATA
* *
83278345 ATATATTTATAAAAATAATA
1 ATATATATATAAAAA-CATA
83278365 ATATAT
1 ATATAT
83278371 TAAATAGGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
19 8 0.21
20 25 0.66
21 5 0.13
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (19 bp):
ATATATATATAAAAACATA
Found at i:83278502 original size:7 final size:7
Alignment explanation
Indices: 83278490--83278532 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
83278480 TTATATGTAC
83278490 TAATAAA
1 TAATAAA
83278497 TAATAAA
1 TAATAAA
83278504 TAATAAA
1 TAATAAA
83278511 TAATAAAA
1 TAAT-AAA
*
83278519 TAATATA
1 TAATAAA
83278526 TAATAAA
1 TAATAAA
83278533 ATGAAGATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
TAATAAA
Found at i:83278522 original size:22 final size:21
Alignment explanation
Indices: 83278490--83278532 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
83278480 TTATATGTAC
83278490 TAATAAATAATAAATAATAAA
1 TAATAAATAATAAATAATAAA
*
83278511 TAATAAAATAATATATAATAAA
1 TAAT-AAATAATAAATAATAAA
83278533 ATGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
TAATAAATAATAAATAATAAA
Found at i:83278528 original size:19 final size:19
Alignment explanation
Indices: 83278502--83278658 Score: 54
Period size: 21 Copynumber: 7.7 Consensus size: 19
83278492 ATAAATAATA
83278502 AATA-ATAAATAATAAAAT
1 AATATATAAATAATAAAAT
* *
83278520 AATATATAATAAAATGAAGAT
1 AATATATAA-ATAAT-AAAAT
**
83278541 AATATAGGGAATAATATATAAT
1 AATATA-TAAATAATA-A-AAT
83278563 AAAATATATAATATATAATAAAAT
1 --AATATAT-A-A-ATAATAAAAT
* *
83278587 CTATATATAAAATCTATAAAAT
1 -AATATAT-AAAT-AATAAAAT
* *
83278609 -ATAAATAACATGAT-AAAT
1 AATATATAA-ATAATAAAAT
*
83278627 AATACATAAAT-A-AAAAT
1 AATATATAAATAATAAAAT
*
83278644 ATTATATATAATAAT
1 AATATATA-AATAAT
83278659 TTTACATGTA
Statistics
Matches: 105, Mismatches: 16, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
17 11 0.10
18 13 0.12
19 16 0.15
20 12 0.11
21 17 0.16
22 11 0.10
23 8 0.08
24 9 0.09
25 2 0.02
26 6 0.06
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (19 bp):
AATATATAAATAATAAAAT
Found at i:83278563 original size:7 final size:7
Alignment explanation
Indices: 83278551--83278656 Score: 55
Period size: 7 Copynumber: 15.9 Consensus size: 7
83278541 AATATAGGGA
83278551 ATAATAT
1 ATAATAT
83278558 ATAATA-
1 ATAATAT
83278564 A-AATAT
1 ATAATAT
83278570 ATAATAT
1 ATAATAT
83278577 ATAATA-
1 ATAATAT
*
83278583 A-AATCT
1 ATAATAT
83278589 AT-ATAT
1 ATAATAT
* *
83278595 AAAATCT
1 ATAATAT
*
83278602 ATAAAAT
1 ATAATAT
*
83278609 ATAAATAAC
1 AT-AAT-AT
* *
83278618 ATGATAA
1 ATAATAT
*
83278625 ATAATAC
1 ATAATAT
83278632 ATAA-AT
1 ATAATAT
*
83278638 A-AAAAT
1 ATAATAT
*
83278644 ATTATAT
1 ATAATAT
83278651 ATAATA
1 ATAATA
83278657 ATTTTACATG
Statistics
Matches: 73, Mismatches: 17, Indels: 18
0.68 0.16 0.17
Matches are distributed among these distances:
5 9 0.12
6 13 0.18
7 44 0.60
8 4 0.05
9 3 0.04
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (7 bp):
ATAATAT
Found at i:83278571 original size:14 final size:15
Alignment explanation
Indices: 83278490--83278657 Score: 80
Period size: 15 Copynumber: 10.9 Consensus size: 15
83278480 TTATATGTAC
*
83278490 TAATAAATAAT-AAA
1 TAATATATAATAAAA
*
83278504 TAATAAATAATAAAA
1 TAATATATAATAAAA
83278519 TAATATATAATAAAA
1 TAATATATAATAAAA
* *
83278534 TGAAGATA-ATATAGGGAA
1 T-AATATATA-ATA--AAA
83278552 TAATATATAATAAAA
1 TAATATATAATAAAA
83278567 T-ATATAATATATAATAA
1 TAATAT-ATA-ATAA-AA
*
83278584 -AATCTATATATAAAA
1 TAATATATA-ATAAAA
* *
83278599 T-CTATAAAATATAAA
1 TAATATATAATA-AAA
* *
83278614 TAACATGATAA-ATAA
1 TAATAT-ATAATAAAA
*
83278629 TACATAAATAA-AAATA
1 TA-ATATATAATAAA-A
*
83278645 TTATATATAATAA
1 TAATATATAATAA
83278658 TTTTACATGT
Statistics
Matches: 119, Mismatches: 18, Indels: 32
0.70 0.11 0.19
Matches are distributed among these distances:
14 18 0.15
15 52 0.44
16 29 0.24
17 16 0.13
18 4 0.03
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (15 bp):
TAATATATAATAAAA
Found at i:83278598 original size:13 final size:14
Alignment explanation
Indices: 83278574--83278614 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
83278564 AAATATATAA
83278574 TATATAATAAAATC
1 TATATAATAAAATC
83278588 TATAT-ATAAAATC
1 TATATAATAAAATC
*
83278601 TATAAAATATAAAT
1 TATATAATA-AAAT
83278615 AACATGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 12 0.50
14 8 0.33
15 4 0.17
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (14 bp):
TATATAATAAAATC
Found at i:83278654 original size:15 final size:15
Alignment explanation
Indices: 83278636--83278749 Score: 63
Period size: 15 Copynumber: 7.4 Consensus size: 15
83278626 TAATACATAA
83278636 ATAAAAATATTATAT
1 ATAAAAATATTATAT
* * *
83278651 ATAATAATTTTACAT
1 ATAAAAATATTATAT
* * * *
83278666 GTATAAATAATATTT
1 ATAAAAATATTATAT
*
83278681 ATAAAAATAAATAATAT
1 ATAAAAAT--ATTATAT
*
83278698 ATATAAAATATT-TAAA
1 ATA-AAAATATTAT-AT
83278714 ATAAATAA-ATTATAT
1 ATAAA-AATATTATAT
*
83278729 AT-AAAATGTATATAT
1 ATAAAAATAT-TATAT
83278744 ATAAAA
1 ATAAAA
83278750 GGATTAAAAT
Statistics
Matches: 71, Mismatches: 19, Indels: 17
0.66 0.18 0.16
Matches are distributed among these distances:
13 2 0.03
14 3 0.04
15 42 0.59
16 12 0.17
17 7 0.10
18 5 0.07
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.39
Consensus pattern (15 bp):
ATAAAAATATTATAT
Found at i:83278690 original size:19 final size:19
Alignment explanation
Indices: 83278668--83278705 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
83278658 TTTTACATGT
*
83278668 ATAAATAATATTTATAAAA
1 ATAAATAATATATATAAAA
83278687 ATAAATAATATATATAAAA
1 ATAAATAATATATATAAAA
83278706 TATTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAAATAATATATATAAAA
Found at i:83278723 original size:31 final size:28
Alignment explanation
Indices: 83278674--83278735 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
83278664 ATGTATAAAT
*
83278674 AATATTTATAAAAATAAATAATATATATAA
1 AATATTTAAAAAAATAAAT--TATATATAA
83278704 AATATTTAAAATAAATAAATTATATATAA
1 AATATTTAAAA-AAATAAATTATATATAA
83278733 AAT
1 AAT
83278736 GTATATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.40
30 10 0.33
31 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
AATATTTAAAAAAATAAATTATATATAA
Found at i:83282121 original size:20 final size:18
Alignment explanation
Indices: 83282079--83282121 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
83282069 TTCTTTATCA
*
83282079 TCAATTATATAAATGCAT
1 TCAATTATATAAATCCAT
*
83282097 CCAATTATAATCAAATCCAT
1 TCAATTAT-AT-AAATCCAT
83282117 TCAAT
1 TCAAT
83282122 AACAATTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.35
19 2 0.10
20 11 0.55
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (18 bp):
TCAATTATATAAATCCAT
Found at i:83285723 original size:40 final size:40
Alignment explanation
Indices: 83285633--83285857 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
83285623 TTGAATGATG
* * *
83285633 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * * *
83285673 TCTAGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83285713 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83285752 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83285792 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
83285833 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83285858 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.21
40 116 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83285879 original size:119 final size:119
Alignment explanation
Indices: 83285633--83285890 Score: 265
Period size: 119 Copynumber: 2.2 Consensus size: 119
83285623 TTGAATGATG
* * *
83285633 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCTAGACTAAGATCCGAAGGTATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCAGACTAAGATCCGAAGGCATTT
* ** *
83285698 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * * *
83285752 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCAGACTAAGAT-CCGAAGGCAT
* * * * *
83285815 TTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
83285872 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
83285891 TACGTGATTT
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 81 0.70
120 31 0.27
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCAGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:83293737 original size:40 final size:40
Alignment explanation
Indices: 83293648--83293871 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
83293638 TTGAATGATG
* * *
83293648 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
83293687 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
83293727 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83293766 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83293806 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
83293847 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83293872 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 55 0.34
40 106 0.65
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83293783 original size:79 final size:80
Alignment explanation
Indices: 83293648--83293871 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 80
83293638 TTGAATGATG
* * * * * *
83293648 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCA-ATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
83293710 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
83293727 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
83293790 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * *
83293806 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
83293871 G
66 G
83293872 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
78 17 0.14
79 58 0.46
80 48 0.38
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:83293889 original size:80 final size:79
Alignment explanation
Indices: 83293685--83293894 Score: 223
Period size: 80 Copynumber: 2.7 Consensus size: 79
83293675 CTAAGTGACC
* ** * * *
83293685 AATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTTCGGGCTAAGCCCGAAGGCA
1 AATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCA
83293748 TTGGTGCGAGTTACTA
64 TTGGTGCGAGTTACTA
* ** *
83293764 AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCAT
*
83293829 TTGTGCGAGTTACTA
65 TGGTGCGAGTTACTA
* *
83293844 TAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 -AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
83293895 ATTTCGAAGG
Statistics
Matches: 114, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 51 0.45
80 59 0.52
81 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATT
GGTGCGAGTTACTA
Found at i:83299228 original size:43 final size:42
Alignment explanation
Indices: 83299089--83299231 Score: 162
Period size: 42 Copynumber: 3.4 Consensus size: 42
83299079 TAGGATACAA
*
83299089 ATCTGGGATATGGCATCATTATGAGATTTCGTGTAAGACCAT
1 ATCTGGGATATGGCATCAATATGAGATTTCGTGTAAGACCAT
* * * *
83299131 ATCTAGAATATGGCATCGATATGAGATTTCGTGTAAGATCAT
1 ATCTGGGATATGGCATCAATATGAGATTTCGTGTAAGACCAT
* * ** *
83299173 AGT-TGGGCTATTGGCATCAATACGAGATCCCATGTAAGACCAT
1 A-TCTGGGATA-TGGCATCAATATGAGATTTCGTGTAAGACCAT
*
83299216 ATCTGGGATATTGCAT
1 ATCTGGGATATGGCAT
83299232 TGGTGTGGTA
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 48 0.59
43 34 0.41
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
ATCTGGGATATGGCATCAATATGAGATTTCGTGTAAGACCAT
Found at i:83299933 original size:39 final size:40
Alignment explanation
Indices: 83299884--83299971 Score: 124
Period size: 39 Copynumber: 2.2 Consensus size: 40
83299874 CGTTTGAATG
*
83299884 AAAAATGCCGCTAAAGAAAGAGCATTAGCGGCGC-TTTTT
1 AAAAACGCCGCTAAAGAAAGAGCATTAGCGGCGCTTTTTT
** **
83299923 AAAAACGCCGCTAAAGATTGAGTTTTAGCGGCGCTTTTTT
1 AAAAACGCCGCTAAAGAAAGAGCATTAGCGGCGCTTTTTT
83299963 AAAAACGCC
1 AAAAACGCC
83299972 TCTATATGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 29 0.67
40 14 0.33
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGAAAGAGCATTAGCGGCGCTTTTTT
Found at i:83300029 original size:40 final size:38
Alignment explanation
Indices: 83299908--83300030 Score: 122
Period size: 40 Copynumber: 3.1 Consensus size: 38
83299898 AGAAAGAGCA
*
83299908 TTAGCGGCGCTTTTTAAAAACGCCGCTAAAGATTGAGT-T
1 TTAGCGGCGCTTTTTAAAAACGCCGCTAATG-TTGA-TCT
* ** *
83299947 TTAGCGGCGCTTTTTTAAAAACGCCTCTATATGTACACCT
1 TTAGCGGCGC-TTTTTAAAAACGCCGCTA-ATGTTGATCT
* *
83299987 TTAGAGGCGCATTTTAGAAAACGCCGCTAATGCTTGATCT
1 TTAGCGGCGCTTTTTA-AAAACGCCGCTAATG-TTGATCT
83300027 TTAG
1 TTAG
83300031 TGGCATTTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
39 18 0.26
40 48 0.71
41 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (38 bp):
TTAGCGGCGCTTTTTAAAAACGCCGCTAATGTTGATCT
Found at i:83300444 original size:28 final size:28
Alignment explanation
Indices: 83300395--83300466 Score: 67
Period size: 28 Copynumber: 2.6 Consensus size: 28
83300385 TATGGATTAT
* * *
83300395 GGGTTTAGGGATTATGGTTTAATGGTT-G
1 GGGTTTAAGGATTA-GGTTTAAGGGTTAA
*
83300423 GGGTTTAAGGTTTAGGTGTTAAGGGTTAA
1 GGGTTTAAGGATTAGGT-TTAAGGGTTAA
*
83300452 GGG-TTAAGGGTTAGG
1 GGGTTTAAGGATTAGG
83300467 GGTTTAGGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 3 0.08
28 31 0.84
29 3 0.08
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.38
Consensus pattern (28 bp):
GGGTTTAAGGATTAGGTTTAAGGGTTAA
Found at i:83300461 original size:7 final size:7
Alignment explanation
Indices: 83300427--83300477 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
83300417 TGGTTGGGGT
83300427 TTAA-GG
1 TTAAGGG
*
83300433 TTTAGGTG
1 TTAAGG-G
83300441 TTAAGGG
1 TTAAGGG
83300448 TTAAGGG
1 TTAAGGG
83300455 TTAAGGG
1 TTAAGGG
*
83300462 TTAGGGG
1 TTAAGGG
*
83300469 TTTAGGG
1 TTAAGGG
83300476 TT
1 TT
83300478 CAAGATTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
6 3 0.08
7 29 0.76
8 6 0.16
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (7 bp):
TTAAGGG
Found at i:83300469 original size:14 final size:14
Alignment explanation
Indices: 83300413--83300477 Score: 69
Period size: 14 Copynumber: 4.6 Consensus size: 14
83300403 GGATTATGGT
*
83300413 TTAATGGTT-GGGG
1 TTAAGGGTTAGGGG
* *
83300426 TTTAAGGTTTAGGTG
1 -TTAAGGGTTAGGGG
*
83300441 TTAAGGGTTAAGGG
1 TTAAGGGTTAGGGG
83300455 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
*
83300469 TTTAGGGTT
1 TTAAGGGTT
83300478 CAAGATTTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
14 39 0.93
15 3 0.07
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.38
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:83300727 original size:22 final size:21
Alignment explanation
Indices: 83300680--83300755 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 21
83300670 GAGTTACTAT
* * *
83300680 TTTAAGGTTTATGGATTATGA
1 TTTATGGTTTAGGGATTATGG
*
83300701 ATTATGGGTTTAGGGATTATGG
1 TTTAT-GGTTTAGGGATTATGG
*
83300723 TTTATGGTTTAAGGG-TTAGGG
1 TTTATGGTTT-AGGGATTATGG
*
83300744 TTTAAGGTTTAG
1 TTTATGGTTTAG
83300756 AAGTTGGGGG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
20 2 0.04
21 22 0.48
22 22 0.48
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.45
Consensus pattern (21 bp):
TTTATGGTTTAGGGATTATGG
Found at i:83300730 original size:7 final size:7
Alignment explanation
Indices: 83300680--83300754 Score: 51
Period size: 7 Copynumber: 10.6 Consensus size: 7
83300670 GAGTTACTAT
*
83300680 TTTAAGG
1 TTTATGG
83300687 TTTATGG
1 TTTATGG
* *
83300694 ATTATGA
1 TTTATGG
*
83300701 ATTATGGG
1 TTTAT-GG
*
83300709 TTTAGGG
1 TTTATGG
*
83300716 ATTATGG
1 TTTATGG
83300723 TTTATGG
1 TTTATGG
*
83300730 TTTAAGG
1 TTTATGG
* *
83300737 GTTAGGG
1 TTTATGG
*
83300744 TTTAAGG
1 TTTATGG
83300751 TTTA
1 TTTA
83300755 GAAGTTGGGG
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 49 0.92
8 4 0.08
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (7 bp):
TTTATGG
Found at i:83300806 original size:14 final size:14
Alignment explanation
Indices: 83300787--83300829 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
83300777 GGATTATGAG
83300787 TTTAGGGTTTAAGA
1 TTTAGGGTTTAAGA
*
83300801 TTTAGGG-GTAGAGA
1 TTTAGGGTTTA-AGA
83300815 TTTAGGGTTT-AGA
1 TTTAGGGTTTAAGA
83300828 TT
1 TT
83300830 AATTAGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 7 0.28
14 17 0.68
15 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.42
Consensus pattern (14 bp):
TTTAGGGTTTAAGA
Found at i:83301267 original size:44 final size:44
Alignment explanation
Indices: 83301180--83301267 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
83301170 GTCATGCCTG
* * * * *
83301180 ACACTTAGCCATTTCCCCCAAAATCCCAAAATAGGTTTTCCCAA
1 ACACTTAGCCATTTCCACCAAAACCCCAAAACAGATTTCCCCAA
**
83301224 ACACTTAGCCATTTCCAGTAAAACCCCAAAACAGATTTCCCCAA
1 ACACTTAGCCATTTCCACCAAAACCCCAAAACAGATTTCCCCAA
83301268 TTCTCTATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.36, C:0.34, G:0.07, T:0.23
Consensus pattern (44 bp):
ACACTTAGCCATTTCCACCAAAACCCCAAAACAGATTTCCCCAA
Found at i:83301281 original size:18 final size:18
Alignment explanation
Indices: 83301258--83301301 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
83301248 CCCAAAACAG
* *
83301258 ATTTCCCC-AATTCTCTAT
1 ATTTCCCCTAA-TCCCTAA
83301276 ATTTCCCCTAATCCCTAA
1 ATTTCCCCTAATCCCTAA
83301294 ATTTCCCC
1 ATTTCCCC
83301302 CAAAATCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.23, C:0.39, G:0.00, T:0.39
Consensus pattern (18 bp):
ATTTCCCCTAATCCCTAA
Found at i:83305174 original size:14 final size:14
Alignment explanation
Indices: 83305134--83305175 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
83305124 AATTGTGTTA
*
83305134 TTAAATT-ATTATT
1 TTAAATTCATTAAT
*
83305147 TTAAATTC-TAAAT
1 TTAAATTCATTAAT
83305160 TTAAATTCATTAAT
1 TTAAATTCATTAAT
83305174 TT
1 TT
83305176 TTGTATTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 18 0.75
14 6 0.25
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATTCATTAAT
Found at i:83305243 original size:11 final size:11
Alignment explanation
Indices: 83305223--83305251 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
83305213 TTTAATTTGA
83305223 TAAT-GAATTT
1 TAATAGAATTT
83305233 TAATAGAATTT
1 TAATAGAATTT
83305244 TAATAGAA
1 TAATAGAA
83305252 AATTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (11 bp):
TAATAGAATTT
Found at i:83305432 original size:43 final size:43
Alignment explanation
Indices: 83305378--83305503 Score: 114
Period size: 43 Copynumber: 3.0 Consensus size: 43
83305368 ATTTGACGAC
*
83305378 CTTTAGCGGCGTTTATAGGAAAAGTGCCAG-TAAAGGTCATGTT
1 CTTTAGCGGCGTTTATAGGAAAAGCG-CAGCTAAAGGTCATGTT
* * * * *
83305421 CTTTAGTGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATG-A
1 CTTTAGCGGCGTTTATAGGAAAAGCGCAGCTAAAGGTCATGTT
* * * * *
83305463 CATTTAGCGGCGTTTGT-GGGAATGCGCCGCTAAAAGTCATG
1 C-TTTAGCGGCGTTTATAGGAAAAGCGCAGCTAAAGGTCATG
83305504 GGAAAAACGC
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 23 0.33
43 47 0.67
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGTTTATAGGAAAAGCGCAGCTAAAGGTCATGTT
Found at i:83307983 original size:12 final size:13
Alignment explanation
Indices: 83307947--83307984 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
83307937 AAATATTTGA
83307947 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
83307960 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
83307974 CTTG-TCTTAAT
1 CTTGTTCTTAAT
83307985 ATTCCAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:83312210 original size:27 final size:27
Alignment explanation
Indices: 83312127--83312211 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
83312117 GCTTTTGAAA
*
83312127 CTTACCATTGCCATGTCTTGACATGGT
1 CTTACCAATGCCATGTCTTGACATGGT
** * * **
83312154 CTTA-C-ATGGTA-GCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGAC--ATGGT
83312180 CTTACCAATGCCATGTCTTGACATGGT
1 CTTACCAATGCCATGTCTTGACATGGT
83312207 CTTAC
1 CTTAC
83312212 ATGGTAGCCT
Statistics
Matches: 40, Mismatches: 13, Indels: 10
0.63 0.21 0.16
Matches are distributed among these distances:
24 6 0.15
25 3 0.08
26 8 0.20
27 13 0.32
28 4 0.10
29 6 0.15
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (27 bp):
CTTACCAATGCCATGTCTTGACATGGT
Found at i:83312333 original size:55 final size:53
Alignment explanation
Indices: 83312078--83312385 Score: 342
Period size: 53 Copynumber: 5.8 Consensus size: 53
83312068 ACACGGGTAC
* * * * *
83312078 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA----TG-CTTTTGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
*
83312127 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
83312180 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
* * * *
83312233 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCC-TTGCCTTAT-G-AA
* * **
83312288 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
* * * *
83312341 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTAGCCTT
83312386 AAACCCTAAT
Statistics
Matches: 225, Mismatches: 23, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
49 35 0.16
52 2 0.01
53 102 0.45
54 13 0.06
55 71 0.32
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
Found at i:83317844 original size:27 final size:27
Alignment explanation
Indices: 83317814--83317874 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
83317804 CGACTTGTAA
*
83317814 AATTACCAAAGTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
**** *
83317841 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
83317868 AATTACC
1 AATTACC
83317875 GTTTTACCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:83317872 original size:54 final size:54
Alignment explanation
Indices: 83317798--83317927 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
83317788 ATTATTGAAA
* *
83317798 TACCCTCGACTTGTA-A-AATTACCAAAGTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGA-TT-TACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCATTT
**** * * *
83317852 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCATTT
*
83317906 TACCCTTGATTTACAGAATTAC
1 TACCCTCGATTTACAGAATTAC
83317928 TGTTTTACCC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 59 0.92
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCATTT
Found at i:83317875 original size:27 final size:27
Alignment explanation
Indices: 83317825--83317954 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
83317815 ATTACCAAAG
* *
83317825 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
83317852 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
83317879 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
83317906 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
83317933 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
83317955 TAAAATACCC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:83317933 original size:54 final size:54
Alignment explanation
Indices: 83317825--83317982 Score: 190
Period size: 54 Copynumber: 2.9 Consensus size: 54
83317815 ATTACCAAAG
* * ** *
83317825 TACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTT
* * *
83317879 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTT
* *** * *
83317933 TACCCTTGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACC
83317983 AAAATACCCT
Statistics
Matches: 88, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTT
Found at i:83317963 original size:27 final size:27
Alignment explanation
Indices: 83317933--83318265 Score: 221
Period size: 27 Copynumber: 12.3 Consensus size: 27
83317923 ATTACTGTTT
* *
83317933 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
83317960 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
*
83317987 TACCCTCGA-TTAGTAAAATTACCAAAA
1 TACCCTTGATTTA-TAAAATTACCAAAA
* * * * **
83318014 TACCCTAG-TCTGTAAAATTGCTTAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
83318040 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* *
83318067 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* * * *
83318094 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTATAAAATTACCAAAA
* *
83318121 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
83318148 TACCCCTGATTTACAAAATTA-CAGAAA
1 TACCCTTGATTTATAAAATTACCA-AAA
* *
83318175 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAT-AAAATTACCA-AAA
* * * *
83318204 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * * * * *
83318231 TTCCCTTGGTTTGTAGATTTACAAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
*
83318258 CACCCTTG
1 TACCCTTG
83318266 TAGGGTGAAA
Statistics
Matches: 250, Mismatches: 45, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
26 22 0.09
27 200 0.80
28 9 0.04
29 19 0.08
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:83317991 original size:54 final size:54
Alignment explanation
Indices: 83317933--83318265 Score: 264
Period size: 54 Copynumber: 6.1 Consensus size: 54
83317923 ATTACTGTTT
* * **
83317933 TACCCTTGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * **
83317987 TACCCTCGA-TTAGTAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTTAAA
1 TACCCTTGATTTA-CAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* ** *
83318040 TACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* *** * *
83318094 TACCAC-TGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAA
1 TACC-CTTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
83318148 TACCCCTGATTTACAAAATTA-CAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAATACCCTT-AGTTTGT-AAAATTACCA-AAA
* * * * * * * *
83318204 TACCATTGGTTTACAAAATTACTAAAATTCCCTTGGTTTGTAGATTTACAAAAA
1 TACCCTTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
83318258 CACCCTTG
1 TACCCTTG
83318266 TAGGGTGAAA
Statistics
Matches: 223, Mismatches: 43, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
52 1 0.00
53 43 0.19
54 129 0.58
55 12 0.05
56 37 0.17
57 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:83317991 original size:81 final size:81
Alignment explanation
Indices: 83317795--83317997 Score: 199
Period size: 81 Copynumber: 2.5 Consensus size: 81
83317785 CCAATTATTG
* ** * * *
83317795 AAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTTTACCCTCG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* *
83317860 ATTTACAGAATTACCG
66 ATTTACAAAATTACCA
*** * * * *** * * *
83317876 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTTG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
*
83317941 ATTTACAAAATTACTA
66 ATTTACAAAATTACCA
* *
83317957 AAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATT
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
83317998 AGTAAAATTA
Statistics
Matches: 92, Mismatches: 30, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.35
Consensus pattern (81 bp):
AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
ATTTACAAAATTACCA
Found at i:83318018 original size:81 final size:81
Alignment explanation
Indices: 83317933--83318231 Score: 252
Period size: 81 Copynumber: 3.7 Consensus size: 81
83317923 ATTACTGTTT
* *
83317933 TACCCTTGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-T
1 TACCCTTGATTTGCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCC-CGAGT
83317997 TAGTAAAATTACCAAAA
65 TAGTAAAATTACCAAAA
* * * * * * ** *
83318014 TACCCTAG-TCTGTAAAATTGCTTAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTT
1 TACCCTTGATTTGCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCGAGTT
*
83318078 TGTAAAATTACCAAAA
66 AGTAAAATTACCAAAA
* ** ** * ** *
83318094 TACCAC-TGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGAT
1 TACC-CTTGATTTGCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCC-GAG
*
83318158 TTA-CAAAATTA-CAGAAA
64 TTAGTAAAATTACCA-AAA
* * *
83318175 TACCCTTGACTTT-CTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTAAAAT
1 TACCCTTGA-TTTGC--AAAATTACTA-AAATACCCTTAGTTTACAAAATTACCAAAAT
83318232 TCCCTTGGTT
Statistics
Matches: 173, Mismatches: 35, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
79 2 0.01
80 66 0.38
81 68 0.39
82 6 0.03
83 31 0.18
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
TACCCTTGATTTGCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCGAGTT
AGTAAAATTACCAAAA
Found at i:83318040 original size:26 final size:27
Alignment explanation
Indices: 83317947--83318179 Score: 240
Period size: 27 Copynumber: 8.7 Consensus size: 27
83317937 CTTGATTTAC
* * * **
83317947 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
83317974 AAAATTACCAAAATA-CCCTCGATTAGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
*
83318001 AAAATTACCAAAATA-CCCTAGTCTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
83318027 AAAATTGCTTAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
83318054 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
83318081 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * * *
83318108 GAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
**
83318135 AAAATTACCAAAATACCCCT-GATTTAC
1 AAAATTACCAAAATACCCCTAG-TTTGT
83318162 AAAATTA-CAGAAATACCC
1 AAAATTACCA-AAATACCC
83318180 TTGACTTTCT
Statistics
Matches: 172, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.12
27 151 0.88
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:83318062 original size:80 final size:81
Alignment explanation
Indices: 83317947--83318178 Score: 265
Period size: 80 Copynumber: 2.9 Consensus size: 81
83317937 CTTGATTTAC
* **
83317947 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TTAGTAAAATTACCA
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC-CGAGTTAGTAAAATTACCA
83318011 AAATACC-CTAGTCTGT
65 AAATACCACTAGTCTGT
* * * * *
83318027 AAAATTGCTTAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCGAGTTAGTAAAATTACCAA
* *
83318092 AATACCACTGGTTTGT
66 AATACCACTAGTCTGT
* ** * * *
83318108 GAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTA-CAAAATTA-CA
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCC-GAGTTAGTAAAATTACCA
83318171 GAAATACC
65 -AAATACC
83318179 CTTGACTTTC
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
79 2 0.02
80 62 0.48
81 61 0.48
82 3 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCGAGTTAGTAAAATTACCAA
AATACCACTAGTCTGT
Found at i:83318359 original size:27 final size:27
Alignment explanation
Indices: 83318295--83318359 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
83318285 TACCCTATTA
*
83318295 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
83318322 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
83318349 GGTAAAATGAC
1 GGTAAAATGAC
83318360 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:83319395 original size:42 final size:42
Alignment explanation
Indices: 83319336--83319425 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
83319326 TAGTCTCCCC
* *
83319336 AAATGGGCTTGCGTACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
83319378 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
83319420 AAATGG
1 AAATGG
83319426 ACCTAAGGGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:83319491 original size:31 final size:31
Alignment explanation
Indices: 83319456--83319527 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
83319446 ACAGTAAAGA
83319456 CTTCGGCCCAGTGATATGATTTATGATAAGG
1 CTTCGGCCCAGTGATATGATTTATGATAAGG
*
83319487 CTTCGGCCTAGTGATATGATTTATGATAAGG
1 CTTCGGCCCAGTGATATGATTTATGATAAGG
83319518 CTTCGGCCCA
1 CTTCGGCCCA
83319528 ATAACCGTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (31 bp):
CTTCGGCCCAGTGATATGATTTATGATAAGG
Found at i:83328992 original size:26 final size:25
Alignment explanation
Indices: 83328953--83329060 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 25
83328943 TGGTACAAAT
83328953 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
* *
83328979 TAATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
83329005 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
83329031 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
83329057 TGAT
1 TGAT
83329061 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
25 4 0.05
26 69 0.92
27 2 0.03
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:83329017 original size:52 final size:52
Alignment explanation
Indices: 83328953--83329060 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
83328943 TGGTACAAAT
83328953 TGATAATAGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
* * * *
83329005 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
83329057 TGAT
1 TGAT
83329061 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
Found at i:83330708 original size:27 final size:26
Alignment explanation
Indices: 83330662--83330817 Score: 170
Period size: 27 Copynumber: 5.8 Consensus size: 26
83330652 AAGCGTCCTG
*
83330662 GTGGCTATGCCACAATTATCTGATCTA
1 GTGGCTCTGCCACAA-TATCTGATCTA
* *
83330689 GTGGCTCTGCCGCATATATCTG-TCCTG
1 GTGGCTCTGCCACA-ATATCTGAT-CTA
*
83330716 GTGGCTATGCCACAATTATCTGATCTA
1 GTGGCTCTGCCACAA-TATCTGATCTA
*
83330743 GTGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTCTGCCACA-ATATCTGATCTA
*
83330770 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTG-ATCTA
* * *
83330797 GTGACTTTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
83330818 GCAGCCTCAC
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
26 9 0.08
27 98 0.89
28 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGATCTA
Found at i:83330738 original size:54 final size:54
Alignment explanation
Indices: 83330656--83330817 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
83330646 TGGAGGAAGC
*
83330656 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCGCATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
83330710 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
* * * * * * *
83330764 GTTCTAGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTTGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTAGTGGCTCTGCCACATATATCT
83330817 G
1 G
83330818 GCAGCCTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 13 0.13
54 86 0.87
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
Found at i:83330798 original size:81 final size:80
Alignment explanation
Indices: 83330662--83330817 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 80
83330652 AAGCGTCCTG
* *
83330662 GTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCGCATATATCTGTCCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
83330727 ACAATTATCTGATCTA
66 ACAA-TATCTGATCTA
* * * *
83330743 GTGGCTCTGCCAC-ATATATCTGTTCTAGTGGCTCTGCCACA-ATATCTGTATCTGGTGACTTTG
1 GTGGCTATGCCACAAT-TATCTGATCTAGTGGCTCTGCCACATATATCTGT-CCTGGTGACTATG
*
83330806 TCACAATATCTG
64 CCACAATATCTG
83330818 GCAGCCTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
80 16 0.24
81 50 0.76
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
ACAATATCTGATCTA
Found at i:83336978 original size:26 final size:26
Alignment explanation
Indices: 83336949--83337056 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
83336939 TGGTACAAAT
*
83336949 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
83336975 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
83337001 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
83337027 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
83337053 TGAT
1 TGAT
83337057 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:83338697 original size:27 final size:27
Alignment explanation
Indices: 83338657--83338747 Score: 112
Period size: 31 Copynumber: 3.2 Consensus size: 27
83338647 AGGAAGCGTC
*
83338657 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
83338684 CTGGTGGCTCTGCCACATATATCTATCTGTT
1 CTGGTGGCTCTGCCAC--A-AT-TATCTGAT
83338715 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
83338742 CTGGTG
1 CTGGTG
83338748 ACTTTTATCA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
26 6 0.11
27 22 0.39
28 1 0.02
29 2 0.04
30 2 0.04
31 23 0.41
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:83338718 original size:31 final size:30
Alignment explanation
Indices: 83338657--83338737 Score: 114
Period size: 31 Copynumber: 2.8 Consensus size: 30
83338647 AGGAAGCGTC
*
83338657 CTGGTGGCTATGCCAC-A-AT-TATCTGAT
1 CTGGTGGCTCTGCCACAATATCTATCTGAT
*
83338684 CTGGTGGCTCTGCCACATATATCTATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTATCTGAT
83338715 CTGGTGGCTCTGCCACAATATCT
1 CTGGTGGCTCTGCCACAATATCT
83338738 GTATCTGGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
27 15 0.31
29 1 0.02
30 8 0.17
31 24 0.50
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.35
Consensus pattern (30 bp):
CTGGTGGCTCTGCCACAATATCTATCTGAT
Found at i:83339244 original size:40 final size:39
Alignment explanation
Indices: 83339189--83339267 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 39
83339179 TTGGCCACTT
83339189 GTTTTATTTTATTAGTATTTGCTTTTGTCATCAAATACCA
1 GTTTTATTTTATTAGTATTTGCTTTTGTCAT-AAATACCA
*
83339229 GTTTTATTTTATTAGTATTTTCTTTTGTCATAAATACCA
1 GTTTTATTTTATTAGTATTTGCTTTTGTCATAAATACCA
83339268 AACCATACCA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 8 0.21
40 30 0.79
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.54
Consensus pattern (39 bp):
GTTTTATTTTATTAGTATTTGCTTTTGTCATAAATACCA
Found at i:83340647 original size:15 final size:15
Alignment explanation
Indices: 83340612--83340670 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
83340602 CAAAGATAAC
* *
83340612 AAGAAAACCAAG-CA
1 AAGAAATCCAAGATA
83340626 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
* *
83340641 GAGAAATCCAGGATA
1 AAGAAATCCAAGATA
*
83340656 AAGAAACCCAAGATA
1 AAGAAATCCAAGATA
83340671 CGATACTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
14 11 0.30
15 26 0.70
ACGTcount: A:0.58, C:0.17, G:0.17, T:0.08
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:83351822 original size:40 final size:39
Alignment explanation
Indices: 83351778--83352002 Score: 254
Period size: 40 Copynumber: 5.7 Consensus size: 39
83351768 GCCACTGGCT
* *
83351778 CAAATACCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
83351818 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
83351857 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
83351897 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * * ** * *
83351937 CGAATGACTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
83351977 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
83352003 TATCATCCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 39 0.24
40 123 0.76
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:83351876 original size:79 final size:78
Alignment explanation
Indices: 83351778--83352002 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
83351768 GCCACTGGCT
*
83351778 CAAATACCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
83351843 TATAATAACTCACA
65 TATAATAACTCACA
* * *
83351857 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCT-CACAAACGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACT-TGCACAAATGCCTTCGGGACTTAGCCCG
* * *
83351921 GATATAGTAGCTCGCA
64 G-TATAATAACTCACA
* * * ** * *
83351937 CGAATGACTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTTGCACAAATGCCT-TCGGGACTTAGCCCG
83352001 GT
64 GT
83352003 TATCATCCGA
Statistics
Matches: 123, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
79 62 0.50
80 61 0.50
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCACA
Found at i:83358508 original size:1 final size:1
Alignment explanation
Indices: 83358502--83358866 Score: 730
Period size: 1 Copynumber: 365.0 Consensus size: 1
83358492 ATTGTAACAC
83358502 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83358567 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83358632 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83358697 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83358762 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83358827 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83358867 CAAATCATTC
Statistics
Matches: 364, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 364 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:83359003 original size:38 final size:38
Alignment explanation
Indices: 83358914--83359122 Score: 182
Period size: 37 Copynumber: 5.6 Consensus size: 38
83358904 AATCCACACT
*
83358914 CAAATCCTTCGGGACTATAGCCC-GTATAGTAACT-GCA
1 CAAATCCTTCGGGACT-TAGCCCGGTATAATAACTCGCA
83358951 CAAATCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
* *
83358989 CAAATGCCTT-GGGACTTAGCCCGGAATAATAGCTC-CA
1 CAAAT-CCTTCGGGACTTAGCCCGGTATAATAACTCGCA
* * *
83359026 CAAACGCCTTC-GGAC-TAGCCCGGATATAGTAGCTCGCA
1 CAAA-TCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
* * * ** * *
83359064 CGAATCCTTCGAGAC-T-GCCCGGAATTAACCACTAGCT
1 CAAATCCTTCGGGACTTAGCCCGGTA-TAATAACTCGCA
*
83359101 CAAATGCTCTCGGGACTTAGCC
1 CAAATCCT-TCGGGACTTAGCC
83359123 GTTATATCCG
Statistics
Matches: 141, Mismatches: 19, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
36 15 0.11
37 72 0.51
38 46 0.33
39 5 0.04
40 3 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (38 bp):
CAAATCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
Found at i:83359028 original size:75 final size:75
Alignment explanation
Indices: 83358914--83359088 Score: 191
Period size: 75 Copynumber: 2.4 Consensus size: 75
83358904 AATCCACACT
* * * *
83358914 CAAATCCTTCGGGACTATAGCCC-GTATAGTAACTGCACAAA-TCCTTCGGGACTTAGCCCGG-T
1 CAAATCCTTCGGGACT-TAGCCCGGAATAATAACTCCACAAACGCCTTC-GGAC-TAGCCCGGAT
83358976 ATAATAACTCGCA
63 ATAATAACTCGCA
*
83358989 CAAATGCCTT-GGGACTTAGCCCGGAATAATAGCTCCACAAACGCCTTCGGACTAGCCCGGATAT
1 CAAAT-CCTTCGGGACTTAGCCCGGAATAATAACTCCACAAACGCCTTCGGACTAGCCCGGATAT
* *
83359053 AGTAGCTCGCA
65 AATAACTCGCA
* *
83359064 CGAATCCTTCGAGAC-T-GCCCGGAAT
1 CAAATCCTTCGGGACTTAGCCCGGAAT
83359089 TAACCACTAG
Statistics
Matches: 86, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
73 9 0.10
74 19 0.22
75 49 0.57
76 9 0.10
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (75 bp):
CAAATCCTTCGGGACTTAGCCCGGAATAATAACTCCACAAACGCCTTCGGACTAGCCCGGATATA
ATAACTCGCA
Found at i:83374573 original size:40 final size:40
Alignment explanation
Indices: 83374529--83374716 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
83374519 GCTACTTGCT
83374529 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
83374569 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
83374609 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
83374649 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
83374688 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83374717 CATCCGAATA
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 103 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83382610 original size:40 final size:40
Alignment explanation
Indices: 83382566--83382753 Score: 265
Period size: 40 Copynumber: 4.7 Consensus size: 40
83382556 GCTACTTGCT
* *
83382566 CAAATGCCTTCAGGACTTAGCCCAGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
83382606 CAAATGCCTTCGGGAATTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
83382646 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
83382686 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACT-AGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCA-CA
83382725 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83382754 CATCCAATAT
Statistics
Matches: 134, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.25
40 99 0.74
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:83382748 original size:79 final size:80
Alignment explanation
Indices: 83382533--83382749 Score: 282
Period size: 80 Copynumber: 2.7 Consensus size: 80
83382523 AAACCAAGTA
* * * * *
83382533 CCTTC-GGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCAGGACTTAGCCCAGTTAT
1 CCTTCGGGAA-TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
83382595 AGTAACTCACACAAATG
64 AGTAACTCACACAAATG
* *
83382612 CCTTCGGGAATTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGAATTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
83382677 TAACTCGCACAAATG
66 TAACTCACACAAATG
* *
83382692 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGAATTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
83382750 TTATCATCCA
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 54 0.44
80 68 0.55
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGAATTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCACACAAATG
Found at i:83411512 original size:43 final size:42
Alignment explanation
Indices: 83411454--83411601 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 42
83411444 CAATGCCGAC
*
83411454 GTCCCAGAC-GTGGTCTTACATGTAACTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATGTAACTC-ATATCGATGCCTAT
*
83411497 GTCCCAGACAGGGTCTTACATG-AAATCATATACGATG-CTGAT
1 GTCCCAGACAGGGTCTTACATGTAACTCATAT-CGATGCCT-AT
* * *
83411539 GTCCCAGACATGGTCTTATATGTTAATCTCA-ATCGA-GCTCTGT
1 GTCCCAGACAGGGTCTTACATG-TAA-CTCATATCGATGC-CTAT
*
83411582 GTCCCAGACACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
83411602 CGATGTCTCA
Statistics
Matches: 89, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
41 6 0.07
42 31 0.35
43 42 0.47
44 7 0.08
45 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATGTAACTCATATCGATGCCTAT
Found at i:83428923 original size:33 final size:33
Alignment explanation
Indices: 83428884--83428948 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
83428874 TATCAGTGGG
*
83428884 GTATGGTTCAGATTGTATTCCATTGTAGGCTAT
1 GTATGGTTCAGATTGTATTCCATCGTAGGCTAT
*
83428917 GTATGGTTTAGATTGTATTCCATCGTAGGCTA
1 GTATGGTTCAGATTGTATTCCATCGTAGGCTA
83428949 GACTCTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.42
Consensus pattern (33 bp):
GTATGGTTCAGATTGTATTCCATCGTAGGCTAT
Found at i:83431982 original size:45 final size:45
Alignment explanation
Indices: 83431918--83432007 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
83431908 TTTTTAACAT
* *
83431918 AGTCCTTTATGTTAAACCCACTCTATGTAGTTGGTGCCTGTGGGC
1 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
83431963 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
1 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
83432008 TACTTATATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.33
Consensus pattern (45 bp):
AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
Found at i:83435386 original size:23 final size:23
Alignment explanation
Indices: 83435356--83435404 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
83435346 AAAACAGTTC
83435356 ATACTCATTGATGGTAGAAAGCA
1 ATACTCATTGATGGTAGAAAGCA
83435379 ATACTCATTGATGGTAGAAAGCA
1 ATACTCATTGATGGTAGAAAGCA
83435402 ATA
1 ATA
83435405 TCTACATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (23 bp):
ATACTCATTGATGGTAGAAAGCA
Found at i:83435542 original size:29 final size:31
Alignment explanation
Indices: 83435501--83435564 Score: 96
Period size: 29 Copynumber: 2.1 Consensus size: 31
83435491 ATAATCTATA
* *
83435501 TTTTATAATTTTTAAAGAATTAAATTA-AAT
1 TTTTATAATTTTTAAAAAATTAAAATATAAT
83435531 TTTTATAA-TTTTAAAAAATTAAAATATAAT
1 TTTTATAATTTTTAAAAAATTAAAATATAAT
83435561 TTTT
1 TTTT
83435565 TATTTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 16 0.52
30 15 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
TTTTATAATTTTTAAAAAATTAAAATATAAT
Found at i:83437534 original size:29 final size:29
Alignment explanation
Indices: 83437484--83437539 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
83437474 AGGAGAATAA
83437484 GTTGTGTTAGGATTTGAGAAAAAATTAGG
1 GTTGTGTTAGGATTTGAGAAAAAATTAGG
*
83437513 GTTGTGTTTAGGGTTTGA-AAAAAATTA
1 GTTGTG-TTAGGATTTGAGAAAAAATTA
83437540 ATTAAGAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.38
Consensus pattern (29 bp):
GTTGTGTTAGGATTTGAGAAAAAATTAGG
Found at i:83437917 original size:22 final size:20
Alignment explanation
Indices: 83437889--83437928 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
83437879 TGACATGTTA
83437889 TTTTTATTATTTTAATATAAAT
1 TTTTTATT-TTTT-ATATAAAT
83437911 TTTTTATTTTTTATATAA
1 TTTTTATTTTTTATATAA
83437929 GTAAAAGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 4 0.22
22 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTATTTTTTATATAAAT
Found at i:83440571 original size:49 final size:49
Alignment explanation
Indices: 83440481--83440655 Score: 160
Period size: 49 Copynumber: 3.6 Consensus size: 49
83440471 CTTATTGTGT
*
83440481 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATG-AGA
1 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGA-GCAAA
* * * * *
83440530 GTCAGTGTAACACCTATTTGGGACATGGCATTGGC-CTCGATATAGCAAA
1 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACAC-CGATAGAGCAAA
* * * *** * *
83440579 GTCAGTGTAAGACATGTCTGGGACATGGCATCAACTTTGAT-GTGC-TA
1 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGAGCAAA
*
83440626 GCCAGTGTAAGACCATGTTTGGGACATGGC
1 GTCAGTGTAAGACC-TGTTTGGGACATGGC
83440656 GTTGGTATTT
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
47 13 0.13
48 18 0.18
49 70 0.69
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGAGCAAA
Found at i:83442463 original size:48 final size:48
Alignment explanation
Indices: 83442411--83442982 Score: 455
Period size: 48 Copynumber: 11.9 Consensus size: 48
83442401 TGGACTATAG
* *
83442411 CGATATAAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * *
83442459 CGATAT--GTGTCAATGTAAGACAATGTCTGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* *
83442505 CGATAT--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * *
83442551 CGATAT--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGTACC-
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-GCCT
* * * * * * *
83442598 GGTTTATGAGAGTCAGTGTAAGATCATGTTTGGAACATGGCATCGGCAT
1 CG-ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * * *
83442647 TGTTATGTGAACCAATATAAGACCATGTCTGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * *
83442695 CAATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACAT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * * *
83442743 TGTTAT-ATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACACT
1 CGATATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CT
* * **
83442792 -GATGTATGAGAGCCAGTGTAAAACCATGTCCGGGACATGGCATCAACCT
1 CGA--TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * * * *
83442841 CAATATGCGATCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * * *
83442889 TGTTAT-ATGTGTCAGTGTAAGACCATGTCTAGGG-CATGGCATCGACAT
1 CGATATGA-GAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGGCCT
* * ** *
83442937 TGATGTATGAGAGCCAGTGGAAGACCATGTCCAGAACATGGCATCG
1 CGA--TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
83442983 ACATTTTACC
Statistics
Matches: 424, Mismatches: 82, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
46 120 0.28
47 3 0.01
48 193 0.46
49 8 0.02
50 98 0.23
51 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
Found at i:83442842 original size:146 final size:145
Alignment explanation
Indices: 83442413--83442982 Score: 599
Period size: 146 Copynumber: 4.0 Consensus size: 145
83442403 GACTATAGCG
* * * * * *
83442413 ATATAAGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCTCG--ATATGTGTCAATGT
1 ATATGAGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGACATTGTTATATGTGTCAGTGT
* * * * * *
83442475 AAGACAATGTCTGGGACATGGCATCGGC-CTCGA-TAT--GTGTCAGTGTAAGACCATGTCTGGG
65 AAGACCATGTCTAGGACATGGCATCGACACT-GATTATGAGAGCCAGTGTAAGACCATGTCCGGG
*
83442536 ACATGGCATCGGCCTCG
129 ACATGGCATCGGCCTCA
* * * * ** *
83442553 ATAT--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGTAC-CGGTT-TATGAGAGTCAG
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-G-ACATTGTTATAT--GTGTCAG
* * * * * * * * *
83442614 TGTAAGATCATGT-TTGGAACATGGCATCGGCATTG-TTATGTGAACCAATATAAGACCATGTCT
62 TGTAAGACCATGTCTAGG-ACATGGCATCGACACTGATTATGAGAGCCAGTGTAAGACCATGTCC
83442677 GGGACATGGCATCGGCCTCA
126 GGGACATGGCATCGGCCTCA
83442697 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
*
83442762 AGACCATGTCTAGGACATGGCATCGACACTGATGTATGAGAGCCAGTGTAAAACCATGTCCGGGA
66 AGACCATGTCTAGGACATGGCATCGACACTGAT-TATGAGAGCCAGTGTAAGACCATGTCCGGGA
**
83442827 CATGGCATCAACCTCA
130 CATGGCATCGGCCTCA
* * * *
83442843 ATATGCGATCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGTGTCAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
* * * * *
83442908 AGACCATGTCTAGGGCATGGCATCGACATTGATGTATGAGAGCCAGTGGAAGACCATGTCCAGAA
66 AGACCATGTCTAGGACATGGCATCGACACTGAT-TATGAGAGCCAGTGTAAGACCATGTCCGGGA
83442973 CATGGCATCG
130 CATGGCATCG
83442983 ACATTTTACC
Statistics
Matches: 362, Mismatches: 49, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
137 2 0.01
138 28 0.08
139 2 0.01
140 8 0.02
141 3 0.01
142 33 0.09
143 1 0.00
144 75 0.21
145 8 0.02
146 202 0.56
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (145 bp):
ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
AGACCATGTCTAGGACATGGCATCGACACTGATTATGAGAGCCAGTGTAAGACCATGTCCGGGAC
ATGGCATCGGCCTCA
Done.