Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 254 of 344
Found at i:84697984 original size:21 final size:22
Alignment explanation
Indices: 84697960--84698003 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
84697950 CACGACCTAC
84697960 CCACACAGGCGTGT-CCTATGT
1 CCACACAGGCGTGTACCTATGT
*
84697981 CCACACGGGCGTGTGACCTATGT
1 CCACACAGGCGTGT-ACCTATGT
84698004 TTAGTGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.18, C:0.32, G:0.27, T:0.23
Consensus pattern (22 bp):
CCACACAGGCGTGTACCTATGT
Found at i:84701338 original size:30 final size:30
Alignment explanation
Indices: 84701297--84701354 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
84701287 CATAGGTTGC
*
84701297 CACATGGGCGTGTGGCT-AGCCCATGTGGCT
1 CACACGGGCGTGT-GCTCAGCCCATGTGGCT
84701327 CACACGGGCGTGTGCTCAGCCCATGTGG
1 CACACGGGCGTGTGCTCAGCCCATGTGG
84701355 AAATGGTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.14, C:0.29, G:0.36, T:0.21
Consensus pattern (30 bp):
CACACGGGCGTGTGCTCAGCCCATGTGGCT
Found at i:84703342 original size:26 final size:26
Alignment explanation
Indices: 84703306--84703358 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
84703296 CCCAAGAAAG
84703306 AATTCACCTAGATTTCATCTATCACT
1 AATTCACCTAGATTTCATCTATCACT
84703332 AATTCACCTAGATTTCATCTATCACT
1 AATTCACCTAGATTTCATCTATCACT
84703358 A
1 A
84703359 TCAATTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (26 bp):
AATTCACCTAGATTTCATCTATCACT
Found at i:84705522 original size:87 final size:81
Alignment explanation
Indices: 84705410--84705587 Score: 214
Period size: 86 Copynumber: 2.1 Consensus size: 81
84705400 TAGCGGAAAT
* * * *
84705410 GCCGCTAAAAACTGAGCAATAGCGGCGTTTTTTGTTAAAACGCTGCTAAAAA-CAGAGCATTAGT
1 GCCGCTAAAAAATGAGCAATAGCGGCG-CTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTA--
*
84705474 GGCGCGGCGCTTTTGGTAAAAC
63 -GC-C-GCGCTTTTAGTAAAAC
* *
84705496 GCCGCTAAAAAATAGAGCATTCGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGC
1 GCCGCTAAAAAAT-GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGC
84705561 CGCGCTTTTAGTAAAAC
65 CGCGCTTTTAGTAAAAC
*
84705578 GCCACTAAAA
1 GCCGCTAAAA
84705588 GTCATATAAC
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
82 24 0.29
83 1 0.01
84 2 0.02
86 33 0.40
87 22 0.27
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (81 bp):
GCCGCTAAAAAATGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCC
GCGCTTTTAGTAAAAC
Found at i:84705533 original size:41 final size:41
Alignment explanation
Indices: 84705410--84705587 Score: 189
Period size: 41 Copynumber: 4.2 Consensus size: 41
84705400 TAGCGGAAAT
* * * *
84705410 GCCGCT-AAAAACTGAGCAATAGCGGCGTTTTTTGTTAAAAC
1 GCCGCTAAAAAACAGAGCATTAGCGGCG-CTTTTGGTAAAAC
*
84705451 GCTGCT-AAAAACAGAGCATTAGTGGCGCGGCGCTTTTGGTAAAAC
1 GCCGCTAAAAAACAGAGCATTA-----GCGGCGCTTTTGGTAAAAC
* *
84705496 GCCGCTAAAAAATAGAGCATTCGCGGCGCTTTTGGTAAAAC
1 GCCGCTAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAAC
* * *
84705537 GCCGCTAAAAACCAGAGCATTAGCCGCGCTTTTAGTAAAAC
1 GCCGCTAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAAC
*
84705578 GCCACTAAAA
1 GCCGCTAAAA
84705588 GTCATATAAC
Statistics
Matches: 117, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
41 82 0.70
45 16 0.14
46 19 0.16
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (41 bp):
GCCGCTAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAAC
Found at i:84706828 original size:7 final size:7
Alignment explanation
Indices: 84706816--84706856 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
84706806 AAATCTTCAA
84706816 AAAAAAT
1 AAAAAAT
84706823 AAAAAAT
1 AAAAAAT
84706830 AAAAAAT
1 AAAAAAT
84706837 AAAAAAT
1 AAAAAAT
84706844 AAAAAAT
1 AAAAAAT
84706851 AAAAAA
1 AAAAAA
84706857 CTTAAAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:84706840 original size:21 final size:22
Alignment explanation
Indices: 84706816--84706865 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
84706806 AAATCTTCAA
84706816 AAAAAATAAAAAATAAAAAA-T
1 AAAAAATAAAAAATAAAAAACT
84706837 AAAAAATAAAAAATAAAAAACT
1 AAAAAATAAAAAATAAAAAACT
*
84706859 TAAAAAT
1 AAAAAAT
84706866 TTAATATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 20 0.74
22 7 0.26
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (22 bp):
AAAAAATAAAAAATAAAAAACT
Found at i:84706874 original size:7 final size:7
Alignment explanation
Indices: 84706864--84706895 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
84706854 AAACTTAAAA
84706864 ATTTAAT
1 ATTTAAT
84706871 ATTTAAT
1 ATTTAAT
84706878 ATTTAAT
1 ATTTAAT
84706885 ATTTAAT
1 ATTTAAT
84706892 ATTT
1 ATTT
84706896 TAGTCCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTAAT
Found at i:84711406 original size:19 final size:19
Alignment explanation
Indices: 84711383--84711436 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
84711373 ATTTAATCTA
84711383 ATTTTTATTATT-TA-TTTT
1 ATTTTTATT-TTATATTTTT
*
84711401 AGTTTTGATTTTATATTTTT
1 A-TTTTTATTTTATATTTTT
84711421 ATTTTTATTTTA-ATTT
1 ATTTTTATTTTATATTT
84711437 GATAATGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
18 7 0.23
19 19 0.61
20 5 0.16
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (19 bp):
ATTTTTATTTTATATTTTT
Found at i:84711431 original size:6 final size:6
Alignment explanation
Indices: 84711383--84711436 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
84711373 ATTTAATCTA
* *
84711383 ATTTTT ATTATTT A-TTTT AGTTTTG ATTTTAT ATTTTT ATTTTT ATTTTA
1 ATTTTT ATT-TTT ATTTTT A-TTTTT ATTTT-T ATTTTT ATTTTT ATTTTT
84711433 ATTT
1 ATTT
84711437 GATAATGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
5 4 0.10
6 24 0.59
7 13 0.32
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:84712320 original size:28 final size:28
Alignment explanation
Indices: 84712273--84712335 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
84712263 TGAGCACACT
*
84712273 AATAAAAAGATAGACAAAAATAAAATAA
1 AATAAAAAGATAGACAAAAACAAAATAA
* * *
84712301 GATAAAGAGATA-ACATAAAACATAATAA
1 AATAAAAAGATAGACA-AAAACAAAATAA
84712329 AATAAAA
1 AATAAAA
84712336 CATATAAGTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
27 3 0.11
28 25 0.89
ACGTcount: A:0.71, C:0.05, G:0.08, T:0.16
Consensus pattern (28 bp):
AATAAAAAGATAGACAAAAACAAAATAA
Found at i:84712333 original size:15 final size:15
Alignment explanation
Indices: 84712310--84712339 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
84712300 AGATAAAGAG
*
84712310 ATAACATAAAACATA
1 ATAAAATAAAACATA
84712325 ATAAAATAAAACATA
1 ATAAAATAAAACATA
84712340 TAAGTCTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (15 bp):
ATAAAATAAAACATA
Found at i:84712363 original size:6 final size:6
Alignment explanation
Indices: 84712348--84712402 Score: 58
Period size: 6 Copynumber: 9.3 Consensus size: 6
84712338 TATAAGTCTG
* * * * *
84712348 AAAATT AAAATA AAAA-A CAAATA ACAACA AAAATA CAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
84712395 AAAATA AA
1 AAAATA AA
84712403 TGAAATAAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
5 4 0.10
6 35 0.90
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:84712410 original size:21 final size:22
Alignment explanation
Indices: 84712384--84712426 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
84712374 ACAAAAATAC
84712384 AAATAAAA-ATAAAAATAAATG
1 AAATAAAACATAAAAATAAATG
*
84712405 AAATAAAACATAAAACTAAATG
1 AAATAAAACATAAAAATAAATG
84712427 GAATCAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.19
Consensus pattern (22 bp):
AAATAAAACATAAAAATAAATG
Found at i:84712704 original size:96 final size:97
Alignment explanation
Indices: 84712591--84712828 Score: 306
Period size: 97 Copynumber: 2.5 Consensus size: 97
84712581 TTTTTAAATT
* * * *
84712591 TAATTATTTAATCTTATTTTCCTA-TACAAGAAAATCTTAATTATTTTTATTATCATTAACATTA
1 TAATTATTTAATCTTATTTTCCTACTAAAAGAAAATATTAATTACTTTCATTATCATTAACA-TA
*
84712655 AAATTA-TTTATTAATTATTTAA-TTTTTGAACAA
65 AAA-AACTTTATTAATTATTTAACTTTTT-AACAA
*
84712688 TAATTATTT-ATCTTATTTGT-CTACTAAAATAAAATATTAATTACTTTCATTATCATTAACATA
1 TAATTATTTAATCTTATTT-TCCTACTAAAAGAAAATATTAATTACTTTCATTATCATTAACATA
**
84712751 AAAAACTTTATTAATTATTTAACTTTTTAATGA
65 AAAAACTTTATTAATTATTTAACTTTTTAACAA
* * *
84712784 TAATTATTTAATATTATTTTCTTATTAAAAGAAAATATTAATTAC
1 TAATTATTTAATCTTATTTTCCTACTAAAAGAAAATATTAATTAC
84712829 ATTAACATTA
Statistics
Matches: 123, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
95 1 0.01
96 46 0.37
97 76 0.62
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (97 bp):
TAATTATTTAATCTTATTTTCCTACTAAAAGAAAATATTAATTACTTTCATTATCATTAACATAA
AAAACTTTATTAATTATTTAACTTTTTAACAA
Found at i:84713749 original size:14 final size:13
Alignment explanation
Indices: 84713725--84713773 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
84713715 TTTTGAGCAA
*
84713725 TTTAATTCTTTTC
1 TTTATTTCTTTTC
84713738 TTTATGTTCTTTTAAC
1 TTTAT-TTCTTTT--C
*
84713754 TTTATTTTTTTTC
1 TTTATTTCTTTTC
84713767 TTTATTT
1 TTTATTT
84713774 TCCATTCTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 12 0.39
14 7 0.23
15 6 0.19
16 6 0.19
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.73
Consensus pattern (13 bp):
TTTATTTCTTTTC
Found at i:84718208 original size:50 final size:51
Alignment explanation
Indices: 84718103--84718243 Score: 133
Period size: 50 Copynumber: 2.8 Consensus size: 51
84718093 CTGCACAAGT
* * * * * * * *
84718103 TGAGAAGCCTTCAACGCAAGAACAGCCTTAGGATCAGCAAATACCGGAGCA
1 TGAGGAGCCTCCAATGCAGGAACAGCCTTAGCATCAGCAAACACCGAAACA
* * * *
84718154 TGAGGAGCCTCCAACT-TAGGAACAGCC-TAGTATCAGCAAACACTGAAACT
1 TGAGGAGCCTCCAA-TGCAGGAACAGCCTTAGCATCAGCAAACACCGAAACA
* *
84718204 TGAGGAGTCTCCAATGCAGGAACCGCCTTAGCATCAGCAA
1 TGAGGAGCCTCCAATGCAGGAACAGCCTTAGCATCAGCAA
84718244 CGAAAGGCAC
Statistics
Matches: 72, Mismatches: 15, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
49 1 0.01
50 39 0.54
51 32 0.44
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.16
Consensus pattern (51 bp):
TGAGGAGCCTCCAATGCAGGAACAGCCTTAGCATCAGCAAACACCGAAACA
Found at i:84719512 original size:23 final size:22
Alignment explanation
Indices: 84719474--84719526 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
84719464 ATTTTATTAT
*
84719474 TTTC-CTTTTTCTTTCCTTCCC
1 TTTCTCTTTTTCATTCCTTCCC
84719495 TTTCTCTTTTTCCATTCCTTCCC
1 TTTCTCTTTTT-CATTCCTTCCC
84719518 -TTCTCTTTT
1 TTTCTCTTTT
84719527 CCTTTTCTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 4 0.14
22 15 0.52
23 10 0.34
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTCTCTTTTTCATTCCTTCCC
Found at i:84719879 original size:19 final size:18
Alignment explanation
Indices: 84719827--84719882 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 18
84719817 ATTATAAAAA
*
84719827 ATAAAAATAATAAATTTT
1 ATAAAAATTATAAATTTT
*
84719845 AGAAAAATTATTAAATTTT
1 ATAAAAATTA-TAAATTTT
*
84719864 ATTAAAAATTAGAAATTTT
1 A-TAAAAATTATAAATTTT
84719883 TTTATAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 8 0.25
19 16 0.50
20 8 0.25
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (18 bp):
ATAAAAATTATAAATTTT
Found at i:84719883 original size:20 final size:21
Alignment explanation
Indices: 84719827--84719894 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 21
84719817 ATTATAAAAA
*
84719827 ATAAAAATAAT-AAA-TTT-T
1 ATAAAAATTATGAAATTTTAT
* *
84719845 AGAAAAATTATTAAATTTTAT
1 ATAAAAATTATGAAATTTTAT
*
84719866 -TAAAAATTA-GAAATTTTTTT
1 ATAAAAATTATGAAA-TTTTAT
84719886 ATAAAAATT
1 ATAAAAATT
84719895 GTAAAAAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
18 9 0.22
19 6 0.15
20 16 0.40
21 9 0.22
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (21 bp):
ATAAAAATTATGAAATTTTAT
Found at i:84719959 original size:19 final size:19
Alignment explanation
Indices: 84719916--84719960 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
84719906 AAAAATAAAT
* * *
84719916 TAAAATATTATACAATTCA
1 TAAAAAATTATAAAATGCA
84719935 TAAAAAATTATAAAATGCA
1 TAAAAAATTATAAAATGCA
*
84719954 TCAAAAA
1 TAAAAAA
84719961 GCCCCTTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAAAAATTATAAAATGCA
Found at i:84720081 original size:10 final size:10
Alignment explanation
Indices: 84720062--84720115 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
84720052 GACATGTGAC
*
84720062 AAAAAATAAT
1 AAAAATTAAT
84720072 AAAAATTAAT
1 AAAAATTAAT
*
84720082 AAAAATCAAT
1 AAAAATTAAT
* *
84720092 AAAAGTTAAAG
1 AAAAATT-AAT
84720103 AAAAATT-AT
1 AAAAATTAAT
84720112 AAAA
1 AAAA
84720116 TATTTCTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
9 5 0.14
10 23 0.64
11 8 0.22
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (10 bp):
AAAAATTAAT
Found at i:84720224 original size:9 final size:9
Alignment explanation
Indices: 84720205--84720273 Score: 52
Period size: 9 Copynumber: 7.4 Consensus size: 9
84720195 CTTTATAAAA
84720205 TTTTATAATT
1 TTTTAT-ATT
84720215 TTTTATA-T
1 TTTTATATT
* *
84720223 TTCTATATA
1 TTTTATATT
*
84720232 TTTTATAAT
1 TTTTATATT
*
84720241 TTTTACGATT
1 TTTTA-TATT
84720251 TTTATATATT
1 TTT-TATATT
84720261 TTTCT-TATT
1 TTT-TATATT
84720270 TTTT
1 TTTT
84720274 TCTAATTTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
8 8 0.17
9 19 0.40
10 18 0.38
11 2 0.04
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (9 bp):
TTTTATATT
Found at i:84720239 original size:27 final size:27
Alignment explanation
Indices: 84720204--84720262 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
84720194 ACTTTATAAA
*
84720204 ATTTTATAATTTTTTA-TATTTCTATAT
1 ATTTTATAA-TTTTTACGATTTCTATAT
*
84720231 ATTTTATAATTTTTACGATTTTTATAT
1 ATTTTATAATTTTTACGATTTCTATAT
84720258 ATTTT
1 ATTTT
84720263 TCTTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (27 bp):
ATTTTATAATTTTTACGATTTCTATAT
Found at i:84720270 original size:19 final size:18
Alignment explanation
Indices: 84720222--84720272 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
84720212 ATTTTTTATA
84720222 TTTCTATATATTTTATAATT
1 TTTCT-TAT-TTTTATAATT
*
84720242 TTTAC-GATTTTTATATATT
1 TTT-CTTATTTTTATA-ATT
84720261 TTTCTTATTTTT
1 TTTCTTATTTTT
84720273 TTCTAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
18 8 0.31
19 14 0.54
20 3 0.12
21 1 0.04
ACGTcount: A:0.24, C:0.06, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTCTTATTTTTATAATT
Found at i:84726928 original size:11 final size:12
Alignment explanation
Indices: 84726899--84726951 Score: 56
Period size: 13 Copynumber: 4.4 Consensus size: 12
84726889 TATACTTATT
*
84726899 AAATAATAA-TA
1 AAATATTAATTA
84726910 AAATATATAATTA
1 AAATAT-TAATTA
*
84726923 AAATATCTTATTA
1 AAATAT-TAATTA
84726936 AAATATTAA-TA
1 AAATATTAATTA
84726947 AAATA
1 AAATA
84726952 ATATTTATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
11 12 0.33
12 5 0.14
13 19 0.53
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
AAATATTAATTA
Found at i:84739070 original size:210 final size:209
Alignment explanation
Indices: 84738661--84739284 Score: 960
Period size: 210 Copynumber: 3.0 Consensus size: 209
84738651 AGATCATGTT
* *
84738661 ATTTGTATCCCTTTTCACATAATTTTATCATGTTTAATAGTAAAATTTAGTCAATTCAGTAATAA
1 ATTTGTATCCCTTTTCACATAATTTTAGCATGTTTAATAGTAAAATTAAGTCAATTCAGTAATAA
* *
84738726 TTTATGTTTTTATAGTTTAAGTAGTCAATTTATGGTTTTTAGTAGTTTTGTGGTATTTGATATCT
66 TTTATGTTTTTATAGTTTAAGTAGTCAATTTATGATTTTTAGTAGTTTTATGGTATTTGATATCT
* * * * **
84738791 AAATAAGGTTATCTGGTTAGGTAGGATAGATCAAGAGCCAAAAATGCAACTTTAGGCTGAAATTT
131 AAATAAGGTTATGTGGTTACGTAGGATAGATCGAGAGCCAAAGATGCAACTTCGGGCTGAAATTT
**
84738856 TTGCCAATGTTGCA
196 TTGCCAATGTCACA
*
84738870 ATTTGTATCCCTTTTCACATAATTTTAGCATGTTTAATAGTAAAATTAAGTCAATTTAGTAATAA
1 ATTTGTATCCCTTTTCACATAATTTTAGCATGTTTAATAGTAAAATTAAGTCAATTCAGTAATAA
* * *
84738935 TTTATGTTTTTTATAGTTTAAGTAGTCAACTTATGATTTTTAATAGTTTTATGGCATTTGATATC
66 TTTATG-TTTTTATAGTTTAAGTAGTCAATTTATGATTTTTAGTAGTTTTATGGTATTTGATATC
* * * *
84739000 TAAATAAGGTTATGTGGTTACGTAGGACATATCGAGAGCCAAAGATGCAACTTCGGGCTCAAAAT
130 TAAATAAGGTTATGTGGTTACGTAGGATAGATCGAGAGCCAAAGATGCAACTTCGGGCTGAAATT
*
84739065 TTTGCCAATGTCACG
195 TTTGCCAATGTCACA
*
84739080 ATTTGTATCCCTTTTCACATAATTTTAGCATGTTTAATAGTAAAATTAAGTCAATTCAGTAATAT
1 ATTTGTATCCCTTTTCACATAATTTTAGCATGTTTAATAGTAAAATTAAGTCAATTCAGTAATAA
*
84739145 TTTATGTTTTTATAGTTTAAGTAGTTAATTTATGATTTTTTTAGTAGTTTTATGGTATTTGATAT
66 TTTATGTTTTTATAGTTTAAGTAGTCAATTTATGA--TTTTTAGTAGTTTTATGGTATTTGATAT
* ** * * *
84739210 CTAAATAAGGTTATGTGATTATATAGGATAGATCGGGAGCCAAAGATGCAATTTCGAGCTGAAAT
129 CTAAATAAGGTTATGTGGTTACGTAGGATAGATCGAGAGCCAAAGATGCAACTTCGGGCTGAAAT
84739275 TTTTGCCAAT
194 TTTTGCCAAT
84739285 ATTACGACCA
Statistics
Matches: 375, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
209 95 0.25
210 189 0.50
211 91 0.24
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (209 bp):
ATTTGTATCCCTTTTCACATAATTTTAGCATGTTTAATAGTAAAATTAAGTCAATTCAGTAATAA
TTTATGTTTTTATAGTTTAAGTAGTCAATTTATGATTTTTAGTAGTTTTATGGTATTTGATATCT
AAATAAGGTTATGTGGTTACGTAGGATAGATCGAGAGCCAAAGATGCAACTTCGGGCTGAAATTT
TTGCCAATGTCACA
Found at i:84743805 original size:2 final size:2
Alignment explanation
Indices: 84743798--84743846 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
84743788 ATATGCTATC
84743798 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
84743840 GA GA GA G
1 GA GA GA G
84743847 CTACAACCAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:84746075 original size:36 final size:36
Alignment explanation
Indices: 84746028--84746099 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
84746018 TCTCGTAATA
84746028 CTAGGCTAAGATGTTGTTTTACAATGATTTTAACTT
1 CTAGGCTAAGATGTTGTTTTACAATGATTTTAACTT
*
84746064 CTAGGCTAAGATGTTGTTTTACAGTGATTTTAACTT
1 CTAGGCTAAGATGTTGTTTTACAATGATTTTAACTT
84746100 ATTTTGATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.44
Consensus pattern (36 bp):
CTAGGCTAAGATGTTGTTTTACAATGATTTTAACTT
Found at i:84747321 original size:6 final size:6
Alignment explanation
Indices: 84747310--84747340 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
84747300 GCAAGTTTCC
*
84747310 ATTTTT ATTTTT ATTTTT ATTTTC ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A
84747341 GAAACCTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:84749864 original size:16 final size:16
Alignment explanation
Indices: 84749845--84749875 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
84749835 GGATGCAATT
84749845 GAATAGAGCTGTAATA
1 GAATAGAGCTGTAATA
84749861 GAATAGAGCTGTAAT
1 GAATAGAGCTGTAAT
84749876 CAACAATCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (16 bp):
GAATAGAGCTGTAATA
Found at i:84750076 original size:14 final size:14
Alignment explanation
Indices: 84750040--84750080 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
84750030 GTTATTAAAT
*
84750040 TTTAAT-AAAATTA
1 TTTAATAAAAATAA
*
84750053 -TTATTAAAAATAA
1 TTTAATAAAAATAA
84750066 TTTAATAAAAATAA
1 TTTAATAAAAATAA
84750080 T
1 T
84750081 AAATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAAATAA
Found at i:84750158 original size:58 final size:58
Alignment explanation
Indices: 84750039--84750180 Score: 162
Period size: 58 Copynumber: 2.4 Consensus size: 58
84750029 TGTTATTAAA
* ** *
84750039 TTTTAATAAAATTATTATTAAA-AATAATTTAATAAAAATAATAAATAATTTAACCATT
1 TTTTAATAAAATTATTATTAAATAA-AACTTAATAAAAATAATAAATAATTTAAAAAAT
* * *
84750097 TTTTAACATAATTATTATTAAATAAAACTTAAT-AAAATAATATATAATTTAATAAAAT
1 TTTTAATAAAATTATTATTAAATAAAACTTAATAAAAATAATAAATAATTTAA-AAAAT
* * *
84750155 TTTTAATACATTTATTATTATATAAA
1 TTTTAATAAAATTATTATTAAATAAA
84750181 TTAAAAAATC
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
57 18 0.25
58 51 0.72
59 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (58 bp):
TTTTAATAAAATTATTATTAAATAAAACTTAATAAAAATAATAAATAATTTAAAAAAT
Found at i:84752996 original size:32 final size:32
Alignment explanation
Indices: 84752955--84753021 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
84752945 GGTTGTAATC
84752955 TATTCCTATTACACCCAACCAAACAAAATGTT
1 TATTCCTATTACACCCAACCAAACAAAATGTT
84752987 TATTCCTATTACACCCAACCAAACAAAATGTT
1 TATTCCTATTACACCCAACCAAACAAAATGTT
84753019 TAT
1 TAT
84753022 AGTAAATATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.40, C:0.27, G:0.03, T:0.30
Consensus pattern (32 bp):
TATTCCTATTACACCCAACCAAACAAAATGTT
Found at i:84767238 original size:7 final size:7
Alignment explanation
Indices: 84767226--84767251 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
84767216 CAATTCTCTA
84767226 ACCAAGT
1 ACCAAGT
84767233 ACCAAGT
1 ACCAAGT
84767240 ACCAAGT
1 ACCAAGT
84767247 ACCAA
1 ACCAA
84767252 CCATGAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.31, G:0.12, T:0.12
Consensus pattern (7 bp):
ACCAAGT
Found at i:84770179 original size:36 final size:36
Alignment explanation
Indices: 84770138--84770210 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
84770128 TTTATGTGTT
84770138 TAATTTTTAATTCGTTTAATAATATATTTTTATTCC
1 TAATTTTTAATTCGTTTAATAATATATTTTTATTCC
*
84770174 TAATTTTTAATTTGTTTAATAATATATTTTTATTCC
1 TAATTTTTAATTCGTTTAATAATATATTTTTATTCC
84770210 T
1 T
84770211 TATAAAGTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (36 bp):
TAATTTTTAATTCGTTTAATAATATATTTTTATTCC
Found at i:84770226 original size:39 final size:36
Alignment explanation
Indices: 84770146--84770226 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
84770136 TTTAATTTTT
* *** *
84770146 AATTCGTTTAATAATATATTTTTATTCCTAATTTTT
1 AATTTGTTTAATAATATATTTTTATTCCTAAAAGTA
84770182 AATTTGTTTAATAATATATTTTTATTCCTTATAAAGTA
1 AATTTGTTTAATAATATATTTTTATTCC-TA-AAAGTA
84770220 ATATTTG
1 A-ATTTG
84770227 AATTATTGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
36 27 0.73
37 2 0.05
38 3 0.08
39 5 0.14
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (36 bp):
AATTTGTTTAATAATATATTTTTATTCCTAAAAGTA
Found at i:84772287 original size:18 final size:18
Alignment explanation
Indices: 84772247--84772288 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
84772237 ACACCCTGCT
**
84772247 TATATATACATGTATTGA
1 TATATATACATGTATACA
*
84772265 AATATATACATGTATACA
1 TATATATACATGTATACA
84772283 TATATA
1 TATATA
84772289 AGCAGGGCTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (18 bp):
TATATATACATGTATACA
Found at i:84789569 original size:48 final size:48
Alignment explanation
Indices: 84789513--84789826 Score: 276
Period size: 48 Copynumber: 6.5 Consensus size: 48
84789503 TGTGCTAGTA
* *
84789513 TAAGACCATGTCTAGGACATGGCGTCAGCCACAATATGAGAGCCAGTG
1 TAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCCAGTG
* * * * * *
84789561 TAAGACCATGTTTAGAACATGGCATCAGCAATGTTGTGAGAGCCAGTG
1 TAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCCAGTG
*** * * *
84789609 TAAGACCATGTCT-GGAACATGGCATCAGTGTCGATTTGTGTA-CTAGTG
1 TAAGACCATGTCTAGG-ACATGGCATCAGCCACGATATGAG-AGCCAGTG
* * * * *
84789657 TAAGACCATGTCTGGGACACGGCGTTAGTCAC-ATTATGAGAGCCAGTG
1 TAAGACCATGTCTAGGACATGGCATCAGCCACGA-TATGAGAGCCAGTG
* * * * *
84789705 TAAGACCATATCTAGGACATGGCATCAG-CATTGAGACGAGAGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATCAGCCA-CGATATGAGAGCCAGTG
* * ** * * *
84789753 TAAGACCATGTCTGGGACATGGTATTGGCCTCGACATGTGAGCCAGTG
1 TAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCCAGTG
*
84789801 TAAGACCATGTCTGGGACATGGCATC
1 TAAGACCATGTCTAGGACATGGCATC
84789827 GGCAATTTGC
Statistics
Matches: 210, Mismatches: 48, Indels: 16
0.77 0.18 0.06
Matches are distributed among these distances:
47 5 0.02
48 200 0.95
49 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCCAGTG
Found at i:84789761 original size:144 final size:144
Alignment explanation
Indices: 84789501--84789819 Score: 399
Period size: 144 Copynumber: 2.2 Consensus size: 144
84789491 TTGGGTGATG
* * * *
84789501 TGTGTGCTAGTATAAGACCATGTCTAGGACATGGCGTCAGCCACAATATGAGAGCCAGTGTAAGA
1 TGTGTACTAGTGTAAGACCATGTCTGGGACACGGCGTCAGCCACAATATGAGAGCCAGTGTAAGA
* * * *
84789566 CCATGTTTAGAACATGGCATCAGCAATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGAACATGG
66 CCATATCTAGAACATGGCATCAGCAATGTAGCGAGAGCCAGTGTAAGACCATGTCTGGAACATGG
** **
84789631 CATCAGTGTCGATT
131 CATCAGCCTCGACA
* * *
84789645 TGTGTACTAGTGTAAGACCATGTCTGGGACACGGCGTTAGTCACATTATGAGAGCCAGTGTAAGA
1 TGTGTACTAGTGTAAGACCATGTCTGGGACACGGCGTCAGCCACAATATGAGAGCCAGTGTAAGA
* * * *
84789710 CCATATCTAGGACATGGCATCAGCATTG-AGACGAGAGCTAGTGTAAGACCATGTCTGGGACATG
66 CCATATCTAGAACATGGCATCAGCAATGTAG-CGAGAGCCAGTGTAAGACCATGTCTGGAACATG
* **
84789774 GTATTGGCCTCGACA
130 GCATCAGCCTCGACA
*
84789789 TGTG-AGCCAGTGTAAGACCATGTCTGGGACA
1 TGTGTA-CTAGTGTAAGACCATGTCTGGGACA
84789820 TGGCATCGGC
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
143 2 0.01
144 148 0.99
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (144 bp):
TGTGTACTAGTGTAAGACCATGTCTGGGACACGGCGTCAGCCACAATATGAGAGCCAGTGTAAGA
CCATATCTAGAACATGGCATCAGCAATGTAGCGAGAGCCAGTGTAAGACCATGTCTGGAACATGG
CATCAGCCTCGACA
Found at i:84790303 original size:59 final size:58
Alignment explanation
Indices: 84790211--84790386 Score: 273
Period size: 59 Copynumber: 3.0 Consensus size: 58
84790201 CTTTTTCATT
* * *
84790211 TTCTTATAGTGCCACCAAGTCAGTACCGAGGATCAAGGGACTTCGGAGACATCGATCAC
1 TTCTTATAGTG-CAGCAAGTTAGTACCGGGGATCAAGGGACTTCGGAGACATCGATCAC
84790270 TTCTTATAGTGCTAGCAAGTTAGTACCGGGGATCAAGGGACTTCGGAGACATCGATCAC
1 TTCTTATAGTGC-AGCAAGTTAGTACCGGGGATCAAGGGACTTCGGAGACATCGATCAC
*
84790329 TTCTTATAGTGCCGCCAAGTTAGTACCGGGGATCAAGGGA-TGTCGGAGACATCGATCA
1 TTCTTATAGTGCAG-CAAGTTAGTACCGGGGATCAAGGGACT-TCGGAGACATCGATCA
84790387 AACTATCACC
Statistics
Matches: 110, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
58 3 0.03
59 107 0.97
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (58 bp):
TTCTTATAGTGCAGCAAGTTAGTACCGGGGATCAAGGGACTTCGGAGACATCGATCAC
Found at i:84798532 original size:13 final size:13
Alignment explanation
Indices: 84798514--84798540 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84798504 AAAGTAATCG
84798514 CACACGGGCGTGT
1 CACACGGGCGTGT
84798527 CACACGGGCGTGT
1 CACACGGGCGTGT
84798540 C
1 C
84798541 CCTACGGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:84805791 original size:37 final size:37
Alignment explanation
Indices: 84805732--84805877 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
84805722 AGCTCAGACG
* * *
84805732 AAATCACCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
84805769 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* **
84805806 TAATCTCCACACGTAGTCATCGGGTCTTACTGGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
84805843 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
84805878 ATATATTTCC
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:84806081 original size:50 final size:50
Alignment explanation
Indices: 84806027--84806124 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
84806017 CATTGCCTAC
*
84806027 ATATTTCACACTAG-CCATTCGGCTTTACCACCTATACATATCTCATATAT
1 ATATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATAT
* *
84806077 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
1 ATATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
84806125 TCACCACATT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 42 0.95
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (50 bp):
ATATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:84806184 original size:47 final size:46
Alignment explanation
Indices: 84806082--84806274 Score: 230
Period size: 47 Copynumber: 4.1 Consensus size: 46
84806072 TATATATATT
* * * *
84806082 TCACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCCACATATGCAT-GCTCACATTCA
*
84806128 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
* * *
84806175 TCATATTGGCCATTCGGCCTTATCGCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
*
84806222 TCACATTGGCCATTCGGCCTTATCTCATATATACGCAT--TCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATAT--GCATGCTCACATTCA
84806269 TCACAT
1 TCACAT
84806275 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
46 19 0.15
47 97 0.74
48 11 0.08
49 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCCACATATGCATGCTCACATTCA
Found at i:84810631 original size:40 final size:40
Alignment explanation
Indices: 84810360--84810618 Score: 392
Period size: 40 Copynumber: 6.5 Consensus size: 40
84810350 CCAGCATGAT
* * * *
84810360 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
84810400 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
84810440 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGTACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
84810480 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
84810520 TGCTCTTCGGGACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
84810560 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
84810600 TGCTCTTCGGGACTTAGCC
1 TGCTCTTCGGGACTTAGCC
84810619 TAGGTATATC
Statistics
Matches: 199, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 199 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:84811958 original size:37 final size:37
Alignment explanation
Indices: 84811894--84812044 Score: 212
Period size: 37 Copynumber: 4.1 Consensus size: 37
84811884 CCTTTAGCTT
* * * *
84811894 AGACGAAATCACCACACGAAGTTATCGGGTCTTACCC
1 AGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
84811931 AGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
* * *
84811968 GGACATAATCTCCACACGTAGTCATCGGGTCTTACTC
1 AGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
* * *
84812005 GGACATACTCTCCACACGTAGTCATCGGGTCTTACCC
1 AGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
84812042 AGA
1 AGA
84812045 ATATATTTCC
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
Found at i:84812248 original size:50 final size:50
Alignment explanation
Indices: 84812194--84812291 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
84812184 CATCGCCTAC
*
84812194 ATATTTCACACTAG-CCATTCGGCTTTACCACCTATACATATCTCATATAT
1 ATATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATAT
* *
84812244 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
1 ATATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
84812292 TCACCACATT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 42 0.95
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (50 bp):
ATATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:84812348 original size:47 final size:46
Alignment explanation
Indices: 84812249--84812441 Score: 235
Period size: 47 Copynumber: 4.1 Consensus size: 46
84812239 TATATATATT
* * * *
84812249 TCACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCCACATATGCAT-GCTCACATTCA
*
84812295 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
* *
84812342 TCACATTGGCCATTCGGCCTTATCCCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT-CCACATATGCATGCTCACATTCA
* * ***
84812389 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
84812436 TCACAT
1 TCACAT
84812442 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
46 20 0.15
47 100 0.76
48 12 0.09
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCCACATATGCATGCTCACATTCA
Found at i:84820438 original size:43 final size:43
Alignment explanation
Indices: 84820377--84820544 Score: 241
Period size: 43 Copynumber: 4.0 Consensus size: 43
84820367 AATGTGACAT
*
84820377 TCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATGATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATGATA
*
84820420 TCGGGCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGATGATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATGATA
** * * * *
84820463 TCTAGCTTTGGGCCTAGTAGGCTATAATACCGGTGAGATGATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATGATA
*
84820506 TCGGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTGA-ATGA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATGA
84820545 GTTCAGACTT
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
41 4 0.04
42 10 0.09
43 95 0.87
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (43 bp):
TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATGATA
Found at i:84821134 original size:16 final size:18
Alignment explanation
Indices: 84821102--84821135 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
84821092 GAACTCATCA
84821102 TACTATCTATCGTTTTGG
1 TACTATCTATCGTTTTGG
84821120 TACTAT-TAT-GTTTTGG
1 TACTATCTATCGTTTTGG
84821136 AATTCGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 3 0.19
18 6 0.38
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.53
Consensus pattern (18 bp):
TACTATCTATCGTTTTGG
Found at i:84825729 original size:40 final size:39
Alignment explanation
Indices: 84825684--84825868 Score: 198
Period size: 39 Copynumber: 4.7 Consensus size: 39
84825674 CTACTTGCTC
*
84825684 AATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCACACA
1 AATGCCTTCGGGACTTAG-CCCGGTTATA-TAACTCGCACA
*
84825724 AATGCCTTCGGGACTTAGCCCGGTTCA-ATAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGTT-ATATAACTCGCACA
*
84825763 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTAT-ATAACTCGCACA
* * * * *
84825803 ATTGCCTTCGGG-TTTAGCCCGGAATTA-GTCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGG--TTATATAACTCGCACA
* *
84825842 AATGTCTTCGGGATTTAGCCCGGTTAT
1 AATGCCTTCGGGACTTAGCCCGGTTAT
84825869 CATCCGAATA
Statistics
Matches: 125, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
38 4 0.03
39 61 0.49
40 56 0.45
41 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGTTATATAACTCGCACA
Found at i:84825851 original size:79 final size:79
Alignment explanation
Indices: 84825684--84825864 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 79
84825674 CTACTTGCTC
* *
84825684 AATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGT
1 AATGCCTTCGGGACTTAG-CCCGGATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGT
* *
84825748 TCAATAACTCGCACC
65 TCAATAACTAGCACA
* * *
84825763 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGG-TTTAGCCCGGAA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGG--
* *
84825827 TT-AGTCACTAGCACA
64 TTCAATAACTAGCACA
* *
84825842 AATGTCTTCGGGATTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
84825865 TTATCATCCG
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
78 9 0.10
79 76 0.86
80 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGTT
CAATAACTAGCACA
Found at i:84829112 original size:27 final size:27
Alignment explanation
Indices: 84829078--84829249 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
84829068 TGGATAAGTT
** *
84829078 GTAGAATTACTAAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
84829105 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
84829132 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
84829159 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
84829186 GTAGAAATACTGAAATACTCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
84829213 GTAGAATTATCGAGATACCCTTGT-GG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
84829239 GTAAAATTACC
1 GTAGAATTACC
84829250 ATTTTGCCCC
Statistics
Matches: 125, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 11 0.09
27 114 0.91
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:84829947 original size:26 final size:26
Alignment explanation
Indices: 84829900--84829950 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
84829890 CTCGCTGCAA
*
84829900 TCTGGTGGCTCGCCACATATATCTGT
1 TCTGGTGACTCGCCACATATATCTGT
*
84829926 TCTGGTGACTTCGTCACA-ATATCTG
1 TCTGGTGAC-TCGCCACATATATCTG
84829951 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
TCTGGTGACTCGCCACATATATCTGT
Found at i:84830017 original size:71 final size:66
Alignment explanation
Indices: 84829881--84830020 Score: 154
Period size: 71 Copynumber: 2.0 Consensus size: 66
84829871 GAGGAAGCGT
* * * * *
84829881 TCTGGTAGCCTCGCTGCAATCTGGTGGCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAAT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTCGCCACATATATCTGTCCTGGTGACCTAGCCACAAT
84829946 A
66 A
* * * *
84829947 TCTGGCAGCCTCGCTGCAATCTGGTTGGTTTGCCACATATATATATTTGTCCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGG-TGGCTCGCCAC----ATATATCTGTCCTGGTGACCTAGCC
84830012 ACAATA
61 ACAATA
84830018 TCT
1 TCT
84830021 ATATCTGGTG
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
66 23 0.38
67 9 0.15
71 28 0.47
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (66 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTCGCCACATATATCTGTCCTGGTGACCTAGCCACAAT
A
Found at i:84836619 original size:27 final size:27
Alignment explanation
Indices: 84836585--84836756 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
84836575 TGGATAAGTT
* *
84836585 GTAGAATTACTAAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
84836612 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
84836639 GTAGAATTA-TCGAAATACCCCTATAGG
1 GTAGAATTACT-GAAATACCCCTGTAGG
* * *
84836666 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
84836693 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
84836720 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
84836747 GTAAAATTAC
1 GTAGAATTAC
84836757 CATTTTGCCC
Statistics
Matches: 125, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:84838809 original size:13 final size:13
Alignment explanation
Indices: 84838791--84838820 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
84838781 GCTCAGCAGG
84838791 GACACGCCCGTGT
1 GACACGCCCGTGT
*
84838804 GACACGGCCGTGT
1 GACACGCCCGTGT
84838817 GACA
1 GACA
84838821 TGATTGCCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.33, G:0.33, T:0.13
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:84843296 original size:21 final size:21
Alignment explanation
Indices: 84843256--84843362 Score: 119
Period size: 21 Copynumber: 5.2 Consensus size: 21
84843246 CAAATATGCC
*
84843256 AACAAAAGCTCA-AA-AGCTG
1 AACAGAAGCTCATAAGAGCTG
*
84843275 AACAGAAGCTTATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
* * * *
84843296 AATAGAAACTCGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTG
84843317 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
* **
84843338 AATAGAAGCTTGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
84843359 AACA
1 AACA
84843363 AAAAGTAAAA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
19 10 0.14
20 2 0.03
21 59 0.83
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:84843334 original size:42 final size:42
Alignment explanation
Indices: 84843270--84843362 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
84843260 AAAGCTCAAA
*
84843270 AGCTGAACAGAAGCTTATAAGAGCTGAATAGAAACTCGTAAG
1 AGCTGAACAGAAGCTCATAAGAGCTGAATAGAAACTCGTAAG
* * *
84843312 AGCTAAACAGAAGCTCATAAGAGCTGAATAGAAGCTTGTAAG
1 AGCTGAACAGAAGCTCATAAGAGCTGAATAGAAACTCGTAAG
84843354 AGCTGAACA
1 AGCTGAACA
84843363 AAAAGTAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.18
Consensus pattern (42 bp):
AGCTGAACAGAAGCTCATAAGAGCTGAATAGAAACTCGTAAG
Found at i:84846097 original size:40 final size:40
Alignment explanation
Indices: 84845872--84846097 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
84845862 GCTCCTCGTT
* * *
84845872 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
** *
84845912 CAAATGCCTTTAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
*
84845952 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
* *
84845992 CCAATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATA-TAGTAACTCGCA
* ** * * *
84846032 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TCGCA
*
84846073 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
84846098 CATCATTCAA
Statistics
Matches: 160, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 145 0.91
41 12 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
Found at i:84849886 original size:17 final size:18
Alignment explanation
Indices: 84849856--84849889 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
84849846 TGTGACGATG
*
84849856 CTTCAACGATCTTCCAAC
1 CTTCAACGAGCTTCCAAC
84849874 CTTC-ACGAGCTTCCAA
1 CTTCAACGAGCTTCCAA
84849890 GCACTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.26, C:0.38, G:0.09, T:0.26
Consensus pattern (18 bp):
CTTCAACGAGCTTCCAAC
Found at i:84854068 original size:47 final size:47
Alignment explanation
Indices: 84854009--84854140 Score: 151
Period size: 47 Copynumber: 2.8 Consensus size: 47
84853999 TCTAAATTGA
* * *
84854009 TAAGTACATATACCATGACCCGTAGCCAAATCAAGGTAACTTATCTC
1 TAAGTACCTATACCATGACTCGTAGCCAAATCAAGGTAACTCATCTC
* *
84854056 -AGAGTACCTATACCAT-AGCTCGTAGCCAAATTAAGGTAACTCCTCTC
1 TA-AGTACCTATACCATGA-CTCGTAGCCAAATCAAGGTAACTCATCTC
* * **
84854103 TAAATACCTATACCATGTCTTATAGCCAAATCAAGGTA
1 TAAGTACCTATACCATGACTCGTAGCCAAATCAAGGTA
84854141 TTATTCGCAC
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
46 2 0.03
47 68 0.96
48 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.27
Consensus pattern (47 bp):
TAAGTACCTATACCATGACTCGTAGCCAAATCAAGGTAACTCATCTC
Found at i:84858931 original size:120 final size:121
Alignment explanation
Indices: 84858769--84858990 Score: 322
Period size: 122 Copynumber: 1.8 Consensus size: 121
84858759 CACAATAACA
* **
84858769 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTTTTCCTAAT-CTCAATTTAACACGGAATG
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTCAATTTAACACAAAATG
* *
84858833 TATGATAACTAACTTACGAATGCAAATTAAATGATATACATTGGTATGGTAATAGC
66 TATGATAACTAACCTAAGAATGCAAATTAAATGATATACATTGGTATGGTAATAGC
* * * **
84858889 ATGAGAATAA-ACATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTAATTTATTACAAAA
1 ATGAGAATAAGA-ATAGAAATGTAATGGGTATGAGGTGTTCCTAAT-ACTCAATTTAACACAAAA
84858953 TGTATGATAACTAACCTAAGAATGCAAATTAAATGATA
64 TGTATGATAACTAACCTAAGAATGCAAATTAAATGATA
84858991 GAAAATGAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
119 1 0.01
120 40 0.45
122 48 0.54
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (121 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTCAATTTAACACAAAATG
TATGATAACTAACCTAAGAATGCAAATTAAATGATATACATTGGTATGGTAATAGC
Found at i:84871291 original size:28 final size:28
Alignment explanation
Indices: 84871259--84871336 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
84871249 AATCATTCGG
* *
84871259 TATTTCGCTCATTAAGTGCCATTCTCAA
1 TATTTCGCACACTAAGTGCCATTCTCAA
* *
84871287 TATTTTGCACACTAAGTGTCATTCTCAA
1 TATTTCGCACACTAAGTGCCATTCTCAA
* *
84871315 TATTTCCCACACTAAGTTCCAT
1 TATTTCGCACACTAAGTGCCAT
84871337 ATTTGATGTC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.38
Consensus pattern (28 bp):
TATTTCGCACACTAAGTGCCATTCTCAA
Found at i:84880046 original size:18 final size:18
Alignment explanation
Indices: 84880009--84880050 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
84879999 AAGTCAAATT
84880009 GGGCAGTGTGGGCCACAC
1 GGGCAGTGTGGGCCACAC
*
84880027 GGGC-GTGTGGGCCCATAC
1 GGGCAGTGTGGG-CCACAC
84880045 GGGCAG
1 GGGCAG
84880051 GGCACACAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 13 0.62
19 1 0.05
ACGTcount: A:0.14, C:0.26, G:0.48, T:0.12
Consensus pattern (18 bp):
GGGCAGTGTGGGCCACAC
Found at i:84887182 original size:27 final size:27
Alignment explanation
Indices: 84887152--84887329 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
84887142 ATATTGAGTC
* *
84887152 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
84887179 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84887206 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* ** ** *
84887234 CGCACAGTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
84887261 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
84887288 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84887315 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
84887330 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:84887291 original size:82 final size:81
Alignment explanation
Indices: 84887173--84887328 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
84887163 TGCTATATAA
* *
84887173 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
*
84887238 CAGTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
84887255 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
*
84887319 CCCTTAGTGC
65 CACTTAGTGC
84887329 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 14 0.22
82 51 0.78
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:84892124 original size:27 final size:27
Alignment explanation
Indices: 84892094--84892271 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
84892084 ATATTGAGTC
* *
84892094 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
84892121 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84892148 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
84892176 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
84892203 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
84892230 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84892257 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
84892272 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:84892233 original size:82 final size:81
Alignment explanation
Indices: 84892115--84892270 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
84892105 TGCTATATAA
* *
84892115 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
84892180 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
84892197 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
*
84892261 CCCTTAGTGC
65 CACTTAGTGC
84892271 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:84892254 original size:54 final size:54
Alignment explanation
Indices: 84892094--84892270 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
84892084 ATATTGAGTC
* * * *
84892094 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
84892148 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
84892203 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
84892257 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
84892271 TGTACAATTT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
54 56 0.54
55 45 0.44
56 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:84894059 original size:45 final size:45
Alignment explanation
Indices: 84894005--84894100 Score: 174
Period size: 45 Copynumber: 2.1 Consensus size: 45
84893995 TTCTCTGTCG
*
84894005 TTTCTTCCTCTTCCAAACCATTGCTACTGAAATTCTTTTCTTTTC
1 TTTCTTCCTCTTCCAAACCATTGCTACCGAAATTCTTTTCTTTTC
*
84894050 TTTCTTCCTCTTCCAAACCCTTGCTACCGAAATTCTTTTCTTTTC
1 TTTCTTCCTCTTCCAAACCATTGCTACCGAAATTCTTTTCTTTTC
84894095 TTTCTT
1 TTTCTT
84894101 TTTCCTTCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.16, C:0.30, G:0.04, T:0.50
Consensus pattern (45 bp):
TTTCTTCCTCTTCCAAACCATTGCTACCGAAATTCTTTTCTTTTC
Found at i:84894124 original size:16 final size:16
Alignment explanation
Indices: 84894085--84894130 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
84894075 ACCGAAATTC
84894085 TTTTCTT-TTCTTTCT
1 TTTTCTTCTTCTTTCT
84894100 TTTTCCTTCTTC-TTCGT
1 TTTT-CTTCTTCTTTC-T
*
84894117 TTTTCTTCTCCTTT
1 TTTTCTTCTTCTTT
84894131 GATTTTCTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 4 0.15
16 12 0.46
17 10 0.38
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (16 bp):
TTTTCTTCTTCTTTCT
Found at i:84896583 original size:27 final size:27
Alignment explanation
Indices: 84896553--84896731 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
84896543 ATATTGAGCC
* * * *
84896553 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
84896580 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
84896607 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
84896635 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* *
84896662 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
84896689 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
84896716 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
84896732 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:84896692 original size:82 final size:81
Alignment explanation
Indices: 84896579--84896729 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
84896569 TATAATCATC
* *
84896579 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
84896644 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
84896661 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
84896725 AGTGC
65 AGTGC
84896730 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:84897297 original size:13 final size:13
Alignment explanation
Indices: 84897279--84897303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84897269 TACTAAATTT
84897279 TCATGGATTCAAG
1 TCATGGATTCAAG
84897292 TCATGGATTCAA
1 TCATGGATTCAA
84897304 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:84909800 original size:13 final size:13
Alignment explanation
Indices: 84909782--84909806 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84909772 TAATGGTATA
84909782 TTGAATCCATGAC
1 TTGAATCCATGAC
84909795 TTGAATCCATGA
1 TTGAATCCATGA
84909807 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:84910412 original size:27 final size:27
Alignment explanation
Indices: 84910353--84910529 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
84910343 TAAATTGTAC
84910353 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
84910379 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
84910405 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
84910433 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
84910461 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
84910488 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
84910515 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84910530 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
26 14 0.11
27 92 0.71
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:84910466 original size:82 final size:80
Alignment explanation
Indices: 84910354--84910508 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
84910344 AAATTGTACA
* *
84910354 GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
84910418 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
84910434 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
84910499 TGCGAGTTGA
64 TGCGAATTGA
84910509 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:84910520 original size:82 final size:80
Alignment explanation
Indices: 84910350--84910529 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 80
84910340 GATTAAATTG
* *
84910350 TACAGCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
84910415 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
84910430 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84910494 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
84910512 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84910530 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 17 0.20
81 1 0.01
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:84910540 original size:27 final size:27
Alignment explanation
Indices: 84910434--84910540 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
84910424 TGACCATGCG
* * * *
84910434 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
84910462 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
84910489 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
84910516 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
84910541 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:84912657 original size:44 final size:46
Alignment explanation
Indices: 84912608--84912702 Score: 151
Period size: 44 Copynumber: 2.1 Consensus size: 46
84912598 GAAGAAGGAA
*
84912608 AAGAAAAG-AAAGAAAAGAATTTCGGTAGCAAGGGTTTGGAAGA-G
1 AAGAAAAGAAAAGAAAAGAATTTCAGTAGCAAGGGTTTGGAAGAGG
*
84912652 AAG-AAAGAAAAGAAAAGAATTTCAGTAGCAATGGTTTGGAAGAGG
1 AAGAAAAGAAAAGAAAAGAATTTCAGTAGCAAGGGTTTGGAAGAGG
84912697 AAGAAA
1 AAGAAA
84912703 CGACAGAGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 4 0.09
44 36 0.78
45 4 0.09
46 2 0.04
ACGTcount: A:0.51, C:0.04, G:0.29, T:0.16
Consensus pattern (46 bp):
AAGAAAAGAAAAGAAAAGAATTTCAGTAGCAAGGGTTTGGAAGAGG
Found at i:84927305 original size:27 final size:27
Alignment explanation
Indices: 84927275--84927453 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
84927265 ATATTGAGCC
* * * *
84927275 CGCACACTCAATGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAATCAACT
* *
84927302 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84927329 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
84927357 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
84927384 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
84927411 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAATCA-ACT
84927438 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
84927454 TACAATTTAA
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:84927416 original size:82 final size:81
Alignment explanation
Indices: 84927301--84927451 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
84927291 TATAATCATC
* *
84927301 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
84927366 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
84927383 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
84927447 AGTGC
65 AGTGC
84927452 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:84928017 original size:13 final size:13
Alignment explanation
Indices: 84927999--84928023 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84927989 TACTAAATTT
84927999 TCATGGATTCAAG
1 TCATGGATTCAAG
84928012 TCATGGATTCAA
1 TCATGGATTCAA
84928024 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:84937269 original size:26 final size:26
Alignment explanation
Indices: 84937240--84937344 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
84937230 TGGTACAAAT
84937240 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
84937266 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84937292 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
84937318 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84937344 T
1 T
84937345 TATGGGCATT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:84947859 original size:49 final size:50
Alignment explanation
Indices: 84947779--84947964 Score: 230
Period size: 49 Copynumber: 3.7 Consensus size: 50
84947769 ATCCATTGCG
* *
84947779 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
84947829 -GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGTGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * * **
84947879 CGATCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
84947929 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATG
84947965 CATACAGTGC
Statistics
Matches: 113, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 42 0.37
50 35 0.31
51 36 0.32
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:84948067 original size:122 final size:122
Alignment explanation
Indices: 84947850--84948087 Score: 424
Period size: 122 Copynumber: 2.0 Consensus size: 122
84947840 TAGTACTAAA
* * *
84947850 TGCAGGCTACTATGTGTACCCGATAACTTCGATCATGTGTGTAGTACTAAGTGCAAGCTACTACG
1 TGCAGGCTACTATGCGTACCCGATAACTTCGATCATGTGTGTAATACTAAGTGCAAGCTACGACG
84947915 TGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACAG
66 TGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACAG
*
84947972 TGCAGGCTACTATGCGTACCCGATAACTTCGATCACT-TGTGTAATACTAAGTGCAGGCTACGAC
1 TGCAGGCTACTATGCGTACCCGATAACTTCGATCA-TGTGTGTAATACTAAGTGCAAGCTACGAC
84948036 GTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGC
65 GTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGC
84948088 GTACTAGATA
Statistics
Matches: 111, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
122 110 0.99
123 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (122 bp):
TGCAGGCTACTATGCGTACCCGATAACTTCGATCATGTGTGTAATACTAAGTGCAAGCTACGACG
TGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACAG
Found at i:84948293 original size:50 final size:50
Alignment explanation
Indices: 84948121--84948361 Score: 295
Period size: 50 Copynumber: 4.8 Consensus size: 50
84948111 GTGTGAAAAT
* * *
84948121 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * * * * * *
84948170 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATTAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTTAGGTCAC
* * *
84948221 ATGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * * *
84948271 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* *
84948321 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
84948362 CTTTGGCTAC
Statistics
Matches: 164, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
49 36 0.22
50 91 0.55
51 37 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
Found at i:84948327 original size:24 final size:24
Alignment explanation
Indices: 84948249--84948327 Score: 58
Period size: 24 Copynumber: 3.2 Consensus size: 24
84948239 AGGCTACTAC
*
84948249 GTGTATCAGATGGTTAGGTCACGT
1 GTGTATCAGATGGTTAGGTCACAT
*
84948273 GTGTAGTACTA-A--GTGTAGG-CTACTAC
1 GTGTA-T-C-AGATGGT-TAGGTC-AC-AT
84948299 GTGTATCAGATGGTTAGGTCACAT
1 GTGTATCAGATGGTTAGGTCACAT
84948323 GTGTA
1 GTGTA
84948328 GTACTAAGTG
Statistics
Matches: 42, Mismatches: 3, Indels: 20
0.65 0.05 0.31
Matches are distributed among these distances:
23 1 0.02
24 16 0.38
25 14 0.33
26 10 0.24
27 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (24 bp):
GTGTATCAGATGGTTAGGTCACAT
Found at i:84952261 original size:13 final size:13
Alignment explanation
Indices: 84952222--84952255 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
84952212 TTTATGGTCT
84952222 ATGATTTCACGAA
1 ATGATTTCACGAA
84952235 ATGATTTCACGAA
1 ATGATTTCACGAA
84952248 ATGATTTC
1 ATGATTTC
84952256 TTGAAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (13 bp):
ATGATTTCACGAA
Found at i:84953064 original size:50 final size:49
Alignment explanation
Indices: 84952896--84953226 Score: 333
Period size: 50 Copynumber: 6.6 Consensus size: 49
84952886 AATTGTGAGT
* * * *
84952896 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTA-CTGGATAATTTG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATAATTGG
* * * * * * *
84952945 TCACATGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAA-TT-GG
* **
84952996 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GG
* * * * * * *
84953046 TCATGTGTGTAGTACTAAGTGCAGGCTACTATGCGCACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAA-TT-GG
* **
84953097 TCACGTGTGTAGTACTAAGTGCAGGCTACGACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GG
*
84953147 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGG
* *
84953196 TC-GGATGTGTAGTACTAAATGCAGGCTACTA
1 TCACG-TGTGTAGTACTAAGTGCAGGCTACTA
84953227 TGCGTACCAG
Statistics
Matches: 231, Mismatches: 46, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
48 1 0.00
49 65 0.28
50 90 0.39
51 75 0.32
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGG
Found at i:84953078 original size:101 final size:99
Alignment explanation
Indices: 84952896--84953550 Score: 621
Period size: 101 Copynumber: 6.4 Consensus size: 99
84952886 AATTGTGAGT
* * ** ** * * *
84952896 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACTGGATAATT-TGTCACATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTAC
* * * *
84952960 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 TAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GG
* * *
84952996 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTAC
* * * * *
84953061 TAAGTGCAGGCTACTATGCGCACCCGATAACTTCGA
66 TAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GG
* *
84953097 TCACGTGTGTAGTACTAAGTGCAGGCTACGACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTAC
* *
84953162 TAAGTGCAGGCTACTACGTGTATCGGATAATTGG
66 TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
* * * * * * *
84953196 TC-GGATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAA
1 TCACG-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGG-T-C-A---CG--
* *
84953260 AATATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGG
56 ----TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGG
* * * * * ** * * *
84953308 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGGTCACGTGTGTAGTA
* *
84953373 CTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGG
65 CTAAGTGCAGGCTACTACGTGTACCAGATAATT-GG
* * *
84953409 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTAC
*
84953474 TAAGTGCAGGCTACTACGTGTATCAGATAATTGG
66 TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
* * * * *
84953508 TCGCATGTGTAATACTAAGTGCAAGCTACTATGTGTACCAGAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
84953551 AGCTTTTGCT
Statistics
Matches: 472, Mismatches: 66, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
98 1 0.00
99 75 0.16
100 132 0.28
101 175 0.37
102 1 0.00
103 1 0.00
106 1 0.00
109 1 0.00
110 1 0.00
111 1 0.00
112 83 0.18
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
Found at i:84953380 original size:262 final size:264
Alignment explanation
Indices: 84953001--84953489 Score: 777
Period size: 262 Copynumber: 1.9 Consensus size: 264
84952991 TTCGATCATG
* * * ** **
84953001 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTAGGTCACATGTGTAGTACTAAGT
*
84953066 GCAGGCTACTATGCGCACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACGACGT
66 GCAGGCTACTATGCGCACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACGACGT
* * *
84953131 GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT-G
131 GTATCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTAG
*
84953195 GTC-GGATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGA
196 GTCACG-TGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGA
84953259 AAATA
260 AAATA
*
84953264 TGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATT-GGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTAGGTCACATGTGTAGTACTAAGT
* *
84953328 GCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACGT
66 GCAGGCTACTATGCGCACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACGACGT
* **
84953393 GTATCAGATAGTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAG
131 GTATCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTAG
*
84953458 GTCACGTGTGTAGTACTAAGTGCAGGCTACTA
196 GTCACGTGTGTAGTACTAAATGCAGGCTACTA
84953490 CGTGTATCAG
Statistics
Matches: 205, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
262 138 0.67
263 66 0.32
264 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (264 bp):
TGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTAGGTCACATGTGTAGTACTAAGT
GCAGGCTACTATGCGCACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACGACGT
GTATCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTAG
GTCACGTGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAA
AATA
Found at i:84953435 original size:50 final size:49
Alignment explanation
Indices: 84953263--84953552 Score: 364
Period size: 50 Copynumber: 5.8 Consensus size: 49
84953253 GTGTGAAAAT
* * * *
84953263 ATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCAC
* * * * *
84953312 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT-GGTCAC
*
84953363 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GGTCAC
* * *
84953413 ATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GGTCAC
* * * *
84953463 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCAC
* * *
84953512 ATGTGTAATACTAAGTGCAAGCTACTATGTGTACCAGATAG
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
84953553 CTTTTGCTAC
Statistics
Matches: 211, Mismatches: 28, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
49 74 0.35
50 98 0.46
51 39 0.18
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (49 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCAC
Found at i:84953469 original size:100 final size:100
Alignment explanation
Indices: 84953263--84953551 Score: 409
Period size: 100 Copynumber: 2.9 Consensus size: 100
84953253 GTGTGAAAAT
* * *
84953263 ATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACTAAGT
* * *
84953328 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTATGTGTACCAGATAACTTAGATCAC
* *
84953363 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACATGTGTAGTACTAAG
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCGCATGTGTAGTACTAAG
* * * ** *
84953428 TGTAGGCTACTACGTGTATCAGAT-GGTTAGGTCAC
65 TGCAGGCTACTATGTGTACCAGATAACTTAGATCAC
* *
84953463 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAATACTAAGT
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACTAAGT
*
84953528 GCAAGCTACTATGTGTACCAGATA
66 GCAGGCTACTATGTGTACCAGATA
84953552 GCTTTTGCTA
Statistics
Matches: 165, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
99 39 0.24
100 87 0.53
101 39 0.24
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (100 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACTAAGT
GCAGGCTACTATGTGTACCAGATAACTTAGATCAC
Found at i:84953566 original size:312 final size:312
Alignment explanation
Indices: 84953001--84953579 Score: 890
Period size: 312 Copynumber: 1.9 Consensus size: 312
84952991 TTCGATCATG
* * ** * **
84953001 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATACTTAGATCACATGTGTAGTACTAAGT
* * * *
84953066 GCAGGCTACTATGCGCACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACGACGT
66 GCAGGCTACTACGCGCACCAGATAACTTAGATCACATGTGTAGTACTAAGTGCAGGCTACGACGT
*
84953131 GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGG
131 GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGG
* * *
84953196 TCGGATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAAA
196 TCGCATGTGTAATACTAAATGCAAGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAAA
84953261 ATATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCA
261 ATATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCA
* * *
84953313 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT-ACTTAGATCACATGTGTAGTACTAAG
* * * * * * *
84953378 TGCAGGCTACTACGTGTATCAGAT-AGTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACG
65 TGCAGGCTACTACGCGCACCAGATAACTTAGATCACATGTGTAGTACTAAGTGCAGGCTACGACG
84953442 TGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTG
130 TGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTG
* * *
84953507 GTCGCATGTGTAATACTAAGTGCAAGCTACTATGTGTACCAGATAGCTTTTGCTACAAGTGTGAA
195 GTCGCATGTGTAATACTAAATGCAAGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAA
84953572 AATATGTG
260 AATATGTG
84953580 CAGGCAACTG
Statistics
Matches: 238, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
312 199 0.84
313 39 0.16
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (312 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATACTTAGATCACATGTGTAGTACTAAGT
GCAGGCTACTACGCGCACCAGATAACTTAGATCACATGTGTAGTACTAAGTGCAGGCTACGACGT
GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGG
TCGCATGTGTAATACTAAATGCAAGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAAA
ATATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCA
Found at i:84954956 original size:15 final size:15
Alignment explanation
Indices: 84954938--84954968 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
84954928 TAATAAATCC
84954938 ATTATTAACCAATTT
1 ATTATTAACCAATTT
*
84954953 ATTATTAACCGATTT
1 ATTATTAACCAATTT
84954968 A
1 A
84954969 CATATTTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.03, T:0.45
Consensus pattern (15 bp):
ATTATTAACCAATTT
Found at i:84958546 original size:37 final size:37
Alignment explanation
Indices: 84958488--84958595 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
84958478 TAGCTCGAAT
* *
84958488 AATCCCCACACGTAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
84958525 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
84958562 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
84958596 ATATATTTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:84958794 original size:48 final size:48
Alignment explanation
Indices: 84958736--84958977 Score: 385
Period size: 48 Copynumber: 5.0 Consensus size: 48
84958726 TTACACACAC
* * *
84958736 ATCTCCTACATATTTCACATTAGTCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
84958784 ATCTCATACATACTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
84958832 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
84958880 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
84958928 ATCTCATACATATTTAACATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
84958976 AT
1 AT
84958978 TTATCTTGTA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 178 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:84973088 original size:15 final size:16
Alignment explanation
Indices: 84973068--84973100 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
84973058 TATATATTTT
84973068 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
84973083 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
84973100 T
1 T
84973101 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:84973173 original size:21 final size:22
Alignment explanation
Indices: 84973147--84973205 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
84973137 GTTTTAAGAA
*
84973147 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
84973168 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
84973190 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
84973206 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:84973220 original size:26 final size:24
Alignment explanation
Indices: 84973176--84973225 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
84973166 ATTTGTTTTA
*
84973176 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
84973200 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
84973226 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:84977473 original size:157 final size:157
Alignment explanation
Indices: 84977263--84977575 Score: 572
Period size: 157 Copynumber: 2.0 Consensus size: 157
84977253 GTTTTTGGAA
* *
84977263 ATGACATTGCAATGATCTGGACTTTTGTTTGCCTTCAAAAGCATTGAATTGAGATGCAAGCATGT
1 ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
84977328 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
66 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
**
84977393 TTTAGTTTGGTTAGATGTTCTCTTTAG
131 TTTAGTTTGGTTAGACATTCTCTTTAG
*
84977420 ATGACATTGCAATGTTCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
1 ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
*
84977485 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTTGTATCATTCTCTGCATCA
66 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
84977550 TTTAGTTTGGTTAGACATTCTCTTTA
131 TTTAGTTTGGTTAGACATTCTCTTTA
84977576 TATTACTCAA
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 150 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.39
Consensus pattern (157 bp):
ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
TTTAGTTTGGTTAGACATTCTCTTTAG
Found at i:84978290 original size:22 final size:22
Alignment explanation
Indices: 84978265--84978308 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
84978255 TAGTCATATA
84978265 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* *
84978287 ATAAATTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
84978309 TATTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:84978344 original size:13 final size:14
Alignment explanation
Indices: 84978328--84978369 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
84978318 TTTCAATTTT
84978328 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
84978341 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
84978356 ATTTTAAATAATAT
1 ATTTT-AATAATAT
84978370 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:84978354 original size:16 final size:16
Alignment explanation
Indices: 84978332--84978368 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
84978322 AATTTTATTT
84978332 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
84978349 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
84978364 TAATA
1 TAATA
84978369 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:84978421 original size:15 final size:15
Alignment explanation
Indices: 84978401--84978458 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
84978391 ATTCAATATT
84978401 AATATTTTAATAATA
1 AATATTTTAATAATA
*
84978416 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
84978435 AATATATTAATAATA
1 AATATTTTAATAATA
*
84978450 AATGTTTTA
1 AATATTTTA
84978459 TCGTATAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:84979862 original size:16 final size:16
Alignment explanation
Indices: 84979843--84979897 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
84979833 TAACAAAGTA
84979843 TAAAAAATACATTTTT
1 TAAAAAATACATTTTT
84979859 TAAAAAGAT--ATTTATT
1 TAAAAA-ATACATTT-TT
*
84979875 ATAAAAATTACATTTTT
1 -TAAAAAATACATTTTT
84979892 TAAAAA
1 TAAAAA
84979898 GATATTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
15 4 0.12
16 15 0.45
17 10 0.30
18 4 0.12
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (16 bp):
TAAAAAATACATTTTT
Found at i:84979864 original size:17 final size:17
Alignment explanation
Indices: 84979844--84979897 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
84979834 AACAAAGTAT
84979844 AAAAAATACATTTTTTA
1 AAAAAATACATTTTTTA
* *
84979861 AAAAGAT--ATTTATTA
1 AAAAAATACATTTTTTA
*
84979876 TAAAAATTACATTTTTTA
1 -AAAAAATACATTTTTTA
84979894 AAAA
1 AAAA
84979898 GATATTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 7 0.24
16 5 0.17
17 10 0.34
18 7 0.24
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (17 bp):
AAAAAATACATTTTTTA
Found at i:84979871 original size:15 final size:15
Alignment explanation
Indices: 84979853--84979904 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
84979843 TAAAAAATAC
84979853 ATTTTTTAAAAAGAT
1 ATTTTTTAAAAAGAT
* *
84979868 ATTTATTATAAAAATTAC
1 ATTT-TT-TAAAAA-GAT
84979886 ATTTTTTAAAAAGAT
1 ATTTTTTAAAAAGAT
84979901 ATTT
1 ATTT
84979905 ATTCTTTCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
15 9 0.30
16 8 0.27
17 8 0.27
18 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (15 bp):
ATTTTTTAAAAAGAT
Found at i:84979879 original size:33 final size:33
Alignment explanation
Indices: 84979841--84979907 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
84979831 ATTAACAAAG
84979841 TATAAAAAATACATTTTTTAAAAAGATATTTAT
1 TATAAAAAATACATTTTTTAAAAAGATATTTAT
*
84979874 TATAAAAATTACATTTTTTAAAAAGATATTTAT
1 TATAAAAAATACATTTTTTAAAAAGATATTTAT
84979907 T
1 T
84979908 CTTTCCTCTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (33 bp):
TATAAAAAATACATTTTTTAAAAAGATATTTAT
Found at i:84980555 original size:1 final size:1
Alignment explanation
Indices: 84980551--84980580 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
84980541 ATAGTCCTGG
84980551 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
84980581 GCTGTAGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:84982082 original size:22 final size:23
Alignment explanation
Indices: 84982057--84982116 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
84982047 TGGACTGAAT
84982057 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
84982079 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
84982101 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
84982117 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:84982084 original size:4 final size:4
Alignment explanation
Indices: 84982066--84982099 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
84982056 TATAAAAATT
84982066 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
84982100 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:84983512 original size:18 final size:18
Alignment explanation
Indices: 84983491--84983529 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
84983481 TTTCTTCAAC
* *
84983491 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
84983509 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
84983527 TTC
1 TTC
84983530 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:84985885 original size:22 final size:23
Alignment explanation
Indices: 84985860--84985919 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
84985850 TGGACTGAAT
84985860 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
84985882 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
84985904 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
84985920 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:84985887 original size:4 final size:4
Alignment explanation
Indices: 84985869--84985902 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
84985859 TATAAAAATT
84985869 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
84985903 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:84992130 original size:17 final size:19
Alignment explanation
Indices: 84992108--84992145 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
84992098 TTTTTTGCAT
*
84992108 TTTTTAA-AAATA-AATTA
1 TTTTTAATAAACATAATTA
84992125 TTTTTAATAAACATAATTA
1 TTTTTAATAAACATAATTA
84992144 TT
1 TT
84992146 CATTTTCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 4 0.22
19 7 0.39
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTTTAATAAACATAATTA
Found at i:84992483 original size:6 final size:7
Alignment explanation
Indices: 84992466--84992490 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
84992456 CCATGCCAGC
84992466 AAAAAAT
1 AAAAAAT
84992473 AAAAAAT
1 AAAAAAT
84992480 AAAAAAT
1 AAAAAAT
84992487 AAAA
1 AAAA
84992491 TTCTTTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Done.