Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 253 of 344
Found at i:84261878 original size:8 final size:8
Alignment explanation
Indices: 84261862--84261893 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
84261852 ATGGGCAGAA
84261862 AACGGGCC
1 AACGGGCC
*
84261870 AATGGGCC
1 AACGGGCC
84261878 AACGGGCC
1 AACGGGCC
84261886 AACGGGCC
1 AACGGGCC
84261894 CACTTTGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.25, C:0.34, G:0.38, T:0.03
Consensus pattern (8 bp):
AACGGGCC
Found at i:84266283 original size:27 final size:27
Alignment explanation
Indices: 84266249--84266447 Score: 245
Period size: 27 Copynumber: 7.4 Consensus size: 27
84266239 TGGATAAGTT
* *
84266249 GTAGAATTACTGAAATACCCCTCTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
84266276 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
84266303 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
84266330 GTAAAATTACTGAAATACCTCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
84266357 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
84266384 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * * *
84266411 GTAGAATTATTGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
84266438 GTAAAATTAC
1 GTAGAATTAC
84266448 CATTTTGCCC
Statistics
Matches: 146, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:84267246 original size:27 final size:26
Alignment explanation
Indices: 84267194--84267253 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
84267184 ATATATATAT
*
84267194 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
84267220 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
84267247 ATATCTG
1 ATATCTG
84267254 GTAGTCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:84282596 original size:39 final size:40
Alignment explanation
Indices: 84282495--84282715 Score: 246
Period size: 39 Copynumber: 5.7 Consensus size: 40
84282485 TTGAATGATG
* *
84282495 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
84282534 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
84282575 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84282613 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84282651 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-TTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84282689 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
84282716 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 10, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
37 25 0.15
38 22 0.14
39 54 0.33
40 48 0.30
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:84282712 original size:116 final size:117
Alignment explanation
Indices: 84282495--84282715 Score: 281
Period size: 116 Copynumber: 1.9 Consensus size: 117
84282485 TTGAATGATG
*
84282495 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
84282560 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
65 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
* * * **
84282613 TCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
* *
84282675 TGTGCGA-TTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG
64 TGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTG
84282716 AACGAGGAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
114 2 0.02
115 14 0.16
116 56 0.62
117 7 0.08
118 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (117 bp):
TCCGGGCTAAGCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:84290752 original size:40 final size:40
Alignment explanation
Indices: 84290481--84290738 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
84290471 ATGTCTGGGC
* * * * **
84290481 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGT
* * *
84290521 TAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGC
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
*
84290561 TAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
84290600 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
84290640 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
*
84290680 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGT
*
84290720 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
84290739 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
39 34 0.17
40 154 0.77
41 11 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
Found at i:84290756 original size:120 final size:118
Alignment explanation
Indices: 84290477--84290770 Score: 335
Period size: 119 Copynumber: 2.5 Consensus size: 118
84290467 AATGATGTCT
** * * * *
84290477 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCATTTG
*
84290540 TGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCC
63 TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCC
* ** * *
84290596 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGTG
* * *
84290661 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-C
65 CGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCC
* * *
84290716 GGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAG
1 GGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAG
84290771 TTACGTGATT
Statistics
Matches: 150, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
118 1 0.01
119 79 0.53
120 67 0.45
121 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (118 bp):
GGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTGC
GAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCC
Found at i:84293057 original size:22 final size:22
Alignment explanation
Indices: 84293010--84293082 Score: 85
Period size: 22 Copynumber: 3.2 Consensus size: 22
84293000 GATAACAGTG
*
84293010 AGCTCGATTGAGCTGAAACCGGGA
1 AGCTCTATTGAGCT-AAA-CGGGA
84293034 AGCTCTATTGAGCTAAACGGGA
1 AGCTCTATTGAGCTAAACGGGA
* *
84293056 AGCTCT-TTCGAGCTGAACAGGA
1 AGCTCTATT-GAGCTAAACGGGA
84293078 AGCTC
1 AGCTC
84293083 ATACGAGCTA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
21 2 0.04
22 27 0.60
23 3 0.07
24 13 0.29
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.21
Consensus pattern (22 bp):
AGCTCTATTGAGCTAAACGGGA
Found at i:84293089 original size:22 final size:22
Alignment explanation
Indices: 84293043--84293092 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
84293033 AAGCTCTATT
* * *
84293043 GAGCTAAACGGGAAGCTCTTTC
1 GAGCTAAACAGGAAGCTCATAC
*
84293065 GAGCTGAACAGGAAGCTCATAC
1 GAGCTAAACAGGAAGCTCATAC
84293087 GAGCTA
1 GAGCTA
84293093 TGGTGAGTCC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.18
Consensus pattern (22 bp):
GAGCTAAACAGGAAGCTCATAC
Found at i:84298230 original size:93 final size:93
Alignment explanation
Indices: 84298118--84298289 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
84298108 CGCCCATAAG
*
84298118 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCACATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAGTGAACTCGGACTCAACTC
84298182 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
84298211 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
84298276 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
84298290 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:84298284 original size:46 final size:46
Alignment explanation
Indices: 84298111--84298286 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
84298101 TGTAACCCGC
* *
84298111 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACAT
*
84298157 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* *
84298207 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
84298250 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
84298287 TGCTCAATCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.54
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:84305730 original size:46 final size:46
Alignment explanation
Indices: 84305663--84305834 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
84305653 TGTAACCCGC
*
84305663 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
* * *
84305709 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCAT
* *
84305759 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCAT
*
84305802 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
84305835 GGGATGCTCA
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 57 0.54
47 26 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
Found at i:84305782 original size:93 final size:93
Alignment explanation
Indices: 84305670--84305841 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
84305660 CGCCCATAAG
*
84305670 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
84305734 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
84305763 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
84305828 ACGAGTTGGGATGC
66 ACGAGTTCGGATGC
84305842 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:84305857 original size:46 final size:46
Alignment explanation
Indices: 84305666--84305857 Score: 155
Period size: 46 Copynumber: 4.2 Consensus size: 46
84305656 AACCCGCCCA
* * * * *
84305666 TAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCATCATCC
84305711 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCC
* * *** *
84305760 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
*
84305804 ATAAGTGAACTCGGACTCAACTCAACGAGTTGGGATGCTCAATCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCC
84305852 T-AGTGA
1 TAAGTGA
84305858 CATGTCACTT
Statistics
Matches: 116, Mismatches: 18, Indels: 24
0.73 0.11 0.15
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 5 0.04
46 65 0.56
47 30 0.26
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
Found at i:84309017 original size:23 final size:23
Alignment explanation
Indices: 84308986--84309029 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
84308976 TGGATGGGCA
84308986 ACACACCCGTGTCCATGGCCCGC
1 ACACACCCGTGTCCATGGCCCGC
* *
84309009 ACACGCCCGTTTCCATGGCCC
1 ACACACCCGTGTCCATGGCCC
84309030 ATGTCCCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.16, C:0.48, G:0.20, T:0.16
Consensus pattern (23 bp):
ACACACCCGTGTCCATGGCCCGC
Found at i:84314283 original size:19 final size:19
Alignment explanation
Indices: 84314259--84314309 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
84314249 TGGACACAGG
84314259 GACACGCCCGTGTGCCCTC
1 GACACGCCCGTGTGCCCTC
84314278 GACACGCCCGTGTGCCCTC
1 GACACGCCCGTGTGCCCTC
84314297 GACACGCCCGTGT
1 GACACGCCCGTGT
84314310 CCTCAGGCCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.12, C:0.45, G:0.27, T:0.16
Consensus pattern (19 bp):
GACACGCCCGTGTGCCCTC
Found at i:84316190 original size:50 final size:48
Alignment explanation
Indices: 84316075--84316388 Score: 172
Period size: 50 Copynumber: 6.6 Consensus size: 48
84316065 GGTAAGGTGC
* *
84316075 CGATGCCATGTCCCGGACATGGTCTTACACTGGCTCACACATCAAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAAGT
* * * *
84316123 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCGTATATCGAGGAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCAC--ACATCAAAG-T
*
84316174 -GATGCCATGTCCCAGACATGGTCTTACACT-AGCT--CTCATC----T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCACACATCAAAGT
* * * * ** ** *
84316215 -GATGCCATTTCCTAGCCATGGTTTTACACT-AGCTCTTATCTATCAGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCACA-C-ATCAAAGT
* * * * * * *
84316264 CAATTCCATGTCCCAGCCATGGTCTTACACT-A-ACACATAT-TAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAAGT
* * * * *
84316309 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCACACA--TCAAAGT
*
84316359 CGATGCCATGTCCCAAACA-GGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
84316389 AGGTCTCATA
Statistics
Matches: 213, Mismatches: 35, Indels: 35
0.75 0.12 0.12
Matches are distributed among these distances:
41 31 0.15
44 1 0.00
45 34 0.16
46 5 0.02
47 5 0.02
48 38 0.18
49 13 0.06
50 85 0.40
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAAGT
Found at i:84316235 original size:41 final size:41
Alignment explanation
Indices: 84316173--84316348 Score: 138
Period size: 45 Copynumber: 4.0 Consensus size: 41
84316163 ATATCGAGGA
84316173 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
* * * *
84316214 TGATGCCATTTCCTAGCCATGGTTTTACACTAGCTCTTATCTATC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTC---TC-ATC
* * * *
84316259 AGTGCCAATTCCATGTCCCAGCCATGGTCTTACACTAACACAT-ATTAAGC
1 --TG---ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCA-T---C
*
84316309 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
84316349 ATCTCGAGGC
Statistics
Matches: 106, Mismatches: 15, Indels: 25
0.73 0.10 0.17
Matches are distributed among these distances:
41 32 0.30
44 4 0.04
45 34 0.32
46 1 0.01
47 3 0.03
48 3 0.03
50 29 0.27
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (41 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
Found at i:84337737 original size:29 final size:29
Alignment explanation
Indices: 84337695--84337752 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
84337685 CTTGGTGGAA
*
84337695 CATAGTTGGATCTCTTAGGTTTGATTGCT
1 CATAGTTGCATCTCTTAGGTTTGATTGCT
84337724 CATAGTTGCATCTCTTAGGTTTGATTGCT
1 CATAGTTGCATCTCTTAGGTTTGATTGCT
84337753 TATTAATCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.45
Consensus pattern (29 bp):
CATAGTTGCATCTCTTAGGTTTGATTGCT
Found at i:84341109 original size:38 final size:38
Alignment explanation
Indices: 84341053--84341127 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
84341043 GATGTGTATT
* * *
84341053 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
84341091 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
84341128 TCGGACCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:84342713 original size:119 final size:120
Alignment explanation
Indices: 84342529--84342753 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
84342519 GCTCCTCGTT
*
84342529 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
84342594 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
84342649 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
84342711 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
84342754 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84342753 original size:40 final size:40
Alignment explanation
Indices: 84342529--84342753 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
84342519 GCTCCTCGTT
* *
84342529 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
84342569 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
84342609 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
84342649 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
84342688 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
84342729 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84342754 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 120 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:84350627 original size:39 final size:40
Alignment explanation
Indices: 84350466--84350688 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
84350456 GCTCCTCGTT
* *
84350466 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
84350506 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
84350546 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
84350586 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
84350625 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
84350666 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCG
84350689 AACATCATTC
Statistics
Matches: 163, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 116 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84350650 original size:119 final size:120
Alignment explanation
Indices: 84350466--84350688 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
84350456 GCTCCTCGTT
**
84350466 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
84350531 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
84350586 CAAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
84350648 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCG
84350689 AACATCATTC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 62 0.70
120 24 0.27
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84352303 original size:43 final size:43
Alignment explanation
Indices: 84352241--84352381 Score: 246
Period size: 43 Copynumber: 3.3 Consensus size: 43
84352231 GGCTGTCACA
* * *
84352241 TGCCTAGTAGGCTTAGTGCCGATGATGTGTATTCGGGCCTTCG
1 TGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCG
*
84352284 TGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTTGGGCCTTCG
1 TGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCG
84352327 TGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCG
1 TGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCG
84352370 TGCCTAGCAGGC
1 TGCCTAGCAGGC
84352382 GTAATGCCGG
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 93 1.00
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
TGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCG
Found at i:84371388 original size:49 final size:47
Alignment explanation
Indices: 84371273--84371393 Score: 131
Period size: 49 Copynumber: 2.5 Consensus size: 47
84371263 TGCCGATGCC
* *
84371273 ATGTTCCAGATATGGTCTTACACTGACTCATCCATTAAGTCAATGCCA
1 ATGTCCCAGATATGGTCTTACACTGACTCATCCATCAAGTCAA-GCCA
* * *
84371321 A-GTCCCAGACATGGTCTTACACTGACT-ATCGAGATCGAGATCAA-CACA
1 ATGTCCCAGATATGGTCTTACACTGACTCATC--CATCAAG-TCAAGC-CA
84371369 ATGTCCCAGATATGGTCTTACACTG
1 ATGTCCCAGATATGGTCTTACACTG
84371394 GATTTCATCT
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
46 3 0.05
47 25 0.40
48 8 0.13
49 26 0.42
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (47 bp):
ATGTCCCAGATATGGTCTTACACTGACTCATCCATCAAGTCAAGCCA
Found at i:84377853 original size:39 final size:40
Alignment explanation
Indices: 84377649--84377869 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
84377639 TTGAATGCTG
* * * * * *
84377649 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
84377689 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
84377729 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
84377769 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
84377809 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
84377848 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
84377870 GTTGAACGAG
Statistics
Matches: 159, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.21
40 118 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:84377891 original size:79 final size:80
Alignment explanation
Indices: 84377724--84377906 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
84377714 GTGCGAGATA
** * *
84377724 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
84377789 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
84377804 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
84377868 CAGTT-GAACGAGGAG
66 CA-TTCGAACGAGGAG
* *
84377883 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
84377907 TACGTGATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 14 0.16
79 43 0.50
80 29 0.34
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:84385052 original size:39 final size:40
Alignment explanation
Indices: 84384848--84385068 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
84384838 TTGAATGCTG
* * * * * *
84384848 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
84384888 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
84384928 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
84384968 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
84385008 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
84385047 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
84385069 GTTGAACGAG
Statistics
Matches: 159, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.21
40 118 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:84385090 original size:79 final size:80
Alignment explanation
Indices: 84384923--84385105 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
84384913 GTGCGAGATA
** * *
84384923 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
84384988 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
84385003 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
84385067 CAGTT-GAACGAGGAG
66 CA-TTCGAACGAGGAG
* *
84385082 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
84385106 TACGTGATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 14 0.16
79 43 0.50
80 29 0.34
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:84387123 original size:17 final size:17
Alignment explanation
Indices: 84387082--84387123 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
84387072 TTTGAGTCCA
84387082 TTTATTTTCACTTTGTT
1 TTTATTTTCACTTTGTT
**
84387099 TTGCTTTTC-CTTTTGTT
1 TTTATTTTCAC-TTTGTT
84387116 TTTATTTT
1 TTTATTTT
84387124 AAAAGTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.74
Consensus pattern (17 bp):
TTTATTTTCACTTTGTT
Found at i:84407794 original size:11 final size:11
Alignment explanation
Indices: 84407778--84407806 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
84407768 TATAAAATTT
84407778 TTCTATTAAAA
1 TTCTATTAAAA
84407789 TTCTATTAAAA
1 TTCTATTAAAA
84407800 TTC-ATTA
1 TTCTATTA
84407807 TCAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTATTAAAA
Found at i:84412000 original size:18 final size:19
Alignment explanation
Indices: 84411977--84412018 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
84411967 GAGAAGAAGA
84411977 GGGAA-TTTGGGAGTGAGC
1 GGGAATTTTGGGAGTGAGC
84411995 GGGAATTTTTTGGGAGTGAGC
1 GGGAA--TTTTGGGAGTGAGC
84412016 GGG
1 GGG
84412019 TAAGCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
21 16 0.76
ACGTcount: A:0.19, C:0.05, G:0.50, T:0.26
Consensus pattern (19 bp):
GGGAATTTTGGGAGTGAGC
Found at i:84412320 original size:7 final size:7
Alignment explanation
Indices: 84412310--84412356 Score: 85
Period size: 7 Copynumber: 6.6 Consensus size: 7
84412300 TTTTTTTATT
84412310 TTTTAAA
1 TTTTAAA
84412317 TTTTAAA
1 TTTTAAA
84412324 TTTTAAA
1 TTTTAAA
84412331 TTTTAAA
1 TTTTAAA
84412338 TTTTAAA
1 TTTTAAA
84412345 TTTTAAAA
1 TTTT-AAA
84412353 TTTT
1 TTTT
84412357 TTTGAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
7 32 0.82
8 7 0.18
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TTTTAAA
Found at i:84412376 original size:9 final size:8
Alignment explanation
Indices: 84412309--84412383 Score: 68
Period size: 7 Copynumber: 9.2 Consensus size: 8
84412299 GTTTTTTTAT
84412309 TTTTTAAA
1 TTTTTAAA
84412317 -TTTTAAA
1 TTTTTAAA
84412324 -TTTTAAA
1 TTTTTAAA
84412331 -TTTTAAA
1 TTTTTAAA
84412338 -TTTTAAA
1 TTTTTAAA
*
84412345 TTTTAAAA
1 TTTTTAAA
84412353 TTTTTTTGAAGA
1 --TTTTT-AA-A
84412365 TTTTTATAA
1 TTTTTA-AA
84412374 TTTTTAAA
1 TTTTTAAA
84412382 TT
1 TT
84412384 ATCGTATAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
7 28 0.47
8 10 0.17
9 8 0.14
10 10 0.17
11 2 0.03
12 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (8 bp):
TTTTTAAA
Found at i:84413195 original size:18 final size:16
Alignment explanation
Indices: 84413172--84413213 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
84413162 TTTCTCTTAA
84413172 ATAATTTAAACTATATT
1 ATAATTTAAA-TATATT
*
84413189 CATAATTTTAATATATT
1 -ATAATTTAAATATATT
84413206 A-AATTTAA
1 ATAATTTAA
84413214 TATTATCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 6 0.27
16 1 0.05
17 6 0.27
18 9 0.41
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATTTAAATATATT
Found at i:84413293 original size:14 final size:14
Alignment explanation
Indices: 84413276--84413337 Score: 61
Period size: 14 Copynumber: 4.4 Consensus size: 14
84413266 ACTAATTAAT
84413276 CTAAACCCTAACCC
1 CTAAACCCTAACCC
* *
84413290 CTAACCCCTAACCT
1 CTAAACCCTAACCC
*
84413304 CTAAACCCTAAGCC
1 CTAAACCCTAACCC
* * * *
84413318 ATAAAACATAAACC
1 CTAAACCCTAACCC
84413332 CTAAAC
1 CTAAAC
84413338 TTCTACCCCT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.16
Consensus pattern (14 bp):
CTAAACCCTAACCC
Found at i:84413336 original size:7 final size:7
Alignment explanation
Indices: 84413276--84413337 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
84413266 ACTAATTAAT
84413276 CTAAACC
1 CTAAACC
*
84413283 CTAACCC
1 CTAAACC
*
84413290 CTAACCC
1 CTAAACC
84413297 CT-AACC
1 CTAAACC
84413303 TCTAAACC
1 -CTAAACC
*
84413311 CTAAGCC
1 CTAAACC
* *
84413318 ATAAAAC
1 CTAAACC
*
84413325 ATAAACC
1 CTAAACC
84413332 CTAAAC
1 CTAAAC
84413338 TTCTACCCCT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
6 3 0.07
7 38 0.84
8 4 0.09
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.16
Consensus pattern (7 bp):
CTAAACC
Found at i:84413647 original size:15 final size:15
Alignment explanation
Indices: 84413623--84413658 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
84413613 ACTACCCATG
* *
84413623 ACCATTAAACCTTAA
1 ACCATAAAACCCTAA
84413638 ACCATAAAACCCTAA
1 ACCATAAAACCCTAA
84413653 ACCATA
1 ACCATA
84413659 GACCTTAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (15 bp):
ACCATAAAACCCTAA
Found at i:84413847 original size:48 final size:47
Alignment explanation
Indices: 84413806--84413919 Score: 155
Period size: 48 Copynumber: 2.4 Consensus size: 47
84413796 TTTTTAGGGT
84413806 TTAGGGTTTTAGAGGTTATAGATTAGTGTTTAGTG-TTTTTTTAGGGT
1 TTAGGGTTTTAGAGGTTATAGATTAGTGTTTA-TGATTTTTTTAGGGT
84413853 TTAGGGGTTTTA-AGGGTTATAGATTAGTGTTTATGAATTTTTTT-GGGT
1 TTA-GGGTTTTAGA-GGTTATAGATTAGTGTTTATG-ATTTTTTTAGGGT
*
84413901 TTA-GGTTTTAGGGGTTATA
1 TTAGGGTTTTAGAGGTTATA
84413920 TGACTTTTTG
Statistics
Matches: 61, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
46 14 0.23
47 6 0.10
48 34 0.56
49 7 0.11
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (47 bp):
TTAGGGTTTTAGAGGTTATAGATTAGTGTTTATGATTTTTTTAGGGT
Found at i:84413975 original size:42 final size:41
Alignment explanation
Indices: 84413924--84414092 Score: 223
Period size: 41 Copynumber: 4.1 Consensus size: 41
84413914 GTTATATGAC
*
84413924 TTTTT-GCAGCGTTTTGAGAAAAAACGCCGCTATTGCTCTAT
1 TTTTTAGCAGCG-TTTGACAAAAAACGCCGCTATTGCTCTAT
*
84413965 TTTTTAGCAGCGTTTGACCAAAAACGCCGCTATTGCTCTAT
1 TTTTTAGCAGCGTTTGACAAAAAACGCCGCTATTGCTCTAT
* * * *
84414006 TTTTTAGCTGCGTCTGACCAAAAACGCCGCTATTGCTCTGT
1 TTTTTAGCAGCGTTTGACAAAAAACGCCGCTATTGCTCTAT
* * * *
84414047 TTTTTAGCTGCGTTTTACCAGAAAACGCTGCTATTGCTCTAT
1 TTTTTAGCAGCGTTTGA-CAAAAAACGCCGCTATTGCTCTAT
84414089 TTTT
1 TTTT
84414093 AGGGACGTTT
Statistics
Matches: 115, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
41 85 0.74
42 30 0.26
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (41 bp):
TTTTTAGCAGCGTTTGACAAAAAACGCCGCTATTGCTCTAT
Found at i:84414094 original size:41 final size:41
Alignment explanation
Indices: 84413943--84414092 Score: 246
Period size: 41 Copynumber: 3.6 Consensus size: 41
84413933 CGTTTTGAGA
*
84413943 AAAAACGCCGCTATTGCTCTATTTTTTAGCAGCGTTTGACC
1 AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTTTGACC
*
84413984 AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTCTGACC
1 AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTTTGACC
* *
84414025 AAAAACGCCGCTATTGCTCTGTTTTTTAGCTGCGTTTTACC
1 AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTTTGACC
*
84414066 AGAAAACGCTGCTATTGCTCTATTTTT
1 A-AAAACGCCGCTATTGCTCTATTTTT
84414093 AGGGACGTTT
Statistics
Matches: 101, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 78 0.77
42 23 0.23
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (41 bp):
AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTTTGACC
Found at i:84414504 original size:19 final size:20
Alignment explanation
Indices: 84414477--84414521 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
84414467 ATAAAGTACA
* *
84414477 TTCTCTATTGC-TTCTTATT
1 TTCTTTATTGCTTTCATATT
84414496 TTCTTTATTGCTTTCATATT
1 TTCTTTATTGCTTTCATATT
84414516 TTCTTT
1 TTCTTT
84414522 GTTCTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.11, C:0.18, G:0.04, T:0.67
Consensus pattern (20 bp):
TTCTTTATTGCTTTCATATT
Found at i:84417406 original size:28 final size:28
Alignment explanation
Indices: 84417382--84417466 Score: 125
Period size: 28 Copynumber: 3.0 Consensus size: 28
84417372 CTTATATATG
84417382 TGCAAAAATACAAACTTTGTAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
* * *
84417410 TTCAAAAATATAAACTTTGAAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
**
84417438 TGCAAAAATACAAAAGTTGTAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
84417466 T
1 T
84417467 TAAATTCATT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.29
Consensus pattern (28 bp):
TGCAAAAATACAAACTTTGTAATATAAA
Found at i:84419916 original size:48 final size:48
Alignment explanation
Indices: 84419787--84419918 Score: 142
Period size: 48 Copynumber: 2.8 Consensus size: 48
84419777 CATGATTAAT
*
84419787 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAC
1 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
* * * * * *
84419835 GAGATCACGTGTAAGACCATAT-TCGAGATATGGC-TTCGGCATTGTTAA
1 GAGATCTCGTGTAAGACCATGTCT-GGGACATGGCATT-GGCATCGATAA
* * *
84419883 GTGATTTCGTATAAGACCATGTCTGGGACATGGCAT
1 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCAT
84419919 CGAAATAAGG
Statistics
Matches: 66, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
47 3 0.05
48 61 0.92
49 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (48 bp):
GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
Found at i:84419964 original size:90 final size:90
Alignment explanation
Indices: 84419846--84420011 Score: 217
Period size: 90 Copynumber: 1.8 Consensus size: 90
84419836 AGATCACGTG
* * * * * * *
84419846 TAAGACCATATTCGAGATATGGCTTCGGCATTG-TTAAGTGATTTCGTATAAGACCATGTCTGGG
1 TAAGACCATATTCGAGACATGGCGTCGGCACTGATT-AGAGACTTCGTATAAGACCATATCTAGG
84419910 ACATGGCATCGAAATAAGGTGCCGTA
65 ACATGGCATCGAAATAAGGTGCCGTA
* * *
84419936 TAAGACCATGTTTGAGACATGGCGTCGGCACTGATTCGAGACTTCGTATAAGACCATATCTAGGA
1 TAAGACCATATTCGAGACATGGCGTCGGCACTGATTAGAGACTTCGTATAAGACCATATCTAGGA
*
84420001 TATGGCATCGA
66 CATGGCATCGA
84420012 TGTGTGGTCC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
90 62 0.97
91 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (90 bp):
TAAGACCATATTCGAGACATGGCGTCGGCACTGATTAGAGACTTCGTATAAGACCATATCTAGGA
CATGGCATCGAAATAAGGTGCCGTA
Found at i:84420030 original size:90 final size:90
Alignment explanation
Indices: 84419844--84420035 Score: 206
Period size: 90 Copynumber: 2.1 Consensus size: 90
84419834 CGAGATCACG
* * * * * * * *
84419844 TGTAAGACCATATTCGAGATATGGCTTCGGCATTGTTAAGTGATTTCGTATAAGACCATGTCTGG
1 TGTAAGACCATGTTCGAGACATGGCGTCGGCACTGTTAAGAGACTTCGTATAAGACCATATCTAG
* *
84419909 GACATGGCATCGAAATAAGGTGCCG
66 GACATGGCATCGAAATAAGGTCCCA
* * *
84419934 TATAAGACCATGTTTGAGACATGGCGTCGGCACTGATT-CGAGACTTCGTATAAGACCATATCTA
1 TGTAAGACCATGTTCGAGACATGGCGTCGGCACTG-TTAAGAGACTTCGTATAAGACCATATCTA
* ** **
84419998 GGATATGGCATCGATGTGTGGTCCCA
65 GGACATGGCATCGAAATAAGGTCCCA
84420024 TGTAAGACCATG
1 TGTAAGACCATG
84420036 CCTAGGACAT
Statistics
Matches: 82, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
90 80 0.98
91 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (90 bp):
TGTAAGACCATGTTCGAGACATGGCGTCGGCACTGTTAAGAGACTTCGTATAAGACCATATCTAG
GACATGGCATCGAAATAAGGTCCCA
Found at i:84433861 original size:42 final size:42
Alignment explanation
Indices: 84433750--84433911 Score: 216
Period size: 42 Copynumber: 3.8 Consensus size: 42
84433740 TACCGTACCA
* * * **
84433750 ATGCCATATCCCAGACATGGTCTTACATGTACTCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
84433792 ATGCCAATAGCCCAGCTATGGTCTTACATGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
84433835 ATGCCATATCCCAGGTATGGTCTTACATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
84433877 ATGCCATATCCCAGATATGGTCTTATATGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCT
84433912 TAGTAACCCT
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
42 71 0.67
43 35 0.33
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:84439561 original size:29 final size:30
Alignment explanation
Indices: 84439490--84439563 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
84439480 GTCATGAGAT
* *
84439490 TGGCACTAAGTGTACGGGTTTAAATTGTACA
1 TGGCACTAAGTGTGCGAGTTTAAA-TGTACA
84439521 --GCACTAAGTGTGCGAGTTTAAA-GTACA
1 TGGCACTAAGTGTGCGAGTTTAAATGTACA
84439548 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84439564 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGTTTAAATGTACA
Found at i:84440021 original size:174 final size:174
Alignment explanation
Indices: 84439521--84440022 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
84439511 AAATTGTACA
84439521 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
*
84439586 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTACGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
* *
84439651 TTTTGGACAGCAGAAAAGGTAAATGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
84439695 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
84439760 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
84439825 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
84439869 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
* * *
84439934 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
84439999 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
84440023 ACCTTGAGTT
Statistics
Matches: 320, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 320 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:84443022 original size:40 final size:40
Alignment explanation
Indices: 84442879--84443046 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
84442869 CTCGTTCAAG
* * *
84442879 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCAG-AC-AA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTC-GCACGAA
* *
84442918 TGCCTTCGGGACATAACCCGGATTCAACAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
*
84442958 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
* * * * *
84442998 TGCCTTTGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
*
84443038 GGCCTTCGG
1 TGCCTTCGG
84443047 ATCTTAGTCC
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 1 0.01
39 30 0.27
40 82 0.73
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
Found at i:84443108 original size:41 final size:41
Alignment explanation
Indices: 84443031--84443108 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
84443021 TTAGTATCTC
* * *
84443031 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
84443072 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
84443109 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:84456048 original size:27 final size:26
Alignment explanation
Indices: 84456015--84456191 Score: 138
Period size: 27 Copynumber: 6.5 Consensus size: 26
84456005 AAATTGTACA
84456015 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * * * *
84456042 GCCCTAAGTGTGTGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
84456069 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
84456096 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * *
84456124 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * * *
84456151 GCACTTAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
84456178 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
84456192 GCTCAATATA
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:84456137 original size:55 final size:54
Alignment explanation
Indices: 84456069--84456191 Score: 147
Period size: 55 Copynumber: 2.3 Consensus size: 54
84456059 TGAATATGAT
* * *
84456069 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGT-TGACTATATA
* ** * * *
84456124 GCACTAAGTGTGCGATTTGATTACGTAGCACTTAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATA
*
84456178 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
84456192 GCTCAATATA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
54 21 0.36
55 37 0.64
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATA
Found at i:84456155 original size:82 final size:81
Alignment explanation
Indices: 84456015--84456170 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
84456005 AAATTGTACA
* * * * *
84456015 GCACTAAGTGTGCGATTCGACTATGTTGCCCTAAGTGTGTGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
84456080 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
84456096 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTTAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
84456160 GTGCGAGTTGA
64 GTGCGAATTGA
84456171 TTATATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84456182 original size:82 final size:81
Alignment explanation
Indices: 84456011--84456191 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
84456001 GATTAAATTG
* * * * *
84456011 TACAGCACTAAGTGTGCGATTCGACTATGTTGCCCTAAGTGTGTGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84456076 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84456092 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
84456156 TAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84456174 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84456192 GCTCAATATA
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 20 0.25
82 60 0.75
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84464058 original size:27 final size:26
Alignment explanation
Indices: 84464027--84464204 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
84464017 TAAATTGTAC
84464027 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
84464054 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
84464080 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
84464108 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
84464136 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
84464163 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
84464190 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84464205 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:84464143 original size:82 final size:81
Alignment explanation
Indices: 84464028--84464183 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
84464018 AAATTGTACA
* * *
84464028 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
84464092 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
84464109 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
84464174 TGCGAGTTGA
65 TGCGAATTGA
84464184 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84464195 original size:82 final size:81
Alignment explanation
Indices: 84464024--84464204 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
84464014 GATTAAATTG
* * *
84464024 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84464089 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84464105 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84464169 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84464187 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84464205 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84464215 original size:27 final size:27
Alignment explanation
Indices: 84464109--84464215 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
84464099 TGACCATGCG
* * *
84464109 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
84464137 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
84464164 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
84464191 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
84464216 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:84467797 original size:39 final size:39
Alignment explanation
Indices: 84467708--84467969 Score: 368
Period size: 39 Copynumber: 6.7 Consensus size: 39
84467698 TAATTGAGGA
* * * *
84467708 TTATAACCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGAT-
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG-G-TG
* *
84467746 TTATATCAGGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
84467785 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
84467824 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
84467863 TTATATTCGGGCTAAGTCCCGAAGGTATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
84467902 TTATATCCGGGCTAAGTCCTGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
84467941 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
84467970 TGTGTTGGAA
Statistics
Matches: 201, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
38 25 0.12
39 174 0.87
40 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:84472966 original size:42 final size:41
Alignment explanation
Indices: 84472854--84472966 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 41
84472844 TACCATACCA
* ** **
84472854 ATGCCATATCCCAGATATGCTCTTACATGTAATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CAAATCTCATATCG
* * *
84472896 ATGCCAATAGCCCA-ACTATTGTCTTACACAAAGTCTCATATTG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACAAA-TCTCATATCG
84472939 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
84472967 GTAATCTTAG
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
42 27 0.47
43 30 0.53
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACAAATCTCATATCG
Found at i:84473333 original size:54 final size:54
Alignment explanation
Indices: 84473251--84473356 Score: 185
Period size: 54 Copynumber: 2.0 Consensus size: 54
84473241 AAATTTAACT
* * *
84473251 CATTTAATATTCACATTGTTTAATTCAGCCCAAAAATTATACTATGGCAAAACC
1 CATTTAATATTCACATTGTTCAATTCAGCCCAAAAACTATACTATAGCAAAACC
84473305 CATTTAATATTCACATTGTTCAATTCAGCCCAAAAACTATACTATAGCAAAA
1 CATTTAATATTCACATTGTTCAATTCAGCCCAAAAACTATACTATAGCAAAA
84473357 ATTACTTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.32
Consensus pattern (54 bp):
CATTTAATATTCACATTGTTCAATTCAGCCCAAAAACTATACTATAGCAAAACC
Found at i:84479875 original size:46 final size:46
Alignment explanation
Indices: 84479822--84479997 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
84479812 TATTTGGGCA
*
84479822 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCTAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
*** * * *
84479868 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACT-AGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCTAATG
* *
84479913 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* *
84479961 -CCTGAGCTCGTTGAGTTGAGTCAGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84479998 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 4 0.04
46 68 0.63
47 34 0.31
48 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
Found at i:84479977 original size:93 final size:93
Alignment explanation
Indices: 84479818--84479989 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
84479808 AGGATATTTG
* *
84479818 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCTAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
84479883 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCAGAGTTCGAGAGATGTAACTA
* *
84479911 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGA
84479975 GTTGAGTCAGAGTTC
65 GTTGAGTCAGAGTTC
84479990 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCAGAGTTCGAGAGATGTAACTA
Found at i:84485376 original size:46 final size:46
Alignment explanation
Indices: 84485322--84485449 Score: 220
Period size: 46 Copynumber: 2.8 Consensus size: 46
84485312 ATTTGGGCAT
* *
84485322 CCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
84485368 TCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
84485414 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84485450 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:84487289 original size:40 final size:40
Alignment explanation
Indices: 84487091--84487295 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
84487081 CGGAATTTAA
** *
84487091 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84487131 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84487171 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84487211 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
84487251 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
*
84487291 TCGGA
1 CCGGA
84487296 CATCATTCAA
Statistics
Matches: 146, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 4 0.03
40 131 0.90
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84492601 original size:79 final size:81
Alignment explanation
Indices: 84492461--84492645 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
84492451 TTGAATGATG
* *
84492461 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATTCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
84492525 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
84492540 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
84492602 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
84492620 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84492646 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:84492659 original size:40 final size:40
Alignment explanation
Indices: 84492462--84492645 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
84492452 TGAATGATGT
* * * *
84492462 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
84492502 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
84492542 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84492580 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84492621 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
84492646 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:84492667 original size:79 final size:79
Alignment explanation
Indices: 84492514--84492678 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
84492504 GGACTAAGAT
* ** *
84492514 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
84492579 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
84492593 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
84492656 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
84492672 CCGAAGG
1 CCGAAGG
84492679 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:84494247 original size:40 final size:40
Alignment explanation
Indices: 84494147--84494371 Score: 285
Period size: 40 Copynumber: 5.7 Consensus size: 40
84494137 GCTCCTCGTT
* * ** *
84494147 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
84494187 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
84494226 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
84494266 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * * * *
84494306 CGAATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCA
*
84494347 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
84494372 CAGCATTCAA
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.21
40 124 0.74
41 8 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:84503658 original size:39 final size:40
Alignment explanation
Indices: 84503557--84503779 Score: 271
Period size: 40 Copynumber: 5.6 Consensus size: 40
84503547 TTGAATGATA
* *
84503557 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
84503596 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
84503637 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84503676 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84503715 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84503754 AACCGGGCTATGTCCCGAAGGCATTT
1 -TCCGGGCTAAGTCCCGAAGGCATTT
84503780 AAACGAGGAG
Statistics
Matches: 165, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 75 0.45
40 77 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:84503744 original size:79 final size:80
Alignment explanation
Indices: 84503556--84503779 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
84503546 TTTGAATGAT
* * * *
84503556 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCA
84503619 TTTGTGCGAGATACTAA
64 TTTGTGCGAGATACTAA
*
84503636 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
84503698 TTGTGCGAGTTACTAA
65 TTGTGCGAGATACTAA
* * * * *
84503714 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATT
84503779 T
66 T
84503780 AAACGAGGAG
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 56 0.44
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAA
Found at i:84503802 original size:79 final size:79
Alignment explanation
Indices: 84503556--84503813 Score: 208
Period size: 79 Copynumber: 3.3 Consensus size: 79
84503546 TTTGAATGAT
* * * * *
84503556 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGC
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGC
***
84503618 ATTTGTGCGAGAT-ACTAA
62 ATTTAAACGAG-TGACTAA
* * *
84503636 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTT
*** *
84503700 GTGCGAGTTACTAA
66 AAACGAGTGACTAA
* *
84503714 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
84503778 TTAAACGAG-GAGCTAT
64 TTAAACGAGTGA-CTAA
* *
84503794 ATCC-GGTTAAATTCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
84503814 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.01
78 36 0.24
79 68 0.45
80 46 0.30
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTT
AAACGAGTGACTAA
Found at i:84506606 original size:11 final size:11
Alignment explanation
Indices: 84506590--84506615 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
84506580 TTTTTCTTGC
84506590 AATTTAATTTT
1 AATTTAATTTT
84506601 AATTTAATTTT
1 AATTTAATTTT
84506612 AATT
1 AATT
84506616 ATTATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
AATTTAATTTT
Found at i:84516501 original size:23 final size:21
Alignment explanation
Indices: 84516470--84516512 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
84516460 GATTAAGGTA
84516470 TTGAATTAGTGTTATTTTGATAT
1 TTGAATTA--GTTATTTTGATAT
*
84516493 TTGAGTTAGTTATTTTGATA
1 TTGAATTAGTTATTTTGATA
84516513 GATGTATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (21 bp):
TTGAATTAGTTATTTTGATAT
Found at i:84524991 original size:44 final size:43
Alignment explanation
Indices: 84524925--84525053 Score: 138
Period size: 44 Copynumber: 3.0 Consensus size: 43
84524915 CATAGGATTC
*
84524925 CGATATGTGATT-CGTGTAAGACCACGTTTGGGACGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
84524967 CGGTTTGTGATTTACGTGTAAGACC-CTGTCTGGAACAG-TGGCAT
1 CGATATGTGA-TTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* * * *
84525011 TGATATGTGATTACATGTAAGACCACATCTGGGATGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
84525054 TGTACGAGCT
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
42 9 0.13
43 28 0.40
44 32 0.46
45 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:84530576 original size:40 final size:41
Alignment explanation
Indices: 84530498--84530578 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
84530488 TTAGTGCCAT
84530498 CTCAAATAGCCAAAGCTACCTCAGTATCGCACACTTAGTGC
1 CTCAAATAGCCAAAGCTACCTCAGTATCGCACACTTAGTGC
* * *
84530539 CTCATATAGCCAAAGCTA-TTCCA-TTTCGCACACTTAGTGC
1 CTCAAATAGCCAAAGCTACCT-CAGTATCGCACACTTAGTGC
84530579 TATTTATAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 17 0.47
41 19 0.53
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.26
Consensus pattern (41 bp):
CTCAAATAGCCAAAGCTACCTCAGTATCGCACACTTAGTGC
Found at i:84547454 original size:40 final size:40
Alignment explanation
Indices: 84547349--84547515 Score: 234
Period size: 40 Copynumber: 4.2 Consensus size: 40
84547339 CGGATGATAA
* *
84547349 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
84547389 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84547428 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
84547468 CCGGGCTAAGTCCCAAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
84547508 CC-GGCTAA
1 CCGGGCTAA
84547516 ATTCTGAAGG
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
39 43 0.37
40 74 0.63
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84547514 original size:79 final size:79
Alignment explanation
Indices: 84547349--84547515 Score: 232
Period size: 79 Copynumber: 2.1 Consensus size: 79
84547339 CGGATGATAA
* * * *
84547349 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCATTTGA
*
84547414 GCGAGTTACTATAT
66 GCAAGTTACTATAT
*
84547428 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCAAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCAAAGGCATTT
84547492 GAGCAAG-TAGCTATAT
64 GAGCAAGTTA-CTATAT
84547508 CC-GGCTAA
1 CCGGGCTAA
84547516 ATTCTGAAGG
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
78 2 0.03
79 52 0.66
80 25 0.32
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCATTTGA
GCAAGTTACTATAT
Found at i:84550084 original size:21 final size:21
Alignment explanation
Indices: 84550060--84550099 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
84550050 TTACTCCAAG
*
84550060 GAAGCC-GATTGATCCATCTCA
1 GAAGCCAGATTCAT-CATCTCA
84550081 GAAGCCAGATTCATCATCT
1 GAAGCCAGATTCATCATCT
84550100 AGACTGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (21 bp):
GAAGCCAGATTCATCATCTCA
Found at i:84554326 original size:29 final size:29
Alignment explanation
Indices: 84554292--84554352 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
84554282 GCAAAATTGA
84554292 GAATGATTTACCTCGAATATACCGTATGG
1 GAATGATTTACCTCGAATATACCGTATGG
* *
84554321 GAATGATTTACCTCGACTATATCGTATGG
1 GAATGATTTACCTCGAATATACCGTATGG
84554350 GAA
1 GAA
84554353 AACATTCAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (29 bp):
GAATGATTTACCTCGAATATACCGTATGG
Found at i:84561562 original size:27 final size:26
Alignment explanation
Indices: 84561514--84561573 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
84561504 GCGAGGCTGC
*
84561514 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
84561541 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
84561567 CAGATAT
1 CAGATAT
84561574 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:84564318 original size:56 final size:56
Alignment explanation
Indices: 84564251--84564363 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
84564241 ATAGTTACCC
*
84564251 TCTCCCACTTCCAAAGTGGTACTTTCACTGGCTGCAAAAGTCCGGAAGGTAATTGA
1 TCTCCCACTTCCAAAGTGGTACTTTCACTGGCTACAAAAGTCCGGAAGGTAATTGA
*
84564307 TCTCCCACTTCCAAAGTGGTACTTTCACTGGCTACACAAGTCCGGAAGGTAATTGA
1 TCTCCCACTTCCAAAGTGGTACTTTCACTGGCTACAAAAGTCCGGAAGGTAATTGA
84564363 T
1 T
84564364 GTTCAGCTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (56 bp):
TCTCCCACTTCCAAAGTGGTACTTTCACTGGCTACAAAAGTCCGGAAGGTAATTGA
Found at i:84569061 original size:27 final size:26
Alignment explanation
Indices: 84569013--84569072 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
84569003 GCGAGGCTGC
* *
84569013 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCA-AAA
* * *
84569040 CAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATTGTGACGAAGCCACCAAAA
84569066 CAGATAT
1 CAGATAT
84569073 ATATGTGTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:84573498 original size:12 final size:12
Alignment explanation
Indices: 84573481--84573515 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
84573471 AGTTATAATA
84573481 AATAAAAGAAAG
1 AATAAAAGAAAG
84573493 AATAAAAGAAA-
1 AATAAAAGAAAG
*
84573504 AAAAAAAGAAAG
1 AATAAAAGAAAG
84573516 GTAATGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.06
Consensus pattern (12 bp):
AATAAAAGAAAG
Found at i:84574808 original size:40 final size:40
Alignment explanation
Indices: 84574753--84574954 Score: 305
Period size: 40 Copynumber: 5.0 Consensus size: 40
84574743 GTGTGCATGA
84574753 GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGT
* *
84574793 GCAAGTTGATATATCCGGGCTAAGACCCGCAGGCCTTTGT
1 GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGT
* *
84574833 GCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGT
1 GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGT
*
84574873 GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGT
* * ** * *
84574913 GCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAATTGT
1 GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGT
84574953 GC
1 GC
84574955 TTGTGGTAAT
Statistics
Matches: 146, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:84582801 original size:40 final size:40
Alignment explanation
Indices: 84582746--84583024 Score: 432
Period size: 40 Copynumber: 7.0 Consensus size: 40
84582736 TGCATGAGCA
* *
84582746 AGTTGACATATCCGGGCTAAGACCCGCAGGCATTTGTGCG
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCG
*
84582786 AGTTGATATATCCGGGCCAAGACCCGAAGGCATTTGTGCG
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCG
*
84582826 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCG
* *
84582866 AGTTGATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCG
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCG
* *
84582906 AGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCA
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCG
*
84582946 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCG
* ** * *
84582986 AGTTGCTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
84583025 TTGTGGTAAT
Statistics
Matches: 218, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
AGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCG
Found at i:84586635 original size:28 final size:28
Alignment explanation
Indices: 84586576--84586647 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
84586566 CCCCTTTAGG
* * * *
84586576 CCCAATCTCATTCATATGGCCCATCGGG
1 CCCAATCACATTCATATGGCCCACCAGA
* *
84586604 CCCAATCACTTTCATATGGCCCGCCAGA
1 CCCAATCACATTCATATGGCCCACCAGA
84586632 CCCAATCACATTCATA
1 CCCAATCACATTCATA
84586648 GTCATGCAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.26, C:0.38, G:0.12, T:0.24
Consensus pattern (28 bp):
CCCAATCACATTCATATGGCCCACCAGA
Found at i:84607823 original size:37 final size:37
Alignment explanation
Indices: 84607759--84607832 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
84607749 TTACAAGCCA
84607759 AAATCATTATAAGCCACATCTCGTGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCGTGGCTA-ATCACAAC
*
84607796 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCGTGGCTAATCACAAC
84607833 GACATCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCGTGGCTAATCACAAC
Found at i:84613529 original size:39 final size:40
Alignment explanation
Indices: 84613484--84613594 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
84613474 CGGGGTTTAG
* * *
84613484 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
84613523 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
84613563 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
84613595 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:84613554 original size:40 final size:40
Alignment explanation
Indices: 84613507--84613651 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
84613497 CTCGCACAAG
* * * * *
84613507 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
84613547 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
84613587 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGTACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
84613628 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
84613652 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.65
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:84618205 original size:40 final size:40
Alignment explanation
Indices: 84618121--84618345 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
84618111 TTGAATGATG
* * * *
84618121 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
84618161 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84618201 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84618240 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84618280 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
84618321 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84618346 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84618368 original size:119 final size:119
Alignment explanation
Indices: 84618121--84618351 Score: 270
Period size: 119 Copynumber: 1.9 Consensus size: 119
84618111 TTGAATGATG
* * *
84618121 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGTATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
84618186 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
84618240 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
84618303 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAG
84618352 GAGCTATATC
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
118 3 0.03
119 67 0.71
120 24 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:84635627 original size:39 final size:40
Alignment explanation
Indices: 84635582--84635692 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
84635572 CGGGGTTTAG
* * *
84635582 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
84635621 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
84635661 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
84635693 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:84635652 original size:40 final size:40
Alignment explanation
Indices: 84635605--84635749 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
84635595 CTCGCACAAG
* * * *
84635605 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
*
84635645 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
84635685 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGC-TAGCACAAAT
84635726 GCCTTCGGGTCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
84635750 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 61 0.67
41 30 0.33
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:84639846 original size:32 final size:32
Alignment explanation
Indices: 84639810--84639874 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
84639800 CAATTGAATC
84639810 TCCGTACATACATGTACCATATTGTACCAATT
1 TCCGTACATACATGTACCATATTGTACCAATT
*
84639842 TCCGTACATACCTGTACCATATTGTACCAATT
1 TCCGTACATACATGTACCATATTGTACCAATT
84639874 T
1 T
84639875 TGTAGATACC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.35
Consensus pattern (32 bp):
TCCGTACATACATGTACCATATTGTACCAATT
Found at i:84640033 original size:28 final size:28
Alignment explanation
Indices: 84640002--84640103 Score: 100
Period size: 28 Copynumber: 3.6 Consensus size: 28
84639992 TTCTGGATGT
84640002 TTCGCACACTAAGTGCCATCCTCGTTAC
1 TTCGCACACTAAGTGCCATCCTCGTTAC
* *
84640030 TTCGCACACTAAGTGCCATTCTGGATGTA-
1 TTCGCACACTAAGTGCCATCCTCG-T-TAC
* * *
84640059 -TCGCACACGAAGTGCCATCCTTGATAC
1 TTCGCACACTAAGTGCCATCCTCGTTAC
* **
84640086 TACGCACGTTAAGTGCCA
1 TTCGCACACTAAGTGCCA
84640104 CATAAAATTA
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.03
28 55 0.92
29 1 0.02
30 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGTTAC
Found at i:84640092 original size:56 final size:56
Alignment explanation
Indices: 84639969--84640103 Score: 173
Period size: 56 Copynumber: 2.4 Consensus size: 56
84639959 ATGCCATATC
* * * * *
84639969 CGATACT-TGCACACTAAGTGTCGTTCTGGATGTTTCGCACACTAAGTGCCATCCT
1 CGATACTACGCACACTAAGTGCCATTCTGGATGTATCGCACACGAAGTGCCATCCT
* *
84640024 CGTTACTTCGCACACTAAGTGCCATTCTGGATGTATCGCACACGAAGTGCCATCCT
1 CGATACTACGCACACTAAGTGCCATTCTGGATGTATCGCACACGAAGTGCCATCCT
* **
84640080 TGATACTACGCACGTTAAGTGCCA
1 CGATACTACGCACACTAAGTGCCA
84640104 CATAAAATTA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
55 6 0.09
56 62 0.91
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (56 bp):
CGATACTACGCACACTAAGTGCCATTCTGGATGTATCGCACACGAAGTGCCATCCT
Found at i:84646115 original size:32 final size:32
Alignment explanation
Indices: 84646079--84646171 Score: 141
Period size: 32 Copynumber: 2.9 Consensus size: 32
84646069 ATTGAATCTC
*
84646079 CGTACATACATGTACCATATTGTACCAATTTT
1 CGTACATACCTGTACCATATTGTACCAATTTT
84646111 CGTACATACCTGTACCATATTGTACCAATTTT
1 CGTACATACCTGTACCATATTGTACCAATTTT
* * * *
84646143 CGTAGATACCTGTATCATCTCGTACCAAT
1 CGTACATACCTGTACCATATTGTACCAAT
84646172 CTCATACTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (32 bp):
CGTACATACCTGTACCATATTGTACCAATTTT
Found at i:84646304 original size:28 final size:28
Alignment explanation
Indices: 84646273--84646374 Score: 118
Period size: 28 Copynumber: 3.6 Consensus size: 28
84646263 TTCTGGATGT
84646273 TTCGCACACTAAGTGCCATCCTCGTTAC
1 TTCGCACACTAAGTGCCATCCTCGTTAC
* *
84646301 TTCGCACACTAAGTGCCATTCTGGATGTAC
1 TTCGCACACTAAGTGCCATCCTCG-T-TAC
* *
84646331 --CGCACACTAAGTGACATCCTCGATAC
1 TTCGCACACTAAGTGCCATCCTCGTTAC
**
84646357 TTCGCACGTTAAGTGCCA
1 TTCGCACACTAAGTGCCA
84646375 CATATAATTA
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 3 0.05
28 54 0.89
29 1 0.02
30 3 0.05
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGTTAC
Found at i:84646324 original size:56 final size:56
Alignment explanation
Indices: 84646240--84646374 Score: 191
Period size: 56 Copynumber: 2.4 Consensus size: 56
84646230 ATGCCATATC
* * ** *
84646240 CGATACTT-GCACACTAAGTGTCGTTCTGGATGTTTCGCACACTAAGTGCCATCCT
1 CGATACTTCGCACACTAAGTGCCATTCTGGATGTACCGCACACTAAGTGACATCCT
*
84646295 CGTTACTTCGCACACTAAGTGCCATTCTGGATGTACCGCACACTAAGTGACATCCT
1 CGATACTTCGCACACTAAGTGCCATTCTGGATGTACCGCACACTAAGTGACATCCT
**
84646351 CGATACTTCGCACGTTAAGTGCCA
1 CGATACTTCGCACACTAAGTGCCA
84646375 CATATAATTA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 7 0.10
56 63 0.90
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (56 bp):
CGATACTTCGCACACTAAGTGCCATTCTGGATGTACCGCACACTAAGTGACATCCT
Found at i:84648061 original size:28 final size:28
Alignment explanation
Indices: 84648019--84648121 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
84648009 TGGCCCCTTT
*
84648019 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
84648047 -GAGCCCAATCACATTCATATAGTCCATC
1 AG-GCCCAATCACATTCATATGGCCCATC
* **
84648075 AGGCCCAATCACTTTCATATGGCCTGTC
1 AGGCCCAATCACATTCATATGGCCCATC
84648103 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
84648122 GTCATGCAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
27 1 0.02
28 62 0.97
29 1 0.02
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:84648359 original size:16 final size:16
Alignment explanation
Indices: 84648335--84648369 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
84648325 GTAGCCAAAC
84648335 TTTTAGCTTTTCGGCA
1 TTTTAGCTTTTCGGCA
* *
84648351 TTTTGGCTTTTTGGCA
1 TTTTAGCTTTTCGGCA
84648367 TTT
1 TTT
84648370 CGGGATTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.14, G:0.20, T:0.57
Consensus pattern (16 bp):
TTTTAGCTTTTCGGCA
Found at i:84648656 original size:21 final size:21
Alignment explanation
Indices: 84648627--84648666 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
84648617 AACTATACAC
*
84648627 AAGTGACTCGAAAATCATCTT
1 AAGTCACTCGAAAATCATCTT
**
84648648 AAGTCACTCTTAAATCATC
1 AAGTCACTCGAAAATCATC
84648667 CATGACATTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (21 bp):
AAGTCACTCGAAAATCATCTT
Found at i:84651686 original size:34 final size:34
Alignment explanation
Indices: 84651641--84651721 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
84651631 TGTACAATCC
* *
84651641 GGGCCTAAGCCCA-TATCAGTCGCAATATCAATGT
1 GGGCCTTAGCCCATTA-CAGTAGCAATATCAATGT
* * *
84651675 GGGCCTTAGCCCATTACAGTAGCAGTATCAGTTT
1 GGGCCTTAGCCCATTACAGTAGCAATATCAATGT
84651709 GGGCCTTAGCCCA
1 GGGCCTTAGCCCA
84651722 ATTCAATACA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
34 39 0.95
35 2 0.05
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (34 bp):
GGGCCTTAGCCCATTACAGTAGCAATATCAATGT
Found at i:84658079 original size:15 final size:16
Alignment explanation
Indices: 84658050--84658079 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84658040 CAAACATGCT
84658050 TTAACACATTATCAAA
1 TTAACACATTATCAAA
84658066 TTAACACA-TATCAA
1 TTAACACATTATCAA
84658080 CAAGGAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:84659223 original size:25 final size:25
Alignment explanation
Indices: 84659176--84659257 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 25
84659166 GTATGCTTGT
*
84659176 ACGAGCT-ATGAATCGATATGCTCTC
1 ACGAGCTGA-GAATCGATAAGCTCTC
* *
84659201 ATGAGCTGTA-AATCGGTAAGCTCAT-
1 ACGAGCTG-AGAATCGATAAGCTC-TC
*
84659226 ACGAGTTGAGAATCGATAAGCTCTC
1 ACGAGCTGAGAATCGATAAGCTCTC
84659251 ACGAGCT
1 ACGAGCT
84659258 ACAATCGGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
24 2 0.04
25 41 0.91
26 1 0.02
27 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (25 bp):
ACGAGCTGAGAATCGATAAGCTCTC
Found at i:84664735 original size:41 final size:41
Alignment explanation
Indices: 84664690--84664777 Score: 140
Period size: 41 Copynumber: 2.1 Consensus size: 41
84664680 GTTAATTAAG
84664690 TGGAAAATGAATATATAAAATGATTATATGAATCAGTTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATCAGTTATA
* **
84664731 TGGAAAATGATTATATAAAATGATTATATGAATTGGTTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATCAGTTATA
*
84664772 AGGAAA
1 TGGAAA
84664778 TAGTTATATG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.48, C:0.01, G:0.17, T:0.34
Consensus pattern (41 bp):
TGGAAAATGAATATATAAAATGATTATATGAATCAGTTATA
Found at i:84664757 original size:28 final size:27
Alignment explanation
Indices: 84664693--84664762 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
84664683 AATTAAGTGG
*
84664693 AAAATGAATATAT-AAAATGATTATAT
1 AAAATGATTATATGAAAATGATTATAT
* *
84664719 -GAATCAGTTATATGGAAAATGATTATAT
1 AAAATGA-TTATAT-GAAAATGATTATAT
84664747 AAAATGATTATATGAA
1 AAAATGATTATATGAA
84664763 TTGGTTATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
25 4 0.11
26 5 0.14
27 3 0.09
28 19 0.54
29 4 0.11
ACGTcount: A:0.51, C:0.01, G:0.13, T:0.34
Consensus pattern (27 bp):
AAAATGATTATATGAAAATGATTATAT
Found at i:84664770 original size:13 final size:13
Alignment explanation
Indices: 84664694--84664813 Score: 84
Period size: 13 Copynumber: 9.0 Consensus size: 13
84664684 ATTAAGTGGA
* *
84664694 AAATGAATATATA
1 AAATGATTATATG
84664707 AAATGATTATATG
1 AAATGATTATATG
*
84664720 -AATCAGTTATATGG
1 AAATGA-TTATAT-G
*
84664734 AAAATGATTATATA
1 -AAATGATTATATG
84664748 AAATGATTATATG
1 AAATGATTATATG
* * *
84664761 AATTGGTTATAAGG
1 AAATGATTAT-ATG
84664775 AAAT-AGTTATATG
1 AAATGA-TTATATG
*
84664788 -AATTATGTATATG
1 AAATGAT-TATATG
*
84664801 AAATGTTTATATG
1 AAATGATTATATG
84664814 GATATATATG
Statistics
Matches: 84, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
12 8 0.10
13 52 0.62
14 14 0.17
15 6 0.07
16 4 0.05
ACGTcount: A:0.45, C:0.01, G:0.16, T:0.38
Consensus pattern (13 bp):
AAATGATTATATG
Found at i:84669262 original size:3 final size:3
Alignment explanation
Indices: 84669254--84669309 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
84669244 GTGTACTACA
84669254 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
84669301 ATT ATT ATT
1 ATT ATT ATT
84669310 TACAATACAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:84678226 original size:21 final size:21
Alignment explanation
Indices: 84678200--84678240 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
84678190 ATCTGCTCAA
* *
84678200 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
84678221 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
84678241 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:84691539 original size:25 final size:25
Alignment explanation
Indices: 84691511--84691636 Score: 92
Period size: 25 Copynumber: 5.3 Consensus size: 25
84691501 TGAATGGCCA
*
84691511 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
* *
84691536 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-CGAACAT-GCATAT
*
84691558 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
* *
84691583 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-CGAACAT-GCATAT
84691605 ATGTGATGAATGCGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
84691630 ATGTGAT
1 ATGTGAT
84691637 AAGGTAGAAT
Statistics
Matches: 76, Mismatches: 11, Indels: 28
0.66 0.10 0.24
Matches are distributed among these distances:
22 17 0.22
23 18 0.24
24 18 0.24
25 23 0.30
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (25 bp):
ATGTGATGAATGCGAACATGCATAT
Found at i:84691564 original size:22 final size:22
Alignment explanation
Indices: 84691536--84691611 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
84691526 ACATGCATAT
84691536 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
84691558 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
84691582 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
84691605 ATGTGAT
1 ATGTGAT
84691612 GAATGCGAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:84691691 original size:94 final size:94
Alignment explanation
Indices: 84691496--84691701 Score: 290
Period size: 94 Copynumber: 2.2 Consensus size: 94
84691486 TATTTGAGAT
* * *
84691496 AAGGCTGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
1 AAGGCCGAATGGCCAATGTGATGAATGCGAACATGCATATATGTGATAAGGCAGAATGGCCAATG
* *
84691561 TGATGAATGTGAACATGCATATATGTGAT
66 TGATGAACGTGAACATGCATATATGTGAG
*
84691590 AAGGCCGAATGGCCAATGTGATGAATGCGAACATGCATATATGTGATAAGGTAGAATGGCCAATG
1 AAGGCCGAATGGCCAATGTGATGAATGCGAACATGCATATATGTGATAAGGCAGAATGGCCAATG
* * *
84691655 TGATGAACGTGGAAGA-GTATATATGTGGCG
66 TGATGAACGT-GAACATGCATATATGT-GAG
*
84691685 AA-GCCGAATGGCTAATG
1 AAGGCCGAATGGCCAATG
84691702 CGAAACGTGT
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
94 93 0.93
95 7 0.07
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.24
Consensus pattern (94 bp):
AAGGCCGAATGGCCAATGTGATGAATGCGAACATGCATATATGTGATAAGGCAGAATGGCCAATG
TGATGAACGTGAACATGCATATATGTGAG
Found at i:84691696 original size:47 final size:47
Alignment explanation
Indices: 84691468--84691661 Score: 307
Period size: 47 Copynumber: 4.1 Consensus size: 47
84691458 GATTTTATGA
** * * * *
84691468 GATGAATGTGAATGTGTATATTTGAGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
84691515 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
84691562 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* **
84691609 GATGAATGCGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
84691656 GATGAA
1 GATGAA
84691662 CGTGGAAGAG
Statistics
Matches: 138, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 138 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:84693195 original size:49 final size:47
Alignment explanation
Indices: 84692927--84693389 Score: 701
Period size: 47 Copynumber: 9.6 Consensus size: 47
84692917 CCCTTCGGGA
* * * * * *
84692927 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84692974 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84693021 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84693068 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84693115 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84693162 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84693211 CTTATCACATATATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84693262 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84693313 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84693362 CTTATCACATATATACACTTTCACATTC
1 CTTATCACATATATACACTTTCACATTC
84693390 CAATGAATAA
Statistics
Matches: 396, Mismatches: 16, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 204 0.52
49 94 0.24
51 98 0.25
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84695018 original size:13 final size:13
Alignment explanation
Indices: 84695000--84695024 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84694990 TACTAAATTT
84695000 TCATGGATTCAAA
1 TCATGGATTCAAA
84695013 TCATGGATTCAA
1 TCATGGATTCAA
84695025 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:84697729 original size:13 final size:13
Alignment explanation
Indices: 84697698--84697731 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
84697688 GCCTCATGGG
84697698 CATGTGTCTTGGC
1 CATGTGTCTTGGC
**
84697711 TGTGTGTCTTGGC
1 CATGTGTCTTGGC
84697724 CATGTGTC
1 CATGTGTC
84697732 CCCTGCACCT
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.21, G:0.32, T:0.41
Consensus pattern (13 bp):
CATGTGTCTTGGC
Done.