Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 255 of 344
Found at i:84992695 original size:18 final size:18
Alignment explanation
Indices: 84992635--84992696 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
84992625 AAATTACAAA
*
84992635 AAAAGTATTAAAAAATAATT
1 AAAA-TATT-AAAATTAATT
* * *
84992655 AAAATAATAAATTTTA-T
1 AAAATATTAAAATTAATT
84992672 AGAAATATTAAAATTAATT
1 A-AAATATTAAAATTAATT
84992691 AAAATA
1 AAAATA
84992697 ATATAAAGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 2 0.06
18 22 0.67
19 5 0.15
20 4 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AAAATATTAAAATTAATT
Found at i:84993741 original size:18 final size:18
Alignment explanation
Indices: 84993718--84993754 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
84993708 ATTTGTATGT
84993718 AAAAGAAAATTCAAGCAG
1 AAAAGAAAATTCAAGCAG
84993736 AAAAGAAAATTCAAGCAG
1 AAAAGAAAATTCAAGCAG
84993754 A
1 A
84993755 CTTTATTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.11, G:0.16, T:0.11
Consensus pattern (18 bp):
AAAAGAAAATTCAAGCAG
Found at i:84994723 original size:89 final size:89
Alignment explanation
Indices: 84994572--84994758 Score: 311
Period size: 89 Copynumber: 2.1 Consensus size: 89
84994562 GAGGTAGTAT
* * *
84994572 AGATGGAAGAATCACTTATGGAAAGTTTTAGAATGTAAAAGTTTAGCAGTTATGACAACCAAGAC
1 AGATGGAGGAATCACTTATAGAAAGTTTTAGAATGTAAAAGTTTAGCAGCTATGACAACCAAGAC
*
84994637 TCACAAGTTGGAAACAATTATTCG
66 TCACAAGATGGAAACAATTATTCG
*
84994661 AGATGGAGGAATCACTTATAGAAAGTTTTAGAATGTAAAAGTTTAGTAGCTATGACAACCAAGAC
1 AGATGGAGGAATCACTTATAGAAAGTTTTAGAATGTAAAAGTTTAGCAGCTATGACAACCAAGAC
*
84994726 TCACAAGATGGAAACAATTATTCT
66 TCACAAGATGGAAACAATTATTCG
84994750 AGATAGGAG
1 AGAT-GGAG
84994759 CAGGAACTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 87 0.96
90 4 0.04
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (89 bp):
AGATGGAGGAATCACTTATAGAAAGTTTTAGAATGTAAAAGTTTAGCAGCTATGACAACCAAGAC
TCACAAGATGGAAACAATTATTCG
Found at i:85000468 original size:37 final size:37
Alignment explanation
Indices: 85000413--85000515 Score: 152
Period size: 37 Copynumber: 2.8 Consensus size: 37
85000403 CGAATAGTCC
* * * *
85000413 CCACTCGTAGTTAGCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
85000450 CCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
85000487 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
85000516 ATATATTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:85000715 original size:48 final size:48
Alignment explanation
Indices: 85000663--85001089 Score: 723
Period size: 48 Copynumber: 8.9 Consensus size: 48
85000653 CACATCTCCC
* *
85000663 ACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
85000711 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
85000759 ACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
85000807 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
85000855 ATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATATATCTCAT
1 ACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACATATCTCAT
85000903 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
85000951 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
85000999 ATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATATATCTCAT
1 ACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACATATCTCAT
*
85001047 ACATATTTCACACTAGCCATTCGGCTTTACCACATATATATAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
85001090 TTGTCTTGTA
Statistics
Matches: 358, Mismatches: 17, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
47 2 0.01
48 354 0.99
49 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:85004791 original size:40 final size:40
Alignment explanation
Indices: 85004733--85005018 Score: 430
Period size: 40 Copynumber: 7.2 Consensus size: 40
85004723 CCGAATACAC
* * * * *
85004733 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCAGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
85004773 AACACCAGCACGAATGCTCTTCGGGACTTAACCCTGG-TAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCC-GGATAT
* * *
85004813 AACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
85004853 ATCACTAGCACGAATTCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
85004893 ATCACTAGCACGAATGCTTTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
85004933 ATCACTAGCACGAATGCTCTTTGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
85004973 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
85005013 ATCACT
1 ATCACT
85005019 CTCAATTCTC
Statistics
Matches: 225, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 222 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:85006353 original size:37 final size:37
Alignment explanation
Indices: 85006297--85006399 Score: 125
Period size: 37 Copynumber: 2.8 Consensus size: 37
85006287 CGAATAGTCC
* * * *
85006297 CCACTCGTAGTTAGCGGGTCTCACCTGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTCACCCGGACAAAATCT
* * *
85006334 CCACACGTAGTCATTGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTCACCCGGACAAAATCT
* *
85006371 CCTCACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTCACCCGGA
85006400 ATATATTTCC
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTCACCCGGACAAAATCT
Found at i:85006599 original size:48 final size:48
Alignment explanation
Indices: 85006547--85006925 Score: 591
Period size: 48 Copynumber: 7.9 Consensus size: 48
85006537 CACATCTCCC
* * *
85006547 ACATATTTCACATTAGCCATTCGGTTTTACCAAATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
85006595 ACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
85006643 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
85006691 ATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATATATCTCAT
1 ACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACATATCTCAT
85006739 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
85006787 ACATATTTCACACTAGTCATTCGGCTTTACCATATATACATATCTCAA
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
85006835 ATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATATATCTCAT
1 ACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACATATCTCAT
* *
85006883 ACATATTTCACACTAGCCAATCGGCTTTACCACATATATATAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
85006926 TTGTCTTGTA
Statistics
Matches: 304, Mismatches: 23, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 2 0.01
48 300 0.99
49 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:85006701 original size:144 final size:144
Alignment explanation
Indices: 85006549--85006925 Score: 655
Period size: 144 Copynumber: 2.6 Consensus size: 144
85006539 CATCTCCCAC
* * * * *
85006549 ATATTTCACATTAGCCATTCGGTTTTACCAAATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACCTTAGCCATACGGCTTTACCACATATATATATCTCATACATATTTCACACTAGCCA
*
85006614 TTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
*
85006679 TACATATCTCATAT
131 TACATATCTCAAAT
85006693 ATATTTCACCTTAGCCATACGGCTTTACCACATATATATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACCTTAGCCATACGGCTTTACCACATATATATATCTCATACATATTTCACACTAGCCA
* *
85006758 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGTCATTCGGCTTTACCATATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
85006823 TACATATCTCAAAT
131 TACATATCTCAAAT
85006837 ATATTTCACCTTAGCCATACGGCTTTACCACATATATATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACCTTAGCCATACGGCTTTACCACATATATATATCTCATACATATTTCACACTAGCCA
* *
85006902 ATCGGCTTTACCACATATATATAT
66 TTCGGCTTTACCACATATACATAT
85006926 TTGTCTTGTA
Statistics
Matches: 222, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 222 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (144 bp):
ATATTTCACCTTAGCCATACGGCTTTACCACATATATATATCTCATACATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
TACATATCTCAAAT
Found at i:85009834 original size:28 final size:28
Alignment explanation
Indices: 85009794--85009850 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
85009784 TTCTAAGGTA
85009794 AGGGTTTTAGTCGTTTTTCGGGTTATCC
1 AGGGTTTTAGTCGTTTTTCGGGTTATCC
85009822 AGGGTTTTAGTCGTTTTTCGGGTTATCC
1 AGGGTTTTAGTCGTTTTTCGGGTTATCC
85009850 A
1 A
85009851 TTACGGTGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.12, C:0.14, G:0.28, T:0.46
Consensus pattern (28 bp):
AGGGTTTTAGTCGTTTTTCGGGTTATCC
Found at i:85020424 original size:44 final size:46
Alignment explanation
Indices: 85020360--85020448 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 46
85020350 ACCAAATACA
* *
85020360 AATAATTAACAATAAGTACTATGTAATTTAGTT-A-TATTTAGTAT
1 AATAATTAACAATAAATACTATATAATTTAGTTAATTATTTAGTAT
* *
85020404 AATAATTTATAATAAATACTATATAATTTAGTTAATTATTTAGTA
1 AATAATTAACAATAAATACTATATAATTTAGTTAATTATTTAGTA
85020449 GGTTAAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 29 0.74
45 1 0.03
46 9 0.23
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (46 bp):
AATAATTAACAATAAATACTATATAATTTAGTTAATTATTTAGTAT
Found at i:85022921 original size:79 final size:81
Alignment explanation
Indices: 85022819--85023003 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
85022809 ACTCCTCGTT
* *
85022819 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
85022881 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
**
85022899 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
85022963 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
85022979 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85023004 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:85023003 original size:40 final size:40
Alignment explanation
Indices: 85022819--85023003 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
85022809 ACTCCTCGTT
* * *
85022819 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
85022859 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
85022899 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
85022938 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
85022979 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85023004 CATCATTCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 76 0.61
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:85028605 original size:22 final size:21
Alignment explanation
Indices: 85028575--85028640 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
85028565 TACAAATTAA
85028575 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
85028597 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
85028618 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
85028637 ATCT
1 ATCT
85028641 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:85028627 original size:19 final size:19
Alignment explanation
Indices: 85028592--85028689 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
85028582 AGATTACAAG
85028592 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
85028613 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
85028632 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
85028649 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
85028668 ATCATATCTAAGATTGAAT
1 ATCATATCTAAGATTGCAT
85028687 ATC
1 ATC
85028690 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:85028634 original size:14 final size:15
Alignment explanation
Indices: 85028614--85028670 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
85028604 AGATTGCATA
85028614 TCATATCTAAGATTG
1 TCATATCTAAGATTG
85028629 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
85028648 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
85028665 -CATATC
1 TCATATC
85028671 ATATCTAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:85028656 original size:36 final size:37
Alignment explanation
Indices: 85028592--85028689 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
85028582 AGATTACAAG
85028592 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
85028632 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
85028668 ATCATATCTAAGATTGAATATC
1 ATCATATCTAAGATTG-ATATC
85028690 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:85028849 original size:13 final size:11
Alignment explanation
Indices: 85028809--85028841 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
85028799 GACTTGGACT
85028809 TTATTTTATTT-
1 TTATTTT-TTTA
85028820 TTATTTTTTTA
1 TTATTTTTTTA
85028831 TTATTTTTTTA
1 TTATTTTTTTA
85028842 ACTTATTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 3 0.14
11 18 0.86
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
TTATTTTTTTA
Found at i:85031053 original size:47 final size:47
Alignment explanation
Indices: 85030979--85031068 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
85030969 GTAGTAACTG
* *
85030979 TAACGATTTTTTTGGGTAAACACGGTTTTAAATACATTTTCATACTA
1 TAACAATTTTTTTGGGTAAACACGGTTTTAAATACATTCTCATACTA
85031026 TAACAATTTTTTTGGGTAAACACGGTTTTAAATACATTCTCAT
1 TAACAATTTTTTTGGGTAAACACGGTTTTAAATACATTCTCAT
85031069 GTGACTTCGC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.42
Consensus pattern (47 bp):
TAACAATTTTTTTGGGTAAACACGGTTTTAAATACATTCTCATACTA
Found at i:85033748 original size:47 final size:47
Alignment explanation
Indices: 85033682--85034316 Score: 738
Period size: 47 Copynumber: 13.1 Consensus size: 47
85033672 GAAATGATAG
85033682 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85033729 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
85033778 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
85033825 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
85033872 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
85033921 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
85033968 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
85034015 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * *
85034062 TAAGGCCTATATGTGATAAGGCCTAATGGCCGATGTGATGAA-TGTGA-A-A-GTGTA
1 TAAGGCCTA-ATG-GCCGATG--TGAT-G--AATGTGA--AAGTGT-ATATATGTG-A
*** * * *
85034116 TATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTAA
1 TA-A-GGCCTAA---T----GGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
85034172 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85034219 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
85034266 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85034313 TAAG
1 TAAG
85034317 TCCCGAAGGG
Statistics
Matches: 513, Mismatches: 47, Indels: 56
0.83 0.08 0.09
Matches are distributed among these distances:
47 356 0.69
48 2 0.00
49 95 0.19
51 3 0.01
52 1 0.00
53 3 0.01
54 17 0.03
55 10 0.02
56 16 0.03
57 2 0.00
58 1 0.00
59 3 0.01
61 3 0.01
62 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:85033940 original size:143 final size:143
Alignment explanation
Indices: 85033682--85034316 Score: 923
Period size: 143 Copynumber: 4.4 Consensus size: 143
85033672 GAAATGATAG
* *
85033682 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
85033747 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
85033812 TGTATATGTGTGA
131 TGTATATATGTGA
*
85033825 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
85033890 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
85033955 TGCATATGTGTGA
131 TGTATATATGTGA
*
85033968 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
85034033 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTATATGTGATAAGGCCTAATGGCCGATGT
66 GTGATGAATGTGAAA--G------TGT-AT-A----TATATGTGATAAGGCCTAATGGCCGATGT
*
85034098 GATGAATGTGAAAGTGTATATATGTAA
117 GATGAATGTGAAAGTGTATATATGTGA
* * * *
85034125 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTAATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
85034190 GTGATGAATGTGAAAGT-T-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
85034253 TGTATATATGTGA
131 TGTATATATGTGA
*** * * * * * * * *
85034266 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
85034317 TCCCGAAGGG
Statistics
Matches: 453, Mismatches: 25, Indels: 30
0.89 0.05 0.06
Matches are distributed among these distances:
141 94 0.21
143 219 0.48
145 2 0.00
146 1 0.00
148 1 0.00
149 1 0.00
151 3 0.01
152 2 0.00
153 1 0.00
155 1 0.00
157 128 0.28
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:85034072 original size:16 final size:16
Alignment explanation
Indices: 85034053--85034086 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
85034043 TGAAAGTGTA
85034053 TATATGTGATAAGGCC
1 TATATGTGATAAGGCC
85034069 TATATGTGATAAGGCC
1 TATATGTGATAAGGCC
85034085 TA
1 TA
85034087 ATGGCCGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (16 bp):
TATATGTGATAAGGCC
Found at i:85034087 original size:157 final size:157
Alignment explanation
Indices: 85033912--85034227 Score: 551
Period size: 157 Copynumber: 2.0 Consensus size: 157
85033902 AAAGTGTATA
* *
85033912 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATGTGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTAATAAGGCCTA
* *
85033977 ATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAAT
66 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAAT
85034042 GTGAAAGTGTATATATGTGATAAGGCC
131 GTGAAAGTGTATATATGTGATAAGGCC
*
85034069 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTAATAAGGCCTA
* * *
85034134 ATGGCCGATGTGATGAATGTGAAAGTTTATATATGTAATAAGGCCTAATGGCCGATGTGATGAAT
66 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAAT
*
85034199 GTGAAAGTTTATATATGTGATAAGGCC
131 GTGAAAGTGTATATATGTGATAAGGCC
85034226 TA
1 TA
85034228 ATGGCCGATG
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 150 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (157 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTAATAAGGCCTA
ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAAT
GTGAAAGTGTATATATGTGATAAGGCC
Found at i:85034094 original size:63 final size:63
Alignment explanation
Indices: 85034010--85034133 Score: 230
Period size: 63 Copynumber: 2.0 Consensus size: 63
85034000 AGTGTATATG
*
85034010 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTATA
*
85034073 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTA
85034134 ATGGCCGATG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (63 bp):
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTATA
Found at i:85034175 original size:110 final size:110
Alignment explanation
Indices: 85033963--85034180 Score: 382
Period size: 110 Copynumber: 2.0 Consensus size: 110
85033953 AGTGCATATG
* *
85033963 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAG
*
85034028 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTATA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTATA
* *
85034073 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAG
*
85034138 CCGATGTGATGAATGTGAAAGTTTATATATGTAATAAGGCCTA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTA
85034181 ATGGCCGATG
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
110 102 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (110 bp):
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAG
CCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTATA
Found at i:85034491 original size:37 final size:37
Alignment explanation
Indices: 85034435--85034513 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
85034425 CCGAGCTCTA
* * *
85034435 AAGACCTGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
85034472 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
85034509 AAGAC
1 AAGAC
85034514 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:85044599 original size:7 final size:7
Alignment explanation
Indices: 85044587--85044616 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
85044577 TAATATATAT
85044587 AATAAAA
1 AATAAAA
85044594 AATAAAA
1 AATAAAA
85044601 AAT-AAA
1 AATAAAA
85044607 AATAAAA
1 AATAAAA
85044614 AAT
1 AAT
85044617 TTAGGGTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AATAAAA
Found at i:85044609 original size:13 final size:13
Alignment explanation
Indices: 85044591--85044616 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85044581 ATATATAATA
85044591 AAAAATAAAAAAT
1 AAAAATAAAAAAT
85044604 AAAAATAAAAAAT
1 AAAAATAAAAAAT
85044617 TTAGGGTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:85048500 original size:47 final size:46
Alignment explanation
Indices: 85048389--85048650 Score: 144
Period size: 47 Copynumber: 5.6 Consensus size: 46
85048379 GTGCGCCAAT
* ** *
85048389 GTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCCAGA
* *
85048435 GTAAGACCATGT-TTGGACATGGCATCGG-CACAGAGATGAGTGCCAGA
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-AGATGAGAGCCAGA
* * * * *
85048482 GTAAGATATGTCTGGGACATGCATCGACCTCGACAGA-GATAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCAC-A-AGATGAGAGCCAGA
* * * * * * * * *
85048529 GCAAGACGTG-CTTGGGACACGCATCAG-C-TAAGA-GTTGTGCTAGT
1 GTAAGACATGTC-TGGGACATGCATCGGCCACAAGATG-AGAGCCAGA
** * *
85048573 GTAAGACATGTCTGGGACATGCATTAG-CATGCATATATGAGAGCCAAA
1 GTAAGACATGTCTGGGACATGCATCGGCCA--CA-AGATGAGAGCCAGA
85048621 GTAAGACCATGTCTGGGACATGGCATCGGC
1 GTAAGA-CATGTCTGGGACAT-GCATCGGC
85048651 AATTTATCCC
Statistics
Matches: 161, Mismatches: 38, Indels: 29
0.71 0.17 0.13
Matches are distributed among these distances:
43 4 0.02
44 28 0.17
45 1 0.01
46 29 0.18
47 63 0.39
48 16 0.10
49 15 0.09
50 5 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCCAGA
Found at i:85052875 original size:21 final size:24
Alignment explanation
Indices: 85052831--85052875 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
85052821 AGAAGGCCTC
*
85052831 ATGGTGAAATGTTCTTCTTCCAAT
1 ATGGTGAAATGTTCTGCTTCCAAT
85052855 ATGGTGAAAT-TT-TGC-TCCAAT
1 ATGGTGAAATGTTCTGCTTCCAAT
85052876 GCCATGAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 2 0.10
24 10 0.50
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (24 bp):
ATGGTGAAATGTTCTGCTTCCAAT
Found at i:85056828 original size:17 final size:17
Alignment explanation
Indices: 85056806--85056842 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
85056796 ATTTGTTGCT
85056806 GGTGTCAACAACCAAAA
1 GGTGTCAACAACCAAAA
85056823 GGTGTCAACAACCAAAA
1 GGTGTCAACAACCAAAA
85056840 GGT
1 GGT
85056843 CTGAGTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.14
Consensus pattern (17 bp):
GGTGTCAACAACCAAAA
Found at i:85061576 original size:40 final size:40
Alignment explanation
Indices: 85061502--85061643 Score: 234
Period size: 40 Copynumber: 3.6 Consensus size: 40
85061492 AACCCAAGTA
* *
85061502 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
85061541 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
85061581 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
85061621 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
85061644 CATTCGAATA
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 12 0.12
40 84 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:85069595 original size:13 final size:14
Alignment explanation
Indices: 85069558--85069607 Score: 57
Period size: 13 Copynumber: 3.4 Consensus size: 14
85069548 TTATTTAAAT
*
85069558 ATAATTAAATATTA
1 ATAAATAAATATTA
85069572 ATTAATTATAAATATT-
1 A-TAA--ATAAATATTA
85069588 ATAAATAAATATTA
1 ATAAATAAATATTA
85069602 ATAAAT
1 ATAAAT
85069608 TCAGTTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
13 9 0.29
14 7 0.23
15 6 0.19
16 1 0.03
17 8 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAATAAATATTA
Found at i:85070073 original size:20 final size:20
Alignment explanation
Indices: 85070048--85070086 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
85070038 ATCGGATTCG
*
85070048 ATATTATTTATTATATATGT
1 ATATTATGTATTATATATGT
85070068 ATATTATGTATTATATATG
1 ATATTATGTATTATATATG
85070087 CAAATTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
ATATTATGTATTATATATGT
Found at i:85076251 original size:34 final size:34
Alignment explanation
Indices: 85076178--85076252 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
85076168 ATACTGCATG
** *
85076178 ACTGC-TACTGATACTGTGATGGGCTAAGGCCTT
1 ACTGCATACTGATACCATGATGGGCTAAGACCTT
* *
85076211 AATGCATACTGATACCATGATGGGTTAAGACAC-T
1 ACTGCATACTGATACCATGATGGGCTAAGAC-CTT
85076245 ACTGCATA
1 ACTGCATA
85076253 TTTGATACTA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
33 4 0.12
34 29 0.85
35 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (34 bp):
ACTGCATACTGATACCATGATGGGCTAAGACCTT
Found at i:85081237 original size:27 final size:27
Alignment explanation
Indices: 85081207--85081384 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
85081197 ATATTGAGTC
* *
85081207 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
85081234 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
85081261 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
85081289 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
85081316 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
85081343 CTCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
85081370 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
85081385 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:85081349 original size:82 final size:81
Alignment explanation
Indices: 85081228--85081383 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
85081218 TGCTATATAA
* *
85081228 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85081293 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
85081310 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCTCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
*
85081374 CCCTTAGTGC
65 CACTTAGTGC
85081384 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85085800 original size:53 final size:54
Alignment explanation
Indices: 85085719--85085923 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 54
85085709 TTTCCTTTTT
* * * * **
85085719 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCATTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
* * * * *
85085772 GAACTCACCAATGTCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
* * * *
85085826 GTAACTCATCC-ATGCCATGTCTTGCCATGGTCTTACATGAT-TGCCTTGCCTTATA
1 G-AACTCA-CCAATGCCATGCCTTGGCATGGTCTTACATGGTAT-CATTGCCTTATA
* * * *
85085881 GAAATTATCAATGCCATGCCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATC
85085924 CTTATCTTAC
Statistics
Matches: 122, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
53 43 0.35
54 34 0.28
55 43 0.35
56 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
Found at i:85085914 original size:54 final size:56
Alignment explanation
Indices: 85085730--85085920 Score: 191
Period size: 55 Copynumber: 3.5 Consensus size: 56
85085720 AACTTACCAT
* * * * *
85085730 TGCCATGTCTTGACATGGTCTT--ATG-TGGTATCATTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGG-ACCTTTGCCTTATAGAACTCATCAA
* * *
85085783 TGTCATGCCTTGGCATGGTTTTACATG--GGACCTTTGCCTTATAGTAACTCATCCA
1 TGCCATGCCTTGGCATGGTCTTACATGATGGACCTTTGCCTTATAG-AACTCATCAA
* * * * *
85085838 TGCCATGTCTTGCCATGGTCTTACATGATTG-CC-TTGCCTTATAGAAATTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGGACCTTTGCCTTATAGAACTCATCAA
85085892 TGCCATGCCTTGGCATGGTCTTACATGAT
1 TGCCATGCCTTGGCATGGTCTTACATGAT
85085921 ATCCTTATCT
Statistics
Matches: 114, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
53 29 0.25
54 37 0.32
55 45 0.39
56 2 0.02
57 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (56 bp):
TGCCATGCCTTGGCATGGTCTTACATGATGGACCTTTGCCTTATAGAACTCATCAA
Found at i:85085960 original size:47 final size:47
Alignment explanation
Indices: 85085905--85086026 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
85085895 CATGCCTTGG
* * *
85085905 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCAATGTTCCAAA
*
85085952 CATGGTCTTACAAGGTATCCTTGTCTTACCAAATGCAATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCAATGTTCCAAA
85085999 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
85086027 GTGCCAAATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCAATGTTCCAAA
Found at i:85088084 original size:155 final size:154
Alignment explanation
Indices: 85087802--85088108 Score: 515
Period size: 155 Copynumber: 2.0 Consensus size: 154
85087792 TTCTGAGGCA
* *
85087802 GTTAGGAGGATTATCTGCTGTTAGCAGAATTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
1 GTTAGGAGGATTATCTACCGTTAGCAGAATTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
*
85087867 ATGGCACCTTACGAGGCACTATATGGTCATAAGTGTCGTACTCCCTTATGTTGGACTGAGTTGGG
66 ATGGCACCTTACGAGGCACTATATGGTCATAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
85087932 CGAGAAACGTGTTCCAGGTTCTACC
131 CGAGAAAC-TGTTCCAGGTTCTACC
*
85087957 GTTAGGAGGATTATCTACCGTTAGCAGAGTTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
1 GTTAGGAGGATTATCTACCGTTAGCAGAATTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
* *
85088022 ATGGCACCTTACGAGGCACTATGTGGTCGTAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
66 ATGGCACCTTACGAGGCACTATATGGTCATAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
* ** *
85088087 TGAGCGACTGTTCTAGGTTCTA
131 CGAGAAACTGTTCCAGGTTCTA
85088109 AATTGGTTTC
Statistics
Matches: 142, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
154 13 0.09
155 129 0.91
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (154 bp):
GTTAGGAGGATTATCTACCGTTAGCAGAATTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
ATGGCACCTTACGAGGCACTATATGGTCATAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
CGAGAAACTGTTCCAGGTTCTACC
Found at i:85093983 original size:27 final size:28
Alignment explanation
Indices: 85093946--85094085 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
85093936 AGCATGGCTG
* *
85093946 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
85093972 CCAGATACAGATA-ATCGTGGCAAAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
85094000 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
85094027 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
85094054 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
85094081 CCAGA
1 CCAGA
85094086 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.05
27 83 0.80
28 16 0.15
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:85095744 original size:26 final size:26
Alignment explanation
Indices: 85095706--85095841 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 26
85095696 CATGAAATTC
* *
85095706 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
85095732 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
* *
85095758 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
*
85095784 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
* *
85095810 TTATAAAGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
85095836 TTATCA
1 TTATCA
85095842 ATTTATATCA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 99 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:85099850 original size:27 final size:26
Alignment explanation
Indices: 85099813--85099954 Score: 158
Period size: 27 Copynumber: 5.3 Consensus size: 26
85099803 AGCATGGCTG
* **
85099813 CCAGAACAGATAATGTGACAGATTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
85099839 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
85099867 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
85099894 CCAGATCAGATATTTGTAGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
85099921 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
85099948 CCAGAAC
1 CCAGAAC
85099955 GCTTCCTCCA
Statistics
Matches: 104, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.05
27 83 0.80
28 16 0.15
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:85099877 original size:54 final size:54
Alignment explanation
Indices: 85099813--85099952 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
85099803 AGCATGGCTG
** *
85099813 CCAGAACAGATA-ATGTGACAGATTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTAGCAGAGCCA
* * *
85099867 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTAGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTAGCAGAGCCA
* * * *
85099921 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGACAGAGCCACCAGA
85099953 ACGCTTCCTC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
54 59 0.78
55 17 0.22
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTAGCAGAGCCA
Found at i:85100071 original size:27 final size:26
Alignment explanation
Indices: 85100047--85100099 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
85100037 TTTTCAGTCA
85100047 AAATTAAC-CCTAGGGGTATAACAGT
1 AAATTAACACCTAGGGGTATAACAGT
* *
85100072 AATTTTACACCTAGGGGTATAACAGT
1 AAATTAACACCTAGGGGTATAACAGT
85100098 AA
1 AA
85100100 TTTTCCATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (26 bp):
AAATTAACACCTAGGGGTATAACAGT
Found at i:85100084 original size:26 final size:27
Alignment explanation
Indices: 85100055--85100130 Score: 100
Period size: 26 Copynumber: 2.8 Consensus size: 27
85100045 CAAAATTAAC
85100055 CCTAGGGGTATAACAGTAATTTT-ACA
1 CCTAGGGGTATAACAGTAATTTTCACA
*
85100081 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAACAGTAATTTT-CACA
* * *
85100109 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
85100131 AGCTACTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 23 0.52
28 21 0.48
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTCACA
Found at i:85101607 original size:26 final size:26
Alignment explanation
Indices: 85101570--85101727 Score: 234
Period size: 26 Copynumber: 6.2 Consensus size: 26
85101560 CATGAAATTC
* *
85101570 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
**
85101596 TTATCATAAAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
85101622 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
85101648 TTATCAT-GAACA-TTA-CTAACC-A
1 TTATCATGGAACATTTACCTAACCTA
*
85101670 TTATCATGGAACATTTACCTAACTTA
1 TTATCATGGAACATTTACCTAACCTA
*
85101696 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
85101722 TTATCA
1 TTATCA
85101728 ATTTGTATCA
Statistics
Matches: 121, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
22 8 0.07
23 11 0.09
24 6 0.05
25 10 0.08
26 86 0.71
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:85101698 original size:74 final size:78
Alignment explanation
Indices: 85101570--85101727 Score: 252
Period size: 74 Copynumber: 2.1 Consensus size: 78
85101560 CATGAAATTC
*
85101570 TTATCATGAAACATTTACCTAACCCATTATCATAAAACATTTACCTAACCTATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATAAAACATTTACCTAACCTATTATCAAGGAACA
85101635 TTTACCTAACCTA
66 TTTACCTAACCTA
** *
85101648 TTATCATG-AACA-TTA-CTAA-CCATTATCATGGAACATTTACCTAACTTATTATCAAGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATAAAACATTTACCTAACCTATTATCAAGGAACA
85101709 TTTACCTAACCTA
66 TTTACCTAACCTA
85101722 TTATCA
1 TTATCA
85101728 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
74 57 0.75
75 4 0.05
76 3 0.04
77 4 0.05
78 8 0.11
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATAAAACATTTACCTAACCTATTATCAAGGAACA
TTTACCTAACCTA
Found at i:85105856 original size:21 final size:22
Alignment explanation
Indices: 85105820--85105865 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
85105810 ATTATTATTA
* *
85105820 TTATTAAACTTTTTTTAAATTG
1 TTATTAAACATTTTTTAAAGTG
85105842 TTATT-AACATTTTTTAAAGTG
1 TTATTAAACATTTTTTAAAGTG
85105863 TTA
1 TTA
85105866 ACTTGAAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (22 bp):
TTATTAAACATTTTTTAAAGTG
Found at i:85132885 original size:13 final size:13
Alignment explanation
Indices: 85132867--85132908 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
85132857 AAACCCTAAA
*
85132867 TTTTCTCCTTTCT
1 TTTTCTTCTTTCT
*
85132880 TTTTCTTTCTATCT
1 TTTTC-TTCTTTCT
85132894 TTTTCTTCTTTCT
1 TTTTCTTCTTTCT
85132907 TT
1 TT
85132909 CCCCTGTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTCTTCTTTCT
Found at i:85137659 original size:23 final size:23
Alignment explanation
Indices: 85137577--85137663 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
85137567 CCTGATCAGT
*
85137577 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
85137599 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
85137619 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
85137642 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
85137664 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:85138063 original size:15 final size:15
Alignment explanation
Indices: 85138035--85138092 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
85138025 TCATATATAT
*
85138035 TATATAATTTAATCAA
1 TATA-AATTCAATCAA
85138051 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
85138066 AATAATTTCAATCAA
1 TATAAATTCAATCAA
85138081 TATAAATTCAAT
1 TATAAATTCAAT
85138093 AAAACAGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:85138081 original size:30 final size:28
Alignment explanation
Indices: 85138038--85138096 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
85138028 TATATATTAT
85138038 ATAATTTAATCAATATAAATTCAATCAAA
1 ATAATTTAATCAATATAAATTCAAT-AAA
85138067 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAATTT-AATCAATATAAATTCAATAAA
85138096 A
1 A
85138097 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATTTAATCAATATAAATTCAATAAA
Found at i:85138255 original size:2 final size:2
Alignment explanation
Indices: 85138248--85138291 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
85138238 ATATCTCATT
85138248 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
85138290 CA
1 CA
85138292 TATATATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:85140493 original size:21 final size:21
Alignment explanation
Indices: 85140461--85140511 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
85140451 GTATATAATT
85140461 CATATATTCCATATATTATCAA
1 CATAT-TTCCATATATTATCAA
*
85140483 CATATTTCCATATATTGTCAA
1 CATATTTCCATATATTATCAA
85140504 CATATTTC
1 CATATTTC
85140512 ACATTCTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 23 0.82
22 5 0.18
ACGTcount: A:0.35, C:0.20, G:0.02, T:0.43
Consensus pattern (21 bp):
CATATTTCCATATATTATCAA
Found at i:85140572 original size:16 final size:17
Alignment explanation
Indices: 85140540--85140572 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
85140530 ACTATACCAT
*
85140540 TTTCATTTCTCATATCA
1 TTTCATTTCTAATATCA
85140557 TTTCATTTC-AATATCA
1 TTTCATTTCTAATATCA
85140573 ATTGTAAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTCATTTCTAATATCA
Found at i:85140718 original size:25 final size:25
Alignment explanation
Indices: 85140684--85140735 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
85140674 ATCGGATAAT
85140684 TCGAAGTAATAATTGACACACAGTG
1 TCGAAGTAATAATTGACACACAGTG
*
85140709 TCGAAGTAATAATTGACATACAGTG
1 TCGAAGTAATAATTGACACACAGTG
85140734 TC
1 TC
85140736 TCATCGGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (25 bp):
TCGAAGTAATAATTGACACACAGTG
Found at i:85141681 original size:13 final size:13
Alignment explanation
Indices: 85141663--85141704 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
85141653 AAACCCTAAA
*
85141663 TTTTCTCCTTTCT
1 TTTTCTTCTTTCT
*
85141676 TTTTCTTTCTATCT
1 TTTTC-TTCTTTCT
85141690 TTTTCTTCTTTCT
1 TTTTCTTCTTTCT
85141703 TT
1 TT
85141705 CTCCTGTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTCTTCTTTCT
Found at i:85141915 original size:24 final size:24
Alignment explanation
Indices: 85141888--85141998 Score: 99
Period size: 25 Copynumber: 4.7 Consensus size: 24
85141878 CATAATTTGA
*
85141888 TTTAATTACTTAT-TTATTTTATAC
1 TTTAATTA-TTATATTATATTATAC
*
85141912 TTTAATTATTATATTATATTATAA
1 TTTAATTATTATATTATATTATAC
* *
85141936 TATATTATATTATATTATATTATA-
1 TTTAAT-TATTATATTATATTATAC
85141960 -TT-A-TATTATATTATATTATA-
1 TTTAATTATTATATTATATTATAC
*
85141980 TTATATTATATTATATTAT
1 TT-TAAT-TATTATATTAT
85141999 TTTTTTAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
20 17 0.23
21 1 0.01
22 1 0.01
23 5 0.07
24 21 0.29
25 28 0.38
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTAATTATTATATTATATTATAC
Found at i:85141926 original size:5 final size:5
Alignment explanation
Indices: 85141918--85141998 Score: 153
Period size: 5 Copynumber: 16.2 Consensus size: 5
85141908 ATACTTTAAT
*
85141918 TATTA TATTA TATTA TAATA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
85141968 TATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA T
85141999 TTTTTTAAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 74 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:85143872 original size:21 final size:23
Alignment explanation
Indices: 85143829--85143889 Score: 81
Period size: 21 Copynumber: 2.7 Consensus size: 23
85143819 TTATCTCTCC
*
85143829 TAGGGTTAAGGTTTTTATTTTAT
1 TAGGGTTAAGGATTTTATTTTAT
85143852 TAGGGTTAA-GATTTT-TTTTAT
1 TAGGGTTAAGGATTTTATTTTAT
* *
85143873 TAGGGTTTAGGGTTTTA
1 TAGGGTTAAGGATTTTA
85143890 GGGAAGTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 14 0.42
22 10 0.30
23 9 0.27
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (23 bp):
TAGGGTTAAGGATTTTATTTTAT
Found at i:85148802 original size:3 final size:3
Alignment explanation
Indices: 85148794--85148849 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
85148784 CCTATAGACT
85148794 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
85148842 TCA TCA TC
1 TCA TCA TC
85148850 GCCTGAGTAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:85151272 original size:18 final size:19
Alignment explanation
Indices: 85151249--85151297 Score: 91
Period size: 18 Copynumber: 2.6 Consensus size: 19
85151239 ATCTTCAATG
85151249 TGCAATCTTAGATATGAT-
1 TGCAATCTTAGATATGATA
85151267 TGCAATCTTAGATATGATA
1 TGCAATCTTAGATATGATA
85151286 TGCAATCTTAGA
1 TGCAATCTTAGA
85151298 AGATATGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 18 0.60
19 12 0.40
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (19 bp):
TGCAATCTTAGATATGATA
Found at i:85151323 original size:22 final size:22
Alignment explanation
Indices: 85151258--85151320 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
85151248 GTGCAATCTT
85151258 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
85151276 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
85151298 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
85151321 GATTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
18 9 0.24
19 9 0.24
22 8 0.21
23 12 0.32
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:85153186 original size:18 final size:18
Alignment explanation
Indices: 85153159--85153196 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
85153149 TAAAAATTAA
85153159 AAAATATAAAT-TAAATAT
1 AAAATATAAATGT-AATAT
*
85153177 AAAATTTAAATGTAATAT
1 AAAATATAAATGTAATAT
85153195 AA
1 AA
85153197 GGAAAGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AAAATATAAATGTAATAT
Found at i:85154790 original size:23 final size:21
Alignment explanation
Indices: 85154763--85154827 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
85154753 TTCGAAATTT
85154763 AATTTTTTATTTTTATTTTTAA
1 AATTTTTTA-TTTTATTTTTAA
** *
85154785 GAATTTAATATTTTATTTTTTA
1 -AATTTTTTATTTTATTTTTAA
* * *
85154807 AATTTTTAAATTTATGTTTAA
1 AATTTTTTATTTTATTTTTAA
85154828 TTATTAATAT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
21 15 0.45
22 11 0.33
23 7 0.21
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (21 bp):
AATTTTTTATTTTATTTTTAA
Found at i:85154821 original size:43 final size:44
Alignment explanation
Indices: 85154760--85154858 Score: 112
Period size: 43 Copynumber: 2.2 Consensus size: 44
85154750 AAATTCGAAA
* ** *
85154760 TTTAATTTTTTATTTTTATTTTTAAGAATTTAATATT-TT-ATTT
1 TTTAAATTTTTAAATTTATGTTTAAGAA-TTAATATTATTAATTT
**
85154803 TTTAAATTTTTAAATTTATGTTTAATTATTAATATTATTAATTT
1 TTTAAATTTTTAAATTTATGTTTAAGAATTAATATTATTAATTT
85154847 TTTAAAATTTTT
1 TTT-AAATTTTT
85154859 TAATGTGATA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 8 0.17
43 24 0.51
44 7 0.15
45 8 0.17
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (44 bp):
TTTAAATTTTTAAATTTATGTTTAAGAATTAATATTATTAATTT
Found at i:85166663 original size:29 final size:29
Alignment explanation
Indices: 85166631--85166687 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
85166621 GGATTTTTAA
*
85166631 AAAACTTAAATTTAAAACTAAAATTAAAG
1 AAAACTTAAATTCAAAACTAAAATTAAAG
*
85166660 AAAACTTAAATTCAAAACTAAATTTAAA
1 AAAACTTAAATTCAAAACTAAAATTAAA
85166688 ACTTAGCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (29 bp):
AAAACTTAAATTCAAAACTAAAATTAAAG
Found at i:85175570 original size:79 final size:81
Alignment explanation
Indices: 85175428--85175610 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
85175418 TCGAATGATG
* * *
85175428 TCCGGGCTAAGTCCCGGAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
85175492 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
85175507 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
85175569 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
85175587 ACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
85175611 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:85175619 original size:40 final size:39
Alignment explanation
Indices: 85175429--85175612 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
85175419 CGAATGATGT
* * * *
85175429 CCGGGCTAAGTCCCGGAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
85175469 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
85175509 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
85175547 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
85175588 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85175613 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85175634 original size:79 final size:77
Alignment explanation
Indices: 85175462--85175645 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 77
85175452 GTGCTAAGTG
* * *
85175462 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGG
**
85175527 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* *
85175541 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAA
*
85175605 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
85175620 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
85175646 TACGTGATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCA
TTGGAACGAGTT
Found at i:85183740 original size:79 final size:81
Alignment explanation
Indices: 85183574--85183755 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
85183564 CGAATGATGT
* *
85183574 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
85183638 GTGCGAGTTACTAATT
66 GTGCGAGTTACTAATA
** * * **
85183654 CTAGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
85183716 TGTGCGAGTTACT-ATAA
65 TGTGCGAGTTACTAAT-A
*
85183733 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
85183756 TGAACGAGTA
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 26 0.30
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATA
Found at i:85183764 original size:40 final size:40
Alignment explanation
Indices: 85183573--85183757 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
85183563 TCGAATGATG
* * *
85183573 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
85183613 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
85183653 TCTAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
85183692 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
85183733 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85183758 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85183779 original size:79 final size:78
Alignment explanation
Indices: 85183574--85183790 Score: 219
Period size: 79 Copynumber: 2.7 Consensus size: 78
85183564 CGAATGATGT
* *
85183574 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
85183637 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
** * *
85183654 CTAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
85183717 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
85183733 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
85183791 TACGTGATTC
Statistics
Matches: 113, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
78 3 0.03
79 66 0.58
80 44 0.39
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:85186737 original size:3 final size:3
Alignment explanation
Indices: 85186729--85186762 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
85186719 CTATTTACTC
85186729 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
85186763 TCTTTATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:85188372 original size:12 final size:12
Alignment explanation
Indices: 85188351--85188419 Score: 77
Period size: 12 Copynumber: 5.6 Consensus size: 12
85188341 ATTGAGTCCA
85188351 TTTATTTTTCTT
1 TTTATTTTTCTT
85188363 TTCT-TTTTTCTTT
1 TT-TATTTTTC-TT
* *
85188376 TTTCTTTTTAGTT
1 TTTATTTTT-CTT
85188389 TTTATTTTTCTT
1 TTTATTTTTCTT
*
85188401 TTTATTTTTCTG
1 TTTATTTTTCTT
85188413 TTTATTT
1 TTTATTT
85188420 GTATTTTCCT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
12 29 0.59
13 20 0.41
ACGTcount: A:0.07, C:0.09, G:0.03, T:0.81
Consensus pattern (12 bp):
TTTATTTTTCTT
Found at i:85188390 original size:7 final size:6
Alignment explanation
Indices: 85188351--85188426 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
85188341 ATTGAGTCCA
* * * *
85188351 TTTATT TTTCTT TTCT-TT TTTCTTT TTTCTT TTTAGTT TTTATT TTTCTT
1 TTTATT TTTATT TT-TATT TTT-ATT TTTATT TTTA-TT TTTATT TTTATT
* * *
85188401 TTTATT TTTCTG TTTATT TGTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
85188427 CCTAGAATTT
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
5 1 0.02
6 42 0.76
7 12 0.22
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:85188390 original size:19 final size:20
Alignment explanation
Indices: 85188353--85188411 Score: 79
Period size: 19 Copynumber: 3.0 Consensus size: 20
85188343 TGAGTCCATT
85188353 TATTTTTCTTTTCT-TTTTTC
1 TATTTTTCTTTT-TATTTTTC
*
85188373 T-TTTTTCTTTTTAGTTTT-
1 TATTTTTCTTTTTATTTTTC
85188391 TATTTTTCTTTTTATTTTTC
1 TATTTTTCTTTTTATTTTTC
85188411 T
1 T
85188412 GTTTATTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 2 0.06
19 30 0.88
20 2 0.06
ACGTcount: A:0.07, C:0.10, G:0.02, T:0.81
Consensus pattern (20 bp):
TATTTTTCTTTTTATTTTTC
Found at i:85191398 original size:17 final size:17
Alignment explanation
Indices: 85191376--85191409 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
85191366 ACACAAACTG
85191376 AAACTAACGCAAAAACA
1 AAACTAACGCAAAAACA
* *
85191393 AAACTATCTCAAAAACA
1 AAACTAACGCAAAAACA
85191410 CACCAAAACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.24, G:0.03, T:0.12
Consensus pattern (17 bp):
AAACTAACGCAAAAACA
Found at i:85195276 original size:146 final size:146
Alignment explanation
Indices: 85195011--85195300 Score: 435
Period size: 146 Copynumber: 2.0 Consensus size: 146
85195001 AACCAACCAA
* * *
85195011 TCTATTCCCAGAATTAAATCGAACTCCCCAAACGGAAGCTCCATCAGATTTTCCAGAAAGATAGC
1 TCTATTCCCAAAATTAAATCGAACTCCCCAAACGGAAGCTCCATCAGATTTTCCAGAAAGAAACC
85195076 CTCTTGTACCACTAACTAGACATCCCTATAATGTTTACTAACCCAAACAAACTGCCCCAAT-GGA
66 CTCTTGTACCACTAACTAGACATCCCTATAATGTTTACTAACCCAAACAAACTGCCCCAATAGG-
85195140 CTTAGTACAATAATCAG
130 CTTAGTACAATAATCAG
* * *
85195157 TCTATTCCCAAAATTAAATTGAACTCCCCAAATGGAAGCTCTATCAGATTTTCCAGAAAGACAAC
1 TCTATTCCCAAAATTAAATCGAACTCCCCAAACGGAAGCTCCATCAGATTTTCCAGAAAGA-AAC
* *
85195222 CCT-TTGTACCACTAA-TAGGACATTCCTATAGA-GTTTACTAACCCAAACAGACTGCCCCAATA
65 CCTCTTGTACCACTAACTA-GACATCCCTATA-ATGTTTACTAACCCAAACAAACTGCCCCAATA
*
85195284 GGCTTAGTACAGTAATC
128 GGCTTAGTACAATAATC
85195301 TCACTAGAAG
Statistics
Matches: 131, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
145 2 0.02
146 122 0.93
147 7 0.05
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.26
Consensus pattern (146 bp):
TCTATTCCCAAAATTAAATCGAACTCCCCAAACGGAAGCTCCATCAGATTTTCCAGAAAGAAACC
CTCTTGTACCACTAACTAGACATCCCTATAATGTTTACTAACCCAAACAAACTGCCCCAATAGGC
TTAGTACAATAATCAG
Found at i:85199546 original size:14 final size:15
Alignment explanation
Indices: 85199522--85199551 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
85199512 GTTAGTGTAG
85199522 TTTTTATTTTTTATT
1 TTTTTATTTTTTATT
85199537 TTTTTA-TTTTTATT
1 TTTTTATTTTTTATT
85199551 T
1 T
85199552 CTTCTTTCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTATTTTTTATT
Found at i:85207786 original size:53 final size:53
Alignment explanation
Indices: 85207616--85207819 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 53
85207606 AGGGTTTAAG
* *
85207616 GATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGCAAA
* * * *
85207671 GATACCATGTAAG-GCATGTCAAGACATTGCATTGATAAGTTACTATAAGG-AAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGCAAA
* *
85207724 -ATGACCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAA
1 GAT-A-CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAA
* * *
85207778 GATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
85207820 TCAAAAGGAT
Statistics
Matches: 124, Mismatches: 17, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
51 2 0.02
52 4 0.03
53 49 0.40
54 32 0.26
55 37 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAA
Found at i:85209455 original size:48 final size:48
Alignment explanation
Indices: 85209310--85209455 Score: 160
Period size: 44 Copynumber: 3.1 Consensus size: 48
85209300 GTGTTACATT
* *
85209310 CATATATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCACA
1 CATATCTC-AGGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCACA
* ***
85209359 CA-A---CAAGCTGATGCCATGTCCCAGACAGGT-TTACACTAGCTTG
1 CATATCTCAGGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCACA
* *
85209402 TATATCTCTAGGCTGATG-CATGTCCCAGACATGTCTTACACTAGCACA
1 CATATCTC-AGGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCACA
85209450 CATATC
1 CATATC
85209456 ACCTAATGTC
Statistics
Matches: 79, Mismatches: 12, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
43 11 0.14
44 25 0.32
45 1 0.01
47 16 0.20
48 24 0.30
49 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
CATATCTCAGGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCACA
Found at i:85210062 original size:20 final size:20
Alignment explanation
Indices: 85210037--85210075 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
85210027 AAAATTTCAA
85210037 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
85210057 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
85210076 AATAGCCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:85225160 original size:13 final size:13
Alignment explanation
Indices: 85225142--85225170 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85225132 TTTAGTTTAA
85225142 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85225155 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85225168 TTA
1 TTA
85225171 ATAAATAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:85230110 original size:17 final size:18
Alignment explanation
Indices: 85230088--85230121 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
85230078 CACATTGAAG
85230088 TGTTTT-AGTGAAAACCA
1 TGTTTTCAGTGAAAACCA
*
85230105 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
85230122 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCA
Found at i:85231239 original size:57 final size:58
Alignment explanation
Indices: 85231174--85231320 Score: 182
Period size: 57 Copynumber: 2.6 Consensus size: 58
85231164 AACATACATG
85231174 CATATGGCCCA-CTAGGCCCAATCTCAC-TT-ATATGGCCCATATA-GCCCAAT-TCATGTT
1 CATATGGCCCATC-AGGCCCAAT-TCACATTCATATGGCCCAT-TAGGCCCAATCTCAT-TT
*
85231231 CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCTAATCTCATTT
1 CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCATTT
* *
85231289 -ATATGGCCCATCCGGCCCAAATCACATT-ATAT
1 CATATGGCCCATCAGGCCCAATTCACATTCATAT
85231321 TCATGCTCAC
Statistics
Matches: 82, Mismatches: 3, Indels: 11
0.85 0.03 0.11
Matches are distributed among these distances:
56 8 0.10
57 50 0.61
58 20 0.24
59 4 0.05
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (58 bp):
CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCATTT
Found at i:85231240 original size:29 final size:28
Alignment explanation
Indices: 85231174--85231299 Score: 116
Period size: 29 Copynumber: 4.4 Consensus size: 28
85231164 AACATACATG
* *
85231174 CATATGGCCCACTAGGCCCAATCTCACTT
1 CATATGGCCCA-TAAGCCCAATCTCATTT
85231203 -ATATGGCCCATATAGCCCAAT-TCATGTT
1 CATATGGCCCATA-AGCCCAATCTCAT-TT
* *
85231231 CATATGGCCCATCAGGCCCAAT-TCACATT
1 CATATGGCCCAT-AAGCCCAATCTCA-TTT
* *
85231260 CATATGGCCCATTAGGCCTAATCTCATTT
1 CATATGGCCCA-TAAGCCCAATCTCATTT
85231289 -ATATGGCCCAT
1 CATATGGCCCAT
85231300 CCGGCCCAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
27 6 0.07
28 29 0.35
29 44 0.52
30 5 0.06
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (28 bp):
CATATGGCCCATAAGCCCAATCTCATTT
Found at i:85231572 original size:16 final size:16
Alignment explanation
Indices: 85231532--85231574 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
85231522 GCAGCCAAAC
85231532 TTTCGGCTTTTTGACA
1 TTTCGGCTTTTTGACA
* *
85231548 TTTTGGCTTTTTGGCA
1 TTTCGGCTTTTTGACA
*
85231564 TTTCAGCTTTT
1 TTTCGGCTTTT
85231575 CGGCTTTTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.16, G:0.19, T:0.56
Consensus pattern (16 bp):
TTTCGGCTTTTTGACA
Found at i:85235676 original size:24 final size:24
Alignment explanation
Indices: 85235610--85235669 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
85235600 CTGTCAGGAG
*
85235610 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGCAT
*
85235634 AGGATTTAGGAGTTGATAAGTCAT
1 AGGATTTAGGAGTTGATAAGGCAT
85235658 AGGATTTAGGAG
1 AGGATTTAGGAG
85235670 CAGATAAAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.33, C:0.02, G:0.35, T:0.30
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGCAT
Found at i:85237139 original size:27 final size:27
Alignment explanation
Indices: 85237099--85237186 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
85237089 AGGAAGCGTC
* *
85237099 CTGGTGGCTATGCCACAATTACCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
85237126 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
85237153 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
85237181 CTGGTG
1 CTGGTG
85237187 ACCGTCACAT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 3 0.06
27 40 0.75
28 10 0.19
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:85239718 original size:69 final size:69
Alignment explanation
Indices: 85239597--85239730 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 69
85239587 AGAAGTTGGA
* *
85239597 CTCGGCAAACCGGTGATCTCAGAGTTTTAAAAGAGCTTGGTTTGGATTAAATGATTTTTCTTAAA
1 CTCGACAAACCGGTGATCTCAGAGTTTTAAAAGAGCTTGGTTTGGATTAAATGATGTTTCTTAAA
85239662 ATTT
66 ATTT
* * *
85239666 CTCGACAAATCGGTGATCTCAGAGTTTTAAAATAGTTTGGTTTGGATTAAATGATGTTTCTTAAA
1 CTCGACAAACCGGTGATCTCAGAGTTTTAAAAGAGCTTGGTTTGGATTAAATGATGTTTCTTAAA
85239731 TTTTATTTTA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (69 bp):
CTCGACAAACCGGTGATCTCAGAGTTTTAAAAGAGCTTGGTTTGGATTAAATGATGTTTCTTAAA
ATTT
Found at i:85243115 original size:51 final size:51
Alignment explanation
Indices: 85243046--85243225 Score: 220
Period size: 51 Copynumber: 3.5 Consensus size: 51
85243036 TGATAGGTTG
*
85243046 CATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCATTAACTTTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTTGATCA
* * * * * * * * * *
85243097 CGTGTGTAGCACTAAGTGCATGCTACTACGTGTACCAGATTGA--TAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-CATTAACTTTGATCA
*
85243147 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTTGATCA
*
85243198 CATGTGTAGTACTAAATGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
85243226 CGTGTATCAG
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
49 3 0.03
50 35 0.34
51 62 0.60
52 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTTGATCA
Found at i:85243172 original size:101 final size:101
Alignment explanation
Indices: 85242993--85243275 Score: 413
Period size: 101 Copynumber: 2.8 Consensus size: 101
85242983 CTGTTGTGAG
** *
85242993 TCACGTGTGTAGTACTAAGTGCAGGCTACTACAAGTACCAGATTGATAGGTTGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
*
85243058 TAAGTGCAAGCTACTATGCGTACCCATTAACTTTGA
66 TAAGTGCAGGCTACTATGCGTACCCATTAACTTTGA
* *
85243094 TCACGTGTGTAGCACTAAGTGCATGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
*
85243159 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGA
66 TAAGTGCAGGCTACTATGCGTACCCATTAACTTTGA
* * * * * * *** *
85243195 TCACATGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTTAAGTCATGTGTGTAGTAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
85243260 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
85243276 CGTGTACCAG
Statistics
Matches: 163, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 163 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCATTAACTTTGA
Found at i:85243333 original size:50 final size:50
Alignment explanation
Indices: 85242992--85243336 Score: 325
Period size: 50 Copynumber: 6.9 Consensus size: 50
85242982 TCTGTTGTGA
* **
85242992 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACAAGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGATAG
** * * * * *
85243042 GTTGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACC-CATTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGA--TAG
* * * * *
85243093 ATCACGTGTGTAGCACTAAGTGCATGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGATAG
* * * * *
85243143 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGA--TAG
* * * * * * *
85243194 ATCACATGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGATAG
** * *
85243244 GTCATGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGATAG
* * * *
85243294 GTCGCATATGTAGTACTAAGTGCAGGCTACCATGCGTACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA
85243337 GAGCTTCGGT
Statistics
Matches: 229, Mismatches: 60, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
49 7 0.03
50 146 0.64
51 71 0.31
52 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGATAG
Found at i:85245394 original size:43 final size:43
Alignment explanation
Indices: 85245303--85245416 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
85245293 TTGTGTTTAC
* * ***
85245303 ATGTAAGAACATGTCTGGGACATTGGCATCGTTATATGATTTC
1 ATGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAAA
* *
85245346 GTGTAAGACCACGTCTGGGACATTGGCATCGATATATGATAAA
1 ATGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAAA
* *
85245389 ATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTAAGACCATGTCTGGGACATTGGCAT
85245417 TGTGTGAGCT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 6 0.10
43 54 0.90
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAAA
Found at i:85251083 original size:25 final size:24
Alignment explanation
Indices: 85251005--85251087 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 24
85250995 CCTTTTTACC
*
85251005 TTTTTATATTTATTTATTTATT-TAT
1 TTTTTAT-TTTA-TTATTCATTATAT
* *
85251030 TTTTAATTATTATTCTTCATTAT-T
1 TTTTTATT-TTATTATTCATTATAT
85251054 ATTTTTATTGTTATTATTCATTATAT
1 -TTTTTATT-TTATTATTCATTATAT
85251080 TTTTTATT
1 TTTTTATT
85251088 AAGTAGTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
24 9 0.19
25 38 0.79
26 1 0.02
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (24 bp):
TTTTTATTTTATTATTCATTATAT
Found at i:85252744 original size:15 final size:15
Alignment explanation
Indices: 85252724--85252767 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
85252714 TCTGAGTCCA
85252724 TTTATTTTATTTCTT
1 TTTATTTTATTTCTT
*
85252739 TTTATTTTTATTT-TA
1 TTTA-TTTTATTTCTT
85252754 TTTATTTT-TTTCTT
1 TTTATTTTATTTCTT
85252768 AAGATTTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 3 0.12
14 5 0.20
15 9 0.36
16 8 0.32
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTATTTTATTTCTT
Found at i:85252763 original size:16 final size:16
Alignment explanation
Indices: 85252723--85252762 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
85252713 CTCTGAGTCC
85252723 ATTTA-TTTTATTTCT
1 ATTTATTTTTATTTCT
*
85252738 TTTTATTTTTATTT-T
1 ATTTATTTTTATTTCT
85252753 ATTTATTTTT
1 ATTTATTTTT
85252763 TTCTTAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (16 bp):
ATTTATTTTTATTTCT
Found at i:85252774 original size:29 final size:30
Alignment explanation
Indices: 85252723--85252783 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
85252713 CTCTGAGTCC
*** *
85252723 ATTTATTTTATTTCTTTTTATTTTTATTTT
1 ATTTATTTTATTTCTTAAGATTTATATTTT
*
85252753 ATTTATTTT-TTTCTTAAGATTTATGTTTT
1 ATTTATTTTATTTCTTAAGATTTATATTTT
85252782 AT
1 AT
85252784 ATTTTGAACT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (30 bp):
ATTTATTTTATTTCTTAAGATTTATATTTT
Found at i:85260336 original size:27 final size:27
Alignment explanation
Indices: 85260306--85260395 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
85260296 TTTAATTTAC
*
85260306 TAAAATTA-TCGAAATACGCTTAG-TTTG
1 TAAAATTACT-GAAATAC-CCTAGATTTG
* *
85260333 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTAGATTTG
* * * *
85260360 TAAAATTACTGAAGTACCTTCGACTTG
1 TAAAATTACTGAAATACCCTAGATTTG
85260387 TAAAATTAC
1 TAAAATTAC
85260396 CAAAGTACCC
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.06
27 50 0.93
28 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTAGATTTG
Found at i:85260401 original size:27 final size:27
Alignment explanation
Indices: 85260330--85260405 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
85260320 TACGCTTAGT
* * *
85260330 TTGTAAAAATACTGAAA-TACCCTCGAT
1 TTGTAAAATTAC-CAAAGTACCCTCGAC
** *
85260357 TTGTAAAATTACTGAAGTACCTTCGAC
1 TTGTAAAATTACCAAAGTACCCTCGAC
85260384 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAGTACCC
85260406 CCGATTTACA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.05
27 38 0.95
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAGTACCCTCGAC
Found at i:85260420 original size:27 final size:27
Alignment explanation
Indices: 85260390--85260451 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
85260380 CGACTTGTAA
*
85260390 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCAATTTACAG
*** * *
85260417 AATTACCATTTTACCCCCAATTTATAT
1 AATTACCAAAGTACCCCCAATTTACAG
85260444 AATTACCA
1 AATTACCA
85260452 TTTTACCCCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCAATTTACAG
Found at i:85260452 original size:27 final size:27
Alignment explanation
Indices: 85260401--85260468 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
85260391 ATTACCAAAG
*
85260401 TACCCCCGATTTACAGAATTACCATTT
1 TACCCCCAATTTACAGAATTACCATTT
* *
85260428 TACCCCCAATTTATATAATTACCATTT
1 TACCCCCAATTTACAGAATTACCATTT
*
85260455 TACCCCCATTTTAC
1 TACCCCCAATTTAC
85260469 CCTCGACTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.29, C:0.31, G:0.03, T:0.37
Consensus pattern (27 bp):
TACCCCCAATTTACAGAATTACCATTT
Found at i:85260505 original size:65 final size:65
Alignment explanation
Indices: 85260401--85260524 Score: 167
Period size: 65 Copynumber: 1.9 Consensus size: 65
85260391 ATTACCAAAG
* * * * *
85260401 TACCCCCGATTTACAGAATTACCATTTTACCCCCAATTTATATAATTACCATTTTACCCCCATTT
1 TACCCCCGACTTACAGAATTACCATTTTACCACCAATTTACAGAAGTACCATTTTACCCCCATTT
* * * *
85260466 TACCCTCGACTTACAGAATTACCGTTTTACCATCGATTTACAGAAGTACCATTTTACCC
1 TACCCCCGACTTACAGAATTACCATTTTACCACCAATTTACAGAAGTACCATTTTACCC
85260525 TTGATATATA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
65 50 1.00
ACGTcount: A:0.29, C:0.30, G:0.06, T:0.35
Consensus pattern (65 bp):
TACCCCCGACTTACAGAATTACCATTTTACCACCAATTTACAGAAGTACCATTTTACCCCCATTT
Found at i:85260596 original size:27 final size:27
Alignment explanation
Indices: 85260462--85260597 Score: 164
Period size: 27 Copynumber: 5.0 Consensus size: 27
85260452 TTTTACCCCC
* *
85260462 ATTTTACCCTCGACTTACAGAATTACC
1 ATTTTACCCTCGATTTACAGAATTACT
* * * *
85260489 GTTTTACCATCGATTTACAGAAGTACC
1 ATTTTACCCTCGATTTACAGAATTACT
* * *
85260516 ATTTTACCCTTGATATATAGAATTACT
1 ATTTTACCCTCGATTTACAGAATTACT
*
85260543 ATTTTACCCTTGATTTACAGAATTACT
1 ATTTTACCCTCGATTTACAGAATTACT
* *
85260570 GTTTTACCCTCGATTTACAAAATTACT
1 ATTTTACCCTCGATTTACAGAATTACT
85260597 A
1 A
85260598 GAATACCCTA
Statistics
Matches: 92, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (27 bp):
ATTTTACCCTCGATTTACAGAATTACT
Found at i:85260604 original size:27 final size:28
Alignment explanation
Indices: 85260574--85260859 Score: 177
Period size: 27 Copynumber: 10.5 Consensus size: 28
85260564 ATTACTGTTT
**
85260574 TACCCTCGATTTACAAAATTACTAG-AA
1 TACCCTCGATTTGTAAAATTACTAGAAA
* * *
85260601 TACCCTAG-TCTGTAAAATTGCTA-AAA
1 TACCCTCGATTTGTAAAATTACTAGAAA
* *
85260627 TACCCTTGGTTTGTAAAATTAC-AGAAA
1 TACCCTCGATTTGTAAAATTACTAGAAA
* *
85260654 TACCCTCAATTTGTAAAATTACCA-AAA
1 TACCCTCGATTTGTAAAATTACTAGAAA
* *
85260681 TACCC-CTAGTTTGTAAAATTACCA-AAA
1 TACCCTCGA-TTTGTAAAATTACTAGAAA
* * *
85260708 TACCACT-GGTTTGTGAAATTAC-CGAAA
1 TACC-CTCGATTTGTAAAATTACTAGAAA
* *
85260735 TACCCTCAATTTGTAAAATTACCA-AAA
1 TACCCTCGATTTGTAAAATTACTAGAAA
** *
85260762 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTGTAAAATTACTAGAAA
* *
85260789 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTGT-AAAATTACTAGAAA
* * * **
85260818 TACCATTGGTTTACAAAATTACT-GAAA
1 TACCCTCGATTTGTAAAATTACTAGAAA
* *
85260845 TACCCTTGGTTTGTA
1 TACCCTCGATTTGTA
85260860 GATTTACCAA
Statistics
Matches: 207, Mismatches: 35, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
26 27 0.13
27 153 0.74
28 9 0.04
29 18 0.09
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (28 bp):
TACCCTCGATTTGTAAAATTACTAGAAA
Found at i:85260685 original size:54 final size:53
Alignment explanation
Indices: 85260588--85260859 Score: 201
Period size: 54 Copynumber: 5.0 Consensus size: 53
85260578 CTCGATTTAC
* * * *
85260588 AAAATTACTAG-AATACCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTAC-AGAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGT
** * *
85260641 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACAGAAATACCCT-GGTTTGTAAAATTACCAAAATACCCTTGGTTTGT
* * ***
85260695 AAAATTACCA-AAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTA-CAGAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGT
* ** * * *
85260749 AAAATTACCA-AAATACCCCTGATTTACAAAGTTA-CAGAAATACCCTTGACTTTCT
1 AAAATTA-CAGAAATA-CCCTGGTTTGTAAAATTACCA-AAATACCCTTG-GTTTGT
* * ** **
85260804 AAAAATTATAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGT
1 -AAAATTACAGAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGT
85260859 A
1 A
85260860 GATTTACCAA
Statistics
Matches: 177, Mismatches: 31, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
52 2 0.01
53 17 0.10
54 105 0.59
55 17 0.10
56 36 0.20
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGT
Found at i:85260718 original size:81 final size:81
Alignment explanation
Indices: 85260574--85260768 Score: 277
Period size: 81 Copynumber: 2.4 Consensus size: 81
85260564 ATTACTGTTT
* ** * * * *
85260574 TACCCTCGATTTACAAAATTACTAGAATA-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCCTTGGTT
85260638 TGTAAAATTACAGAAA
66 TGTAAAATTACAGAAA
*
85260654 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAC-TGGT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACC-CTTGGT
* *
85260718 TTGTGAAATTACCGAAA
65 TTGTAAAATTACAGAAA
85260735 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
85260769 GATTTACAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
80 24 0.23
81 78 0.76
82 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCCTTGGTT
TGTAAAATTACAGAAA
Found at i:85260790 original size:81 final size:81
Alignment explanation
Indices: 85260574--85260821 Score: 274
Period size: 81 Copynumber: 3.0 Consensus size: 81
85260564 ATTACTGTTT
* ** * * * *
85260574 TACCCTCGATTTACAAAATTACTAGAATA-CCCTAG-TCTGTAAAATTGCTAAAATACCCTTGGT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGAT-TGTAAAATTACCAAAATACCCTTGGT
85260637 TTGTAAAATTACAGAAA
65 TTGTAAAATTACAGAAA
*
85260654 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAC-TGGT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAAATACC-CTTGGT
* *
85260718 TTGTGAAATTACCGAAA
65 TTGTAAAATTACAGAAA
85260735 TACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CAGAAATACCCTTG
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA-AAATACCCTTG
* * *
85260797 ACTTTCTAAAAATTATAGAAA
63 -GTTTGT-AAAATTACAGAAA
85260818 TACC
1 TACC
85260822 ATTGGTTTAC
Statistics
Matches: 144, Mismatches: 15, Indels: 15
0.83 0.09 0.09
Matches are distributed among these distances:
79 2 0.01
80 33 0.23
81 89 0.62
82 6 0.04
83 14 0.10
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAAATACCCTTGGTT
TGTAAAATTACAGAAA
Found at i:85260939 original size:26 final size:26
Alignment explanation
Indices: 85260897--85260969 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 26
85260887 AAATGACTAA
* *
85260897 AATACCCCTATTA-GGTAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAGACCAT
*
85260923 AA-AGCCCCTGTAGGGTAAAGTGACCAT
1 AATA-CCCCTGTAGGGTAAA-AGACCAT
*
85260950 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
85260970 TGACGAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
25 3 0.08
26 13 0.34
27 21 0.55
28 1 0.03
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (26 bp):
AATACCCCTGTAGGGTAAAAGACCAT
Found at i:85262179 original size:25 final size:25
Alignment explanation
Indices: 85262133--85262180 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
85262123 TTATAATATG
* * * *
85262133 AAAATGACCGTTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
85262158 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
85262181 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:85262231 original size:9 final size:9
Alignment explanation
Indices: 85262219--85262275 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
85262209 TTTGATAAAC
85262219 ATGATATGT
1 ATGATATGT
*
85262228 ATGATATGCAC
1 ATGATATG--T
*
85262239 ATGACATGT
1 ATGATATGT
*
85262248 ATGATATGCAC
1 ATGATATG--T
85262259 ATGATATGT
1 ATGATATGT
85262268 ATGATATG
1 ATGATATG
85262276 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:85262242 original size:20 final size:20
Alignment explanation
Indices: 85262217--85262287 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
85262207 ATTTTGATAA
85262217 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
85262237 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
85262257 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
85262277 ACATGAGATGT
1 ACATGATATGT
85262288 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:85262264 original size:11 final size:11
Alignment explanation
Indices: 85262228--85262282 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
85262218 CATGATATGT
85262228 ATGATATGCAC
1 ATGATATGCAC
* *
85262239 ATGACATG--T
1 ATGATATGCAC
85262248 ATGATATGCAC
1 ATGATATGCAC
*
85262259 ATGATATG--T
1 ATGATATGCAC
85262268 ATGATATGCAC
1 ATGATATGCAC
85262279 ATGA
1 ATGA
85262283 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:85262413 original size:25 final size:24
Alignment explanation
Indices: 85262334--85262527 Score: 225
Period size: 25 Copynumber: 8.0 Consensus size: 24
85262324 AGGAAGTGCA
*
85262334 AAAGGGCTTATGCCCTAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
85262357 AAAGGGCTTATGCCCCAATTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
85262380 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
85262405 AAAGGGCTTATGTCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
85262430 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
85262455 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
* * *
85262479 AAAGGGTTTTTGCCCTAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
85262503 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
85262528 GATAAAGCAG
Statistics
Matches: 150, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
23 42 0.28
24 29 0.19
25 79 0.53
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:85264835 original size:62 final size:62
Alignment explanation
Indices: 85264738--85264859 Score: 244
Period size: 62 Copynumber: 2.0 Consensus size: 62
85264728 TCTGGCATAG
85264738 ATACGGGATTGAAGAAGCTATGTGGGAGCCCGAGGATGCTATGAAAGAACAATACGCTAATA
1 ATACGGGATTGAAGAAGCTATGTGGGAGCCCGAGGATGCTATGAAAGAACAATACGCTAATA
85264800 ATACGGGATTGAAGAAGCTATGTGGGAGCCCGAGGATGCTATGAAAGAACAATACGCTAA
1 ATACGGGATTGAAGAAGCTATGTGGGAGCCCGAGGATGCTATGAAAGAACAATACGCTAA
85264860 CCTTTTCAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.37, C:0.15, G:0.30, T:0.19
Consensus pattern (62 bp):
ATACGGGATTGAAGAAGCTATGTGGGAGCCCGAGGATGCTATGAAAGAACAATACGCTAATA
Found at i:85265925 original size:56 final size:56
Alignment explanation
Indices: 85265864--85265975 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
85265854 TTAGATCAAG
85265864 AAAGAAATAAATCATATTTGGATCGGGGGAAATCGAAAGTTGTCGAATAGTTGATC
1 AAAGAAATAAATCATATTTGGATCGGGGGAAATCGAAAGTTGTCGAATAGTTGATC
85265920 AAAGAAATAAATCATATTTGGATCGGGGGAAATCGAAAGTTGTCGAATAGTTGATC
1 AAAGAAATAAATCATATTTGGATCGGGGGAAATCGAAAGTTGTCGAATAGTTGATC
85265976 CGATACGTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (56 bp):
AAAGAAATAAATCATATTTGGATCGGGGGAAATCGAAAGTTGTCGAATAGTTGATC
Found at i:85266283 original size:43 final size:43
Alignment explanation
Indices: 85266236--85266317 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
85266226 TGTGTTTACA
* *
85266236 TGTAAGAACATGTC-AGGGACATTGGCATCGTTATATGATTTTG
1 TGTAAGAACACGTCTA-GGACATTGGCATCGATATATGATTTTG
* *
85266279 TGTAAGACCACGTCTAGGACGTTGGCATCGATATATGAT
1 TGTAAGAACACGTCTAGGACATTGGCATCGATATATGAT
85266318 AACATGTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.97
44 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGAACACGTCTAGGACATTGGCATCGATATATGATTTTG
Done.