Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 252 of 344
Found at i:83837819 original size:48 final size:46
Alignment explanation
Indices: 83837611--83837926 Score: 145
Period size: 46 Copynumber: 6.7 Consensus size: 46
83837601 CATTATGAGA
* * * *
83837611 GCCAGTGTAAGACCGTGTCTTGGACATGGCATC-AGC-ATTGAGACGAGA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGA-CTA-TGAGA--AGT
* * * * * *
83837659 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCT-CGAGATGT
1 GCCAATGTAAGACCATGTCTGGGACATGGCATC-GACTATGAGAAGT
* * *
83837703 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGT
1 --GCCAATGTAAGACCATGTCTGGGACATGGCATCGACTATGAGAAGT
* * *
83837749 GCCAGTGTAAAACAATGTCTGGGACATGGCATCAGTACGTAT-AGAAGT
1 GCCAATGTAAGACCATGTCTGGGACATGGCATC-G-AC-TATGAGAAGT
*
83837797 GTCAATGTAAGACCATGTCTGGGACATGGCATCGAC-AT-AGATATGT
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGACTATGAGA-A-GT
* * * * * *
83837843 GAGAGCTAGTGTAA-AACATTGTCTAGGATATGGCATCGACT-TGATGGA-T
1 ----GCCAATGTAAGACCA-TGTCTGGGACATGGCATCGACTATGA-GAAGT
*
83837892 GAACCAGTGTAAGACCATGTCTGGGACATGGCATC
1 G--CCAATGTAAGACCATGTCTGGGACATGGCATC
83837927 AGCATTATAC
Statistics
Matches: 213, Mismatches: 31, Indels: 49
0.73 0.11 0.17
Matches are distributed among these distances:
44 17 0.08
45 18 0.08
46 54 0.25
47 38 0.18
48 49 0.23
49 7 0.03
50 27 0.13
51 2 0.01
52 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
GCCAATGTAAGACCATGTCTGGGACATGGCATCGACTATGAGAAGT
Found at i:83843820 original size:40 final size:40
Alignment explanation
Indices: 83843697--83843821 Score: 205
Period size: 40 Copynumber: 3.1 Consensus size: 40
83843687 TTAAGCCCGG
* * *
83843697 ATATAGTACCAGTACTAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
83843737 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
83843777 ATATATTACCAGCATGAAGCCTGCGGGATTTAACGCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
83843817 ATATA
1 ATATA
83843822 ATATATCAAG
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:83844639 original size:2 final size:2
Alignment explanation
Indices: 83844632--83844665 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
83844622 AAGCCGAATG
83844632 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
83844666 TATATATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:83847954 original size:40 final size:40
Alignment explanation
Indices: 83847769--83847940 Score: 229
Period size: 40 Copynumber: 4.3 Consensus size: 40
83847759 GCTCCTCGTT
* * * * *
83847769 CGAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
83847809 C-AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCA
1 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
83847848 CGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCA
1 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
83847888 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
83847928 CAAAGGCCTTCGG
1 CGAATGCCTTCGG
83847941 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
39 33 0.28
40 84 0.72
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:83865893 original size:26 final size:26
Alignment explanation
Indices: 83865858--83865907 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
83865848 AAAAGTGTAA
* *
83865858 TTTTTTTAAA-GTTTGTATTAAATGC
1 TTTTTTTAAATGTATGTACTAAATGC
83865883 TTTTTGTTAAATGTATGTACTAAAT
1 TTTTT-TTAAATGTATGTACTAAAT
83865908 AAGATTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 5 0.24
27 11 0.52
ACGTcount: A:0.30, C:0.04, G:0.12, T:0.54
Consensus pattern (26 bp):
TTTTTTTAAATGTATGTACTAAATGC
Found at i:83871278 original size:44 final size:44
Alignment explanation
Indices: 83871229--83871317 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
83871219 CAAACATATA
*
83871229 ATTATGCCACAAATTCAAATTAGCCGAATGCACATATAGATAAT
1 ATTATGCCACAAATTCAAATTAGACGAATGCACATATAGATAAT
*
83871273 ATTATGCCACAAATTCAAATTGGACGAATGCACATATAGATAAT
1 ATTATGCCACAAATTCAAATTAGACGAATGCACATATAGATAAT
83871317 A
1 A
83871318 ACATAATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.27
Consensus pattern (44 bp):
ATTATGCCACAAATTCAAATTAGACGAATGCACATATAGATAAT
Found at i:83871637 original size:56 final size:56
Alignment explanation
Indices: 83871570--83871678 Score: 155
Period size: 56 Copynumber: 1.9 Consensus size: 56
83871560 TCTTACATGT
* ** * * *
83871570 AATCACATATCGATGCCAATGTACTAGACGTGGTCTTATTCGCACACATATATCGG
1 AATCACATATCGATACCAACATACTAAAAGTGGTCTTACTCGCACACATATATCGG
*
83871626 AATCACATATCGATACCAACATATTAAAAGTGGTCTTACTCGCACACATATAT
1 AATCACATATCGATACCAACATACTAAAAGTGGTCTTACTCGCACACATATAT
83871679 ATATGCCATT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (56 bp):
AATCACATATCGATACCAACATACTAAAAGTGGTCTTACTCGCACACATATATCGG
Found at i:83873068 original size:90 final size:89
Alignment explanation
Indices: 83872915--83873166 Score: 251
Period size: 90 Copynumber: 2.8 Consensus size: 89
83872905 ATCATCAACG
** * * * * *
83872915 AATGAAAAGGGATAACTTCGGCTATCAGTTATGAAAAGGGATGG-TGACGACCATAAAATTATGA
1 AATGAAAAGGGATGGCTTCGGCTATCAATTATGAAAAGGGATGGCT-TCGGCTATCAAATTATGA
* * * * *
83872979 AAATGGATGGCT-TCAGCTATCG-TAC
65 AAAGGGATGG-TGACAACCAT-GAAAC
*
83873004 TATGAAAAGGGATGGCTTCGGCTATCAATCTATGAAAAGGGATGGCTTCGGCTATCAAATTATGA
1 AATGAAAAGGGATGGCTTCGGCTATCAAT-TATGAAAAGGGATGGCTTCGGCTATCAAATTATGA
83873069 AAAGGGATGGTGACAACCATGAAAC
65 AAAGGGATGGTGACAACCATGAAAC
* * * * * *
83873094 AATGAAAAGGGATGG-TGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTGTCGAATTATG
1 AATGAAAAGGGATGGCT-TCGGCTATC-AATTATGAAAAGGGATGGCTTCGGCTATCAAATTATG
83873158 AAAAGGGAT
64 AAAAGGGAT
83873167 AACTTCGATT
Statistics
Matches: 137, Mismatches: 20, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
89 28 0.20
90 105 0.77
91 4 0.03
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (89 bp):
AATGAAAAGGGATGGCTTCGGCTATCAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAA
AAGGGATGGTGACAACCATGAAAC
Found at i:83873167 original size:30 final size:30
Alignment explanation
Indices: 83872916--83873196 Score: 198
Period size: 30 Copynumber: 9.4 Consensus size: 30
83872906 TCATCAACGA
** *
83872916 ATGAAAAGGGATAACTTCGGCTATC-AGTT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
* * * **
83872945 ATGAAAAGGGATGG-TGACGACCATAAAATT
1 ATGAAAAGGGATGGCT-TCGGCTATCGAATT
* * * *
83872975 ATGAAAATGGATGGCTTCAGCTATCGTACT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
83873005 ATGAAAAGGGATGGCTTCGGCTATC-AATCT
1 ATGAAAAGGGATGGCTTCGGCTATCGAAT-T
*
83873035 ATGAAAAGGGATGGCTTCGGCTATCAAATT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
* ** * **
83873065 ATGAAAAGGGATGG-TGACAACCAT-GAAACA
1 ATGAAAAGGGATGGCT-TCGGCTATCG-AATT
* * * *
83873095 ATGAAAAGGGATGG-TGACGACCATCAAATT
1 ATGAAAAGGGATGGCT-TCGGCTATCGAATT
* *
83873125 ATGAAAAGGGATAGCTTCGGCTGTCGAATT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
** **
83873155 ATGAAAAGGGATAACTTCGATTATCGAATT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
*
83873185 A-CAAAAGGGATG
1 ATGAAAAGGGATG
83873197 TGTCAACCAT
Statistics
Matches: 200, Mismatches: 43, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
28 1 0.00
29 28 0.14
30 166 0.83
31 5 0.03
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGGCTATCGAATT
Found at i:83874825 original size:13 final size:13
Alignment explanation
Indices: 83874807--83874831 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83874797 GTAATCACGT
83874807 CACACGGGCGTGG
1 CACACGGGCGTGG
83874820 CACACGGGCGTG
1 CACACGGGCGTG
83874832 TCCCTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.44, T:0.08
Consensus pattern (13 bp):
CACACGGGCGTGG
Found at i:83880913 original size:20 final size:19
Alignment explanation
Indices: 83880888--83880951 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
83880878 CTATGTTTTA
*
83880888 TTTATTCTTATTTTTATTTC
1 TTTATT-TTAATTTTATTTC
83880908 TTTATTTTAATTTTA-TT-
1 TTTATTTTAATTTTATTTC
* *
83880925 TTCATTTCAATTTTATTAT-
1 TTTATTTTAATTTTATT-TC
83880944 TTTATTTT
1 TTTATTTT
83880952 GAAAGACATA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 13 0.35
18 3 0.08
19 15 0.41
20 6 0.16
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTATTTTAATTTTATTTC
Found at i:83883842 original size:13 final size:13
Alignment explanation
Indices: 83883826--83883858 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
83883816 TTTAATTAAA
*
83883826 TTAGTTAATTAGT
1 TTAGATAATTAGT
83883839 TTAGATAATTAGT
1 TTAGATAATTAGT
83883852 TTA-ATAA
1 TTAGATAA
83883859 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:83893277 original size:14 final size:14
Alignment explanation
Indices: 83893258--83893286 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
83893248 TATCATGGCT
83893258 CAAAGCCAAATCAG
1 CAAAGCCAAATCAG
83893272 CAAAGCCAAATCAG
1 CAAAGCCAAATCAG
83893286 C
1 C
83893287 CAAAATGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.31, G:0.14, T:0.07
Consensus pattern (14 bp):
CAAAGCCAAATCAG
Found at i:83904514 original size:20 final size:20
Alignment explanation
Indices: 83904500--83904555 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
83904490 CATGATTGAG
83904500 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
83904520 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
83904540 ATGAAATGCACATGAT
1 ATGATATGCACATGAT
83904556 GAATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:83904516 original size:11 final size:11
Alignment explanation
Indices: 83904500--83904555 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83904490 CATGATTGAG
83904500 ATGATATGCAC
1 ATGATATGCAC
*
83904511 ATGATATG--T
1 ATGATATGCAC
83904520 ATGATATGCAC
1 ATGATATGCAC
*
83904531 ATGATATG--T
1 ATGATATGCAC
*
83904540 ATGAAATGCAC
1 ATGATATGCAC
83904551 ATGAT
1 ATGAT
83904556 GAATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:83904676 original size:25 final size:26
Alignment explanation
Indices: 83904605--83904701 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
83904595 GAGGAAGTGC
83904605 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
83904631 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
83904657 AAAAGGGCTT-TGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
83904682 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
83904702 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 32 0.48
26 34 0.52
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:83904686 original size:51 final size:49
Alignment explanation
Indices: 83904605--83904714 Score: 168
Period size: 51 Copynumber: 2.2 Consensus size: 49
83904595 GAGGAAGTGC
*
83904605 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTT-TGCCCCAG-TTATT
83904656 GAAAAGGGCTT-TGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTATT
83904705 AAAAGAGGCT
1 AAAAG-GGCT
83904715 AGGCCTCCAG
Statistics
Matches: 56, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
48 5 0.09
49 9 0.16
50 8 0.14
51 24 0.43
52 10 0.18
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTATT
Found at i:83919565 original size:14 final size:14
Alignment explanation
Indices: 83919546--83919578 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
83919536 TTATGAAACG
83919546 ACGTAAATCCAACA
1 ACGTAAATCCAACA
*
83919560 ACGTAAATCCAATA
1 ACGTAAATCCAACA
83919574 ACGTA
1 ACGTA
83919579 CGACGATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.48, C:0.24, G:0.09, T:0.18
Consensus pattern (14 bp):
ACGTAAATCCAACA
Found at i:83921866 original size:51 final size:51
Alignment explanation
Indices: 83921809--83921931 Score: 167
Period size: 51 Copynumber: 2.4 Consensus size: 51
83921799 CACATAGGCT
** * * * *
83921809 AGGCCAAGTTAGGTGTGTGGGTTTTGGGCCAGGTCGTTTTCCATATGGGCA
1 AGGCCAAGTTAGGCATGTGGGTTTTGGGCCAGGTCATTGTCCACACGGGCA
83921860 AGGCCAAGTTAGGCATGTGGGTTTTGGGCCAGGTCATTGTCCACACGGGCA
1 AGGCCAAGTTAGGCATGTGGGTTTTGGGCCAGGTCATTGTCCACACGGGCA
*
83921911 AGGCCAA-TCTGGGCATGTGGG
1 AGGCCAAGT-TAGGCATGTGGG
83921932 CCACACAGGC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
50 1 0.02
51 63 0.98
ACGTcount: A:0.18, C:0.19, G:0.37, T:0.26
Consensus pattern (51 bp):
AGGCCAAGTTAGGCATGTGGGTTTTGGGCCAGGTCATTGTCCACACGGGCA
Found at i:83930249 original size:46 final size:46
Alignment explanation
Indices: 83930182--83930357 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
83930172 TGTAACCCGC
* *
83930182 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * *
83930228 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * * * *
83930274 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
83930321 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83930358 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 69 0.65
47 33 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:83930318 original size:93 final size:93
Alignment explanation
Indices: 83930190--83930360 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
83930180 GCCCATAAGT
* *
83930190 GAACTCGGACTCAACTCAATGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83930255 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
83930283 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83930348 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83930361 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:83930814 original size:30 final size:30
Alignment explanation
Indices: 83930780--83930836 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
83930770 ATTTAATACG
83930780 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83930810 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
83930837 TAGGCTCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83938645 original size:29 final size:29
Alignment explanation
Indices: 83938612--83938684 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
83938602 ATTGTGAGAT
* *
83938612 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
83938641 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
83938670 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
83938685 ACGGTTGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 33 0.85
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:83941208 original size:93 final size:93
Alignment explanation
Indices: 83941100--83941270 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
83941090 GCCCATAAGT
* * * *
83941100 GAACTCGGACTCAACTCAATGAG-CTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAGTCA
1 GAACTCGGACTCAACTCAACGAGTCTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83941164 ACGAGTTTGGATGCCTAGTTATATTTCAC
65 ACGAGTTCGGATGCCTAGTTATATTTCAC
*
83941193 GAACTCGGACTCAACTCAACGAGTTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83941258 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83941271 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 69 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTATATTTCAC
Found at i:83941253 original size:46 final size:45
Alignment explanation
Indices: 83941092--83941263 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 45
83941082 TGTAACCCGC
* * *
83941092 CCATAAGTGAACTCGGACTCAACTCAATGAG-CTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTC--GCATTCGCAT
* * *
83941138 CCATAAGTGAACTCGGACTCAAGTCAACGAGTTT-GGATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTCGCATTCGC-A-T
* **
83941183 -TATATTTCACGAACTCGGACTCAACTCAACGAGTTTCGACATTCGCAT
1 CCATAAGT---GAACTCGGACTCAACTCAACGAGTTTCG-CATTCGCAT
83941231 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
83941264 CGGATGCTCA
Statistics
Matches: 101, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 8 0.08
45 1 0.01
46 54 0.53
47 26 0.26
48 2 0.02
49 8 0.08
50 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTTCGCATTCGCAT
Found at i:83941725 original size:30 final size:30
Alignment explanation
Indices: 83941691--83941750 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83941681 ATTTAATACG
83941691 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83941721 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
83941751 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83944620 original size:12 final size:12
Alignment explanation
Indices: 83944603--83944632 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
83944593 GTGTTAACAG
83944603 ACTTAATTCATT
1 ACTTAATTCATT
83944615 ACTTAATTCATT
1 ACTTAATTCATT
83944627 ACTTAA
1 ACTTAA
83944633 ACAGCTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.47
Consensus pattern (12 bp):
ACTTAATTCATT
Found at i:83947122 original size:40 final size:40
Alignment explanation
Indices: 83947092--83947297 Score: 306
Period size: 40 Copynumber: 5.2 Consensus size: 40
83947082 GGACTAAGAT
* * * *
83947092 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
83947132 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
83947172 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
83947212 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
83947252 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
83947291 CCGAAGG
1 CCGAAGG
83947298 TACTTGAACG
Statistics
Matches: 155, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 30 0.19
40 125 0.81
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:83947176 original size:80 final size:80
Alignment explanation
Indices: 83947039--83947297 Score: 308
Period size: 80 Copynumber: 3.2 Consensus size: 80
83947029 TTGAATGCTG
* * * * * **
83947039 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
83947102 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
83947119 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
83947184 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
83947199 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
83947263 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
83947278 ACCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
83947298 TACTTGAACG
Statistics
Matches: 155, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 32 0.21
80 117 0.75
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:83947253 original size:120 final size:119
Alignment explanation
Indices: 83947039--83947297 Score: 315
Period size: 120 Copynumber: 2.2 Consensus size: 119
83947029 TTGAATGCTG
* * * *
83947039 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTTT
1 TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTC
*
83947104 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
83947159 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * *
83947222 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
83947278 ACCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
83947298 TACTTGAACG
Statistics
Matches: 118, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
119 31 0.26
120 81 0.69
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:83955014 original size:40 final size:40
Alignment explanation
Indices: 83954964--83955224 Score: 305
Period size: 40 Copynumber: 6.5 Consensus size: 40
83954954 TTGAATGCTG
* * * * *
83954964 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAA
** * *
83955004 TCCGGACTAAGAT-CCGAAGGCCA-TTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTTGTGCGAGTTATTAAA
83955044 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
*
83955084 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
83955124 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * *
83955164 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * *
83955203 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
83955225 CTTGAACGAG
Statistics
Matches: 197, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
39 36 0.18
40 153 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
Found at i:83961243 original size:13 final size:13
Alignment explanation
Indices: 83961224--83961256 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
83961214 AGGATTTTGA
83961224 TTATCTGA-TCTG
1 TTATCTGACTCTG
83961236 TATATCTGACTCTG
1 T-TATCTGACTCTG
83961250 TTATCTG
1 TTATCTG
83961257 GATTTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.05
13 13 0.68
14 5 0.26
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (13 bp):
TTATCTGACTCTG
Found at i:83966637 original size:46 final size:46
Alignment explanation
Indices: 83966581--83966756 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
83966571 TGGTTGAGCA
*
83966581 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *** * * * *
83966627 TCCGAACTCGTTGAGTTGAGCCCGAGTTCGAGAGATGTAT-CTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ACG
* *
83966674 TCCGAGCTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
83966720 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83966757 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 71 0.68
47 34 0.32
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:83966737 original size:93 final size:93
Alignment explanation
Indices: 83966578--83966748 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
83966568 GGATGGTTGA
* * *
83966578 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
83966643 TGAGCCCGAGTTCGAGAGATGTATCTAG
66 TGAGCCCGAGTTCGAGAGATGTATCTAG
* * *
83966671 GCATCCGAGCTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
83966736 TGAGTCCGAGTTC
66 TGAGCCCGAGTTC
83966749 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGCCCGAGTTCGAGAGATGTATCTAG
Found at i:83972398 original size:31 final size:30
Alignment explanation
Indices: 83972349--83972416 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
83972339 TTTTTAAATG
* *
83972349 TGTATA-ATTGAATCAAAA-TCAAAGTTTCT
1 TGTATATATTGAACCAAAATTC-AAGTTTCA
83972378 TGTATATATATGAACCAAAATTCAAGTTTCA
1 TGTATATAT-TGAACCAAAATTCAAGTTTCA
*
83972409 TGTGTATA
1 TGTATATA
83972417 ACAAAATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 6 0.18
30 2 0.06
31 23 0.70
32 2 0.06
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (30 bp):
TGTATATATTGAACCAAAATTCAAGTTTCA
Found at i:83977435 original size:30 final size:30
Alignment explanation
Indices: 83977418--83977564 Score: 97
Period size: 30 Copynumber: 4.9 Consensus size: 30
83977408 TTTTTATAAT
*
83977418 TTGATAGTTGAAGCCATCCCTTTTCATAGA
1 TTGATAGTCGAAGCCATCCCTTTTCATAGA
**
83977448 TTGATAGTCGAAGCCATCCCAATTCATAG-
1 TTGATAGTCGAAGCCATCCCTTTTCATAGA
* * * *
83977477 TACGATAG-CTGAAGTCAACCCTTTACATA-A
1 T-TGATAGTC-GAAGCCATCCCTTTTCATAGA
* *
83977507 TTTGATGGTCGTCA-CCATCCCTTTTCATA-A
1 -TTGATAGTCG-AAGCCATCCCTTTTCATAGA
* * * *
83977537 TTTGATAGCCAAAGCTATTCCTTTTCAT
1 -TTGATAGTCGAAGCCATCCCTTTTCAT
83977565 TTGTCGAGGA
Statistics
Matches: 89, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
29 3 0.03
30 83 0.93
31 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (30 bp):
TTGATAGTCGAAGCCATCCCTTTTCATAGA
Found at i:83977544 original size:60 final size:60
Alignment explanation
Indices: 83977342--83977545 Score: 178
Period size: 60 Copynumber: 3.4 Consensus size: 60
83977332 AATAATAATA
* * * ** **
83977342 CATCCATTTTCATAATTCGATAACTGAAGTTATCCCTTTTCATTGTTCAATGGTCGTCAC
1 CATCCCTTTTCATAATTCGATAGCTGAAGTCATCCCTTTTCATAATTTGATGGTCGTCAC
** * * * * * *
83977402 CATCTTTTTTTATAATTTGATAGTTGAAGCCATCCCTTTTCATAGA-TTGATAGTCG-AAGC
1 CATCCCTTTTCATAATTCGATAGCTGAAGTCATCCCTTTTCATA-ATTTGATGGTCGTCA-C
** * * * *
83977462 CATCCCAATTCATAGTACGATAGCTGAAGTCAACCCTTTACATAATTTGATGGTCGTCAC
1 CATCCCTTTTCATAATTCGATAGCTGAAGTCATCCCTTTTCATAATTTGATGGTCGTCAC
*
83977522 CATCCCTTTTCATAATTTGATAGC
1 CATCCCTTTTCATAATTCGATAGC
83977546 CAAAGCTATT
Statistics
Matches: 107, Mismatches: 33, Indels: 8
0.72 0.22 0.05
Matches are distributed among these distances:
59 2 0.02
60 104 0.97
61 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (60 bp):
CATCCCTTTTCATAATTCGATAGCTGAAGTCATCCCTTTTCATAATTTGATGGTCGTCAC
Found at i:83979970 original size:29 final size:29
Alignment explanation
Indices: 83979928--83980003 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
83979918 GAACTATTAT
*
83979928 CATGGCCCGAAGCCAAATCATTCGATATG
1 CATGACCCGAAGCCAAATCATTCGATATG
*
83979957 CATGACCCGAAGCCAAATCATTCGGTATG
1 CATGACCCGAAGCCAAATCATTCGATATG
*
83979986 CTTGACCCGAAGCCAAAT
1 CATGACCCGAAGCCAAAT
83980004 GGTAAAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (29 bp):
CATGACCCGAAGCCAAATCATTCGATATG
Found at i:83980485 original size:17 final size:19
Alignment explanation
Indices: 83980463--83980499 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
83980453 TAGTCTTTAT
83980463 TTCACA-AATAC-ATAAAA
1 TTCACACAATACAATAAAA
*
83980480 TTCACACAATTCAATAAAA
1 TTCACACAATACAATAAAA
83980499 T
1 T
83980500 CCATGCTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 4 0.24
19 7 0.41
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (19 bp):
TTCACACAATACAATAAAA
Found at i:83987135 original size:94 final size:93
Alignment explanation
Indices: 83986932--83987122 Score: 219
Period size: 94 Copynumber: 2.0 Consensus size: 93
83986922 GTAGCCGACG
* * *
83986932 CATGTCCTAGGCAT-GTCTTACACTGGCTCTCATAATGTGACTGATGCATATCCCAGACATGTCT
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGACTGATGCATATCCCAGACATGTCT
* ***
83986996 TGCACTAGCCCTCGTCTCAATGTCGATGC
66 TACACTAGCCCAAATCTCAATGTC-ATGC
* *
83987025 CATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTG-GTCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGACT-GATGCATATCCCAGACATGTC
*
83987089 TTACACTGGCACACAAATCTC-ATGT-ATTGC
65 TTACACTAGC-C-CAAATCTCAATGTCA-TGC
83987119 CATG
1 CATG
83987123 GTCCAACCAT
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
93 14 0.17
94 59 0.71
95 5 0.06
96 5 0.06
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGACTGATGCATATCCCAGACATGTCT
TACACTAGCCCAAATCTCAATGTCATGC
Found at i:83998437 original size:47 final size:47
Alignment explanation
Indices: 83998332--83998691 Score: 558
Period size: 47 Copynumber: 7.6 Consensus size: 47
83998322 CCCTTCGGGA
* * * * * *
83998332 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
83998379 CCTGTCGCATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83998426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83998473 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83998520 CTTATCAGATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83998567 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83998616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83998663 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
83998692 TATTCAAATA
Statistics
Matches: 287, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 223 0.78
49 64 0.22
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84008867 original size:15 final size:16
Alignment explanation
Indices: 84008830--84008867 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
84008820 ATAAAAAGAT
84008830 TTGATTTGAAAACATA
1 TTGATTTGAAAACATA
* *
84008846 TTTATTTTAAAAC-TA
1 TTGATTTGAAAACATA
84008861 TTGATTT
1 TTGATTT
84008868 AACCCCGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (16 bp):
TTGATTTGAAAACATA
Found at i:84014256 original size:24 final size:24
Alignment explanation
Indices: 84014229--84014301 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
84014219 ATTCAAGCCG
*
84014229 GCACACATAGTGCCATTCGACTTC
1 GCACACATAGTGCCATTCGACTCC
* *
84014253 GCACACATAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCGACTCC
*
84014277 GCACACTTAGTGCCAATATCGACTC
1 GCACACATAGTGCC-AT-TCGACTC
84014302 ATATGATAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 34 0.83
25 2 0.05
26 5 0.12
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (24 bp):
GCACACATAGTGCCATTCGACTCC
Found at i:84037600 original size:45 final size:46
Alignment explanation
Indices: 84037521--84037680 Score: 197
Period size: 45 Copynumber: 3.6 Consensus size: 46
84037511 CCAGCATTTC
* * *
84037521 GCCTGCTAGGATCG--AGGCCCGATTA-TCATTTCATCGGCATTATA
1 GCCTGCTAGGCTCGAAAGGCCCGAATAGT-ATCTCATCGGCATTATA
*
84037565 GCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCATCGACATTATA
1 GCCTGCTAGGCTCGAAAGGCCCGAATAGTATCTCATCGGCATTATA
* * * *
84037610 GCCTGCTAGGC-CCAAAGGCCCGAATAGTGTCTCACCGGCATAATA
1 GCCTGCTAGGCTCGAAAGGCCCGAATAGTATCTCATCGGCATTATA
84037655 GCCTGCTAGGCTC-AAAGGCCCGAATA
1 GCCTGCTAGGCTCGAAAGGCCCGAATA
84037681 TAATACCAGC
Statistics
Matches: 102, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
44 17 0.17
45 82 0.80
46 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (46 bp):
GCCTGCTAGGCTCGAAAGGCCCGAATAGTATCTCATCGGCATTATA
Found at i:84037721 original size:38 final size:38
Alignment explanation
Indices: 84037673--84037843 Score: 234
Period size: 38 Copynumber: 4.5 Consensus size: 38
84037663 GGCTCAAAGG
* * *
84037673 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
84037711 CCCGGATATAATACCAGCACGAAGCCTGCAGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
84037749 CCCAGATATATTATCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
84037787 CCCGGATATATTACCAGCACGAAGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
84037825 CCCAGATATAATTCCAGCA
1 CCCGGATATAATACCAGCA
84037844 TATAGCCTGC
Statistics
Matches: 117, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 117 1.00
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:84037862 original size:76 final size:76
Alignment explanation
Indices: 84037678--84037870 Score: 228
Period size: 76 Copynumber: 2.5 Consensus size: 76
84037668 AAAGGCCCGA
* * * * *
84037678 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCAGG
1 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAATACCAGCACGAAGCCTACAGG
84037743 AATTAACCCAG
66 AATTAACCCAG
* * * *
84037754 ATATATTATCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTACGGG
1 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAATACCAGCACGAAGCCTACAGG
*
84037819 ATTTAACCCAG
66 AATTAACCCAG
* ** *
84037830 ATATAATT-CCAGCA-TATAGCCTGCAGTCTTTAAGCCGGATA
1 ATAT-ATTACCAGCACGA-AGCCTGCAGGATTTAACCCGGATA
84037871 CAAATATCAT
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
75 1 0.01
76 97 0.96
77 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (76 bp):
ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAATACCAGCACGAAGCCTACAGG
AATTAACCCAG
Found at i:84038248 original size:43 final size:45
Alignment explanation
Indices: 84038140--84038250 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 45
84038130 ACATAACATT
* * * *
84038140 TCATTTCACCGGCATTATAGACTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCG-ATAA
* * *
84038186 T-ATTTCACTGGCATCATAGCCTACTAAGCTCAAA-GCCCG-TTA
1 TCATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCGATAA
84038228 TCATTTCACCGGCATTATAGCCT
1 TCATTTCACCGGCATTATAGCCT
84038251 GCTAGGCCCG
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 3 0.05
43 19 0.35
44 4 0.07
45 28 0.51
46 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (45 bp):
TCATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCGATAA
Found at i:84038265 original size:43 final size:44
Alignment explanation
Indices: 84038140--84038268 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 44
84038130 ACATAACATT
* *
84038140 TCATTTCACCGGCATTATAGACTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCG-ATAA
* * * * *
84038186 T-ATTTCACTGGCATCATAGCCTACTAAGCTCAAAGCCCG-TTA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATAA
* *
84038228 TCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGA
84038269 ATATCACATT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 3 0.04
43 32 0.47
44 4 0.06
45 28 0.41
46 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATAA
Found at i:84043132 original size:40 final size:40
Alignment explanation
Indices: 84043085--84043288 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
84043075 CGGGCTTTAA
** * *
84043085 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
84043125 CCGGATATAGTAGTTCGCACAAATACCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
84043165 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84043205 CCGGA-ATTAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
84043245 CCGGA-ATTAGTCACTAGCACAAATGCCTTCAGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
84043285 CCGG
1 CCGG
84043289 TTATCATCCG
Statistics
Matches: 148, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 147 0.99
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84045271 original size:39 final size:40
Alignment explanation
Indices: 84045166--84045373 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
84045156 TATTCGAATG
* * *
84045166 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
84045207 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
84045247 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
84045286 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * **
84045326 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
84045366 ATATCCGG
1 ATATCCGG
84045374 TTAAATTCCG
Statistics
Matches: 146, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 37 0.25
40 80 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:84045306 original size:79 final size:81
Alignment explanation
Indices: 84045166--84045352 Score: 247
Period size: 79 Copynumber: 2.3 Consensus size: 81
84045156 TATTCGAATG
* * *
84045166 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGC
84045231 ATTTGTGCGAGTTACT
66 ATTTGTGCGAGTTACT
* * **
84045247 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAG
84045308 GCATTTGTGCGAGTTACT
64 GCATTTGTGCGAGTTACT
* *
84045326 ATAACCGGGCTATGTCCCGAAGGCATT
1 ATATCCGGGCTAAGTCCCGAAGGCATT
84045353 TGAACGAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 51 0.55
80 29 0.31
81 12 0.13
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGC
ATTTGTGCGAGTTACT
Found at i:84045376 original size:79 final size:78
Alignment explanation
Indices: 84045170--84045387 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
84045160 CGAATGATAT
* * *
84045170 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
84045234 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
84045251 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
84045314 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
84045330 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
84045388 TATGTGATTT
Statistics
Matches: 117, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 59 0.50
80 45 0.38
81 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:84055186 original size:79 final size:82
Alignment explanation
Indices: 84055050--84055232 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 82
84055040 TCGGATGATG
* *
84055050 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
* *
84055114 TGTGCGAGTTACTA-AT
66 TGTGCAAGTTACTATAA
* * * **
84055130 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
84055192 TTGTGCAAGTTACTATAA
65 TTGTGCAAGTTACTATAA
*
84055210 T-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84055233 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCAAGTTACTATAA
Found at i:84055248 original size:40 final size:41
Alignment explanation
Indices: 84055050--84055234 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
84055040 TCGGATGATG
* * *
84055050 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
84055090 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84055130 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
84055169 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84055210 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84055235 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:84055257 original size:79 final size:79
Alignment explanation
Indices: 84055103--84055257 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
84055093 GGACTAAGAT
* * **
84055103 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
84055168 ATCCGGGTTAAGTC
66 ATCCGAGTTAAGTC
* *
84055182 CCGAAGGCATTTGTGCAAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGTTACTA-AATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
84055245 TATATCC-AGTTAA
63 TAAATCCGAGTTAA
84055258 ATTTTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 39 0.60
80 26 0.40
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAGTC
Found at i:84058274 original size:40 final size:40
Alignment explanation
Indices: 84058217--84058405 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
84058207 TCCAAACACA
* *
84058217 AATGCCTTCGGGACTTAGCCCGGATGTAACAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
* * * * *
84058257 AATGCCTTCAGGG-CTTAGCCCAGATATAACAACTAGGATG
1 AATGCCTTC-GGGACTTAACCCGGATATAACAACCAGCACG
* *
84058297 AATGCCTTCGGGACTTAACCTGGATATAAAAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
84058337 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
* *
84058377 AAAGCCTTCGGGACTTAACCTGGATATAA
1 AATGCCTTCGGGACTTAACCCGGATATAA
84058406 TCCTCAATTA
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 3 0.02
40 125 0.95
41 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
Found at i:84060971 original size:18 final size:17
Alignment explanation
Indices: 84060941--84060981 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
84060931 AAAAGAAAAT
* *
84060941 AATAAAATTAAAATGAA
1 AATAAAATAAAAATAAA
84060958 AATAGAAATAAAAATAAA
1 AATA-AAATAAAAATAAA
84060976 AATAAA
1 AATAAA
84060982 GAGATAATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.20
Consensus pattern (17 bp):
AATAAAATAAAAATAAA
Found at i:84060990 original size:23 final size:24
Alignment explanation
Indices: 84060939--84060990 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
84060929 TCAAAAGAAA
* *
84060939 ATAAT-AAAATTAAAATGAAAATAG
1 ATAATAAAAATAAAAAT-AAAAGAG
84060963 A-AATAAAAATAAAAAT-AAAGAG
1 ATAATAAAAATAAAAATAAAAGAG
84060985 ATAATA
1 ATAATA
84060991 GGATTTAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
22 6 0.25
23 7 0.29
24 11 0.46
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (24 bp):
ATAATAAAAATAAAAATAAAAGAG
Found at i:84061910 original size:6 final size:6
Alignment explanation
Indices: 84061899--84062002 Score: 70
Period size: 6 Copynumber: 16.8 Consensus size: 6
84061889 TTATCAGACT
* * *
84061899 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * *
84061948 AGGTAA-C AGAATC AAAATC AGAATC GGTATC AGGTAA-C AGAATC AAAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
84061998 AGAAT
1 AGAAT
84062003 GTGAATGCAA
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 5 0.07
6 59 0.79
7 8 0.11
8 3 0.04
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:84061934 original size:25 final size:25
Alignment explanation
Indices: 84061904--84061999 Score: 106
Period size: 25 Copynumber: 3.8 Consensus size: 25
84061894 AGACTAGAAT
* *
84061904 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
84061929 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
84061954 CAGAATCAAAATCAGAATC-GGTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
84061978 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
84062000 AATGTGAATG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.10
25 51 0.85
26 3 0.05
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:84061937 original size:31 final size:29
Alignment explanation
Indices: 84061899--84062002 Score: 108
Period size: 31 Copynumber: 3.6 Consensus size: 29
84061889 TTATCAGACT
* * *
84061899 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATC-G-ATCAGGTAAC
*
84061930 AGAATCAGAATCAG--T--ATCAGGTAAC
1 AGAATCAAAATCAGAATCGATCAGGTAAC
84061955 AGAATCAAAATCAGAATCGGTATCAGGTAAC
1 AGAATCAAAATCAGAATC-G-ATCAGGTAAC
84061986 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
84062003 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
25 21 0.33
27 1 0.02
29 1 0.02
31 41 0.64
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (29 bp):
AGAATCAAAATCAGAATCGATCAGGTAAC
Found at i:84062436 original size:27 final size:27
Alignment explanation
Indices: 84062406--84062628 Score: 293
Period size: 27 Copynumber: 8.3 Consensus size: 27
84062396 GGGGCAAAAT
* * * *
84062406 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84062433 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84062460 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
84062487 GGTCATTCTACCTTCCAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84062514 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84062541 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
84062568 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
84062595 AGTAATTCTACCCTACAAGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
84062622 GGTAATT
1 GGTAATT
84062629 TCACAAAGCG
Statistics
Matches: 170, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 170 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:84062647 original size:81 final size:79
Alignment explanation
Indices: 84062406--84062655 Score: 218
Period size: 81 Copynumber: 3.1 Consensus size: 79
84062396 GGGGCAAAAT
* * * * *
84062406 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTC-A-
** *
84062471 CCTA-CAAGGGTATTTC
64 CAAAGCGA-GGTATTTC
* * * * * *
84062487 GGTCATTCTACCTTCCAGGGGTATTTTGGTAATTCTACCTTATAGGGGTATTTCGGTTATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG-TATT-T-C
* *
84062552 CCTACAG-G-GGTATTTC
63 AC-AAAGCGAGGTATTTC
* * *
84062568 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGATATTTCGGTAATTTCAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT-ATTTCAC
*
84062633 AAAGCGAGGATATTTG
65 AAAGCGAGG-TATTTC
84062649 GGTAATT
1 GGTAATT
84062656 TTATAAATTG
Statistics
Matches: 133, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
78 3 0.02
79 3 0.02
80 4 0.03
81 115 0.86
82 5 0.04
83 2 0.02
84 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.36
Consensus pattern (79 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCACA
AAGCGAGGTATTTC
Found at i:84066323 original size:40 final size:39
Alignment explanation
Indices: 84066279--84066380 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 39
84066269 TACCTCGATC
*
84066279 TCGCACACTATGTGCCATATATAGCCGAAGCTATGCCGAA
1 TCGCACACTA-GTGCCATATATAACCGAAGCTATGCCGAA
*
84066319 TCGCACACTGAGTGCCATATATAACCGAAGCTATGTCGAA
1 TCGCACACT-AGTGCCATATATAACCGAAGCTATGCCGAA
84066359 TCGCACACTAGGTGCCACTATA
1 TCGCACACTA-GTGCCA-TATA
84066381 GTTGATTTGT
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
39 1 0.02
40 51 0.89
41 5 0.09
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (39 bp):
TCGCACACTAGTGCCATATATAACCGAAGCTATGCCGAA
Found at i:84071370 original size:11 final size:12
Alignment explanation
Indices: 84071343--84071375 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
84071333 CGGGCTTATA
84071343 ATACATTTAATC
1 ATACATTTAATC
*
84071355 ATACATTTCA-C
1 ATACATTTAATC
84071366 ATACATTTAA
1 ATACATTTAA
84071376 ACCAATTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (12 bp):
ATACATTTAATC
Found at i:84075249 original size:18 final size:19
Alignment explanation
Indices: 84075226--84075261 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
84075216 AACTTGGCAC
*
84075226 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
84075244 CATAATTCAATTAATTTA
1 CATAATTCAATTAATTTA
84075262 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:84075591 original size:30 final size:30
Alignment explanation
Indices: 84075557--84075617 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84075547 TCCTTAACTC
84075557 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
84075587 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
84075617 A
1 A
84075618 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:84081150 original size:40 final size:40
Alignment explanation
Indices: 84081021--84081154 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
84081011 CTGTCTCAAA
* * * *
84081021 TCGCACACTAAGTGCAATATATAGTAGAATCTATCTCGAT
1 TCGCACACTAAGTGCCATATATAGCAGAAGCTATGTCGAT
* * *
84081061 CTCGCACACTAAGTGCCATTTATAGCAGTAGCTATGTCGAA
1 -TCGCACACTAAGTGCCATATATAGCAGAAGCTATGTCGAT
* * * *
84081102 TCGAACACTAAATGCCATATATAGCCGAAGCTATGTTGAT
1 TCGCACACTAAGTGCCATATATAGCAGAAGCTATGTCGAT
*
84081142 TAGCACACTAAGT
1 TCGCACACTAAGT
84081155 ACCACTTATA
Statistics
Matches: 76, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
40 43 0.57
41 33 0.43
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCAGAAGCTATGTCGAT
Found at i:84098671 original size:30 final size:31
Alignment explanation
Indices: 84098589--84098671 Score: 107
Period size: 30 Copynumber: 2.7 Consensus size: 31
84098579 TCAATCTCAA
84098589 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
84098619 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* * *
84098649 CATATCATTGGGCTGAAACCTTT
1 CATATCACTGGGCCGAAGCCTTT
84098672 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 24 0.52
31 22 0.48
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:84098937 original size:24 final size:23
Alignment explanation
Indices: 84098879--84098937 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 23
84098869 TTAGAGGCCT
*
84098879 AGCCTCTTTTAATAACTAGGGCAA
1 AGCC-CTTTTGATAACTAGGGCAA
84098903 AGCCCTTTTTGATAAACTAGGGCAA
1 AGCCC-TTTTGAT-AACTAGGGCAA
84098928 AGCCCTTTTG
1 AGCCCTTTTG
84098938 CACTTCCTCC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 1 0.03
24 15 0.47
25 16 0.50
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (23 bp):
AGCCCTTTTGATAACTAGGGCAA
Found at i:84099000 original size:11 final size:11
Alignment explanation
Indices: 84098984--84099032 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
84098974 TATATGAATT
84098984 TATCATGTGCA
1 TATCATGTGCA
*
84098995 TATCA--TACA
1 TATCATGTGCA
84099004 TATCATGTGCA
1 TATCATGTGCA
84099015 TATCATGT-CA
1 TATCATGTGCA
*
84099025 AATCATGT
1 TATCATGT
84099033 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:84103465 original size:30 final size:31
Alignment explanation
Indices: 84103385--84103467 Score: 107
Period size: 30 Copynumber: 2.7 Consensus size: 31
84103375 TCAATCTCAA
84103385 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* * * *
84103415 CATGTCACTAGGCTGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
*
84103445 CATATCATTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
84103468 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 24 0.55
31 20 0.45
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:84103706 original size:23 final size:23
Alignment explanation
Indices: 84103661--84103730 Score: 86
Period size: 24 Copynumber: 3.0 Consensus size: 23
84103651 GCTTTATCAT
** *
84103661 ATAACTGGAGGCCTAGCCTTTTTA
1 ATAACTGG-GGCAAAGCCCTTTTA
*
84103685 ATAACTGGGGCAAAGCCCTTTTG
1 ATAACTGGGGCAAAGCCCTTTTA
84103708 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCCTTTT
84103731 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.32
24 28 0.68
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:84103794 original size:11 final size:11
Alignment explanation
Indices: 84103778--84103826 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
84103768 TATATGAATT
84103778 TATCATGTGCA
1 TATCATGTGCA
*
84103789 TATCA--TACA
1 TATCATGTGCA
84103798 TATCATGTGCA
1 TATCATGTGCA
84103809 TATCATGT-CA
1 TATCATGTGCA
*
84103819 AATCATGT
1 TATCATGT
84103827 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:84107358 original size:46 final size:46
Alignment explanation
Indices: 84107291--84107507 Score: 301
Period size: 46 Copynumber: 4.7 Consensus size: 46
84107281 TGGCAACTTG
**
84107291 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGGTATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* *
84107337 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
84107383 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** *
84107429 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* * * *
84107475 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
84107508 TCACGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:84107486 original size:138 final size:130
Alignment explanation
Indices: 84107242--84107507 Score: 354
Period size: 138 Copynumber: 2.0 Consensus size: 130
84107232 AGTGTGCTCT
* *
84107242 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGTGAGTAAGACCATGGT
* ** * * *
84107307 TGAAAGATACCATGGCAACCTGGTATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
84107372 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG---TG---AG--TAAG
84107437 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACAC
58 ACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACAC
*
84107501 TATGGCA
122 CATGGCA
84107508 TCACGTCAAA
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
130 47 0.40
133 2 0.02
136 1 0.01
137 1 0.01
138 66 0.56
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGTGAGTAAGACCATGGT
TGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:84107813 original size:23 final size:25
Alignment explanation
Indices: 84107768--84107814 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
84107758 AATAAATATA
*
84107768 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
84107793 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
84107815 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:84112853 original size:39 final size:39
Alignment explanation
Indices: 84112819--84113558 Score: 1014
Period size: 39 Copynumber: 18.9 Consensus size: 39
84112809 AGATATAGTA
* * * * *
84112819 CCAGTACGAAGCCTGCGGACCTTAAGTCTGGATATAGTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
84112858 CCAGTACGAAGCCTGCGGATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * *
84112897 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
84112937 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * *
84112976 CCAGCACGAAGCTTGCGGACCTTAAGTCCGGATATAGTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
84113015 CCAGTACGAAGCCTGCGGATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * *
84113054 CCAGCATGAAGCCTGCGGGTCTTTAA-TCCCGGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGT-CCGGATACAATT
* **
84113094 CCAGCACGAAGCCTGTGGACCTTAAGTCTTGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
84113133 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * *
84113172 CCAGTACGAAGCCTGAGGATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * *
84113211 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
* **
84113251 CCAGCACGAAGCCTGTGGACCTTAAGTCTTGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
84113290 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * *
84113329 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
84113368 CCAGTACGAAGCCTGCGGATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * *
84113407 CCAACACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
* *
84113447 CCAGCATGAAGCCTGCGAACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
*
84113486 CCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
84113525 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
84113559 TACATCAAAT
Statistics
Matches: 611, Mismatches: 84, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
39 477 0.78
40 134 0.22
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
Found at i:84113087 original size:157 final size:157
Alignment explanation
Indices: 84112819--84113542 Score: 1108
Period size: 157 Copynumber: 4.6 Consensus size: 157
84112809 AGATATAGTA
* * *
84112819 CCAGTACGAAGCCTGCGGACCTTAAGTCTGGATATAGTACCAGTACGAAGCCTGCGGATCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGATCTTAAG
84112884 TCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGC
66 TCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGC
84112949 CTGCGGACCTTAAGTCCGGATACAATT
131 CTGCGGACCTTAAGTCCGGATACAATT
* *
84112976 CCAGCACGAAGCTTGCGGACCTTAAGTCCGGATATAGTACCAGTACGAAGCCTGCGGATCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGATCTTAAG
* *
84113041 TCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAATCCCGGATACAATTCCAGCACGAAGC
66 TCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGC
* **
84113106 CTGTGGACCTTAAGTCTTGATACAATT
131 CTGCGGACCTTAAGTCCGGATACAATT
*
84113133 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGAGGATCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGATCTTAAG
*
84113198 TCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGC
66 TCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGC
* **
84113263 CTGTGGACCTTAAGTCTTGATACAATT
131 CTGCGGACCTTAAGTCCGGATACAATT
* * * *
84113290 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGATCTTAAG
* * * * * * *
84113355 TCCGGATATAGTACCAGTACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAACACGAAGC
66 TCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGC
* * *
84113419 CTGCGGGTCTTTAAGCCCGGATACAATT
131 CTGC-GGACCTTAAGTCCGGATACAATT
* * * * * * *
84113447 CCAGCATGAAGCCTGCGAACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCAGACCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGATCTTAAG
84113512 TCCGGATACAATTCCAGCACGAAGCCTGCGG
66 TCCGGATACAATTCCAGCACGAAGCCTGCGG
84113543 ACCTTAAGTC
Statistics
Matches: 526, Mismatches: 40, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
156 30 0.06
157 496 0.94
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (157 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGATCTTAAG
TCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGC
CTGCGGACCTTAAGTCCGGATACAATT
Found at i:84113144 original size:196 final size:197
Alignment explanation
Indices: 84112817--84113560 Score: 1050
Period size: 196 Copynumber: 3.8 Consensus size: 197
84112807 CCAGATATAG
* * * * * * * * *
84112817 TACCAGTACGAAGCCTGCGGA-CCTTAAGTCTGGATATAGTACCAGTACGAAGCCTGCGG-ATCT
1 TACCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGAACCT
* * *
84112880 TAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
66 TAAGTCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
84112945 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATA
130 AAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGACCTTAAGTCCGGATA
* *
84113010 TAG
195 CAA
* * * ** *
84113013 TACCAGTACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTT
1 TACCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGAACCT
* **
84113077 TAA-TCCCGGATACAATTCCAGCACGAAGCCTGTGGACCTTAAGTCTTGATACAATTCCAGCACG
66 TAAGT-CCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
84113141 AAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGAGGATCTTAAGTCCGGATA
130 AAGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGACCTTAAGTCCGGATA
84113206 CAA
195 CAA
* * * *
84113209 TTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGTGG-ACCT
1 TACCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGAACCT
**
84113273 TAAGTCTTGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGA
66 TAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGA
* *
84113338 AGCCTGCGGACCTTAAGTCCGGATATAGTACCAGTACGAAGCCTGCGGATCTTAAGTCCGGATAC
131 AGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGACCTTAAGTCCGGATAC
84113403 AA
196 AA
* * * *
84113405 TTCCAACACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGC-GAACCT
1 TACCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGAACCT
*
84113469 TAAGTCCGGATACAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACGA
66 TAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGA
84113534 AGCCTGCGGACCTTAAGTCCGGATATA
131 AGCCTGCGGACCTTAAGTCCGGATATA
84113561 CATCAAATAT
Statistics
Matches: 496, Mismatches: 46, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
195 1 0.00
196 430 0.87
197 65 0.13
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (197 bp):
TACCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGAACCT
TAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGA
AGCCTGCGGACCTTAAGTCCGGATATAGTTCCAGTACGAAGCCTGCGGACCTTAAGTCCGGATAC
AA
Found at i:84117432 original size:28 final size:28
Alignment explanation
Indices: 84117400--84117494 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 28
84117390 GATAATGTAA
* *
84117400 CAGAGTCACCAGATATAAATA-ATCGTGG
1 CAGAGCCACCAGATACAAATATAT-GTGG
*
84117428 CAGAGCCACCAGA-ACAGATATATGTGG
1 CAGAGCCACCAGATACAAATATATGTGG
* *
84117455 CAGAGCCACCAGAT-CAGATAATTTGTGG
1 CAGAGCCACCAGATACAAAT-ATATGTGG
*
84117483 CATAGCCACCAG
1 CAGAGCCACCAG
84117495 GACGCTTCCT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 27 0.46
28 32 0.54
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (28 bp):
CAGAGCCACCAGATACAAATATATGTGG
Found at i:84117460 original size:27 final size:26
Alignment explanation
Indices: 84117382--84117494 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
84117372 AGCATGGCTG
** *
84117382 CCAGAACAGATAATGTAACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
84117408 CCAGATATAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
84117436 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
84117463 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
84117491 CCAG
1 CCAG
84117495 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 6 0.08
27 35 0.48
28 32 0.44
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:84117467 original size:55 final size:54
Alignment explanation
Indices: 84117382--84117494 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 54
84117372 AGCATGGCTG
* *
84117382 CCAGAACAGATAATGTAACAGAGTCACCAGATATAAATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTAACAGAGCCACCAGAT-CAAATAATTCGTGGCAGAGCCA
** * * *
84117436 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTAACAGAGCCACCAGATCAAATAATTCGTGGCAGAGCCA
84117491 CCAG
1 CCAG
84117495 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 17 0.34
55 33 0.66
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTAACAGAGCCACCAGATCAAATAATTCGTGGCAGAGCCA
Found at i:84120248 original size:28 final size:28
Alignment explanation
Indices: 84120208--84120352 Score: 193
Period size: 28 Copynumber: 5.5 Consensus size: 28
84120198 TAAATTGTAC
*
84120208 AGCACTAAGTGTGTGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
84120236 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
84120264 AGCACTAAGTGTGCGAGTTTGATTA--T
1 AGCACTAAGTGTGCGAGTTTGATTATGT
84120290 -G---T-A--GTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84120311 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84120338 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84120353 GACTTAATAT
Statistics
Matches: 105, Mismatches: 3, Indels: 19
0.83 0.02 0.15
Matches are distributed among these distances:
19 15 0.14
21 2 0.02
22 2 0.02
25 2 0.02
26 2 0.02
27 23 0.22
28 59 0.56
ACGTcount: A:0.25, C:0.10, G:0.30, T:0.35
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:84120298 original size:19 final size:19
Alignment explanation
Indices: 84120274--84120312 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
84120264 AGCACTAAGT
84120274 GTGCGAGTTTGATTATGTA
1 GTGCGAGTTTGATTATGTA
84120293 GTGCGAGTTTGATTATGTA
1 GTGCGAGTTTGATTATGTA
84120312 G
1 G
84120313 CACTAAGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.33, T:0.41
Consensus pattern (19 bp):
GTGCGAGTTTGATTATGTA
Found at i:84120315 original size:47 final size:46
Alignment explanation
Indices: 84120246--84120335 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 46
84120236 AGCACTAAGT
84120246 GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTA
1 GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAG-TTGATTATGTA
84120293 GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT
1 GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT
84120336 ATAGCACTGA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 8 0.19
47 35 0.81
ACGTcount: A:0.23, C:0.09, G:0.30, T:0.38
Consensus pattern (46 bp):
GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATGTA
Found at i:84120331 original size:27 final size:28
Alignment explanation
Indices: 84120293--84120352 Score: 95
Period size: 27 Copynumber: 2.2 Consensus size: 28
84120283 TGATTATGTA
*
84120293 GTGCGAGTTTGATTATGTAGCACTAAGT
1 GTGCGAGTTTGATTATATAGCACTAAGT
*
84120321 GTGCGAG-TTGATTATATAGCACTGAGT
1 GTGCGAGTTTGATTATATAGCACTAAGT
84120348 GTGCG
1 GTGCG
84120353 GACTTAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 23 0.77
28 7 0.23
ACGTcount: A:0.23, C:0.12, G:0.32, T:0.33
Consensus pattern (28 bp):
GTGCGAGTTTGATTATATAGCACTAAGT
Found at i:84120363 original size:27 final size:27
Alignment explanation
Indices: 84120301--84120365 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
84120291 TAGTGCGAGT
* * *
84120301 TTGATTATGTAGCACTAAGTGTGCGAG
1 TTGAATATATAGCACTAAGTGTGCGAC
* *
84120328 TTGATTATATAGCACTGAGTGTGCGGAC
1 TTGAATATATAGCACTAAGTGTGC-GAC
84120356 TT-AATATATA
1 TTGAATATATA
84120366 CTTTTGAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (27 bp):
TTGAATATATAGCACTAAGTGTGCGAC
Found at i:84128297 original size:28 final size:28
Alignment explanation
Indices: 84128254--84128403 Score: 221
Period size: 28 Copynumber: 5.4 Consensus size: 28
84128244 TGAGATGGCG
* * * *
84128254 CTAAGTGTGCGGGTTTAATTGTACAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
84128282 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
84128310 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
84128338 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
84128366 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
84128393 CTGAGTGTGCG
1 CTAAGTGTGCG
84128404 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
27 23 0.20
28 90 0.80
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:84135841 original size:16 final size:17
Alignment explanation
Indices: 84135795--84135842 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
84135785 TTAACCAATT
**
84135795 ATTATAATTAATTAATTA
1 ATTA-AATTAATTTTTTA
84135813 ATTAAATTAATTTTTTA
1 ATTAAATTAATTTTTTA
84135830 ATTAAA-TAATTTT
1 ATTAAATTAATTTT
84135843 CTCATCCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.25
17 17 0.61
18 4 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTAAATTAATTTTTTA
Found at i:84147605 original size:28 final size:28
Alignment explanation
Indices: 84147573--84147700 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
84147563 ATAGTAAGTC
*
84147573 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
84147601 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
84147630 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
84147658 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
84147687 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84147701 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84147663 original size:57 final size:57
Alignment explanation
Indices: 84147572--84147700 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
84147562 TATAGTAAGT
*
84147572 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
84147629 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
84147686 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
84147701 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:84154666 original size:46 final size:47
Alignment explanation
Indices: 84154560--84154681 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
84154550 TGTCTTCGAC
* * *
84154560 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGATCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* * *
84154610 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCAATATATCTAAT
* *
84154656 ATGGACTTACATGGGTCATTTCTGTC
1 ATGGACTTACATGGATCATTCCTGTC
84154682 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:84161764 original size:30 final size:30
Alignment explanation
Indices: 84161730--84161790 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84161720 TACTTAACTC
84161730 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
84161760 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
84161790 A
1 A
84161791 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:84163920 original size:20 final size:20
Alignment explanation
Indices: 84163895--84163938 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
84163885 TATTTAATAC
84163895 CTTTAGCTATTAGAATTCAA
1 CTTTAGCTATTAGAATTCAA
*
84163915 CTTTAGTTATTAGAATTCAA
1 CTTTAGCTATTAGAATTCAA
84163935 CTTT
1 CTTT
84163939 TGCACTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (20 bp):
CTTTAGCTATTAGAATTCAA
Found at i:84170974 original size:24 final size:22
Alignment explanation
Indices: 84170943--84171014 Score: 67
Period size: 21 Copynumber: 3.2 Consensus size: 22
84170933 CTCACTGAGT
84170943 TGTGGTCTGAGTTCATGATATA
1 TGTGGTCTGAGTTCATGATATA
* * *
84170965 TGTGACGTCTAAATTCATTGA-GT-
1 TGTG--GTCTGAGTTCA-TGATATA
*
84170988 TGTGGTCTGAGTTCAAGATATA
1 TGTGGTCTGAGTTCATGATATA
84171010 TGTGG
1 TGTGG
84171015 CACATGTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
20 2 0.05
21 10 0.26
22 9 0.24
23 4 0.11
24 10 0.26
25 3 0.08
ACGTcount: A:0.24, C:0.10, G:0.28, T:0.39
Consensus pattern (22 bp):
TGTGGTCTGAGTTCATGATATA
Found at i:84172604 original size:92 final size:98
Alignment explanation
Indices: 84172397--84172618 Score: 255
Period size: 92 Copynumber: 2.3 Consensus size: 98
84172387 GCAAGTTGCT
* *
84172397 GATGCCATGTCCCGGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGCTATGCCACAAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCATCGAGGCCGATGCTATGCCACAAA
** *
84172462 CATGCTCTTACACTAGCTCTCGTATATTTGTGCC
66 CATGCTCTTACACTAGAACTCGTATATATGT-CC
*
84172496 GATGCCATGTCCCAGACATGGTCTTACATTGAC-A-CATC-TCGTA-GCCGATGC-ATGTCC-CA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCATCG-AGGCCGATGCTATG-CCACA
* * *
84172555 GACATG-TCTTACTCTAGAACTCGTCT-TAATGT-C
64 AACATGCTCTTACACTAGAACTCGTATAT-ATGTCC
*
84172588 GATGCCATGTCCCAGACATAGTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
84172619 GCTCTCATAA
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
92 30 0.28
93 1 0.01
94 19 0.17
95 10 0.09
96 13 0.12
97 5 0.05
98 1 0.01
99 30 0.28
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (98 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCATCGAGGCCGATGCTATGCCACAAA
CATGCTCTTACACTAGAACTCGTATATATGTCC
Found at i:84172653 original size:94 final size:94
Alignment explanation
Indices: 84172397--84172664 Score: 253
Period size: 94 Copynumber: 2.8 Consensus size: 94
84172387 GCAAGTTGCT
* * * *
84172397 GATGCCATGTCCCGGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGCTATG-CCACAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AT-GCGGCCGATGC-ATGTCC-CAG
** *
84172461 ACATGCTCTTACACTAGCTCTCGTATATTTGTGCC
62 ACATG-TCTTACACTAGAACTCGTATATATGT-CC
* * * *
84172496 GATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACATCT-CGTAGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGCG--GCCGATGCATGTCCCAGAC
* *
84172558 ATGTCTTACTCTAGAACTCGTCT-TAATGT-C
64 ATGTCTTACACTAGAACTCGTATAT-ATGTCC
* *
84172588 GATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGCGGCCTATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGCGGCCGATGCATGTCCCAGACA
84172653 TGT-TATACACTA
65 TGTCT-TACACTA
84172665 TCTCACACCA
Statistics
Matches: 140, Mismatches: 20, Indels: 23
0.77 0.11 0.13
Matches are distributed among these distances:
92 28 0.20
93 4 0.03
94 52 0.37
95 11 0.08
96 13 0.09
97 3 0.02
98 2 0.01
99 27 0.19
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGCGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGAACTCGTATATATGTCC
Found at i:84173057 original size:29 final size:31
Alignment explanation
Indices: 84173007--84173064 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
84172997 AAATTGACAT
*
84173007 CTTTGGTAAAATGACCATTTTT-CCCCTAGA
1 CTTTGGAAAAATGACCATTTTTACCCCTAGA
84173037 CTTTGGAAAAATGACC-TTTTTACCCCTA
1 CTTTGGAAAAATGACCATTTTTACCCCTA
84173065 TGCTCGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (31 bp):
CTTTGGAAAAATGACCATTTTTACCCCTAGA
Found at i:84173634 original size:51 final size:51
Alignment explanation
Indices: 84173558--84173660 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
84173548 TGCGATTTAG
84173558 TTCTTTTTCACAATTGGCCTAATAAACGCTAAAATTAATCCACCAAAATTT
1 TTCTTTTTCACAATTGGCCTAATAAACGCTAAAATTAATCCACCAAAATTT
84173609 TTCTTTTTCACAATTGGCCTAATAAACGCTAAAATTAATCCACCAAAATTT
1 TTCTTTTTCACAATTGGCCTAATAAACGCTAAAATTAATCCACCAAAATTT
84173660 T
1 T
84173661 CATGCACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.36
Consensus pattern (51 bp):
TTCTTTTTCACAATTGGCCTAATAAACGCTAAAATTAATCCACCAAAATTT
Found at i:84176283 original size:41 final size:40
Alignment explanation
Indices: 84176156--84176300 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
84176146 CTCGCACAAG
* * * * * *
84176156 GCCTTCAGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
84176196 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
84176236 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
84176277 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
84176301 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:84182815 original size:25 final size:27
Alignment explanation
Indices: 84182764--84182812 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
84182754 AAAGAAATAA
84182764 CTAAAATTGATAATTAAAAATAAAATT
1 CTAAAATTGATAATTAAAAATAAAATT
84182791 CTAAAA-T-ATAA-TAAAAATAAAA
1 CTAAAATTGATAATTAAAAATAAAA
84182813 ATTAGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 11 0.50
25 4 0.18
26 1 0.05
27 6 0.27
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (27 bp):
CTAAAATTGATAATTAAAAATAAAATT
Found at i:84200626 original size:40 final size:39
Alignment explanation
Indices: 84200542--84200726 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
84200532 TTGAATGATG
* * * *
84200542 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
84200582 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
84200622 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
84200661 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
84200702 -CCGGGCGATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
84200727 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84200678 original size:79 final size:81
Alignment explanation
Indices: 84200542--84200726 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
84200532 TTGAATGATG
* *
84200542 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
84200606 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
84200621 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
84200683 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* * *
84200701 ACCGGGCGATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84200727 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:84200748 original size:79 final size:79
Alignment explanation
Indices: 84200595--84200759 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
84200585 GGACTAAGAT
* * * **
84200595 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCGAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
84200660 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
84200674 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCGATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCGAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
84200737 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
84200753 CCGAAGG
1 CCGAAGG
84200760 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCGAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:84216103 original size:43 final size:43
Alignment explanation
Indices: 84216047--84216288 Score: 317
Period size: 43 Copynumber: 5.6 Consensus size: 43
84216037 CATATCGTAA
* * * * * *
84216047 ATGCCAACATCCCAGACGAGATCTTACATGTAATAACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
84216090 ATGCCAATGTCCCAGACGTGGTCTTATACATAATCACGTATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
84216133 ATGCCAACGTCCCAAACGTGGTCTTAGACGTAATCACATATC-
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
84216175 AGTGCCAATGTCCCAGACGTGGTCTTACA-GATAATCACATATCG
1 A-TGCCAACGTCCCAGACGTGGTCTTACACG-TAATCACATATCG
84216219 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
84216262 ATGCTAATGTCCCAGACGTGGTCTTAC
1 ATGCCAACGTCCCAGACGTGGTCTTAC
84216289 TCGCACACAT
Statistics
Matches: 174, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
42 2 0.01
43 170 0.98
44 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:84216192 original size:86 final size:86
Alignment explanation
Indices: 84216047--84216288 Score: 360
Period size: 86 Copynumber: 2.8 Consensus size: 86
84216037 CATATCGTAA
* * * * * *
84216047 ATGCCAACATCCCAGACGAGATCTTACATGTAATAACATATTGATGCCAATGTCCCAGACGTGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGT
* *
84216112 CTTATACATAATCACGTATCG
66 CTTACACATAATCACATATCG
* *
84216133 ATGCCAACGTCCCAAACGTGGTCTTAGACGTAATCACATATC-AGTGCCAATGTCCCAGACGTGG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGA-TGCCAATGTCCCAGACGTGG
*
84216197 TCTTACAGATAATCACATATCG
65 TCTTACACATAATCACATATCG
*
84216219 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCTAATGTCCCAGACGTGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGT
84216284 CTTAC
66 CTTAC
84216289 TCGCACACAT
Statistics
Matches: 140, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
85 1 0.01
86 138 0.99
87 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (86 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGT
CTTACACATAATCACATATCG
Found at i:84227243 original size:50 final size:49
Alignment explanation
Indices: 84227123--84227258 Score: 157
Period size: 50 Copynumber: 2.8 Consensus size: 49
84227113 AGCTATCTGG
* * * **
84227123 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAA
* * *
84227172 TACACGTAGTAGCTTGAACTTAGTACTACACACGTGACCTCACCA-TCTAA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAA
* *
84227222 TAGACGTAGTAGCCTGCACTTAGTACTACAGACGTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
84227259 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
49 32 0.44
50 37 0.51
51 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (49 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAA
Found at i:84227302 original size:101 final size:99
Alignment explanation
Indices: 84227129--84227315 Score: 234
Period size: 101 Copynumber: 1.9 Consensus size: 99
84227119 CTGGTACACA
* * * *
84227129 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCTTGAACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGAACTTA
*
84227194 GTACTACACACGTGACCTCACCATCTAATAGACG
66 GTACTACACACGCGACCTCACCATCTAATAGACG
* * * *
84227228 TAGTAGCCTGCACTTAGTACTACAGACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCT-ACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGA-A
*
84227291 CTTAGTACTACACATGCGACCTCAC
62 CTTAGTACTACACACGCGACCTCAC
84227316 AATAGATCAT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
98 4 0.05
99 29 0.39
100 1 0.01
101 40 0.54
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGAACTTA
GTACTACACACGCGACCTCACCATCTAATAGACG
Found at i:84229482 original size:15 final size:14
Alignment explanation
Indices: 84229458--84229496 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 14
84229448 TCCAAGATAG
84229458 AAAAACCCAGAATA
1 AAAAACCCAGAATA
84229472 AAAAACTCCAGAATA
1 AAAAAC-CCAGAATA
84229487 AAGAAACCCA
1 AA-AAACCCA
84229497 AGATACGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.26
15 13 0.57
16 4 0.17
ACGTcount: A:0.62, C:0.23, G:0.08, T:0.08
Consensus pattern (14 bp):
AAAAACCCAGAATA
Found at i:84233562 original size:49 final size:49
Alignment explanation
Indices: 84233493--84233976 Score: 727
Period size: 49 Copynumber: 10.1 Consensus size: 49
84233483 GAAATGATAG
84233493 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
84233542 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
84233589 TAAGGCCTAATGGTCGATGTGGTGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
84233638 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
84233685 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
84233734 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
84233781 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * *
84233830 CAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
84233877 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
84233926 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
84233973 TAAG
1 TAAG
84233977 TCCCGAAGGG
Statistics
Matches: 394, Mismatches: 33, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
47 184 0.47
48 1 0.00
49 209 0.53
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:84233657 original size:96 final size:96
Alignment explanation
Indices: 84233493--84233976 Score: 815
Period size: 96 Copynumber: 5.0 Consensus size: 96
84233483 GAAATGATAG
*
84233493 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
84233558 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* *
84233589 TAAGGCCTAATGGTCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
84233654 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
84233685 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
84233750 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
84233781 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
84233846 ACGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
84233877 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
* * *
84233942 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
84233973 TAAG
1 TAAG
84233977 TCCCGAAGGG
Statistics
Matches: 375, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 375 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:84236979 original size:49 final size:50
Alignment explanation
Indices: 84236903--84237100 Score: 177
Period size: 50 Copynumber: 4.0 Consensus size: 50
84236893 AGCCAAAGCT
* *
84236903 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACAT-TCGA-C-CAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGT-GACCTCAAC
* * **
84236951 AGTCTGGTACACGTAGTAGCCTGAACTTAATACTACACATGTGACCTCGCC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCAAC
** * * * * **
84237002 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACAGACGTGATCACAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCA-AC
* * * * *
84237053 TTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTCA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCA
84237101 CAATAGATCA
Statistics
Matches: 117, Mismatches: 28, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
48 1 0.01
49 36 0.31
50 40 0.34
51 40 0.34
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCAAC
Found at i:84240504 original size:98 final size:93
Alignment explanation
Indices: 84240341--84240515 Score: 228
Period size: 98 Copynumber: 1.8 Consensus size: 93
84240331 AAGTAAGCCA
* * * *
84240341 ATGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAGTGTAAAACCATTTCTGGGAC
1 ATGTAAGACATGTCTAGGACATGCATCGGCTACAAGATGTGCCAGTGTAAAACCATTCCTGGGAC
84240406 ATGGCATCAGCACGAATATGCGAGAGCT
66 ATGGCATCAGCACGAATATGCGAGAGCT
*
84240434 ATGTAAGACCATGTCTAGGACATGGCATCGGCCT-CAATGATGATAGCCAGTGTAAGACCATATC
1 ATGTAAGA-CATGTCTAGGACAT-GCATCGG-CTACAA-GATG-T-GCCAGTGTAAAACCAT-TC
84240498 CT-GGACATGGCATCAGCA
59 CTGGGACATGGCATCAGCA
84240516 ACTGGCCCCA
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
93 8 0.11
94 13 0.19
95 9 0.13
96 6 0.09
97 1 0.01
98 30 0.43
99 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (93 bp):
ATGTAAGACATGTCTAGGACATGCATCGGCTACAAGATGTGCCAGTGTAAAACCATTCCTGGGAC
ATGGCATCAGCACGAATATGCGAGAGCT
Found at i:84250270 original size:25 final size:25
Alignment explanation
Indices: 84250242--84250298 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
84250232 TTTGTGCATG
84250242 TATGCTCA-TACGAGCTGT-GAATCGA
1 TATGCTCACT-CGAGCTGTAG-ATCGA
*
84250267 TATGCTCACTCGAGCTGTAGATCGG
1 TATGCTCACTCGAGCTGTAGATCGA
84250292 TATGCTC
1 TATGCTC
84250299 TCACGACCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 27 0.93
26 2 0.07
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (25 bp):
TATGCTCACTCGAGCTGTAGATCGA
Found at i:84256974 original size:47 final size:47
Alignment explanation
Indices: 84256920--84257345 Score: 665
Period size: 47 Copynumber: 9.1 Consensus size: 47
84256910 TTAGGATTTT
** * * * *
84256920 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
84256967 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
84257014 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
84257061 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
84257108 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
84257155 ATGTGATGAATGTGAAGATG-AGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCA-TATGTGTGATAAGGCCGAATGGCCA
*
84257202 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
84257249 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
84257296 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
84257343 ATG
1 ATG
84257346 CGAAATGTGT
Statistics
Matches: 357, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 357 1.00
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:84257455 original size:46 final size:46
Alignment explanation
Indices: 84257319--84257455 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
84257309 GAACATGTAT
* *
84257319 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
84257365 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
84257411 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
84257456 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:84257668 original size:37 final size:37
Alignment explanation
Indices: 84257638--84257748 Score: 195
Period size: 37 Copynumber: 3.0 Consensus size: 37
84257628 GTGGTGACTA
84257638 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
*
84257675 TGTCCGGGTAAAACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
* *
84257712 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
84257749 CATCTGAGCT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
Found at i:84261324 original size:27 final size:27
Alignment explanation
Indices: 84261290--84261488 Score: 247
Period size: 27 Copynumber: 7.4 Consensus size: 27
84261280 TGGATAAGTT
*
84261290 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
84261317 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** * *
84261344 GTAGAATTATTGAAACACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
84261371 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
84261398 ATAGAATTACCAAAATA-ACCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
84261424 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
84261451 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
84261478 GTAAAATTACC
1 GTAGAATTACC
84261489 ATTTTGCCCT
Statistics
Matches: 146, Mismatches: 25, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 23 0.16
27 123 0.84
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:84261480 original size:107 final size:108
Alignment explanation
Indices: 84261291--84261488 Score: 290
Period size: 107 Copynumber: 1.8 Consensus size: 108
84261281 GGATAAGTTG
* * * *
84261291 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATTG
1 TAGAATTACCAAAATACACCTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCG
*
84261356 AAACACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGA
66 AAACACCCCTATAGGGTAAAATTACCGAAATACCCCTGTAGGA
*
84261399 TAGAATTACCAAAATA-ACCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCG
1 TAGAATTACCAAAATACACCTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCG
* * * * *
84261463 AGATACCCTTGTGGGGTAAAATTACC
66 AAACACCCCTATAGGGTAAAATTACC
84261489 ATTTTGCCCT
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
107 64 0.81
108 15 0.19
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (108 bp):
TAGAATTACCAAAATACACCTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCG
AAACACCCCTATAGGGTAAAATTACCGAAATACCCCTGTAGGA
Done.