Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 251 of 344
Found at i:83443550 original size:21 final size:19
Alignment explanation
Indices: 83443518--83443556 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
83443508 CCCTTGTCTT
*
83443518 AAATTTAGAAAATCATTAA
1 AAATTTAGAAAATAATTAA
83443537 AAATTGTATGAAAATAATTA
1 AAATT-TA-GAAAATAATTA
83443557 TAGGTTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (19 bp):
AAATTTAGAAAATAATTAA
Found at i:83446272 original size:46 final size:47
Alignment explanation
Indices: 83446048--83446300 Score: 323
Period size: 48 Copynumber: 5.3 Consensus size: 47
83446038 TGTATTTATT
* **
83446048 TAATTAGATTA-ATTGCAACATTAAAACTTGGAACAAACTTTGTGGTCA
1 TAATTAGA-TACATTACAACATTAAAACTTGGAACAAACTTTGTAAT-A
* *
83446096 TAAATTAGAAACATTACAACATTAAAACTTGGAACAAAATTTGTAATA
1 T-AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
*
83446144 TAAATTAAATACATTACAACATTAAAACTTGGAACAAA-TTTCGTAATA
1 T-AATTAGATACATTACAACATTAAAACTTGGAACAAACTTT-GTAATA
*
83446192 TAATTTAGGTACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
1 TAA-TTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
** *
83446240 T-ATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATT
1 TAATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
*
83446286 TAAGTTAGGTACATT
1 TAA-TTAGATACATT
83446301 GGATTACATA
Statistics
Matches: 184, Mismatches: 14, Indels: 14
0.87 0.07 0.07
Matches are distributed among these distances:
46 41 0.22
47 7 0.04
48 95 0.52
49 41 0.22
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (47 bp):
TAATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
Found at i:83447683 original size:43 final size:43
Alignment explanation
Indices: 83447589--83447743 Score: 125
Period size: 43 Copynumber: 3.6 Consensus size: 43
83447579 TGAGTTGTGC
* ** * *
83447589 TTACATGTAAGACCATGTTTGGGACATTGGCATTGTTTTGAGA
1 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATTGAGA
83447632 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATT-ATGA
1 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATTGA-GA
** * * * * * *
83447675 TTTTGTGTAAGACCCTGTCTGGAACAGTGACATCG-ATATGTGA
1 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTAT-TGAGA
* * * *
83447718 TAACATGTAAGACCATATCTGGGACA
1 TTACGTGTAAGACCATGTCAGGGACA
83447744 CAACATTGTA
Statistics
Matches: 89, Mismatches: 20, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
42 3 0.03
43 86 0.97
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATTGAGA
Found at i:83466672 original size:55 final size:54
Alignment explanation
Indices: 83466577--83466726 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
83466567 CTACTTTGTT
* ** * *
83466577 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
83466631 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
83466686 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
83466727 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:83466689 original size:27 final size:27
Alignment explanation
Indices: 83466549--83466726 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
83466539 TAAATTGTAC
83466549 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
83466576 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
83466602 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
83466630 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
83466658 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
83466685 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
83466712 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83466727 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:83466690 original size:82 final size:81
Alignment explanation
Indices: 83466550--83466705 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
83466540 AAATTGTACA
* * * *
83466550 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
83466615 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
83466631 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
83466694 TGTGCGAGTTGA
63 TGTGCGAATTGA
83466706 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:83488632 original size:27 final size:26
Alignment explanation
Indices: 83488588--83488639 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
83488578 CTCGCTACAA
*
83488588 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
83488615 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
83488640 GCAGCCACGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:83496497 original size:30 final size:30
Alignment explanation
Indices: 83496461--83496522 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
83496451 CGCACACATA
83496461 TATCAGAATCACAAATCGATGCCATGGTCT
1 TATCAGAATCACAAATCGATGCCATGGTCT
83496491 TATCAGAATCACAAATCGATGCCATGGTCT
1 TATCAGAATCACAAATCGATGCCATGGTCT
83496521 TA
1 TA
83496523 CTCATACAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (30 bp):
TATCAGAATCACAAATCGATGCCATGGTCT
Found at i:83499045 original size:43 final size:43
Alignment explanation
Indices: 83498969--83499119 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
83498959 GGTTATCGAG
** * *
83498969 TTATGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTA
1 TTATGATTACATGTAAGACCATGTCAGGAACATTGGCATCGTA
* *
83499012 TTGA-GATTACGTGTAAGACTATGTCAGGAACATTGGCATCGTA
1 TT-ATGATTACATGTAAGACCATGTCAGGAACATTGGCATCGTA
* * * *
83499055 TTATGATTTCATGTAAGACCCTGTCTAGG-ACAGTGGCATC-AA
1 TTATGATTACATGTAAGACCATGTC-AGGAACATTGGCATCGTA
* *
83499097 TATGTGATAACATGTAAGACCAT
1 T-TATGATTACATGTAAGACCAT
83499120 ATCTGGGATA
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 3 0.03
43 81 0.92
44 4 0.05
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
TTATGATTACATGTAAGACCATGTCAGGAACATTGGCATCGTA
Found at i:83503206 original size:34 final size:34
Alignment explanation
Indices: 83503163--83503241 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 34
83503153 CAGTGACGTC
* *
83503163 CAGTATTAGT-TAGGGCCATAGCCCATTACAGTAT
1 CAGTATTAGTGT-GGGCCATAGCCCAATACAGTAA
*
83503197 CAGTATTAGTGTGGGCCTTAGCCCAATACAGTAA
1 CAGTATTAGTGTGGGCCATAGCCCAATACAGTAA
*
83503231 CAGTAGTAGTG
1 CAGTATTAGTG
83503242 ATGCAATCAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (34 bp):
CAGTATTAGTGTGGGCCATAGCCCAATACAGTAA
Found at i:83508906 original size:47 final size:47
Alignment explanation
Indices: 83508855--83509171 Score: 503
Period size: 47 Copynumber: 6.7 Consensus size: 47
83508845 TTAGGATTCT
* * *
83508855 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
83508902 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
83508949 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
83508996 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
83509043 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
83509090 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCG
* * *
83509137 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
83509172 TTCCGAAGGG
Statistics
Matches: 254, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
46 6 0.02
47 246 0.97
48 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:83509346 original size:37 final size:37
Alignment explanation
Indices: 83509290--83509368 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
83509280 CCGAGCTCTA
* * * *
83509290 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
83509327 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
83509364 AAGAC
1 AAGAC
83509369 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:83510827 original size:40 final size:40
Alignment explanation
Indices: 83510584--83510815 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
83510574 GAGAATTGAG
83510584 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
83510624 AGCGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
83510664 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
83510704 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
83510744 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
83510784 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
83510816 ATCATGCTGG
Statistics
Matches: 165, Mismatches: 27, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 165 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:83514671 original size:47 final size:47
Alignment explanation
Indices: 83514641--83515030 Score: 672
Period size: 47 Copynumber: 8.3 Consensus size: 47
83514631 GTGAACATGC
*
83514641 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
83514688 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
83514735 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
83514782 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
83514829 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
83514876 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
83514923 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
83514970 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
83515017 ATAAATGTGATAAG
1 ATATATGTGATAAG
83515031 TCCCGAAGGG
Statistics
Matches: 328, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 328 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:83515205 original size:37 final size:36
Alignment explanation
Indices: 83515149--83515226 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
83515139 CCGAGCTCTA
* * *
83515149 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGT-CGGGT
*
83515186 AAGACCCGATAACTTCGTGTGGAGATTATGTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCGGGT
83515222 AAGAC
1 AAGAC
83515227 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 10 0.27
37 27 0.73
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (36 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCGGGT
Found at i:83518162 original size:29 final size:29
Alignment explanation
Indices: 83518128--83518185 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
83518118 CGCTAAATAA
83518128 ACTATATAATACTAAAAAAATAATTTATT
1 ACTATATAATACTAAAAAAATAATTTATT
*
83518157 ACTATATAATACTAACAAAATAATTTATT
1 ACTATATAATACTAAAAAAATAATTTATT
83518186 CTCATCATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (29 bp):
ACTATATAATACTAAAAAAATAATTTATT
Found at i:83524547 original size:22 final size:22
Alignment explanation
Indices: 83524510--83524553 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
83524500 TAGGAATTAG
83524510 GGTGTGTCGTTTTCTCT-TTTT
1 GGTGTGTCGTTTTCTCTCTTTT
*
83524531 GGTGTAGTCTTTTTCTCTCTTTT
1 GGTGT-GTCGTTTTCTCTCTTTT
83524554 CTTTTCCAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.02, C:0.16, G:0.20, T:0.61
Consensus pattern (22 bp):
GGTGTGTCGTTTTCTCTCTTTT
Found at i:83525760 original size:9 final size:10
Alignment explanation
Indices: 83525748--83525804 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
83525738 TATGTGGGAT
83525748 ATGATAT-AC
1 ATGATATGAC
*
83525757 ATGAT-TGAG
1 ATGATATGAC
83525766 ATGATATGCAC
1 ATGATATG-AC
*
83525777 ATGATATG-T
1 ATGATATGAC
83525786 ATGATATGCAC
1 ATGATATG-AC
83525797 ATGATATG
1 ATGATATG
83525805 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (10 bp):
ATGATATGAC
Found at i:83525780 original size:20 final size:20
Alignment explanation
Indices: 83525766--83525821 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
83525756 CATGATTGAG
83525766 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
83525786 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
83525806 ATGAAATGCACATGAT
1 ATGATATGCACATGAT
83525822 GAACTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:83525782 original size:11 final size:11
Alignment explanation
Indices: 83525766--83525821 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83525756 CATGATTGAG
83525766 ATGATATGCAC
1 ATGATATGCAC
*
83525777 ATGATATG--T
1 ATGATATGCAC
83525786 ATGATATGCAC
1 ATGATATGCAC
*
83525797 ATGATATG--T
1 ATGATATGCAC
*
83525806 ATGAAATGCAC
1 ATGATATGCAC
83525817 ATGAT
1 ATGAT
83525822 GAACTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:83525957 original size:52 final size:51
Alignment explanation
Indices: 83525873--83525993 Score: 190
Period size: 52 Copynumber: 2.4 Consensus size: 51
83525863 GGAAGTGCAG
*
83525873 AAGGGCTTATGCCCCAGTTTATGGAAAAGGGCTTATGCTCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTATGGAAAAGGGCTT-TGCCCCAGTTTACCGAA
* * *
83525925 AAGGGCTTATGCCCTAGTTTATTGAAATGGGCTTTGCCCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTATGGAAAAGGGCTTTGCCCCAGTTTACCGAA
83525976 AAGGGCTT-TGCCCCAGTT
1 AAGGGCTTATGCCCCAGTT
83525994 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 9 0.14
51 24 0.38
52 31 0.48
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (51 bp):
AAGGGCTTATGCCCCAGTTTATGGAAAAGGGCTTTGCCCCAGTTTACCGAA
Found at i:83525968 original size:25 final size:26
Alignment explanation
Indices: 83525873--83525993 Score: 165
Period size: 26 Copynumber: 4.7 Consensus size: 26
83525863 GGAAGTGCAG
**
83525873 AAGGGCTTATGCCCCAGTTTATGGAA
1 AAGGGCTTATGCCCCAGTTTACCGAA
*
83525899 AAGGGCTTATGCTCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTACCGAA
* **
83525925 AAGGGCTTATGCCCTAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTACCGAA
*
83525951 ATGGGCTT-TGCCCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTACCGAA
83525976 AAGGGCTT-TGCCCCAGTT
1 AAGGGCTTATGCCCCAGTT
83525994 ATTAAAAGAG
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
25 31 0.37
26 52 0.63
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (26 bp):
AAGGGCTTATGCCCCAGTTTACCGAA
Found at i:83528509 original size:15 final size:15
Alignment explanation
Indices: 83528489--83528553 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
83528479 ACTATGCTAA
83528489 AAATAATAAGAAATG
1 AAATAATAAGAAATG
*
83528504 AAATAA-AATAAATG
1 AAATAATAAGAAATG
* *
83528518 AAA-ATTAAATAAATG
1 AAATAAT-AAGAAATG
* *
83528533 AAA-AATGAGAAATC
1 AAATAATAAGAAATG
83528547 AAATAAT
1 AAATAAT
83528554 CAAACATGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
13 1 0.02
14 18 0.44
15 22 0.54
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.22
Consensus pattern (15 bp):
AAATAATAAGAAATG
Found at i:83537918 original size:20 final size:20
Alignment explanation
Indices: 83537893--83537934 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
83537883 TTTGATATAC
83537893 GTTTGGTTCAAACTATCGGT
1 GTTTGGTTCAAACTATCGGT
*
83537913 GTTTGGTTCAAACTATCTGT
1 GTTTGGTTCAAACTATCGGT
83537933 GT
1 GT
83537935 GAACAATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.24, T:0.43
Consensus pattern (20 bp):
GTTTGGTTCAAACTATCGGT
Found at i:83548959 original size:14 final size:14
Alignment explanation
Indices: 83548936--83548976 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
83548926 TGTTAGAGGT
83548936 AAAATAAAAAATAAA
1 AAAAT-AAAAATAAA
83548951 AAAATAAAAATAAA
1 AAAATAAAAATAAA
* *
83548965 GAAATCAAAATA
1 AAAATAAAAATA
83548977 CGTTAGTGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.15
Consensus pattern (14 bp):
AAAATAAAAATAAA
Found at i:83552073 original size:13 final size:12
Alignment explanation
Indices: 83552054--83552085 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
83552044 GGTTGTTTAT
83552054 TAACTAATTAAC
1 TAACTAATTAAC
83552066 TAAACTAATTAAC
1 T-AACTAATTAAC
83552079 TAACTAA
1 TAACTAA
83552086 ACTAAAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (12 bp):
TAACTAATTAAC
Found at i:83560361 original size:42 final size:42
Alignment explanation
Indices: 83560309--83560422 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
83560299 GGGTTACTGA
**
83560309 ATTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAG
1 ATTACGTGTAAGACCATATCTGGGATATGGCATCGATACAAG
** * * *
83560351 ATTTTGTGTAAGACCATAGCTAGGCTATTGGCATCGATACAAG
1 ATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATACAAG
*
83560394 ATTACATGTAAGACCATATCTGGGATATG
1 ATTACGTGTAAGACCATATCTGGGATATG
83560423 ATATTGGTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
ATTACGTGTAAGACCATATCTGGGATATGGCATCGATACAAG
Found at i:83561428 original size:31 final size:31
Alignment explanation
Indices: 83561384--83561469 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
83561374 TCAATCTCAG
*
83561384 CATAT-ACTAGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
83561414 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
83561445 CATATCACTGGGTCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
83561470 TATAACAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:83561745 original size:24 final size:25
Alignment explanation
Indices: 83561688--83561756 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 25
83561678 TCTTTTAATT
*
83561688 ACTGGGGCAAAATCCCTTTTCGGTAA
1 ACTGGGGC-AAAGCCCTTTTCGGTAA
*
83561714 ACTAGGGCAAAGCCCTTTTCGGT-A
1 ACTGGGGCAAAGCCCTTTTCGGTAA
*
83561738 ACTGGGGCATAGCCCTTTT
1 ACTGGGGCAAAGCCCTTTT
83561757 GCACTTCCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 18 0.46
25 14 0.36
26 7 0.18
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (25 bp):
ACTGGGGCAAAGCCCTTTTCGGTAA
Found at i:83561908 original size:24 final size:24
Alignment explanation
Indices: 83561866--83561911 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
83561856 ATAATTAAAC
* * *
83561866 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGAAAAATAGTCATTTTA
83561890 CCTAGGGGAAAAATAGTCATTT
1 CCTAGGGGAAAAATAGTCATTT
83561912 CCATACTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (24 bp):
CCTAGGGGAAAAATAGTCATTTTA
Found at i:83565407 original size:38 final size:38
Alignment explanation
Indices: 83565365--83565440 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
83565355 TACGAGTGAG
83565365 AATTTGTGAGATTGAGCCAGTATCCACGAGAATGTGTC
1 AATTTGTGAGATTGAGCCAGTATCCACGAGAATGTGTC
* *
83565403 AATTTGTGAGATTGAGCCAGTATCTATGAGAATGTGTC
1 AATTTGTGAGATTGAGCCAGTATCCACGAGAATGTGTC
83565441 TCGACCGAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (38 bp):
AATTTGTGAGATTGAGCCAGTATCCACGAGAATGTGTC
Found at i:83571640 original size:49 final size:48
Alignment explanation
Indices: 83571587--83571917 Score: 331
Period size: 49 Copynumber: 6.7 Consensus size: 48
83571577 CTGGTACGCA
*
83571587 TAGTAGCCTGCACTTAGTACTACACATGAAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-GACCAATTATCCGGTACACG
* * ** * *
83571636 TAGTAGCCTACACTTAGGACTACACACAT-GACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACT--ACACATGGACC-AATTATCCGGTACACG
*
83571686 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-GACCAATTATCCGGTACACG
* * * * *
83571735 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-GACC-AATTATCCGGTACACG
* * * * ** * * *
83571785 TAGTAGCCTGCAGTTAGTATTACATACGTGATTGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATG-GA-CCAA-TTATCCGGTACACG
*
83571836 TAGTAGCCTGCACTTAGTACTGCACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-GACCAATTATCCGGTACACG
*
83571885 TAGTAGCCTGCACTTAGTATTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATG-GACC
83571918 TCACAATAGA
Statistics
Matches: 230, Mismatches: 44, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
48 6 0.03
49 105 0.46
50 78 0.34
51 41 0.18
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGGACCAATTATCCGGTACACG
Found at i:83571749 original size:99 final size:99
Alignment explanation
Indices: 83571587--83571917 Score: 414
Period size: 99 Copynumber: 3.3 Consensus size: 99
83571577 CTGGTACGCA
** * *
83571587 TAGTAGCCTGCACTTAGTACTACACATGAAACCAATTATCCGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
* * *
83571652 GGACTACACACATGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAATCATCTGATACACG
* *
83571686 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
83571751 GTACTACACACGTGACCTAATCATCTGATACACG
66 GTACTACACACGTGACCTAATCATCTGATACACG
* * * * ** * *
83571785 TAGTAGCCTGCAGTTAGTATTACATACGTGATTGAAGTTA-TCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATTC-GGTACACGTAGTAGCCTGCAC
* * * * *
83571849 TTAGTACTGCACATGTGACC-AATTATCCGGTACACG
63 TTAGTACTACACACGTGACCTAATCATCTGATACACG
*
83571885 TAGTAGCCTGCACTTAGTATTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
83571918 TCACAATAGA
Statistics
Matches: 201, Mismatches: 28, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
99 117 0.58
100 45 0.22
101 39 0.19
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTAATCATCTGATACACG
Found at i:83573578 original size:42 final size:43
Alignment explanation
Indices: 83573523--83573632 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
83573513 GATTTGAGAT
* *
83573523 TTACGTGTAAGACCATGTCTGGGACA-TCAGTATC-ATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGT-AGCATCGATATTTGA
* * * *
83573565 TTTCATGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGA
* * *
83573608 TTACATGTAATACCACGTTTGGGAC
1 TTACATGTAAGACCATGTCTGGGAC
83573633 GTATCGTATT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
42 26 0.48
43 28 0.52
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGA
Found at i:83573605 original size:43 final size:43
Alignment explanation
Indices: 83573468--83573617 Score: 123
Period size: 43 Copynumber: 3.5 Consensus size: 43
83573458 ACATAAGATT
* *
83573468 TCGATATGTGATTATGA-GTAAGACCAC-GTCTAGGAC-GTTGGCA
1 TCGATATTTGATT-TCATGTAAGACC-CTGTCTAGGACAG-TGGCA
* * * * * *
83573511 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACA-TCAGTA
1 TCGATATT-TGATTT-CATGTAAGACCCTGTCTAGGACAGT-GGCA
83573555 TC-ATATTTGATTTCATGTAAGACCCTGTCTAGGACAGTGGCA
1 TCGATATTTGATTTCATGTAAGACCCTGTCTAGGACAGTGGCA
*
83573597 TCGATATTTGATTACATGTAA
1 TCGATATTTGATTTCATGTAA
83573618 TACCACGTTT
Statistics
Matches: 83, Mismatches: 15, Indels: 18
0.72 0.13 0.16
Matches are distributed among these distances:
42 26 0.31
43 35 0.42
44 22 0.27
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTTCATGTAAGACCCTGTCTAGGACAGTGGCA
Found at i:83576504 original size:56 final size:56
Alignment explanation
Indices: 83576442--83576649 Score: 258
Period size: 56 Copynumber: 3.7 Consensus size: 56
83576432 CAGACAGGGT
* * * * * *
83576442 CTTACTCGTAAACACATATCAGAATCACATATCGATACAAACGTATGAAATGTGGA
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGA
* * *
83576498 CTTACTCACACACATATATTAGAATCACATA-CTGATGCCAACGTATTAAACGTGGA
1 CTTACTCGCACACATATATCAGAATCACATATC-GATGCCAACGTATTAAATGTGGA
* * *
83576554 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTTAATGTGGT
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGA
* *
83576610 CTTACTAGCACACATATATCA-AAGTCACATATCAATGCCA
1 CTTACTCGCACACATATATCAGAA-TCACATATCGATGCCA
83576650 CATATTCTTC
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
55 3 0.02
56 127 0.97
57 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (56 bp):
CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGA
Found at i:83577634 original size:13 final size:13
Alignment explanation
Indices: 83577616--83577645 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
83577606 CTGAACTAGG
83577616 TTTTCCTTTCCTA
1 TTTTCCTTTCCTA
*
83577629 TTTTCCTTTCTTA
1 TTTTCCTTTCCTA
83577642 TTTT
1 TTTT
83577646 TGATTTCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCCTTTCCTA
Found at i:83578811 original size:64 final size:64
Alignment explanation
Indices: 83578733--83578863 Score: 244
Period size: 64 Copynumber: 2.0 Consensus size: 64
83578723 TTGAAAAGTG
* *
83578733 AATACTCATAATTAATGTGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
1 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTAATC
83578797 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTAATC
1 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTAATC
83578861 AAT
1 AAT
83578864 TATAATGGAG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.44
Consensus pattern (64 bp):
AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTAATC
Found at i:83591402 original size:28 final size:28
Alignment explanation
Indices: 83591332--83591426 Score: 111
Period size: 29 Copynumber: 3.4 Consensus size: 28
83591322 GAAAGCATGT
*
83591332 ATATGAATGTGATTTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGG-C
*
83591361 ATACGAATGTGATTTGGGCCTAATGGGC
1 ATATGAATGTGATTTGGGCCTAATGGGC
** *
83591389 ATATGAATAAGA-TTGGGCCTAGTGGGGC
1 ATATGAATGTGATTTGGGCCTAAT-GGGC
*
83591417 ATATGCATGT
1 ATATGAATGT
83591427 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
27 10 0.18
28 21 0.38
29 25 0.45
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTTGGGCCTAATGGGC
Found at i:83596348 original size:27 final size:27
Alignment explanation
Indices: 83596318--83596371 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
83596308 TGAAATGAGC
83596318 AAGTTTGTATGTAAATAATATTTCGGT
1 AAGTTTGTATGTAAATAATATTTCGGT
83596345 AAGTTTGTATGTAAATAATATTTCGGT
1 AAGTTTGTATGTAAATAATATTTCGGT
83596372 TGTTTTTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (27 bp):
AAGTTTGTATGTAAATAATATTTCGGT
Found at i:83596856 original size:50 final size:50
Alignment explanation
Indices: 83596789--83596919 Score: 138
Period size: 50 Copynumber: 2.6 Consensus size: 50
83596779 TTAACTTCGA
* ** *
83596789 TCACGTGTGTAGTACTAAGCGTAGGCTACTACGTGTATTAGATGGTTAAG
1 TCACGTGTGTAGTACTAAGCGTAGGCTACTACATGTACCAGATGGATAAG
*** * * *
83596839 TCACGTGTGTAGTACTAAGTACAAGCTACTACATGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGCGTAGGCTACTACATGTACCAGATGGATAAG
* *
83596889 TCGCATGTGTAGTACTAA-CTGTAGGCTACTA
1 TCACGTGTGTAGTACTAAGC-GTAGGCTACTA
83596920 TGCGTACCAG
Statistics
Matches: 64, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGCGTAGGCTACTACATGTACCAGATGGATAAG
Found at i:83596867 original size:141 final size:141
Alignment explanation
Indices: 83596607--83596888 Score: 375
Period size: 141 Copynumber: 2.0 Consensus size: 141
83596597 CCGCATGTGT
* * * *
83596607 AGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTTGATCATGTGTATAGTACTAAATACAG
1 AGTACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTATAGTACTAAACACAG
* * * * * ** *
83596672 GCTATTATGTGTATCAGATGGTTAAGTCACCTGTGTAATACTAGGTTCAGGCTACTATGTGTACT
66 GCTACTACGTGTATCAGATGGTTAAGTCACCTGTGTAATACTAAGTACAAGCTACTACATGTACC
83596737 AGAATGATAGG
131 AGAATGATAGG
* * * **
83596748 AGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGCGTAG
1 AGTACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTATAGTACTAAACACAG
* * *
83596813 GCTACTACGTGTATTAGATGGTTAAGTCACGTGTGTAGTACTAAGTACAAGCTACTACATGTACC
66 GCTACTACGTGTATCAGATGGTTAAGTCACCTGTGTAATACTAAGTACAAGCTACTACATGTACC
*
83596878 AGATTGATAGG
131 AGAATGATAGG
83596889 TCGCATGTGT
Statistics
Matches: 120, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
141 120 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (141 bp):
AGTACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTATAGTACTAAACACAG
GCTACTACGTGTATCAGATGGTTAAGTCACCTGTGTAATACTAAGTACAAGCTACTACATGTACC
AGAATGATAGG
Found at i:83601175 original size:13 final size:13
Alignment explanation
Indices: 83601157--83601191 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
83601147 AACACTCTAT
83601157 GATGCAAGGGAGA
1 GATGCAAGGGAGA
*
83601170 GATGCATGGGAGA
1 GATGCAAGGGAGA
*
83601183 GATACAAGG
1 GATGCAAGG
83601192 ACCTTTTGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.43, T:0.11
Consensus pattern (13 bp):
GATGCAAGGGAGA
Found at i:83611000 original size:38 final size:39
Alignment explanation
Indices: 83610925--83611006 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
83610915 ATCTCATAAT
*
83610925 ATAGTATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
1 ATAGAATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
83610964 ATAGAATTCCTTTGCTTGCTCTG-TTTTGTTATATGAAA
1 ATAGAATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
83611002 ATAGA
1 ATAGA
83611007 CTCATTAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
38 20 0.48
39 22 0.52
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (39 bp):
ATAGAATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
Found at i:83616152 original size:39 final size:39
Alignment explanation
Indices: 83615966--83616134 Score: 284
Period size: 39 Copynumber: 4.3 Consensus size: 39
83615956 ACTCAGTGAT
*
83615966 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
* * *
83616005 GAATTATATCCGAACTTAAGGTCTGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
83616044 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
*
83616083 GAATTATGTCAGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
*
83616122 GAATTACGTCCGG
1 GAATTATGTCCGG
83616135 GCTAAAGTCC
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 122 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
Found at i:83620763 original size:15 final size:16
Alignment explanation
Indices: 83620736--83620770 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
83620726 ACTATATTAC
*
83620736 AAATAATAAGAAAAGG
1 AAATAATAAGAAAAGA
83620752 AAATAA-AAGAAAAGA
1 AAATAATAAGAAAAGA
83620767 AAAT
1 AAAT
83620771 TAAATAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.11
Consensus pattern (16 bp):
AAATAATAAGAAAAGA
Found at i:83620768 original size:20 final size:20
Alignment explanation
Indices: 83620743--83620784 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
83620733 TACAAATAAT
83620743 AAGAAAAGGAAATAAAAGAA
1 AAGAAAAGGAAATAAAAGAA
** *
83620763 AAGAAAATTAAATAAATGAA
1 AAGAAAAGGAAATAAAAGAA
83620783 AA
1 AA
83620785 ATGAGAAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (20 bp):
AAGAAAAGGAAATAAAAGAA
Found at i:83623975 original size:16 final size:16
Alignment explanation
Indices: 83623935--83623977 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
83623925 AAAAATTATA
83623935 AAATAAGAA-AAAAAAG
1 AAATAA-AAGAAAAAAG
*
83623951 AAAT-TAAGAAAAAAG
1 AAATAAAAGAAAAAAG
83623966 AAATAAAAGAAA
1 AAATAAAAGAAA
83623978 CAAAAGGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (16 bp):
AAATAAAAGAAAAAAG
Found at i:83625313 original size:18 final size:17
Alignment explanation
Indices: 83625280--83625317 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
83625270 CTTGTGGTAA
83625280 TTTTGAAAACGTTTGTCT
1 TTTTGAAAACGTTTGT-T
83625298 TTTTGAAAAC-TCTTGTT
1 TTTTGAAAACGT-TTGTT
83625315 TTT
1 TTT
83625318 CCTACCTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.21, C:0.11, G:0.13, T:0.55
Consensus pattern (17 bp):
TTTTGAAAACGTTTGTT
Found at i:83626023 original size:27 final size:27
Alignment explanation
Indices: 83625977--83626031 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
83625967 ATATATCACA
*
83625977 TAGGGGCAAAACAATTATTTTATCAAT
1 TAGGGGCAAAACAATTATTTTACCAAT
*
83626004 TAGGGGCAAAA-TATTCATTTTACCAAT
1 TAGGGGCAAAACAATT-ATTTTACCAAT
83626031 T
1 T
83626032 TGAGGGTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 22 0.88
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (27 bp):
TAGGGGCAAAACAATTATTTTACCAAT
Found at i:83633856 original size:6 final size:6
Alignment explanation
Indices: 83633845--83634116 Score: 226
Period size: 6 Copynumber: 44.8 Consensus size: 6
83633835 AACCAAAATG
* *
83633845 AGAATC AGAATC AGAATC AGTAA-C AGAATT AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
83633893 AGTAA-C AGAATC AGAATC AGAATC AGAATC A-ATATT AGTAAT- AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC
* * *
83633941 AGAATT AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
* *
83633990 AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATTAC ATG-A-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAA-T-C A-GAATC
* * *
83634039 AGAATC AGAATC AGAATC AGTATT ACTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC A-GAATC AGAATC AGAATC AGAATC
83634087 AGAATTAC ATG-A-C AGAATC AGAATC AGAAT
1 AGAA-T-C A-GAATC AGAATC AGAATC AGAAT
83634117 GTGAATGCAA
Statistics
Matches: 218, Mismatches: 21, Indels: 54
0.74 0.07 0.18
Matches are distributed among these distances:
4 2 0.01
5 20 0.09
6 174 0.80
7 11 0.05
8 9 0.04
9 2 0.01
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.22
Consensus pattern (6 bp):
AGAATC
Found at i:83633860 original size:30 final size:29
Alignment explanation
Indices: 83633824--83633988 Score: 134
Period size: 30 Copynumber: 5.3 Consensus size: 29
83633814 AAGAAACATT
* * *
83633824 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
* *
83633854 ATCAGAATCAGTAACAGAATTAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
83633884 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* *
83633914 ATCAGAATCAATATTAGTAATAGAATCAGAATTAGA
1 ATCAG-----A-ATT-GTAACAGAATCAGAATCAGA
*
83633950 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
83633981 ATCAGAAT
1 ATCAGAAT
83633989 CAGAATCAGT
Statistics
Matches: 113, Mismatches: 12, Indels: 19
0.78 0.08 0.13
Matches are distributed among these distances:
29 1 0.01
30 54 0.48
31 29 0.26
36 29 0.26
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:83633994 original size:55 final size:58
Alignment explanation
Indices: 83633845--83634116 Score: 155
Period size: 61 Copynumber: 4.8 Consensus size: 58
83633835 AACCAAAATG
* * *
83633845 AGAATCAGAATCAGAATCAG--TA-ACAGAATTAGAATCAGAATCA-ATATTA-GTAAC
1 AGAATCAGAATCAGAATCAGTATACACAGAATCAGAATCAGAATCAGA-ATTACATGAC
* * * *
83633899 AGAATCAGAATCAGAATCAGAAT-CA-A-TATTAGTAAT-AGAATCAGAATTAGA--ATC
1 AGAATCAGAATCAGAATCAGTATACACAGAATCAG-AATCAGAATCAGAATTACATGA-C
* * * * * *
83633953 AGAATTAG-GTGACAGAATCAG-A-A-TCAGAATCAGAATCAGAATCAGTATTA-GTAAC
1 AGAATCAGAAT--CAGAATCAGTATACACAGAATCAGAATCAGAATCAGAATTACATGAC
* * *
83634008 AGAATCAGAATCAGAATCAGAATTACATGACAGAATCAGAATCAGAATCAGTATTAC-TAAC
1 AGAATCAGAATCAGAATCAGTA-TAC---ACAGAATCAGAATCAGAATCAGAATTACATGAC
*
83634069 AGAATCAGAATCAGAATCAGAATTACATGACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTA-TAC---ACAGAATCAGAATCAGAAT
83634117 GTGAATGCAA
Statistics
Matches: 182, Mismatches: 12, Indels: 41
0.77 0.05 0.17
Matches are distributed among these distances:
53 2 0.01
54 58 0.32
55 39 0.21
56 4 0.02
57 1 0.01
61 78 0.43
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.22
Consensus pattern (58 bp):
AGAATCAGAATCAGAATCAGTATACACAGAATCAGAATCAGAATCAGAATTACATGAC
Found at i:83634080 original size:61 final size:61
Alignment explanation
Indices: 83633977--83634116 Score: 271
Period size: 61 Copynumber: 2.3 Consensus size: 61
83633967 GAATCAGAAT
*
83633977 CAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTACATGA
1 CAGAATCAGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGA
83634038 CAGAATCAGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGA
1 CAGAATCAGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGA
83634099 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
83634117 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 78 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.21
Consensus pattern (61 bp):
CAGAATCAGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGA
Found at i:83634115 original size:73 final size:71
Alignment explanation
Indices: 83633845--83634116 Score: 315
Period size: 73 Copynumber: 4.0 Consensus size: 71
83633835 AACCAAAATG
* * * *
83633845 AGAATCAGAATCAGAATCAGTAACAGAATTAGAATCAGAATCA-ATATTA-G---TAA-CAGAAT
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGA-ATTATGACAGAATCAGAAT
83633904 CAGAATC
65 CAGAATC
* * *
83633911 AGAATCAGAATCAATATTAGTAATAGAATCAGAATTAGAATCAGAATTAGGTGACAGAATCAGAA
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTA--TGACAGAATCAGAA
83633976 TCAGAATC
64 TCAGAATC
83633984 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAA-T-T-AC---AT--G-A-C
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTATGACAGAATCAGAATC
83634039 AGAATC
66 AGAATC
*
83634045 AGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGACAGAATCAGAA
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATT--ATGACAGAATCAGAA
83634110 TCAGAAT
64 TCAGAAT
83634117 GTGAATGCAA
Statistics
Matches: 175, Mismatches: 11, Indels: 33
0.80 0.05 0.15
Matches are distributed among these distances:
61 52 0.30
62 2 0.01
63 1 0.01
65 3 0.02
66 43 0.25
67 1 0.01
68 2 0.01
69 4 0.02
71 1 0.01
72 4 0.02
73 62 0.35
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.22
Consensus pattern (71 bp):
AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTATGACAGAATCAGAATC
AGAATC
Found at i:83636580 original size:22 final size:22
Alignment explanation
Indices: 83636552--83636601 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
83636542 TATACCATAT
83636552 TTCAAACATACCTTAATAGCCA
1 TTCAAACATACCTTAATAGCCA
83636574 TTCAAACATACCTTAATAGCCA
1 TTCAAACATACCTTAATAGCCA
83636596 TTCAAA
1 TTCAAA
83636602 TATGCATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.26, G:0.04, T:0.28
Consensus pattern (22 bp):
TTCAAACATACCTTAATAGCCA
Found at i:83637738 original size:195 final size:195
Alignment explanation
Indices: 83637406--83637797 Score: 712
Period size: 195 Copynumber: 2.0 Consensus size: 195
83637396 TTATTTTTAA
83637406 AACTTCCAGACAAGCTGGAAATCTGCGTCACAGTCGCTTAAAAATTCATATCTCGAGTTCCAAAA
1 AACTTCCAGACAAGCTGGAAATCTGCGTCACAGTCGCTTAAAAATTCATATCTCGAGTTCCAAAA
*
83637471 CTCAAAGTCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATCTGATAATGTTTTT
66 CTCAAAATCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATCTGATAATGTTTTT
*
83637536 CTAGAATTTTTTGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTATTTCAAGGTTC
131 CTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTATTTCAAGGTTC
* * * *
83637601 AACTTCCAGACAAGCTGGCAATCTGTGTCATAGTCGCTTAAAAATTCATATCTCGAGTTCCGAAA
1 AACTTCCAGACAAGCTGGAAATCTGCGTCACAGTCGCTTAAAAATTCATATCTCGAGTTCCAAAA
*
83637666 CTCAAAATCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATTTGATAATGTTTTT
66 CTCAAAATCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATCTGATAATGTTTTT
*
83637731 CTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTGTTTCAAGGTTC
131 CTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTATTTCAAGGTTC
83637796 AA
1 AA
83637798 TTGTTCTGAC
Statistics
Matches: 189, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
195 189 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (195 bp):
AACTTCCAGACAAGCTGGAAATCTGCGTCACAGTCGCTTAAAAATTCATATCTCGAGTTCCAAAA
CTCAAAATCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATCTGATAATGTTTTT
CTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTATTTCAAGGTTC
Found at i:83640333 original size:40 final size:40
Alignment explanation
Indices: 83640180--83640373 Score: 232
Period size: 40 Copynumber: 4.8 Consensus size: 40
83640170 TTCGAATGAT
* * * *
83640180 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
83640221 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
83640261 TTCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
83640300 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
83640341 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83640374 AGCTATATCC
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 33 0.25
40 70 0.53
41 27 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:83640388 original size:79 final size:78
Alignment explanation
Indices: 83640182--83640399 Score: 221
Period size: 79 Copynumber: 2.7 Consensus size: 78
83640172 CGAATGATAT
* * * * *
83640182 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
83640246 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
83640263 CCGGGCTAAG-CCCGAAGGCATTGGTA-CGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATT
83640325 TGTGCGAGTTACT-ATAA
62 TGTGCGAGTTACTAAT-A
* *
83640342 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
83640400 TATGTGATTC
Statistics
Matches: 115, Mismatches: 12, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
78 3 0.03
79 59 0.51
80 43 0.37
81 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:83642826 original size:30 final size:30
Alignment explanation
Indices: 83642792--83642851 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
83642782 CTTTAATACG
* *
83642792 AACTTTGGAAAAATTATATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83642822 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
83642852 GGCTCGAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83656216 original size:30 final size:30
Alignment explanation
Indices: 83656182--83656241 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
83656172 CTTTAATACG
* *
83656182 AACTTTGGAAAAATTATATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83656212 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
83656242 GGCTCGAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83658726 original size:39 final size:40
Alignment explanation
Indices: 83658662--83658737 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 40
83658652 ATTATGTTTG
*
83658662 GCACTTAGTGTGCGTTTCGAGATAGCTTCGG-TATATATA
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATA
* *
83658701 GCACTTAGTGTGCGAATTGGA-ATAGCTTTGGCTATAT
1 GCACTTAGTGTGCG-ATTCGAGATAGCTTCGGCTATAT
83658738 GTGGCACTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 23 0.72
40 9 0.28
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATA
Found at i:83659413 original size:22 final size:23
Alignment explanation
Indices: 83659364--83659414 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
83659354 ATGGTAAATT
*
83659364 TTGGTATGATTTGTGAATGATGA
1 TTGGTATGATTTGAGAATGATGA
*
83659387 ATGGTATG-TTTGAGAA-GCATGA
1 TTGGTATGATTTGAGAATG-ATGA
83659409 TTGGTA
1 TTGGTA
83659415 GATAGAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 16 0.67
23 7 0.29
ACGTcount: A:0.27, C:0.02, G:0.31, T:0.39
Consensus pattern (23 bp):
TTGGTATGATTTGAGAATGATGA
Found at i:83663702 original size:42 final size:42
Alignment explanation
Indices: 83663621--83663763 Score: 139
Period size: 43 Copynumber: 3.3 Consensus size: 42
83663611 TCCCAAACGT
* *
83663621 GGTCTTACATGTAATCAAATATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAAC-ATCCCAGACAG
* *
83663664 GGTCTTACACGAAATCAAATACGATGCCAACGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATGCCAACATCCCAGACAG
* * * *
83663706 AGTCTTACATGTAAATCATAAGT-CAATGCCAACATCCTAGAC-G
1 GGTCTTACACG-AAATCA-AA-TACGATGCCAACATCCCAGACAG
83663749 TGGTCTTACACGAAA
1 -GGTCTTACACGAAA
83663764 ACACATATCG
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
42 25 0.30
43 30 0.36
44 27 0.33
45 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAACATCCCAGACAG
Found at i:83666989 original size:19 final size:21
Alignment explanation
Indices: 83666948--83666990 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
83666938 TTCAGTATTC
*
83666948 AAAAAATCATTATAAATAGTA
1 AAAAAATCATTATAAAGAGTA
*
83666969 AAAAAATGATTAT-AAGA-TA
1 AAAAAATCATTATAAAGAGTA
83666988 AAA
1 AAA
83666991 TTTTACGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 3 0.15
21 12 0.60
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (21 bp):
AAAAAATCATTATAAAGAGTA
Found at i:83667986 original size:141 final size:141
Alignment explanation
Indices: 83667656--83667990 Score: 438
Period size: 141 Copynumber: 2.4 Consensus size: 141
83667646 AGCTAAGGCC
* ** ** * * * *
83667656 GAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
* * * *
83667721 ATGTGAACATGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGT
66 ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
* *
83667786 GTGATAAGGCC
131 GTGATAAGACA
* * *
83667797 GAATGGCCAATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAA
1 GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
*
83667862 ATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
66 ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
83667927 GTGATAAGACA
131 GTGATAAGACA
* * * * *
83667938 GAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGGAAAGCCGAATGG
1 GAATGGCCAATGTGATGAACAT-GAACATGCACATATGTGAGAAAGCCGAATGG
83667991 TTAATGCGAA
Statistics
Matches: 172, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
141 169 0.98
142 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (141 bp):
GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
GTGATAAGACA
Found at i:83667990 original size:47 final size:47
Alignment explanation
Indices: 83667618--83667956 Score: 507
Period size: 47 Copynumber: 7.2 Consensus size: 47
83667608 TTAGAATTTT
* ** * * * *
83667618 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83667665 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83667712 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
83667759 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83667806 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83667853 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
83667900 ATGTGATAAATGTGAACATGCATATATGTGATAAGACAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83667947 ATGTGATGAA
1 ATGTGATGAA
83667957 CGTGGAAGTG
Statistics
Matches: 267, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 267 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:83668023 original size:46 final size:46
Alignment explanation
Indices: 83667970--83668060 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
83667960 GGAAGTGTAT
* * *
83667970 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
83668016 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
83668061 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:83674288 original size:39 final size:40
Alignment explanation
Indices: 83674217--83674626 Score: 677
Period size: 40 Copynumber: 10.4 Consensus size: 40
83674207 GGCTACTGAG
83674217 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
*
83674257 CCGAAGGCAATTATGC-AGTTGACATATCCGGGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
83674296 CCGAAGGCAATTATGCGAGTTGATATATCC-GGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
83674335 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
* *
83674375 CCGAAGGCAATTATGCGAG-TGATATATCCGGGTTATGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
*
83674414 CCGAA-GCAATTATGCGAGTTGACATATCC-GGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
83674452 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
*
83674492 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTATGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
* *
83674532 CCGAAGGCAATTATGCGGGATGATATATCCGGGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
* * * *
83674572 CCGAAGGCAATTATGCGAGTTCATATGTCTGGGTTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
*
83674612 CCGAAGGCAAATATG
1 CCGAAGGCAATTATG
83674627 TTTGCGGCTG
Statistics
Matches: 346, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
38 25 0.07
39 132 0.38
40 189 0.55
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
Found at i:83674317 original size:79 final size:80
Alignment explanation
Indices: 83674217--83674626 Score: 677
Period size: 79 Copynumber: 5.2 Consensus size: 80
83674207 GGCTACTGAG
*
83674217 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGC-AGTTGACA
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATA
83674281 TATCCGGGCTAAGAC
66 TATCCGGGCTAAGAC
83674296 CCGAAGGCAATTATGCGAGTTGATATATCC-GGCTAAGACCCGAAGGCAATTATGCGAGTTGATA
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATA
83674360 TATCCGGGCTAAGAC
66 TATCCGGGCTAAGAC
* * *
83674375 CCGAAGGCAATTATGCGAG-TGATATATCCGGGTTATGACCCGAA-GCAATTATGCGAGTTGACA
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATA
83674438 TATCC-GGCTAAGAC
66 TATCCGGGCTAAGAC
83674452 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATA
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATA
*
83674517 TATCCGGGCTATGAC
66 TATCCGGGCTAAGAC
* * *
83674532 CCGAAGGCAATTATGCGGGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCATA
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATA
* * *
83674597 TGTCTGGGTTAAGAC
66 TATCCGGGCTAAGAC
*
83674612 CCGAAGGCAAATATG
1 CCGAAGGCAATTATG
83674627 TTTGCGGCTG
Statistics
Matches: 310, Mismatches: 16, Indels: 9
0.93 0.05 0.03
Matches are distributed among these distances:
77 28 0.09
78 81 0.26
79 106 0.34
80 95 0.31
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATA
TATCCGGGCTAAGAC
Found at i:83683281 original size:40 final size:40
Alignment explanation
Indices: 83683222--83683654 Score: 749
Period size: 40 Copynumber: 10.8 Consensus size: 40
83683212 GAACATTGGA
* *
83683222 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
83683262 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
83683302 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
83683342 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
83683382 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
83683422 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
83683462 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
83683502 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
83683542 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
83683582 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTC
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
83683622 ATATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATG
83683655 TTTGCGGCTG
Statistics
Matches: 373, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 373 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:83687868 original size:28 final size:28
Alignment explanation
Indices: 83687800--83687874 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
83687790 TATATATATG
* *
83687800 TGGCACTTAGTGTGCGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAGATATTAAGAA
* * *
83687828 TGACATTTGGTGTGCGAGATATTAAGTAA
1 TGGCACTTAGTGTGCGAGATATTAAG-AA
*
83687857 -GGCACTTAGTGTCCGAGA
1 TGGCACTTAGTGTGCGAGA
83687875 CAATGAAGAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTAAGAA
Found at i:83691774 original size:46 final size:46
Alignment explanation
Indices: 83691707--83691884 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
83691697 TGTAACCCGC
* *
83691707 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
83691753 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * **
83691799 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
83691846 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
83691885 CTCAACCATC
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:83691824 original size:93 final size:93
Alignment explanation
Indices: 83691715--83691885 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
83691705 GCCCATAAGT
* * ***
83691715 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83691780 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
83691808 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83691873 CGAGTTCGGATGC
66 CGAGCTCGGATGC
83691886 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:83694259 original size:30 final size:30
Alignment explanation
Indices: 83694215--83694303 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
83694205 CAAAGATAAC
*
83694215 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
83694244 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
83694274 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
83694304 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:83694263 original size:15 final size:14
Alignment explanation
Indices: 83694215--83694297 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
83694205 CAAAGATAAC
*
83694215 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
83694229 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
83694244 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
83694259 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
83694274 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
83694289 AAGAAACCC
1 AAGAAACCC
83694298 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:83694303 original size:15 final size:15
Alignment explanation
Indices: 83694226--83694303 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
83694216 AGAAAACCGA
83694226 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
83694241 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
83694255 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
83694270 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
83694286 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
83694301 ATA
1 ATA
83694304 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83700165 original size:46 final size:46
Alignment explanation
Indices: 83700098--83700271 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
83700088 GTAACCCGCC
* * *
83700098 CATAAGTGAACTCGGATTCAACTCAACGAGCTTAGGCGTTCGCATA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGCATTCGCATA
*
83700144 CATAAGTGAACTCGGACTCAACTCAACGAGC-TCGG-ATGC-CTAGTTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGCATTCGC-A--TA
*** *
83700190 CATCTCTCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATC
1 CATAAGT-GAACTCGGACTCAACTCAACGAGCTTCGG-CATTCGCATA
*
83700237 CATAAGTAAACTCGGACTCAACTCAACGAG-TTCGG
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTTCGG
83700272 ATGGTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 63 0.59
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGCATTCGCATA
Found at i:83700217 original size:93 final size:93
Alignment explanation
Indices: 83700105--83700274 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
83700095 GCCCATAAGT
* * *
83700105 GAACTCGGATTCAACTCAACGAGCTTAGG-CGTTCGCATACATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTAGGACATTCGCATACATAAGTAAACTCGGACTCAACTCA
83700169 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
83700198 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTAGGACATTCGCATACATAAGTAAACTCGGACTCAACTCAA
*
83700263 CGAGTTCGGATG
66 CGAGCTCGGATG
83700275 GTCAACCATC
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTAGGACATTCGCATACATAAGTAAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:83707882 original size:23 final size:24
Alignment explanation
Indices: 83707829--83707882 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
83707819 AGCTTTATAA
* *
83707829 CGGGAAGCTCACATAGAGCCATTT
1 CGGGAAGCTCACAAAGAGCCATAT
*
83707853 CGGGAAGCTCATAAAGAGCC-TAT
1 CGGGAAGCTCACAAAGAGCCATAT
83707876 CGGGAAG
1 CGGGAAG
83707883 TTTATCCGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.31, C:0.22, G:0.30, T:0.17
Consensus pattern (24 bp):
CGGGAAGCTCACAAAGAGCCATAT
Found at i:83708066 original size:25 final size:27
Alignment explanation
Indices: 83707994--83708059 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
83707984 TGCGAGCATT
*
83707994 ATCGGGAAGCTCAGAAAGAGCCAATTTA
1 ATCGGGAAGCTCACAAAGAGCC-ATTTA
83708022 AT-GGGAAGCTCACAAAGAGCC-TTTA
1 ATCGGGAAGCTCACAAAGAGCCATTTA
*
83708047 ATCGGGATGCTCA
1 ATCGGGAAGCTCA
83708060 TAAGAGCTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 6 0.17
26 9 0.26
27 18 0.51
28 2 0.06
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
ATCGGGAAGCTCACAAAGAGCCATTTA
Found at i:83708503 original size:21 final size:20
Alignment explanation
Indices: 83708471--83708509 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
83708461 ATATAAATAA
83708471 ATTTAATATCAATTTAATCC
1 ATTTAATATCAATTTAATCC
*
83708491 ATTTCATACTCAATTTAAT
1 ATTTAATA-TCAATTTAAT
83708510 TCAATTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTTAATATCAATTTAATCC
Found at i:83711841 original size:32 final size:32
Alignment explanation
Indices: 83711801--83711884 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 32
83711791 ATAGTATCAA
* * *
83711801 TTGGGCCTAGCCCATCTCAAAATCAATACCAG
1 TTGGGCCTAGCCCATATCAAAACCAAGACCAG
* * *
83711833 TTTGGCCTAGCCCATATCAGAACCAAGATCAG
1 TTGGGCCTAGCCCATATCAAAACCAAGACCAG
*
83711865 TTGGGCCTAGCCCATTTCAA
1 TTGGGCCTAGCCCATATCAA
83711885 TTTCAAACCC
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAAAACCAAGACCAG
Found at i:83720254 original size:40 final size:40
Alignment explanation
Indices: 83720199--83720346 Score: 201
Period size: 40 Copynumber: 3.7 Consensus size: 40
83720189 ACTACATGCT
83720199 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
83720239 CAAATACCTTTGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
83720279 CAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
83720318 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83720347 CATCCAAATA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.35
40 58 0.63
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83728231 original size:39 final size:40
Alignment explanation
Indices: 83728210--83728353 Score: 229
Period size: 40 Copynumber: 3.6 Consensus size: 40
83728200 ACTACTTGCT
*
83728210 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
83728250 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
83728290 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
83728329 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
83728354 TTATCATCCA
Statistics
Matches: 97, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.35
40 62 0.64
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:83730278 original size:79 final size:82
Alignment explanation
Indices: 83730167--83730351 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
83730157 GCTACTCGTT
* * *
83730167 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
83730230 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
83730247 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
83730310 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
83730327 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83730352 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:83730351 original size:40 final size:40
Alignment explanation
Indices: 83730148--83730351 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
83730138 CGGAATTTAA
** *
83730148 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
83730188 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
83730228 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83730267 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83730307 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83730347 CCGGA
1 CCGGA
83730352 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83737719 original size:39 final size:40
Alignment explanation
Indices: 83737602--83737786 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
83737592 GCTACTCGTT
*
83737602 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
83737642 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
83737682 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * *
83737721 CAAATGCCTTC-GGATCTTAGTACGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
83737762 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83737787 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 74 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:83737747 original size:79 final size:82
Alignment explanation
Indices: 83737602--83737786 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
83737592 GCTACTCGTT
* * * *
83737602 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACACG
* *
83737666 GATTTAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* * **
83737682 CAAATGCCTTTGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTAC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACAC
* *
83737744 GGATATGGTCACTTAGCA
65 GGATATAGTAACTTAGCA
83737762 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83737787 CATCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.59
80 33 0.38
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACACG
GATATAGTAACTTAGCA
Found at i:83747213 original size:93 final size:93
Alignment explanation
Indices: 83747054--83747224 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
83747044 GCCCCTAAGT
* * * *
83747054 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACACAA
*
83747119 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * * *
83747147 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTTGGACTCAACACAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACACAA
83747212 CGAGCTCGGATGC
66 CGAGCTCGGATGC
83747225 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACACAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:83747214 original size:46 final size:46
Alignment explanation
Indices: 83747049--83747221 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
83747039 AACCCGCCCC
* * * * *
83747049 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * *
83747095 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * *
83747143 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* *
83747188 TAAGTGAACTTGGACTCAACACAACGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
83747222 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.54
47 29 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:83755645 original size:27 final size:27
Alignment explanation
Indices: 83755516--83756032 Score: 341
Period size: 27 Copynumber: 19.6 Consensus size: 27
83755506 TACCCTACAG
* * * *
83755516 GGGTATGTCGGTCATTTTAC-ACTATAA
1 GGGTATTTCGGTAATTTTACAAAT-TGA
* * **
83755543 GGGTATTTCGGTAATTTTA-TACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-TGA
* *
83755570 GGGTATTTCGATAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAATTGA
* *
83755597 GGGTGTTTCGGTAATTTTACAAATTAA
1 GGGTATTTCGGTAATTTTACAAATTGA
*
83755624 GGGTTTTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
*
83755651 GGGTGCTTT-GGTAATTTTACAAATTGA
1 GGGT-ATTTCGGTAATTTTACAAATTGA
* * * *
83755678 GGGTGTTTTGATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * *
83755705 GGGTGTTTAGGTAATTTCACAAATT-A
1 GGGTATTTCGGTAATTTTACAAATTGA
* * *
83755731 GAGGTATTTCGATAATTTTATAAATCGA
1 G-GGTATTTCGGTAATTTTACAAATTGA
* ** * *
83755759 TGGTATTTTAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
83755785 GGGTATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * * *
83755812 GGGTGTTTC----ATTGT-GAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* *
83755834 GAGTATTTCGATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * * * *
83755861 GGGTGTTT---T-AGTGT-GAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* ** *
83755883 TGGTATTTCTATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* *
83755910 GGGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
** * *
83755937 GGGTATTTCAATAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * * * *
83755963 GAGTATTTTGATAAATTTT-CAAATCGG
1 GGGTATTTCGGT-AATTTTACAAATTGA
* *
83755990 GGGTATTTCGATAATTTCACAAATTG-
1 GGGTATTTCGGTAATTTTACAAATTGA
*
83756016 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
83756033 CTCTTTATTA
Statistics
Matches: 391, Mismatches: 79, Indels: 41
0.77 0.15 0.08
Matches are distributed among these distances:
22 25 0.06
23 7 0.02
24 1 0.00
25 1 0.00
26 70 0.18
27 281 0.72
28 6 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATTGA
Found at i:83755849 original size:49 final size:48
Alignment explanation
Indices: 83755779--83755913 Score: 198
Period size: 49 Copynumber: 2.8 Consensus size: 48
83755769 GTAATTTCAC
* *
83755779 AATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTGTTTCATTGTGA
1 AATCGA-GGTATTTCGATAATTTTACAAATTGAGGGTGTTTCAGTGTGA
*
83755828 AATCGAGAGTATTTCGATAATTTTACAAATTGAGGGTGTTTTAGTGTGA
1 AATCGAG-GTATTTCGATAATTTTACAAATTGAGGGTGTTTCAGTGTGA
* *
83755877 AATCGATGGTATTTCTATAATTTTACAAATCGAGGGT
1 AATCGA-GGTATTTCGATAATTTTACAAATTGAGGGT
83755914 ATTTTGGTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
48 1 0.01
49 77 0.97
50 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.39
Consensus pattern (48 bp):
AATCGAGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCAGTGTGA
Found at i:83760556 original size:18 final size:19
Alignment explanation
Indices: 83760533--83760569 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
83760523 CAACGATATC
83760533 AAAAACATA-AAAATCATT
1 AAAAACATACAAAATCATT
83760551 AAAAACATATCAAAATCAT
1 AAAAACATA-CAAAATCAT
83760570 ACCTAATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.65, C:0.14, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAACATACAAAATCATT
Found at i:83767376 original size:17 final size:19
Alignment explanation
Indices: 83767354--83767399 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
83767344 ACATACATAC
83767354 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
83767371 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
83767390 AATACTAATT
1 AATAATAATT
83767400 AAAATTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:83773656 original size:50 final size:50
Alignment explanation
Indices: 83773592--83773691 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
83773582 ATAAAGAAAA
*
83773592 AACTACATTCACCTATCCTTATGGAACATTTGCTTTTAGAAGAATGCCAT
1 AACTACATTCACCTATCCTTATGGAACATTTGCTTTCAGAAGAATGCCAT
83773642 AACTACATTCACCTATCCTTATGGAACATTTGCTTTCAGAAGAATGCCAT
1 AACTACATTCACCTATCCTTATGGAACATTTGCTTTCAGAAGAATGCCAT
83773692 TTGGGTTATG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (50 bp):
AACTACATTCACCTATCCTTATGGAACATTTGCTTTCAGAAGAATGCCAT
Found at i:83776303 original size:37 final size:37
Alignment explanation
Indices: 83776252--83776331 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
83776242 CTTATTACGA
* * *
83776252 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
* *
83776289 GGTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
83776326 AGTCTT
1 AGTCTT
83776332 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:83776528 original size:47 final size:47
Alignment explanation
Indices: 83776450--83776962 Score: 812
Period size: 47 Copynumber: 10.7 Consensus size: 47
83776440 CCCTTCGGGA
* * * * * *
83776450 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83776497 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83776544 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83776591 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83776640 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83776689 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83776736 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83776785 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83776832 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83776881 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83776928 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
83776963 AGAATCCTAA
Statistics
Matches: 439, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 251 0.57
49 187 0.43
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83776642 original size:96 final size:95
Alignment explanation
Indices: 83776450--83776962 Score: 818
Period size: 96 Copynumber: 5.4 Consensus size: 95
83776440 CCCTTCGGGA
* * * * * * * *
83776450 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
83776514 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
83776544 CTTATCAC-ATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
83776608 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
*
83776640 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
83776705 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
83776736 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
83776801 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
83776832 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
83776897 ACTTTTACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
83776928 CTTATCAC-ATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACAATATATACACT-TTCACATTCATCACAT
83776963 AGAATCCTAA
Statistics
Matches: 398, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
93 1 0.00
94 69 0.17
96 283 0.71
98 45 0.11
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83781287 original size:30 final size:30
Alignment explanation
Indices: 83781251--83781442 Score: 142
Period size: 30 Copynumber: 6.4 Consensus size: 30
83781241 TTCGGCTATC
83781251 AATTATGAAAAGGGATGGTGATGACCATCA
1 AATTATGAAAAGGGATGGTGATGACCATCA
* *
83781281 AATTATGAAAAGGGATGGTGACGACCATTA
1 AATTATGAAAAGGGATGGTGATGACCATCA
* * *
83781311 AATTATGAAAAGGGGATGGCT--TCGGCTATCG
1 AATTATGAAAA-GGGATGG-TGAT-GACCATCA
* * ** *
83781342 TACTATGAAAAGGGATGGCTTCTG-CTATCA
1 AATTATGAAAAGGGATGG-TGATGACCATCA
* * ** *
83781372 AATTTTGAAAAGGGATTGTGACAACCATCG
1 AATTATGAAAAGGGATGGTGATGACCATCA
**
83781402 AACAATGAAAAGGGATGGTG--GCATCCATCA
1 AATTATGAAAAGGGATGGTGATG-A-CCATCA
83781432 AATTATGAAAA
1 AATTATGAAAA
83781443 AGAGATAGCT
Statistics
Matches: 126, Mismatches: 28, Indels: 16
0.74 0.16 0.09
Matches are distributed among these distances:
29 2 0.02
30 101 0.80
31 21 0.17
32 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGATGACCATCA
Found at i:83781393 original size:91 final size:89
Alignment explanation
Indices: 83781226--83781417 Score: 224
Period size: 91 Copynumber: 2.1 Consensus size: 89
83781216 TCACTGATGA
* *
83781226 ATGAAAAGTGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCAAATTATGAAA
1 ATGAAAAGGGATAGCTTCGGCTATCAACTATGAAAAGGGATGGTGATGACCATCAAATTATGAAA
*
83781291 AGGGATGGTGACGACCATTAAATT
66 AGGGATGGTGACAACCATTAAATT
* * ** * *
83781315 ATGAAAAGGGGATGGCTTCGGCTATCGTACTATGAAAAGGGATGGCTTCTG-CTATCAAATTTTG
1 ATGAAAA-GGGATAGCTTCGGCTATC-AACTATGAAAAGGGATGG-TGATGACCATCAAATTATG
* ** **
83781379 AAAAGGGATTGTGACAACCATCGAACA
63 AAAAGGGATGGTGACAACCATTAAATT
83781406 ATGAAAAGGGAT
1 ATGAAAAGGGAT
83781418 GGTGGCATCC
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
89 7 0.08
90 21 0.24
91 55 0.64
92 3 0.03
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.25
Consensus pattern (89 bp):
ATGAAAAGGGATAGCTTCGGCTATCAACTATGAAAAGGGATGGTGATGACCATCAAATTATGAAA
AGGGATGGTGACAACCATTAAATT
Found at i:83781439 original size:121 final size:120
Alignment explanation
Indices: 83781226--83781497 Score: 321
Period size: 121 Copynumber: 2.2 Consensus size: 120
83781216 TCACTGATGA
* ** **
83781226 ATGAAAAGTGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCAAATTATGAAA
1 ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACAACCATCAAACAATGAAA
* * * * *
83781291 AGGGATGGTGACGACCATTAAATTATGAAAAGGGGATGGCTTCGGCTATCGTACT
66 AGGGATGGTGACGACCATCAAATTATGAAAAAGAGATAGCTTCGGCTATCGAACT
* * * * *
83781346 ATGAAAAGGGATGGCTTCTGCTATCAAATTTTGAAAAGGGATTGTGACAACCATCGAACAATGAA
1 ATGAAAAGGGATAGCTTCGGCTATC-AATTATGAAAAGGGATGGTGACAACCATCAAACAATGAA
* * *
83781411 AAGGGATGGTGGC-ATCCATCAAATTATGAAAAAGAGATAGCTTTGGCTATCGAATT
65 AAGGGATGGTGACGA-CCATCAAATTATGAAAAAGAGATAGCTTCGGCTATCGAACT
* * *
83781467 ATGAAAAGTGATAACTTCGGTTATCGAATTA
1 ATGAAAAGGGATAGCTTCGGCTATC-AATTA
83781498 CAAAGAGGGA
Statistics
Matches: 125, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
120 23 0.18
121 102 0.82
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.26
Consensus pattern (120 bp):
ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACAACCATCAAACAATGAAA
AGGGATGGTGACGACCATCAAATTATGAAAAAGAGATAGCTTCGGCTATCGAACT
Found at i:83781492 original size:30 final size:31
Alignment explanation
Indices: 83781432--83781497 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 31
83781422 GCATCCATCA
* *
83781432 AATTATGAAAAAGAGATAGCTTTGGCTATCG
1 AATTATGAAAAAGAGATAACTTCGGCTATCG
* *
83781463 AATTATG-AAAAGTGATAACTTCGGTTATCG
1 AATTATGAAAAAGAGATAACTTCGGCTATCG
83781493 AATTA
1 AATTA
83781498 CAAAGAGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (31 bp):
AATTATGAAAAAGAGATAACTTCGGCTATCG
Found at i:83789355 original size:23 final size:23
Alignment explanation
Indices: 83789324--83789383 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
83789314 AGCTATGCCT
83789324 CACACGCCCGTGTGGAGGCAAAG
1 CACACGCCCGTGTGGAGGCAAAG
* *
83789347 CACATGCCCGTGTAGAGGCAAAG
1 CACACGCCCGTGTGGAGGCAAAG
83789370 CACACGCCCGTGTG
1 CACACGCCCGTGTG
83789384 TCCCACCCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.25, C:0.32, G:0.32, T:0.12
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGGCAAAG
Found at i:83789514 original size:28 final size:28
Alignment explanation
Indices: 83789474--83789536 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
83789464 GTCCCTAGCA
83789474 CGTGTCCCTCACACGGCATAGACACACC
1 CGTGTCCCTCACACGGCATAGACACACC
* * *
83789502 CGTGTCCCTCACATGGCCTAGACACGCC
1 CGTGTCCCTCACACGGCATAGACACACC
83789530 CGTGTCC
1 CGTGTCC
83789537 AAAAACCCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.19, C:0.43, G:0.21, T:0.17
Consensus pattern (28 bp):
CGTGTCCCTCACACGGCATAGACACACC
Found at i:83793438 original size:38 final size:38
Alignment explanation
Indices: 83793387--83793460 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
83793377 TTCAGAACTA
*
83793387 GGTACGAACACTATGAATTTCTTGTGATGCCATTTGAT
1 GGTACGAAAACTATGAATTTCTTGTGATGCCATTTGAT
*
83793425 GGTACGAAAACTATGAATTTTTTGTGATGCCATTTG
1 GGTACGAAAACTATGAATTTCTTGTGATGCCATTTG
83793461 GTTTAACTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (38 bp):
GGTACGAAAACTATGAATTTCTTGTGATGCCATTTGAT
Found at i:83797495 original size:20 final size:20
Alignment explanation
Indices: 83797472--83797517 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
83797462 TAAGCATGGG
* *
83797472 TTTGTACTAAATTGCATGAA
1 TTTGCACTAAATTGAATGAA
83797492 TTTGCACTAAATTGAATGAA
1 TTTGCACTAAATTGAATGAA
83797512 TTTGCA
1 TTTGCA
83797518 ATTTTATGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (20 bp):
TTTGCACTAAATTGAATGAA
Found at i:83797919 original size:40 final size:40
Alignment explanation
Indices: 83797847--83798029 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
83797837 TGAATATATT
* *
83797847 TATGGCACTTAGTATGCAATTCAAGAA-AGCTTCGGCTATA
1 TATGGCACTTAGTGTGCGATTCAA-AATAGCTTCGGCTATA
* * **
83797887 TTTGGCACTTAGTGTGCGATTCAAAATGGCTTCAACTATA
1 TATGGCACTTAGTGTGCGATTCAAAATAGCTTCGGCTATA
* ** * *
83797927 TATGGCATTTAGTGTGCGAGACTAAGATAGCTTCGGCTATG
1 TATGGCACTTAGTGTGCGATTC-AAAATAGCTTCGGCTATA
* * * *
83797968 TAAGGCAATTAGTGTGTGAGATT-AAAATAGCTTCGGCTATG
1 TATGGCACTTA--GTGTGCGATTCAAAATAGCTTCGGCTATA
83798009 TATTGGCACTTAGTGTGCGAT
1 TA-TGGCACTTAGTGTGCGAT
83798030 ATATCGAGTA
Statistics
Matches: 114, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 57 0.50
41 41 0.36
42 7 0.06
43 7 0.06
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (40 bp):
TATGGCACTTAGTGTGCGATTCAAAATAGCTTCGGCTATA
Found at i:83797963 original size:81 final size:82
Alignment explanation
Indices: 83797869--83798028 Score: 189
Period size: 83 Copynumber: 2.0 Consensus size: 82
83797859 TATGCAATTC
** * * *
83797869 AAGAAAGCTTCGGCTATATTTGGCACTTA-GTGTGCGATTCAAAATGGCTTCAACTATATA-TGG
1 AAGAAAGCTTCGGCTATATAAGGCAATTAGGTGTGAGATT-AAAATAGCTTCAACTATATATTGG
*
83797932 CATTTAGTGTGCGAGACT
65 CACTTAGTGTGCGAGACT
* * ** *
83797950 AAGATAGCTTCGGCTATGTAAGGCAATTAGTGTGTGAGATTAAAATAGCTTCGGCTATGTATTGG
1 AAGAAAGCTTCGGCTATATAAGGCAATTAG-GTGTGAGATTAAAATAGCTTCAACTATATATTGG
83798015 CACTTAGTGTGCGA
65 CACTTAGTGTGCGA
83798029 TATATCGAGT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
81 24 0.37
82 16 0.25
83 25 0.38
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (82 bp):
AAGAAAGCTTCGGCTATATAAGGCAATTAGGTGTGAGATTAAAATAGCTTCAACTATATATTGGC
ACTTAGTGTGCGAGACT
Found at i:83797980 original size:41 final size:42
Alignment explanation
Indices: 83797874--83798028 Score: 147
Period size: 41 Copynumber: 3.8 Consensus size: 42
83797864 AATTCAAGAA
* * * **
83797874 AGCTTCGGCTATAT-TTGGCACTTAGTGTGCGATTC-AAAAT
1 AGCTTCGGCTATGTATAGGCAATTAGTGTGCGAGACTAAAAT
* ** * * *
83797914 GGCTTCAACTATATAT-GGCATTTAGTGTGCGAGACTAAGAT
1 AGCTTCGGCTATGTATAGGCAATTAGTGTGCGAGACTAAAAT
* *
83797955 AGCTTCGGCTATGTA-AGGCAATTAGTGTGTGAGATTAAAAT
1 AGCTTCGGCTATGTATAGGCAATTAGTGTGCGAGACTAAAAT
* *
83797996 AGCTTCGGCTATGTATTGGCACTTAGTGTGCGA
1 AGCTTCGGCTATGTATAGGCAATTAGTGTGCGA
83798029 TATATCGAGT
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
40 27 0.29
41 52 0.56
42 14 0.15
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (42 bp):
AGCTTCGGCTATGTATAGGCAATTAGTGTGCGAGACTAAAAT
Found at i:83801321 original size:30 final size:30
Alignment explanation
Indices: 83801287--83801347 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83801277 TCCTTAACTC
83801287 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
83801317 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
83801347 A
1 A
83801348 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:83802955 original size:17 final size:17
Alignment explanation
Indices: 83802933--83802992 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
83802923 GAATGGTGAT
83802933 TGTATGAATTGATTTAA
1 TGTATGAATTGATTTAA
* *
83802950 TGTATGAA-TGAATGGTGAT
1 TGTATGAATTG-AT--TTAA
*
83802969 TGTATGAATTGATCTAA
1 TGTATGAATTGATTTAA
83802986 TGTATGA
1 TGTATGA
83802993 GAAAAATATA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 2 0.06
17 18 0.53
19 12 0.35
20 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (17 bp):
TGTATGAATTGATTTAA
Found at i:83802957 original size:32 final size:32
Alignment explanation
Indices: 83802909--83802992 Score: 100
Period size: 36 Copynumber: 2.6 Consensus size: 32
83802899 ATAAGGGACA
*
83802909 AATTG-TTTAA-GAATGAATGGTGATTGTATG
1 AATTGATTTAATGTATGAATGGTGATTGTATG
83802939 AATTGATTTAATGTATGAATGAATGGTGATTGTATG
1 AATTGATTTAATG--T--ATGAATGGTGATTGTATG
*
83802975 AATTGATCTAATGTATGA
1 AATTGATTTAATGTATGA
83802993 GAAAAATATA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
30 5 0.11
31 5 0.11
32 5 0.11
34 1 0.02
36 30 0.65
ACGTcount: A:0.35, C:0.01, G:0.24, T:0.40
Consensus pattern (32 bp):
AATTGATTTAATGTATGAATGGTGATTGTATG
Found at i:83802964 original size:36 final size:36
Alignment explanation
Indices: 83802919--83802992 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
83802909 AATTGTTTAA
*
83802919 GAATGAATGGTGATTGTATGAATTGATTTAATGTAT
1 GAATGAATGGTGATTGTATGAATTGATCTAATGTAT
83802955 GAATGAATGGTGATTGTATGAATTGATCTAATGTAT
1 GAATGAATGGTGATTGTATGAATTGATCTAATGTAT
83802991 GA
1 GA
83802993 GAAAAATATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.01, G:0.26, T:0.39
Consensus pattern (36 bp):
GAATGAATGGTGATTGTATGAATTGATCTAATGTAT
Found at i:83802974 original size:19 final size:19
Alignment explanation
Indices: 83802919--83802977 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
83802909 AATTGTTTAA
83802919 GAATGAATGGTGATTGTAT
1 GAATGAATGGTGATTGTAT
* *
83802938 GAATTG-AT--TTAATGTAT
1 GAA-TGAATGGTGATTGTAT
83802955 GAATGAATGGTGATTGTAT
1 GAATGAATGGTGATTGTAT
83802974 GAAT
1 GAAT
83802978 TGATCTAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 2 0.06
17 12 0.38
19 16 0.50
20 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.27, T:0.39
Consensus pattern (19 bp):
GAATGAATGGTGATTGTAT
Found at i:83809519 original size:39 final size:40
Alignment explanation
Indices: 83809474--83809645 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
83809464 GCTCCTCGTT
* * *
83809474 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
83809514 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
83809553 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
83809593 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
83809633 CAAATGCCTTCGG
1 CAAATGCCTTCGG
83809646 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:83809574 original size:40 final size:39
Alignment explanation
Indices: 83809476--83809698 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
83809466 TCCTCGTTCA
* * * *
83809476 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
83809515 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
83809554 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
83809594 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
83809634 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
83809675 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
83809699 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:83809658 original size:80 final size:79
Alignment explanation
Indices: 83809474--83809698 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
83809464 GCTCCTCGTT
* * * * *
83809474 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
83809538 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
83809553 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
83809618 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
83809633 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
83809697 GA
63 GA
83809699 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:83809707 original size:41 final size:41
Alignment explanation
Indices: 83809630--83809707 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
83809620 TTTGTATCTC
* * *
83809630 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
83809671 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
83809708 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:83837712 original size:46 final size:46
Alignment explanation
Indices: 83837568--83837781 Score: 195
Period size: 46 Copynumber: 4.6 Consensus size: 46
83837558 TTTGTGTGCT
* * * *
83837568 AGTGTAAGACACGTCTGGGACTTGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * * * *
83837614 AGTGTAAGACCGTGTCTTGGACATGGCATCAGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
83837662 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* *
83837708 AGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGAT--GTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
*
83837752 AGTGTAAAACAATGTCTGGGACATGGCATC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATC
83837782 AGTACGTATA
Statistics
Matches: 137, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 64 0.47
47 22 0.16
48 23 0.17
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Done.