Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 257 of 344
Found at i:85597457 original size:79 final size:79
Alignment explanation
Indices: 85597313--85597530 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 79
85597303 AAATCACGTA
* * * * *
85597313 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATAG
*
85597377 TAACTCGCACAATTG
65 TAACTCGCACAAATG
*
85597392 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCTCAAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATA
*
85597455 GTATCTCGCACAAATG
64 GTAACTCGCACAAATG
* * * *
85597471 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCTCAAATGCCTTCGGGACTTAGCCCGGA
85597531 CATCATTCAA
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:85597530 original size:40 final size:40
Alignment explanation
Indices: 85597327--85597530 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
85597317 CGGAATTTAA
** *
85597327 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
85597367 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
85597407 CCGGATTTAGTAACTCGCTCAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
85597446 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
85597486 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
85597526 CCGGA
1 CCGGA
85597531 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:85610621 original size:40 final size:40
Alignment explanation
Indices: 85610570--85611194 Score: 1081
Period size: 40 Copynumber: 15.6 Consensus size: 40
85610560 CATTTGAATG
85610570 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
85610610 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
85610650 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
85610690 ATATCCGGGATAAGACCCGAAGGCATTTGTGTGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
85610730 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
85610770 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
85610810 ATATCTGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
85610850 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
85610890 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
85610930 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
85610970 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
85611010 ATATCCAGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
85611050 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
85611090 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
85611130 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
85611170 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
85611195 ATTGAGCTTG
Statistics
Matches: 556, Mismatches: 27, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
39 2 0.00
40 553 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:85614623 original size:94 final size:94
Alignment explanation
Indices: 85614461--85614648 Score: 349
Period size: 94 Copynumber: 2.0 Consensus size: 94
85614451 CCATCTCAAG
*
85614461 ATAGCAAACACAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTTTTAT
1 ATAGCAAACACAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTAT
85614526 TGTAGCAATCAAACATTGACAATAAATTA
66 TGTAGCAATCAAACATTGACAATAAATTA
* *
85614555 ATAGCAAACACAACATTAATATCCAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTGT
1 ATAGCAAACACAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTAT
85614620 TGTAGCAATCAAACATTGACAATAAATTA
66 TGTAGCAATCAAACATTGACAATAAATTA
85614649 TGTCAAACAA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 91 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.30
Consensus pattern (94 bp):
ATAGCAAACACAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTAT
TGTAGCAATCAAACATTGACAATAAATTA
Found at i:85620480 original size:46 final size:46
Alignment explanation
Indices: 85620413--85620577 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
85620403 GCCCATAAGC
85620413 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
* *
85620459 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-CTC---T
1 GAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCCACAAGT
* * * *
85620505 CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
*
85620551 GAACT-GGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
85620578 ATGCCCAAAC
Statistics
Matches: 99, Mismatches: 8, Indels: 25
0.75 0.06 0.19
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
45 26 0.26
46 50 0.51
47 6 0.06
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
Found at i:85620526 original size:92 final size:92
Alignment explanation
Indices: 85620412--85620582 Score: 281
Period size: 92 Copynumber: 1.9 Consensus size: 92
85620402 CGCCCATAAG
* *
85620412 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACT-GGACTCAACTCA
85620477 ACGAGCTCGGATGCCTAGTTACATCTCT
65 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
85620505 CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTGGACTCAACTCAA
*
85620569 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
85620583 CAAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 26 0.36
92 40 0.55
93 7 0.10
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCT
Found at i:85620597 original size:45 final size:45
Alignment explanation
Indices: 85620456--85620597 Score: 121
Period size: 45 Copynumber: 3.1 Consensus size: 45
85620446 CGCATCCACA
* *
85620456 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACT-GGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * *
85620505 --CGAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
85620548 AGTGAACTGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
85620593 AGTGA
1 AGTGA
85620598 CATGTCACTT
Statistics
Matches: 72, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
43 8 0.11
45 31 0.43
46 24 0.33
47 5 0.07
48 4 0.06
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:85622896 original size:30 final size:30
Alignment explanation
Indices: 85622852--85622920 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
85622842 CAAAGATAAC
*
85622852 AAGAAAACC-GAATAAAGAAATCCA-AGATA
1 AAGAAACCCAGAATAAAGAAATCCAGA-ATA
* *
85622881 GAGAAACCCAGAATAAAGTAATCCAGAATA
1 AAGAAACCCAGAATAAAGAAATCCAGAATA
85622911 AAGAAACCCA
1 AAGAAACCCA
85622921 AGATATGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAGAATA
Found at i:85622908 original size:15 final size:15
Alignment explanation
Indices: 85622852--85622916 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
85622842 CAAAGATAAC
*
85622852 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
85622866 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
85622881 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
85622896 AAGTAATCCAGAATA
1 AAGAAATCCAGAATA
85622911 AAGAAA
1 AAGAAA
85622917 CCCAAGATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 9 0.22
15 31 0.76
16 1 0.02
ACGTcount: A:0.60, C:0.14, G:0.15, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:85626039 original size:93 final size:93
Alignment explanation
Indices: 85625880--85626052 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
85625870 CGCCCATAAG
* *
85625880 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCACAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCACAAGTGAACTCAGACTCAACTCA
85625945 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * * *
85625973 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCACAAGTGAACTCAGACTCAACTCA
*
85626038 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
85626053 CAAACATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCACAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:85626048 original size:46 final size:45
Alignment explanation
Indices: 85625873--85626048 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
85625863 TGTAACCCGC
* * *
85625873 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTC-CAT
* * *
85625919 CCACAAGTGAACTCAGACTCAACTCAACGAGCTCGG--ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCC-A--T
* *** *
85625965 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTC-CAT
*
85626012 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
85626049 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCCAT
Found at i:85628354 original size:14 final size:15
Alignment explanation
Indices: 85628335--85628398 Score: 71
Period size: 14 Copynumber: 4.4 Consensus size: 15
85628325 CAAAGATAAC
*
85628335 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
85628349 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
85628364 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
85628379 AAG-AATCCAGAATA
1 AAGAAATCCAGAATA
85628393 AAGAAA
1 AAGAAA
85628399 CCCAAGATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
14 22 0.54
15 18 0.44
16 1 0.02
ACGTcount: A:0.61, C:0.14, G:0.16, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:85628385 original size:29 final size:30
Alignment explanation
Indices: 85628335--85628402 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 30
85628325 CAAAGATAAC
*
85628335 AAGAAAACC-GAATAAAGAAATCCA-AGATA
1 AAGAAACCCAGAATAAAGAAATCCAGA-ATA
*
85628364 GAGAAACCCAGAATAAAG-AATCCAGAATA
1 AAGAAACCCAGAATAAAGAAATCCAGAATA
85628393 AAGAAACCCA
1 AAGAAACCCA
85628403 AGATATGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 25 0.74
30 9 0.26
ACGTcount: A:0.59, C:0.18, G:0.15, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAGAATA
Found at i:85631423 original size:46 final size:46
Alignment explanation
Indices: 85631353--85631519 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 46
85631343 GCCCATAAGC
*
85631353 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
* * * *
85631399 GAACTCGGACTCAACTCAATGAGCTCGATACCTAGTT-ACAT-CTC---T
1 GAACTCGGACTCAACTCAACGAGCTCG-GA-C--GTTCGCATCCACAAGT
* * *
85631444 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
*
85631491 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
85631520 TGCCCAAACA
Statistics
Matches: 99, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 80 0.81
47 1 0.01
48 3 0.03
49 3 0.03
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
Found at i:85631538 original size:46 final size:45
Alignment explanation
Indices: 85631445--85631530 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
85631435 TACATCTCTC
* * **
85631445 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCCCAAACATAAGT
85631491 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCCCAAACAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAAACAT
85631531 CCTAGTGATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 8 0.22
46 28 0.78
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAAACATAAGT
Found at i:85634763 original size:21 final size:21
Alignment explanation
Indices: 85634739--85634780 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
85634729 CATTTACCAG
*
85634739 AAATTAAACCTGCTCAAAACA
1 AAATTAAACCAGCTCAAAACA
*
85634760 AAATTAAACCAGCTCGAAACA
1 AAATTAAACCAGCTCAAAACA
85634781 TGCCAAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.24, G:0.07, T:0.17
Consensus pattern (21 bp):
AAATTAAACCAGCTCAAAACA
Found at i:85640030 original size:27 final size:27
Alignment explanation
Indices: 85640000--85640072 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
85639990 TTAGAAATCA
*
85640000 CCACAAAGATTATTCTTTCATAA-TCTG
1 CCACAAAGGTTATTCTTTCATAACTC-G
* *
85640027 CCACAATGGTTGTTCTTTCATAACTCG
1 CCACAAAGGTTATTCTTTCATAACTCG
* *
85640054 CCACGAAGGCTATTCTTTC
1 CCACAAAGGTTATTCTTTC
85640073 CTATCATTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 36 0.95
28 2 0.05
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (27 bp):
CCACAAAGGTTATTCTTTCATAACTCG
Found at i:85643515 original size:46 final size:44
Alignment explanation
Indices: 85643447--85643671 Score: 155
Period size: 46 Copynumber: 4.8 Consensus size: 44
85643437 TATTTGTGTG
* *
85643447 GCCAGTGTAAGACATGCCTGGGATATGCATCGGCCTCGAGATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT
* *
85643491 AAGCCAGTGTAAGACATGTTTGGGACATGTATCGGCCTCGAGATGT
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT
* ** * *
85643537 GTCAGTGTAAGACCATGTCTAAGACATGGCATCGGCAC-GGATATGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGATGT
* * * * **
85643583 GAGAGCTAGTGTAAGACCATGTCGGGGACATGGCGTCGGCCTTGATTTTGAT
1 ----GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATG-T
*
85643635 AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 -GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
85643672 ATTATACCCT
Statistics
Matches: 146, Mismatches: 23, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
44 11 0.08
45 11 0.08
46 53 0.36
47 1 0.01
49 34 0.23
50 32 0.22
51 3 0.02
52 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT
Found at i:85643660 original size:49 final size:50
Alignment explanation
Indices: 85643537--85643672 Score: 170
Period size: 49 Copynumber: 2.7 Consensus size: 50
85643527 CTCGAGATGT
**
85643537 GTCAGTGTAAGACCATGTCTAAGACATGGCATCGGCACGGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
* * * * *
85643587 G-CTAGTGTAAGACCATGTCGGGGACATGGCGTCGGC-CTTGAT-TTTGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGA
85643636 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
85643673 TTATACCCTA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
49 39 0.53
50 34 0.47
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
Found at i:85646979 original size:46 final size:46
Alignment explanation
Indices: 85646912--85647129 Score: 237
Period size: 46 Copynumber: 4.7 Consensus size: 46
85646902 GTTGCCAGTA
85646912 TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCTAGTG
* * * *
85646958 TAAGACATGTCTGAGACATGCATCAACCTCGAGATGTAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCTAGTG
* * *
85647004 TAAGACATGTCTGGGACATGCATCGGCTTCGAGATGT--G-TCAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCT-AGTG
* * * *
85647048 TAAGACCATGTCTCGGACATGGCATC-GACACAGATATGTGAGAGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAGCCTCA-AGATGT-A-AGCTAGTG
85647098 TAAGACCATGTCTGGGACATGGCATCAGCCTC
1 TAAGA-CATGTCTGGGACAT-GCATCAGCCTC
85647130 GATTTTGATA
Statistics
Matches: 144, Mismatches: 18, Indels: 15
0.81 0.10 0.08
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 85 0.59
50 30 0.21
51 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCTAGTG
Found at i:85647073 original size:92 final size:93
Alignment explanation
Indices: 85646905--85647166 Score: 293
Period size: 92 Copynumber: 2.8 Consensus size: 93
85646895 TATTTGTGTT
* *
85646905 GCCAGTATAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAG-CTAGTGTAAGA-CATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGT-AGTC-AGTGTAAGACCATGT
*
85646968 CTGAGACATGCATCAAC-CTCGAGATGT-A-A
64 CTG-GACATGCATCAACAC-AGAGATGTGAGA
* *
85646997 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATGT-GTCAGTGTAAGACCATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAGTCAGTGTAAGACCATGTCT
* *
85647061 CGGACATGGCATCGACACAGATATGTGAGA
66 -GGACAT-GCATCAACACAGAGATGTGAGA
* **
85647091 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATTTTGATAGTCAGTGTAAGACCAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGA-GATG-TAGTCAGTGTAAGACCAT
85647156 GTCTGGGACAT
62 GTCT-GGACAT
85647167 AAAGTCGACT
Statistics
Matches: 145, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
90 10 0.07
91 13 0.09
92 54 0.37
93 2 0.01
94 12 0.08
95 14 0.10
96 11 0.08
97 2 0.01
98 1 0.01
99 26 0.18
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (93 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAGTCAGTGTAAGACCATGTCT
GGACATGCATCAACACAGAGATGTGAGA
Found at i:85647105 original size:50 final size:49
Alignment explanation
Indices: 85647041--85647215 Score: 173
Period size: 50 Copynumber: 3.6 Consensus size: 49
85647031 TTCGAGATGT
*
85647041 GTCAGTGTAAGACCATGTCTCGGACATGGCATC-GACACAGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGACAC-GAT-TGTGAGA
* * * *
85647091 G-CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATTTTGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCAGACACGATTGTGAGA
** **
85647140 GTCAGTGTAAGACCATGTCTGGGACAT-AAAGTC-GACTTGA-TG-GATGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCA-TCAGACACGATTGTGA-GA
*
85647187 GCCAGTGTAAGACCATGTCTGGGACATGG
1 GTCAGTGTAAGACCATGTCTGGGACATGG
85647216 TATCGGCATT
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
46 2 0.02
47 28 0.26
48 6 0.06
49 33 0.31
50 34 0.32
51 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGACACGATTGTGAGA
Found at i:85647215 original size:96 final size:95
Alignment explanation
Indices: 85646905--85647215 Score: 274
Period size: 92 Copynumber: 3.3 Consensus size: 95
85646895 TATTTGTGTT
* *
85646905 GCCAGTATAAGA-CATGTCTGGGACAT-GCATCAGCCTCAAGATGTAAG-CTAGTGTAAGA-CAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGT--GTC-AGTGTAAGACCAT
* * *
85646966 GTCT-GAGACATG-CATCAAC-CTCGAGATGT-A-A
63 GTCTCG-GACATGAAATCGACAC-AGA-ATGTGAGA
* *
85646997 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTCGAGATGTGTCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTGTCAGTGTAAGACCATGTC
**
85647060 TCGGACATGGCATCGACACAGATATGTGAGA
66 TCGGACATGAAATCGACACAGA-ATGTGAGA
* **
85647091 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATTTTGATAGTCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGA-GATG-T-GTCAGTGTAAGACCAT
* **
85647156 GTCTGGGACAT-AAAGTCGAC-TTG-ATG-GATGA
63 GTCTCGGACATGAAA-TCGACACAGAATGTGA-GA
85647187 GCCAGTGTAAGACCATGTCTGGGACATGG
1 GCCAGTGTAAGACCATGTCTGGGACATGG
85647216 TATCGGCATT
Statistics
Matches: 187, Mismatches: 18, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
90 10 0.05
91 14 0.07
92 53 0.28
93 2 0.01
94 12 0.06
95 16 0.09
96 44 0.24
97 2 0.01
98 3 0.02
99 31 0.17
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (95 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTGTCAGTGTAAGACCATGTC
TCGGACATGAAATCGACACAGAATGTGAGA
Found at i:85650565 original size:79 final size:80
Alignment explanation
Indices: 85650421--85650638 Score: 232
Period size: 79 Copynumber: 2.7 Consensus size: 80
85650411 AAATCACGTA
* * * ** * *
85650421 CCTTCGGAATTTAACCGGATATAGTTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
*
85650485 TAACTCGCACAATTG
66 TAACTCGCACAAATG
*
85650500 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
*
85650563 GTATCTCGCACAAATG
65 GTAACTCGCACAAATG
* * *
85650579 CCTTC-GGATCTTAGTCCGGATAT-GATCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAG-TAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
85650639 CATCATTCAA
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 4 0.03
79 65 0.55
80 49 0.42
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
TAACTCGCACAAATG
Found at i:85650638 original size:40 final size:41
Alignment explanation
Indices: 85650435--85650638 Score: 226
Period size: 40 Copynumber: 5.1 Consensus size: 41
85650425 CGGAATTTAA
* ** *
85650435 CCGGATA-TAGTTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
85650475 CCGGTTA-TAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
85650515 CCGGAT-TTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
85650554 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
85650594 CCGGATATGA-TCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
85650634 CCGGA
1 CCGGA
85650639 CATCATTCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.65
41 14 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:85658644 original size:79 final size:81
Alignment explanation
Indices: 85658508--85658692 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
85658498 TTGAATGATG
* *
85658508 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
85658572 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
85658587 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
85658649 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
85658667 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85658693 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:85658706 original size:40 final size:40
Alignment explanation
Indices: 85658509--85658692 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
85658499 TGAATGATGT
* * * *
85658509 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
85658549 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
85658589 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
85658627 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
85658668 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85658693 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:85658714 original size:79 final size:79
Alignment explanation
Indices: 85658561--85658725 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
85658551 GGACTAAGAT
* * **
85658561 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
85658626 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
85658640 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
85658703 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
85658719 CCGAAGG
1 CCGAAGG
85658726 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:85665951 original size:79 final size:81
Alignment explanation
Indices: 85665815--85665999 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
85665805 TTGAATGATG
* *
85665815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
85665879 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
85665894 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
85665956 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
85665974 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85666000 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:85666013 original size:40 final size:41
Alignment explanation
Indices: 85665815--85665999 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
85665805 TTGAATGATG
* * *
85665815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
85665855 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
85665895 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
85665934 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
85665975 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85666000 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:85666021 original size:79 final size:79
Alignment explanation
Indices: 85665868--85666032 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
85665858 GGACTAAGAT
* * **
85665868 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
85665933 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
85665947 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* * *
85666010 TATATTC-GGTTAAATT
63 TAAATCCGGGTTAAATC
85666026 CCGAAGG
1 CCGAAGG
85666033 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:85667956 original size:49 final size:50
Alignment explanation
Indices: 85667899--85667996 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 50
85667889 TTTAATATGT
* *
85667899 TTAGTTTAATTAATTCAGTTGTTTT-AATTTTCCTTAATTGCTTAAATAC
1 TTAGTTTAATTAATTAAATTGTTTTGAATTTTCCTTAATTGCTTAAATAC
* *
85667948 TTAGTTTAATTAATTAAATTGTTTTGAATTTTCTTTAGTTGCTTAAATA
1 TTAGTTTAATTAATTAAATTGTTTTGAATTTTCCTTAATTGCTTAAATA
85667997 ATTCCGGCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 23 0.52
50 21 0.48
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.54
Consensus pattern (50 bp):
TTAGTTTAATTAATTAAATTGTTTTGAATTTTCCTTAATTGCTTAAATAC
Found at i:85670453 original size:12 final size:12
Alignment explanation
Indices: 85670436--85670467 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
85670426 TGACCCGCCC
85670436 ATATTAATTTTT
1 ATATTAATTTTT
85670448 ATATT-ATTTTT
1 ATATTAATTTTT
85670459 ATA-TAATTT
1 ATATTAATTT
85670468 AATAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:85670626 original size:30 final size:30
Alignment explanation
Indices: 85670590--85670652 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
85670580 ACTTAACAAT
85670590 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
85670620 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
85670650 CAA
1 CAA
85670653 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:85671589 original size:20 final size:21
Alignment explanation
Indices: 85671540--85671612 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
85671530 GGGTCAACAT
*
85671540 ACCCATGTGAAGAAGGCACAC
1 ACCCGTGTGAAGAAGGCACAC
85671561 ACCCGTGTGAAGAA-GCACAC
1 ACCCGTGTGAAGAAGGCACAC
* * *
85671581 TCTCC-TGTGAGGGGAGGCACAC
1 AC-CCGTGTGA-AGAAGGCACAC
*
85671603 AACCGTGTGA
1 ACCCGTGTGA
85671613 CTATGACACA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
20 12 0.29
21 19 0.45
22 11 0.26
ACGTcount: A:0.30, C:0.27, G:0.29, T:0.14
Consensus pattern (21 bp):
ACCCGTGTGAAGAAGGCACAC
Found at i:85678519 original size:29 final size:27
Alignment explanation
Indices: 85678475--85678536 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 27
85678465 AGTTATATCG
*
85678475 ATTTGGCTTCAAGCCATGCATATCAGCTA
1 ATTTGGCTTCAAGCCACG-ATATCAG-TA
**
85678504 ATTTGGCTTCGGGCCACGATATCAGTA
1 ATTTGGCTTCAAGCCACGATATCAGTA
*
85678531 CTTTGG
1 ATTTGG
85678537 AGATAAGTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 7 0.24
28 7 0.24
29 15 0.52
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (27 bp):
ATTTGGCTTCAAGCCACGATATCAGTA
Found at i:85687476 original size:43 final size:43
Alignment explanation
Indices: 85687411--85687534 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
85687401 AGCTCGCACA
* * * *
85687411 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATAT-TG
1 ATGCCATGTCCCAGAAATGGTCTTACATGTAATCACATATACG
* * * *
85687453 ATGCCACTGTCCCAGAAAAGGTCTTACACGAAATCATA-ATACG
1 ATGCCA-TGTCCCAGAAATGGTCTTACATGTAATCACATATACG
*
85687496 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCC-ATGTCCCAGAAATGGTCTTACATGTAATCACAT
85687535 CTCGATAACC
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
42 8 0.12
43 56 0.86
44 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCATGTCCCAGAAATGGTCTTACATGTAATCACATATACG
Found at i:85689291 original size:21 final size:20
Alignment explanation
Indices: 85689265--85689307 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
85689255 GGAATTTGAA
85689265 TTGAGT-AGTTGAGGGAGTGGT
1 TTGAGTGAGTTGA-GGAG-GGT
*
85689286 TTGAGTGATTTGAGGAGGGT
1 TTGAGTGAGTTGAGGAGGGT
85689306 TT
1 TT
85689308 TTAGGAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (20 bp):
TTGAGTGAGTTGAGGAGGGT
Found at i:85690814 original size:27 final size:27
Alignment explanation
Indices: 85690776--85690957 Score: 231
Period size: 27 Copynumber: 6.7 Consensus size: 27
85690766 CGTACCTGAA
*
85690776 CCCTCATGTGATAAAATGACGATTTTT
1 CCCTCATGTGATAAAATGACGATTTTG
* *
85690803 CCCTCATGTGATAAAATTACAATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
*
85690830 CCCTCATGTGATAAAATGATGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
*
85690857 CCCTCATGTGATAAAATGATGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* * **
85690884 CCTTCATGTGCTAAAATGAAAATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* * *
85690911 CCCTTATGTGATAAAATGAGGATTTTA
1 CCCTCATGTGATAAAATGACGATTTTG
*
85690938 CCCTCATAG-GGTAAAATGAC
1 CCCTCAT-GTGATAAAATGAC
85690958 CGAAATACCC
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 134 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (27 bp):
CCCTCATGTGATAAAATGACGATTTTG
Found at i:85690911 original size:81 final size:81
Alignment explanation
Indices: 85690775--85690957 Score: 260
Period size: 81 Copynumber: 2.3 Consensus size: 81
85690765 GCGTACCTGA
* * *
85690775 ACCCTCATGTGATAAAATGACGATTTTTCCCTCATGTGATAAAATTACAATTTTGCCCTCATGTG
1 ACCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGAAAATTTTGCCCTCATGTG
*
85690840 ATAAAATGATGATTTT
66 ATAAAATGAGGATTTT
* * * * *
85690856 GCCCTCATGTGATAAAATGATGATTTTGCCTTCATGTGCTAAAATGAAAATTTTGCCCTTATGTG
1 ACCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGAAAATTTTGCCCTCATGTG
85690921 ATAAAATGAGGATTTT
66 ATAAAATGAGGATTTT
*
85690937 ACCCTCATAG-GGTAAAATGAC
1 ACCCTCAT-GTGATAAAATGAC
85690958 CGAAATACCC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 88 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (81 bp):
ACCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGAAAATTTTGCCCTCATGTG
ATAAAATGAGGATTTT
Found at i:85690966 original size:27 final size:27
Alignment explanation
Indices: 85690944--85691011 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
85690934 TTTACCCTCA
*
85690944 TAGGGTAAAATGACCGAAATACCCCTG
1 TAGGGTAAAATGACCGAAATACCCCGG
* *
85690971 TAGGGTAAAATGACTGTAATACCCCGG
1 TAGGGTAAAATGACCGAAATACCCCGG
*
85690998 TAAGGTAAAATGAC
1 TAGGGTAAAATGAC
85691012 AGATTTGTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (27 bp):
TAGGGTAAAATGACCGAAATACCCCGG
Found at i:85692453 original size:29 final size:29
Alignment explanation
Indices: 85692386--85692510 Score: 180
Period size: 29 Copynumber: 4.3 Consensus size: 29
85692376 AAGTCTACAT
*
85692386 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
85692414 TCATTCATATGGCCCACTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* * *
85692443 ACATTCGTATGGCCCATTAGGCCCAGATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
**
85692472 ACATTCATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
85692501 ACATTCATAT
1 ACATTCATAT
85692511 ACATGCTTTC
Statistics
Matches: 87, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 22 0.25
29 65 0.75
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:85692744 original size:16 final size:16
Alignment explanation
Indices: 85692720--85692757 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
85692710 GTAGCCAAAC
85692720 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
* *
85692736 TTTCGGCTTTTCGGTA
1 TTTCAGCTTTTCGGCA
85692752 TTTCAG
1 TTTCAG
85692758 GATTTGCTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:85701331 original size:85 final size:85
Alignment explanation
Indices: 85701188--85701366 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
85701178 GGCCGGCCAT
85701188 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
85701253 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
85701273 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
85701338 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
85701358 GGGCATGGG
1 GAGCATGGG
85701367 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:85702688 original size:47 final size:47
Alignment explanation
Indices: 85702634--85703038 Score: 577
Period size: 47 Copynumber: 8.6 Consensus size: 47
85702624 TATTTGAATA
*
85702634 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
85702681 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
85702730 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
85702777 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
85702824 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
85702871 AATGTGAACATGTGTATGTA--TGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-A-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
85702918 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
85702965 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
85703012 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
85703039 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 24, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 267 0.82
48 1 0.00
49 51 0.16
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:85707604 original size:12 final size:12
Alignment explanation
Indices: 85707583--85707622 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
85707573 AGCTTTAAAA
*
85707583 CTTTTGTTTTTC
1 CTTTTCTTTTTC
85707595 CTTTTCTTTTT-
1 CTTTTCTTTTTC
85707606 CTTTTCTTCTTTC
1 CTTTTCTT-TTTC
85707619 CTTT
1 CTTT
85707623 CTCCCTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 8 0.32
12 13 0.52
13 4 0.16
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.75
Consensus pattern (12 bp):
CTTTTCTTTTTC
Found at i:85707727 original size:3 final size:3
Alignment explanation
Indices: 85707712--85707760 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
85707702 ATATATTAGT
* *
85707712 TAA TAA TAT TAA TAA TAA TACA TTA TAA TAA TAA T-A TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
85707756 TAA TA
1 TAA TA
85707761 TTTAATTCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:85707742 original size:16 final size:16
Alignment explanation
Indices: 85707716--85707760 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
85707706 ATTAGTTAAT
85707716 AATATTAATAATAATAC
1 AATA-TAATAATAATAC
* *
85707733 ATTATAATAATAATAT
1 AATATAATAATAATAC
85707749 AATATAATAATA
1 AATATAATAATA
85707761 TTTAATTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AATATAATAATAATAC
Found at i:85707758 original size:13 final size:14
Alignment explanation
Indices: 85707712--85707761 Score: 61
Period size: 13 Copynumber: 3.6 Consensus size: 14
85707702 ATATATTAGT
85707712 TAATAATATTAATAA
1 TAATAATA-TAATAA
85707727 TAATACAT-T-ATAA
1 TAATA-ATATAATAA
85707740 TAATAATATAAT-A
1 TAATAATATAATAA
85707753 TAATAATAT
1 TAATAATAT
85707762 TTAATTCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.06
13 20 0.62
14 3 0.09
15 5 0.16
16 2 0.06
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATAATATAATAA
Found at i:85707929 original size:24 final size:23
Alignment explanation
Indices: 85707879--85707931 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 23
85707869 TTGTCTTCAT
85707879 TTTAATAATTTAATATAAAACTA
1 TTTAATAATTTAATATAAAACTA
*
85707902 --TAATAATTATAATA-AATATCTA
1 TTTAATAATT-TAATATAA-AACTA
85707924 TTTAATAA
1 TTTAATAA
85707932 CAAATACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 10 0.40
22 9 0.36
24 6 0.24
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTAATAATTTAATATAAAACTA
Found at i:85709731 original size:43 final size:43
Alignment explanation
Indices: 85709643--85709807 Score: 197
Period size: 43 Copynumber: 3.8 Consensus size: 43
85709633 ACATATCGAC
* * * *
85709643 GCCATTGTCCCAGACAGGGTCTTACACGAAATC-GAATAACGAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCACAAT-ACAAT
* * *
85709686 GCCAATGTTCCAGACAGGGTATTACGCGTAATCACAATACAAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACAAT
* *
85709729 GCCAATGTCCCAGACATGGTCTTACATGTAATCACAATACAAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACAAT
* * * *
85709772 GCCAACGTCCCAAACATGGTCTTACATGTAATCACA
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCACA
85709808 TCTAGATAAC
Statistics
Matches: 107, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 104 0.97
44 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (43 bp):
GCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACAAT
Found at i:85714382 original size:28 final size:29
Alignment explanation
Indices: 85714339--85714407 Score: 122
Period size: 28 Copynumber: 2.4 Consensus size: 29
85714329 TACATACATG
*
85714339 CATATGGCCCACTAGGCCCAAATT-CATT
1 CATATGGCCCATTAGGCCCAAATTGCATT
85714367 CATATGGCCCATTAGGCCCAAATTGCATT
1 CATATGGCCCATTAGGCCCAAATTGCATT
85714396 CATATGGCCCAT
1 CATATGGCCCAT
85714408 CCGTCCCGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 23 0.59
29 16 0.41
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATTGCATT
Found at i:85714691 original size:8 final size:8
Alignment explanation
Indices: 85714640--85714698 Score: 55
Period size: 8 Copynumber: 7.4 Consensus size: 8
85714630 GTAGCCAGAC
*
85714640 TTTCGGCT
1 TTTCGGCA
*
85714648 TTTTGGCA
1 TTTCGGCA
*
85714656 TTTCGGCT
1 TTTCGGCA
*
85714664 TTTCGGTA
1 TTTCGGCA
* *
85714672 TATCGACA
1 TTTCGGCA
85714680 TTTCGGCA
1 TTTCGGCA
*
85714688 TTTCGGGA
1 TTTCGGCA
85714696 TTT
1 TTT
85714699 GTCGATCTAA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
8 39 1.00
ACGTcount: A:0.12, C:0.19, G:0.24, T:0.46
Consensus pattern (8 bp):
TTTCGGCA
Found at i:85718165 original size:29 final size:28
Alignment explanation
Indices: 85718116--85718198 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 28
85718106 TACGGCCCAC
* *
85718116 TAGGCCC-AATCTCAGTCATATGGCCAAT
1 TAGGCCCAAATCACAATCATATGGCC-AT
*
85718144 TAGGCCCAAATCACATTCATATGGCTCAT
1 TAGGCCCAAATCACAATCATATGGC-CAT
85718173 TAGGCCCAAATCACAATCATATGGCC
1 TAGGCCCAAATCACAATCATATGGCC
85718199 CATCCAATCG
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
28 8 0.16
29 41 0.82
30 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (28 bp):
TAGGCCCAAATCACAATCATATGGCCAT
Found at i:85724359 original size:43 final size:43
Alignment explanation
Indices: 85724218--85724363 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
85724208 CATATCCCAA
* * * *
85724218 TCTTACATGTTATCAC-ATATCGATGCCATTGTCCCAGACAGGG
1 TCTTACACGTAATCACAATA-CGATGCCAATGTCCCAGACATGG
* * *
85724261 TCTTAGACGAAATCA-AATAACGATGCCAATGTTCCAGACATGG
1 TCTTACACGTAATCACAAT-ACGATGCCAATGTCCCAGACATGG
* * *
85724304 TATTACACGTAATCACAATACAATGCCAATGTCCCAAACATGG
1 TCTTACACGTAATCACAATACGATGCCAATGTCCCAGACATGG
*
85724347 TCTTACATGTAATCACA
1 TCTTACACGTAATCACA
85724364 TCTCGATAAC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
43 81 0.95
44 4 0.05
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
TCTTACACGTAATCACAATACGATGCCAATGTCCCAGACATGG
Found at i:85727254 original size:48 final size:48
Alignment explanation
Indices: 85727196--85727369 Score: 260
Period size: 48 Copynumber: 3.6 Consensus size: 48
85727186 TGATCCCGTA
* *
85727196 TAAGACCATGTTTGGGATATGGCATCGGCATCGTTATGTGAGCTAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* *
85727244 TAAGACCATGTCTGGGACATGGCATCAGCATCGTTATGTGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* * * **
85727292 TAAGACAATGTTTAGGACATGGCATCGACATCGTTATGTGAGCCAACG
1 TAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
85727340 TAAGACCATGTTTGGGACAT-GCATCGGCAT
1 TAAGACCATGTTTGGGACATGGCATCGGCAT
85727370 GAGGCATCAT
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 9 0.08
48 103 0.92
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
Found at i:85729116 original size:12 final size:13
Alignment explanation
Indices: 85729099--85729136 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
85729089 TTCCTGGAAT
85729099 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
85729111 ATTAAGAACACATA
1 ATTAAGAACA-AGA
85729125 ATTAAGAACAAG
1 ATTAAGAACAAG
85729137 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:85731642 original size:25 final size:24
Alignment explanation
Indices: 85731596--85731647 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
85731586 CCTAAAATTG
85731596 AAATAATATTAAAGGAAAATAAAAT
1 AAATAATATTAAAGGAAAAT-AAAT
* *
85731621 AAATAGTACTTAAA-GAAGATAAAT
1 AAATAATA-TTAAAGGAAAATAAAT
85731645 AAA
1 AAA
85731648 GATAAAAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.29
25 12 0.50
26 5 0.21
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.23
Consensus pattern (24 bp):
AAATAATATTAAAGGAAAATAAAT
Found at i:85733014 original size:43 final size:43
Alignment explanation
Indices: 85732967--85733097 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 43
85732957 TAAGATAGTT
85732967 TCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATG
1 TCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATG
** * ** * * * *
85733010 TCTGGGACATTGGCGTCGTATCT-ATTTTTTCTTGTAAGACCGTG
1 TCTGGGACACAGGCCTCG-AT-TGAGATTTACGTATAAGACCATG
*
85733054 TCTGGGACACAGGCCTCGATTGAGATTTACGTATAAAACCATG
1 TCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATG
85733097 T
1 T
85733098 ATGCGACATC
Statistics
Matches: 66, Mismatches: 19, Indels: 6
0.73 0.21 0.07
Matches are distributed among these distances:
42 1 0.02
43 32 0.48
44 32 0.48
45 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (43 bp):
TCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATG
Found at i:85733163 original size:87 final size:85
Alignment explanation
Indices: 85732971--85733158 Score: 234
Period size: 87 Copynumber: 2.2 Consensus size: 85
85732961 ATAGTTTCTG
* * * * * *
85732971 GGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGACATTGGCGTCGTATCTATT
1 GGACACAGGCATCGATTGAGATTTACGTATAAAACCATGTATGCGACATCGGCATCGTATCTA--
* * *
85733036 TTTTCTTGTAAGACCGTGTCTG
64 TTTTCATGTAAGACCCTGTCTA
*
85733058 GGACACAGGCCTCGATTGAGATTTACGTATAAAACCATGTATGCGACATCGGCATCGTATCTGA-
1 GGACACAGGCATCGATTGAGATTTACGTATAAAACCATGTATGCGACATCGGCATCGTATCT-AT
85733122 TTTCATGTAAGACCCTGTCTA
65 TTTCATGTAAGACCCTGTCTA
* *
85733143 GGATAGAGGCATCGAT
1 GGACACAGGCATCGAT
85733159 ATTGAATTAC
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
85 31 0.35
87 57 0.64
88 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (85 bp):
GGACACAGGCATCGATTGAGATTTACGTATAAAACCATGTATGCGACATCGGCATCGTATCTATT
TTCATGTAAGACCCTGTCTA
Found at i:85745300 original size:12 final size:13
Alignment explanation
Indices: 85745283--85745320 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
85745273 TTCCTGGTAT
85745283 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
85745295 ATTAAGAACACATA
1 ATTAAGAACA-AGA
85745309 ATTAAGAACAAG
1 ATTAAGAACAAG
85745321 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:85746250 original size:23 final size:24
Alignment explanation
Indices: 85746194--85746252 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
85746184 AAATAAATTA
* *
85746194 TTTTATAACAAGTGTACATATATC
1 TTTTATTACAAATGTACATATATC
85746218 TATTTATTACAAATGTACCA-ATAT-
1 T-TTTATTACAAATGTA-CATATATC
85746242 TTTTATTACAA
1 TTTTATTACAA
85746253 TTGTCATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.32
24 2 0.06
25 17 0.55
26 2 0.06
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (24 bp):
TTTTATTACAAATGTACATATATC
Found at i:85746475 original size:3 final size:3
Alignment explanation
Indices: 85746467--85746514 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
85746457 TTAATTTATT
* * * *
85746467 TAA TAA TAA TAA TAA TAA T-A TAG TTA TAA TAA TAC TAC TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
85746514 T
1 T
85746515 TAAATCTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:85748294 original size:28 final size:28
Alignment explanation
Indices: 85748258--85748346 Score: 142
Period size: 28 Copynumber: 3.2 Consensus size: 28
85748248 TACTATTATA
85748258 CCCTATGTATGCAAAATTACCATAATAC
1 CCCTATGTATGCAAAATTACCATAATAC
85748286 CCCTATGTATGCAAAATTACCATAATAC
1 CCCTATGTATGCAAAATTACCATAATAC
* * * *
85748314 CTCTATGTATGCAAAATGACCTTTATAC
1 CCCTATGTATGCAAAATTACCATAATAC
85748342 CCCTA
1 CCCTA
85748347 GGGTTAATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (28 bp):
CCCTATGTATGCAAAATTACCATAATAC
Found at i:85748510 original size:27 final size:27
Alignment explanation
Indices: 85748452--85748541 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
85748442 AGGAAGCGTC
85748452 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
85748480 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
85748507 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
85748536 CTGGTG
1 CTGGTG
85748542 ACTCCGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:85749033 original size:18 final size:18
Alignment explanation
Indices: 85748994--85749034 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
85748984 TAATAAGGCC
* *
85748994 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
85749012 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
85749030 TTTTA
1 TTTTA
85749035 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:85753045 original size:23 final size:24
Alignment explanation
Indices: 85753005--85753051 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
85752995 TGAAATACAT
85753005 GAAAATGATGATACATGATATATG
1 GAAAATGATGATACATGATATATG
85753029 GAAATATGA-GATA-ATGATATATG
1 GAAA-ATGATGATACATGATATATG
85753052 AACATGGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.45
24 8 0.36
25 4 0.18
ACGTcount: A:0.47, C:0.02, G:0.21, T:0.30
Consensus pattern (24 bp):
GAAAATGATGATACATGATATATG
Found at i:85753302 original size:35 final size:35
Alignment explanation
Indices: 85753253--85753322 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
85753243 ACATGGAAAG
*
85753253 TATATGTACGTGGAAATCTAATTATTATTGAGCCC
1 TATATGTACATGGAAATCTAATTATTATTGAGCCC
85753288 TATATGTACATGGAAATCTAATTATTATTGAGCCC
1 TATATGTACATGGAAATCTAATTATTATTGAGCCC
85753323 ATACATGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (35 bp):
TATATGTACATGGAAATCTAATTATTATTGAGCCC
Found at i:85755755 original size:262 final size:262
Alignment explanation
Indices: 85755290--85755812 Score: 1028
Period size: 262 Copynumber: 2.0 Consensus size: 262
85755280 CGAGTTCACT
85755290 TATGGGCGGGTTACATGGTAGCTTGGCTACATAAGTTCCGCAGGCTATTGAGTTTGTCTAGCTAC
1 TATGGGCGGGTTACATGGTAGCTTGGCTACATAAGTTCCGCAGGCTATTGAGTTTGTCTAGCTAC
85755355 GGGTATGGCAAAATACTCACTTTGTGTAAATGATTTTATGACATGGTTATGGTTTGGTAAGAAAA
66 GGGTATGGCAAAATACTCACTTTGTGTAAATGATTTTATGACATGGTTATGGTTTGGTAAGAAAA
85755420 GGGTTTGTGAATGATTAGCCATTGGAATGGCCAATATAAATCATATTTGATGCCATGTATGTTTA
131 GGGTTTGTGAATGATTAGCCATTGGAATGGCCAATATAAATCATATTTGATGCCATGTATGTTTA
85755485 AAATGCTATTTAGTCTATGGAAATCTATAGTAAAGTGAAATTTGTTATAAAACAGAATATTGCTG
196 AAATGCTATTTAGTCTATGGAAATCTATAGTAAAGTGAAATTTGTTATAAAACAGAATATTGCTG
85755550 TG
261 TG
85755552 TATGGGCGGGTTACATGGTAGCTTGGCTACATAAGTTCCGCAGGCTATTGAGTTTGTCTAGCTAC
1 TATGGGCGGGTTACATGGTAGCTTGGCTACATAAGTTCCGCAGGCTATTGAGTTTGTCTAGCTAC
*
85755617 GGGTATGGCAAAATACTCACTTTTTGTAAATGATTTTATGACATGGTTATGGTTTGGTAAGAAAA
66 GGGTATGGCAAAATACTCACTTTGTGTAAATGATTTTATGACATGGTTATGGTTTGGTAAGAAAA
*
85755682 GGGTTTGTGAATGATTAGCCATTGGAATGGCCAATCTAAATCATATTTGATGCCATGTATGTTTA
131 GGGTTTGTGAATGATTAGCCATTGGAATGGCCAATATAAATCATATTTGATGCCATGTATGTTTA
85755747 AAATGCTATTTAGTCTATGGAAATCTATAGTAAAGTGAAATTTGTTATAAAACAGAATATTGCTG
196 AAATGCTATTTAGTCTATGGAAATCTATAGTAAAGTGAAATTTGTTATAAAACAGAATATTGCTG
85755812 T
261 T
85755813 AGCAATGATG
Statistics
Matches: 259, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
262 259 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.35
Consensus pattern (262 bp):
TATGGGCGGGTTACATGGTAGCTTGGCTACATAAGTTCCGCAGGCTATTGAGTTTGTCTAGCTAC
GGGTATGGCAAAATACTCACTTTGTGTAAATGATTTTATGACATGGTTATGGTTTGGTAAGAAAA
GGGTTTGTGAATGATTAGCCATTGGAATGGCCAATATAAATCATATTTGATGCCATGTATGTTTA
AAATGCTATTTAGTCTATGGAAATCTATAGTAAAGTGAAATTTGTTATAAAACAGAATATTGCTG
TG
Found at i:85768733 original size:9 final size:9
Alignment explanation
Indices: 85768719--85768747 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
85768709 AAGTATCCAA
85768719 AGAAAGATT
1 AGAAAGATT
85768728 AGAAAGATT
1 AGAAAGATT
85768737 AGAAAGATT
1 AGAAAGATT
85768746 AG
1 AG
85768748 TCCAAATGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (9 bp):
AGAAAGATT
Found at i:85768945 original size:15 final size:14
Alignment explanation
Indices: 85768925--85768960 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
85768915 ATTCAAAAAA
85768925 TATTTTATCACTTTT
1 TATTTTATCAC-TTT
85768940 TATTTTTATCACTTT
1 TA-TTTTATCACTTT
85768955 TATTTT
1 TATTTT
85768961 TTGCTTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.20
15 7 0.35
16 9 0.45
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.69
Consensus pattern (14 bp):
TATTTTATCACTTT
Found at i:85768962 original size:16 final size:16
Alignment explanation
Indices: 85768927--85768961 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
85768917 TCAAAAAATA
85768927 TTTTATCACTTTTTAT
1 TTTTATCACTTTTTAT
85768943 TTTTATCAC-TTTTAT
1 TTTTATCACTTTTTAT
85768958 TTTT
1 TTTT
85768962 TGCTTTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTATCACTTTTTAT
Found at i:85771638 original size:40 final size:41
Alignment explanation
Indices: 85771579--85771687 Score: 100
Period size: 40 Copynumber: 2.7 Consensus size: 41
85771569 AGCGGCGCTT
* * *
85771579 TTAGCGGTGTTTGTACAAAAAAATCCGCTAGAGTTC-AGCA
1 TTAGCGGCGTTTTTACAAAAAAATCCGCTAGAGATCAAGCA
* * *
85771619 TTAGCGGCGTTTTTTC--AAAAGTGCCGCTATAGATCAAGCA
1 TTAGCGGCGTTTTTACAAAAAAAT-CCGCTAGAGATCAAGCA
** *
85771659 TTAGCGGCACTTTTGCAAAAAAA-CCGCTA
1 TTAGCGGCGTTTTTACAAAAAAATCCGCTA
85771688 ATAATTTCTG
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
38 5 0.09
39 10 0.18
40 36 0.65
42 4 0.07
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (41 bp):
TTAGCGGCGTTTTTACAAAAAAATCCGCTAGAGATCAAGCA
Found at i:85771953 original size:116 final size:114
Alignment explanation
Indices: 85771658--85772034 Score: 558
Period size: 116 Copynumber: 3.3 Consensus size: 114
85771648 TAGATCAAGC
* * * * *
85771658 ATTAGCGGCACTTTTGCAAAAAA-ACCGCTAATAATTTCTGCAAGACGCAGTCGTTTCGTTTCGA
1 ATTAGCGGC-GTTTTACAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGG
*
85771722 CCCTTAGTTTCATTAGCGGCGTTTCTAAAAAACGCCACTAAAGGTTGAGT
65 CCCTTAGTTTTATTAGCGGCGTTTCTAAAAAACGCCACTAAAGGTTGAGT
** *
85771772 ATTAGCGGCGCTTTTACAAAAAAAACGCCATTAATAATTTCAGCAAGACGTAGTCGTTTCGTTTC
1 ATTAGCGGCG-TTTTAC--AAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTC
*
85771837 GGCCCTTAGTTTTATTAGCGGCATTTCTAAAAAAACGCCACTAAAGGTTGAGT
63 GGCCCTTAGTTTTATTAGCGGCGTTTCT-AAAAAACGCCACTAAAGGTTGAGT
*
85771890 ATTAGTGGCGATTTTACAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGG
1 ATTAGCGGCG-TTTTACAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGG
*
85771955 CCCTTAGTTTTATTAGCGGTGTTTCTAAAAAACGCCACTAAAGGTTGAGT
65 CCCTTAGTTTTATTAGCGGCGTTTCTAAAAAACGCCACTAAAGGTTGAGT
** *
85772005 ATTAGCGGCGTTTTTTAACAAACGCCGCTA
1 ATTAGCGGCGTTTTACAAAAAACGCCGCTA
85772035 TAGGTTGACC
Statistics
Matches: 237, Mismatches: 21, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
114 31 0.13
115 33 0.14
116 75 0.32
117 59 0.25
118 39 0.16
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (114 bp):
ATTAGCGGCGTTTTACAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGGC
CCTTAGTTTTATTAGCGGCGTTTCTAAAAAACGCCACTAAAGGTTGAGT
Found at i:85772040 original size:40 final size:40
Alignment explanation
Indices: 85771965--85772064 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
85771955 CCCTTAGTTT
* *
85771965 TATTAGCGGTG-TTTCTAAAAAACGCCACTAAAGGTTGAG
1 TATTAGCGGCGTTTTCTAAAAAACGCCACTAAAGGTTGAC
* * * *
85772004 TATTAGCGGCGTTTTTTAACAAACGCCGCTATAGGTTGAC
1 TATTAGCGGCGTTTTCTAAAAAACGCCACTAAAGGTTGAC
*
85772044 CATTAGCGGCG-TTTCTAAAAA
1 TATTAGCGGCGTTTTCTAAAAA
85772065 TGCCGCAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 18 0.35
40 33 0.65
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (40 bp):
TATTAGCGGCGTTTTCTAAAAAACGCCACTAAAGGTTGAC
Found at i:85772240 original size:28 final size:29
Alignment explanation
Indices: 85772195--85772249 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
85772185 CAAAAAGTAT
*
85772195 TTTATCTATATATTTATT-ATTTAAATGG
1 TTTATCTATATATTTATTGATTAAAATGG
*
85772223 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATCTATATATT-TATTGATTAAAAT
85772250 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (29 bp):
TTTATCTATATATTTATTGATTAAAATGG
Found at i:85772741 original size:29 final size:28
Alignment explanation
Indices: 85772709--85772767 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
85772699 ATGGGAGAGG
* * *
85772709 GGTTTATGGTTTTTGAGTTAATGTTTTAA
1 GGTTTAGGGATTTTG-GTTAATGGTTTAA
*
85772738 GGTTTAGGGATTTTGGTTTATGGTTTAA
1 GGTTTAGGGATTTTGGTTAATGGTTTAA
85772766 GG
1 GG
85772768 GTTGGGGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.51
Consensus pattern (28 bp):
GGTTTAGGGATTTTGGTTAATGGTTTAA
Found at i:85772770 original size:29 final size:30
Alignment explanation
Indices: 85772708--85772770 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
85772698 CATGGGAGAG
* * *
85772708 GGGTTTATGGTTTTTGAGTTAATGTTTTAA
1 GGGTTTAGGGATTTTGAGTTAATGGTTTAA
*
85772738 -GGTTTAGGGATTTTG-GTTTATGGTTTAA
1 GGGTTTAGGGATTTTGAGTTAATGGTTTAA
85772766 GGGTT
1 GGGTT
85772771 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (30 bp):
GGGTTTAGGGATTTTGAGTTAATGGTTTAA
Found at i:85772790 original size:21 final size:21
Alignment explanation
Indices: 85772733--85772791 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
85772723 GAGTTAATGT
* **
85772733 TTTAAGGTTTAGGGATTTTGG
1 TTTAAGGTTTAGGGGTTGGGG
* *
85772754 TTTATGGTTTAAGGGTTGGGG
1 TTTAAGGTTTAGGGGTTGGGG
85772775 TTTAAGGTTTAGGGGTT
1 TTTAAGGTTTAGGGGTT
85772792 AATGGTTAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (21 bp):
TTTAAGGTTTAGGGGTTGGGG
Found at i:85772821 original size:15 final size:14
Alignment explanation
Indices: 85772709--85772839 Score: 66
Period size: 14 Copynumber: 8.9 Consensus size: 14
85772699 ATGGGAGAGG
**
85772709 GGTTTATGGTTTTT
1 GGTTTATGGTTTAA
* *
85772723 GAGTTAATGTTTTAA
1 G-GTTTATGGTTTAA
* *
85772738 GGTTTAGGGATTT-T
1 GGTTTATGG-TTTAA
85772752 GGTTTATGGTTTAA
1 GGTTTATGGTTTAA
* **
85772766 GGGTTGGGGTTTAA
1 GGTTTATGGTTTAA
* *
85772780 GGTTTAGGGGTTAA
1 GGTTTATGGTTTAA
85772794 TGGTTAATCATGGTTTAA
1 -GGTT--T-ATGGTTTAA
*
85772812 GGTTTCATGGTTTAGG
1 GGTTT-ATGGTTTA-A
*
85772828 GGTTTATAGTTT
1 GGTTTATGGTTT
85772840 GGGGTTTAAA
Statistics
Matches: 89, Mismatches: 20, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
13 3 0.03
14 36 0.40
15 33 0.37
16 5 0.06
17 5 0.06
18 7 0.08
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.47
Consensus pattern (14 bp):
GGTTTATGGTTTAA
Found at i:85773150 original size:26 final size:27
Alignment explanation
Indices: 85773084--85773151 Score: 113
Period size: 26 Copynumber: 2.6 Consensus size: 27
85773074 TCAAAATTTA
85773084 AAGATTTCAAA-TTTAGAATAATTTTC
1 AAGATTTCAAATTTTAGAATAATTTTC
85773110 AAGATTTCAAATTTTA-AATAATTTTC
1 AAGATTTCAAATTTTAGAATAATTTTC
*
85773136 AATATTTCAAATTTTA
1 AAGATTTCAAATTTTA
85773152 TCTAACTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 36 0.90
27 4 0.10
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (27 bp):
AAGATTTCAAATTTTAGAATAATTTTC
Found at i:85773296 original size:18 final size:17
Alignment explanation
Indices: 85773265--85773299 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
85773255 TAGTTGATTG
*
85773265 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
85773282 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
85773300 AATAAATCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:85775321 original size:73 final size:72
Alignment explanation
Indices: 85775205--85775342 Score: 186
Period size: 73 Copynumber: 1.9 Consensus size: 72
85775195 CCATGTTAAC
* ** * * *
85775205 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCCAATCCGCACACATAGTGCCA
1 CCGCACACATAGTGCCATAAAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCA
85775270 TACAAAT
66 TACAAAT
* * *
85775277 CCGCACACATAAGTGCCATAAAAATTCGCACACATAGTGCCATTCAAATTCGCACACATAGTGCC
1 CCGCACACAT-AGTGCCATAAAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCC
85775342 A
65 A
85775343 AAATCATTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
72 10 0.18
73 46 0.82
ACGTcount: A:0.36, C:0.30, G:0.12, T:0.22
Consensus pattern (72 bp):
CCGCACACATAGTGCCATAAAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCA
TACAAAT
Found at i:85775340 original size:24 final size:24
Alignment explanation
Indices: 85775206--85775342 Score: 143
Period size: 24 Copynumber: 5.7 Consensus size: 24
85775196 CATGTTAACC
85775206 CGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATT
* * * * * *
85775230 CACATACATATTGACATTCCAATC
1 CGCACACATAGTGCCATTCAAATT
* *
85775254 CGCACACATAGTGCCATACAAATC
1 CGCACACATAGTGCCATTCAAATT
**
85775278 CGCACACATAAGTGCCATAAAAATT
1 CGCACACAT-AGTGCCATTCAAATT
85775303 CGCACACATAGTGCCATTCAAATT
1 CGCACACATAGTGCCATTCAAATT
85775327 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
85775343 AAATCATTTC
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
24 70 0.74
25 24 0.26
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.23
Consensus pattern (24 bp):
CGCACACATAGTGCCATTCAAATT
Found at i:85776518 original size:17 final size:17
Alignment explanation
Indices: 85776496--85776528 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
85776486 CCCCACTTAA
*
85776496 TATATTATAACTTATTT
1 TATATTATAACATATTT
85776513 TATATTATAACATATT
1 TATATTATAACATATT
85776529 ACAATTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:85782832 original size:24 final size:24
Alignment explanation
Indices: 85782820--85782909 Score: 139
Period size: 24 Copynumber: 3.8 Consensus size: 24
85782810 TTGACATTCC
85782820 AATCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
85782844 AATCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* *
85782868 AATTCGCACACATAGTGCCATTCA
1 AATCCGCACACATAGTGCCATACA
*
85782892 AATTCG--CACATAGTGCCA
1 AATCCGCACACATAGTGCCA
85782910 AAATCATTTC
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
22 12 0.19
24 52 0.81
ACGTcount: A:0.36, C:0.31, G:0.13, T:0.20
Consensus pattern (24 bp):
AATCCGCACACATAGTGCCATACA
Found at i:85782857 original size:48 final size:48
Alignment explanation
Indices: 85782775--85782901 Score: 146
Period size: 48 Copynumber: 2.6 Consensus size: 48
85782765 CCATGTTAAC
* ** * * * * *
85782775 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCCAAT
1 CCGCACACATAGTGCCATACAAATTCGCACACATAGTGACATACAAAT
* *
85782823 CCGCACACATAGTGCCATACAAATCCGCACACATAGTGCCATACAAAT
1 CCGCACACATAGTGCCATACAAATTCGCACACATAGTGACATACAAAT
* *
85782871 TCGCACACATAGTGCCATTCAAATTCGCACA
1 CCGCACACATAGTGCCATACAAATTCGCACA
85782902 TAGTGCCAAA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.35, C:0.31, G:0.12, T:0.23
Consensus pattern (48 bp):
CCGCACACATAGTGCCATACAAATTCGCACACATAGTGACATACAAAT
Found at i:85782881 original size:72 final size:70
Alignment explanation
Indices: 85782775--85782909 Score: 171
Period size: 72 Copynumber: 1.9 Consensus size: 70
85782765 CCATGTTAAC
* ** * * *
85782775 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCCAATCCGCACACATAGTGCCA
1 CCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCG--CACATAGTGCCA
85782840 TACAAAT
64 TACAAAT
* * *
85782847 CCGCACACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAATTCGCACATAGTGCCA
1 CCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACATAGTGCCA
85782910 AAATCATTTC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
70 12 0.22
72 42 0.78
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (70 bp):
CCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACATAGTGCCATA
CAAAT
Found at i:85784105 original size:17 final size:17
Alignment explanation
Indices: 85784083--85784116 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
85784073 CCCCACTTAA
*
85784083 TATATTATAACTTATTT
1 TATATTATAACATATTT
85784100 TATATTATAACATATTT
1 TATATTATAACATATTT
85784117 CAATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:85787328 original size:64 final size:64
Alignment explanation
Indices: 85787227--85787419 Score: 343
Period size: 64 Copynumber: 3.0 Consensus size: 64
85787217 TTTTTGTAAC
85787227 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
1 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
*
85787291 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATACAAATAT
1 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
* * *
85787355 TTTTATCACGATTTTTAATATATTTATTTATTAATATAATATGT-CCATCTAATATACAAATAT
1 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
85787418 TT
1 TT
85787420 AATAAAATAT
Statistics
Matches: 124, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
63 20 0.16
64 104 0.84
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.48
Consensus pattern (64 bp):
TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
Found at i:85787536 original size:24 final size:24
Alignment explanation
Indices: 85787467--85787537 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
85787457 GTTATTATTG
* *
85787467 AAATATTCTCGTCCGTTTTATAAC
1 AAATATTATCGTCCGTTTTATCAC
*
85787491 AAATATTATTGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
85787515 AAATATTATCGTTCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
85787538 TTTAAGTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.30, C:0.17, G:0.08, T:0.45
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:85787920 original size:9 final size:9
Alignment explanation
Indices: 85787888--85788181 Score: 223
Period size: 9 Copynumber: 33.4 Consensus size: 9
85787878 CATAATTTAC
85787888 ATAACTTA-
1 ATAACTTAT
* *
85787896 ATAAACGTAC
1 AT-AACTTAT
85787906 ATAACTTAT
1 ATAACTTAT
*
85787915 ATAACTTAG
1 ATAACTTAT
*
85787924 ATAA-ATAT
1 ATAACTTAT
85787932 ATAACTTAT
1 ATAACTTAT
*
85787941 ATAACTTAC
1 ATAACTTAT
**
85787950 ATGGCTTAT
1 ATAACTTAT
* *
85787959 ATAACATAC
1 ATAACTTAT
85787968 ATAACTTAT
1 ATAACTTAT
85787977 ATAACTTAT
1 ATAACTTAT
*
85787986 ATAACTTAG
1 ATAACTTAT
85787995 ATAA-TTAT
1 ATAACTTAT
*
85788003 ATAACTTAC
1 ATAACTTAT
85788012 ATAACTTAT
1 ATAACTTAT
*
85788021 ATAACTTAC
1 ATAACTTAT
85788030 AT-A-TATAT
1 ATAACT-TAT
*
85788038 ATAACTTAC
1 ATAACTTAT
*
85788047 ATAA-ATAT
1 ATAACTTAT
* *
85788055 ATATCATAT
1 ATAACTTAT
*
85788064 CATAACTTAC
1 -ATAACTTAT
*
85788074 ATAACTTAC
1 ATAACTTAT
85788083 AT-A--TAT
1 ATAACTTAT
85788089 ATAACTTAT
1 ATAACTTAT
*
85788098 ATAACTTAC
1 ATAACTTAT
85788107 ATAACTTAT
1 ATAACTTAT
*
85788116 ATAACTTAG
1 ATAACTTAT
*
85788125 ATAA-ATAT
1 ATAACTTAT
* *
85788133 ATAATTTAC
1 ATAACTTAT
*
85788142 ATAA-ATAT
1 ATAACTTAT
* *
85788150 ATATCATAT
1 ATAACTTAT
*
85788159 CATAACTTAA
1 -ATAACTTAT
*
85788169 ATAACTTAC
1 ATAACTTAT
85788178 ATAA
1 ATAA
85788182 TACTTAAATA
Statistics
Matches: 226, Mismatches: 45, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
6 4 0.02
7 2 0.01
8 37 0.16
9 168 0.74
10 15 0.07
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:85787969 original size:62 final size:63
Alignment explanation
Indices: 85787879--85788128 Score: 275
Period size: 62 Copynumber: 4.1 Consensus size: 63
85787869 ATTTGATATC
* * *
85787879 ATAATTTACATAACTTA-ATAAACGTACATAACTTATATAACTTAGATAA-ATATATAACTTAT
1 ATAACTTACATAACTTATAT-AACATACATAACTTATATAACTTACATAACATATATAACTTAT
** * * *
85787941 ATAACTTACATGGCTTATATAACATACATAACTTATATAACTTATATAACTTAGATAA-TTAT
1 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTACATAACATATATAACTTAT
* * *
85788003 ATAACTTACATAACTTATATAACTTACAT-A-TATATATAACTTACATAA-ATATATATCATAT
1 ATAACTTACATAACTTATATAACATACATAACT-TATATAACTTACATAACATATATAACTTAT
* * * *
85788064 CATAACTTACATAACTTACAT---ATATATAACTTATATAACTTACATAACTTATATAACTTAG
1 -ATAACTTACATAACTTATATAACATACATAACTTATATAACTTACATAACATATATAACTTAT
85788125 ATAA
1 ATAA
85788129 ATATATAATT
Statistics
Matches: 158, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
59 4 0.03
60 27 0.17
61 29 0.18
62 90 0.57
63 8 0.05
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.38
Consensus pattern (63 bp):
ATAACTTACATAACTTATATAACATACATAACTTATATAACTTACATAACATATATAACTTAT
Found at i:85788216 original size:95 final size:96
Alignment explanation
Indices: 85787906--85788196 Score: 340
Period size: 95 Copynumber: 3.0 Consensus size: 96
85787896 ATAAACGTAC
* * * * * *** *
85787906 ATAACTTATATAACTTAGATAA-ATATATAACTTATATAACTTACATGGCTTATATAACATA-CA
1 ATAACTTACATAACTTATATAACTTACATAA-ATATATAACTTACAT-AAATATATATCATATCA
* * *
85787969 TAACTTATATAACTTATATA-ACTTAGATAATTAT
64 TAACTTAAATAACTTACATATACTTAAAT-A-TAT
*
85788003 ATAACTTACATAACTTATATAACTTACATATATATATAACTTACATAAATATATATCATATCATA
1 ATAACTTACATAACTTATATAACTTACATAAATATATAACTTACATAAATATATATCATATCATA
* *
85788068 ACTTACATAACTTACATATA-TATAACT-TAT
66 ACTTAAATAACTTACATATACT-TAAATATAT
* *
85788098 ATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATA
1 ATAACTTACATAACTTATATAACTTACATAAATATATAACTTACATAAATATATATCATATCATA
85788163 ACTTAAATAACTTACATAATACTTAAATATAT
66 ACTTAAATAACTTACAT-ATACTTAAATATAT
85788195 AT
1 AT
85788197 CATTCATATC
Statistics
Matches: 168, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
95 81 0.48
96 17 0.10
97 61 0.36
98 9 0.05
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (96 bp):
ATAACTTACATAACTTATATAACTTACATAAATATATAACTTACATAAATATATATCATATCATA
ACTTAAATAACTTACATATACTTAAATATAT
Found at i:85790067 original size:12 final size:12
Alignment explanation
Indices: 85790050--85790074 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85790040 AAGATCGAGG
85790050 GATGAATCTGAT
1 GATGAATCTGAT
85790062 GATGAATCTGAT
1 GATGAATCTGAT
85790074 G
1 G
85790075 GAGAGGATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:85793402 original size:13 final size:14
Alignment explanation
Indices: 85793386--85793414 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
85793376 TTCTAAATAT
85793386 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
85793399 TTATAATTGTTTAA
1 TTATAATTGTTTAA
85793413 TT
1 TT
85793415 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:85793915 original size:21 final size:21
Alignment explanation
Indices: 85793829--85793904 Score: 91
Period size: 21 Copynumber: 3.6 Consensus size: 21
85793819 ACTTAGAATG
* * *
85793829 GAGGCAACAGAGAGGAAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
85793850 GCGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
85793871 GAGGCA-CGAACGAGGGAGGCA
1 GAGGCAGC-AGCGAGGGAGGCA
85793892 GAGGCAGCAGCGA
1 GAGGCAGCAGCGA
85793905 TGGCAGCAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
20 1 0.02
21 44 0.96
22 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.47, T:0.00
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:85794344 original size:43 final size:42
Alignment explanation
Indices: 85794288--85794433 Score: 168
Period size: 43 Copynumber: 3.4 Consensus size: 42
85794278 CGTTTGTGGG
* * ** * *
85794288 AAAAGCGCAGCTAAAAGTAATGGCTTTTAGCGGCATTTGCCA
1 AAAAACGCCGCTAAAAGCCATGACTTTTAGCGGCATTTCCCA
85794330 AAAAACCGCCGCTAAAAGCCATGACTTTTAGCGGCACTTTCCCA
1 AAAAA-CGCCGCTAAAAGCCATGACTTTTAGCGGCA-TTTCCCA
* *
85794374 ACAAACGCCGCTAAAAGCCATGACTTTTAGTTGTGC-TTTCCCA
1 AAAAACGCCGCTAAAAGCCATGACTTTTAG-CG-GCATTTCCCA
*
85794417 ACAAACGCCGCTAAAAG
1 AAAAACGCCGCTAAAAG
85794434 TCTATTTTCT
Statistics
Matches: 92, Mismatches: 8, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
42 4 0.04
43 75 0.82
44 11 0.12
45 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
AAAAACGCCGCTAAAAGCCATGACTTTTAGCGGCATTTCCCA
Found at i:85798459 original size:112 final size:112
Alignment explanation
Indices: 85798262--85798480 Score: 368
Period size: 112 Copynumber: 2.0 Consensus size: 112
85798252 CTAAGGATAC
* * * *
85798262 TGATGCACTCACTCTTGATGAAATTCAGAGCTCATTTTTGGTCCATGAGCAGAATATTAACAGAA
1 TGATGAACTCACTCTTGATGAAATTCAGAGCTCATTGTTGGTCCATGAGCAGAAGATGAACAGAA
*
85798327 CTTCTACCTCAATAGAGCAGGCTTTGAAAGTTTCAACTCATTACTCT
66 CTTCTACCTCAATAGAGCAGGCTTTGAAAGCTTCAACTCATTACTCT
*
85798374 TGATGAACTCACTCTTGAT-AAACTTCAGAGCTCCTTGTTGGTCCATGAGCAGAAGATGAACAGA
1 TGATGAACTCACTCTTGATGAAA-TTCAGAGCTCATTGTTGGTCCATGAGCAGAAGATGAACAGA
85798438 ACTTCTACCTCAATAGAGCAGGCTTTGAAAGCTTCAACTCATT
65 ACTTCTACCTCAATAGAGCAGGCTTTGAAAGCTTCAACTCATT
85798481 CTTTCAGAGG
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
111 3 0.03
112 97 0.97
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (112 bp):
TGATGAACTCACTCTTGATGAAATTCAGAGCTCATTGTTGGTCCATGAGCAGAAGATGAACAGAA
CTTCTACCTCAATAGAGCAGGCTTTGAAAGCTTCAACTCATTACTCT
Found at i:85801139 original size:20 final size:19
Alignment explanation
Indices: 85801103--85801144 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
85801093 AATATATGTA
85801103 TTATATTTTATATTATTTAC
1 TTATATTTTATATTA-TTAC
85801123 TTATATTTTAT-TATATTAC
1 TTATATTTTATAT-TATTAC
85801142 TTA
1 TTA
85801145 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATTTTATATTATTAC
Found at i:85801159 original size:23 final size:18
Alignment explanation
Indices: 85801103--85801144 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
85801093 AATATATGTA
85801103 TTATATTTTATATTATTTAC
1 TTATA-TTT-TATTATTTAC
85801123 TTATATTTTATTATATTAC
1 TTATATTTTATTAT-TTAC
85801142 TTA
1 TTA
85801145 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTATTATTTAC
Found at i:85801313 original size:16 final size:17
Alignment explanation
Indices: 85801274--85801315 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
85801264 TTATTATTAT
85801274 TTATTATATATTTTTAAA
1 TTATTAT-TATTTTTAAA
* *
85801292 TAATTATTA-TTTTACA
1 TTATTATTATTTTTAAA
85801308 TTATTATT
1 TTATTATT
85801316 TATATATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 13 0.62
17 2 0.10
18 6 0.29
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATTATTATTTTTAAA
Found at i:85801339 original size:19 final size:19
Alignment explanation
Indices: 85801253--85801361 Score: 68
Period size: 19 Copynumber: 5.7 Consensus size: 19
85801243 TTAACCATAT
85801253 ATTATTTCATAT-TATTATTA
1 ATTATTT-ATATAT-TTATTA
*
85801273 TTTA-TTATATATTT-TTA
1 ATTATTTATATATTTATTA
* *
85801290 AATAATTAT-TATTTTACATT-
1 ATTATTTATATA-TTT--ATTA
85801310 ATTATTTATATATTT-TTA
1 ATTATTTATATATTTATTA
* * *
85801328 CTTGTGTTATATCTTTATTA
1 ATTAT-TTATATATTTATTA
85801348 ATTATTTATATATT
1 ATTATTTATATATT
85801362 ATACATTATT
Statistics
Matches: 68, Mismatches: 11, Indels: 21
0.68 0.11 0.21
Matches are distributed among these distances:
17 9 0.13
18 16 0.24
19 20 0.29
20 19 0.28
21 4 0.06
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTATTTATATATTTATTA
Found at i:85803859 original size:27 final size:28
Alignment explanation
Indices: 85803775--85803872 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
85803765 CATGAGATTG
* * * *
85803775 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
85803804 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
85803832 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
85803859 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
85803873 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:85803883 original size:27 final size:27
Alignment explanation
Indices: 85803803--85803885 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
85803793 TAAATTGTAC
* *
85803803 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
85803831 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
85803858 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
85803885 A
1 A
85803886 TTTTTTTGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:85803886 original size:29 final size:27
Alignment explanation
Indices: 85803775--85803886 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
85803765 CATGAGATTG
** * *
85803775 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
85803804 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
85803832 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
85803859 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
85803887 TTTTTTGAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:85808718 original size:14 final size:16
Alignment explanation
Indices: 85808699--85808735 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
85808689 TCGATGGCTT
85808699 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
85808713 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
85808729 TTT-CATC
1 TTTGCATC
85808736 GCATCGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:85808735 original size:15 final size:15
Alignment explanation
Indices: 85808699--85808748 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
85808689 TCGATGGCTT
85808699 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
85808713 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
* *
85808729 TTT-CATCGCAT-CG
1 TTTGCATCTCATGCA
85808742 TTTGCAT
1 TTTGCAT
85808749 TCAAAGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 10 0.32
15 11 0.35
16 6 0.19
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:85815670 original size:137 final size:137
Alignment explanation
Indices: 85815434--85815708 Score: 487
Period size: 137 Copynumber: 2.0 Consensus size: 137
85815424 CTATTCAGGT
85815434 AACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTCAG
1 AACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTCAG
* * *
85815499 ATAACAGTATGGCCCATAGGCCCATTTTAAAATACATGCAACATCAATAAATATATGCAAGCCCA
66 ATAACAGTATGGCCCATAGGCCCACTTCAAAATACATGCAACATCAATAAACATATGCAAGCCCA
85815564 TTTGGGG
131 TTTGGGG
* *
85815571 AACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAG
1 AACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTCAG
* *
85815636 ATAACAGTATGGCCCATAGGCCCACTTCATAATACATGCAACATCAGTAAACATATGCAAGCCCA
66 ATAACAGTATGGCCCATAGGCCCACTTCAAAATACATGCAACATCAATAAACATATGCAAGCCCA
85815701 TTTGGGG
131 TTTGGGG
85815708 A
1 A
85815709 GACTACTCAA
Statistics
Matches: 131, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 131 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTCAG
ATAACAGTATGGCCCATAGGCCCACTTCAAAATACATGCAACATCAATAAACATATGCAAGCCCA
TTTGGGG
Found at i:85817528 original size:26 final size:25
Alignment explanation
Indices: 85817492--85817575 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 25
85817482 CATGAAATTC
85817492 TTATCATGAAACATTTACCTAACGCA
1 TTATCATGAAACATTTACCTAAC-CA
85817518 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
*
85817544 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
85817570 TTATCA
1 TTATCA
85817576 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 52 0.95
27 1 0.02
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:85820335 original size:204 final size:205
Alignment explanation
Indices: 85819926--85820478 Score: 824
Period size: 204 Copynumber: 2.7 Consensus size: 205
85819916 CAGATCTGGC
*
85819926 CTGAAGCAAGATCCAAGATGGTTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
85819991 -ATTTGGCTTTCACGTGTTTACGCTGAAACAAATCTAAGATGATTTGGTATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTC-GTATTGTCAG
* * * **
85820055 AGACCAAATCGAAGTCTGGCATCTCTACTTTGGCGGGGAGAAGATACATAGAAGATCTCACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCACTTTGACGAAGAGAAGATACATAGAAGATCTCACCTTC
*
85820120 AGATGATTTCA
195 AGATAATTTCA
* * *
85820131 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACGTAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
85820196 GATTTGGCTTTCACGTGTTTATGCTGAAGCAAATCTAAAATGATTTGGTATCTC-TATTGTCAGA
66 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTCGTATTGTCAGA
* * * * *
85820260 GAACAAATGGAAGTCTGGCATCTCCACTTTGATGAAGAGCAGATATATAGCAGATCTCACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCACTTTGACGAAGAGAAGATACATAGAAGATCTCACCTTCA
85820325 GATAATTTCA
196 GATAATTTCA
*
85820335 CTGAAGCAAGATCCAAGAT-AGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
1 CTGAAGCAAGATCCAAGATGA-TTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
* ** * * *
85820399 TGATTTGGTTTTTGCGTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
65 TGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTC-GTATTGTCA
*
85820464 GAAAACAAATCGAAG
129 GAGAACAAATCGAAG
85820479 AAGCAGATTT
Statistics
Matches: 313, Mismatches: 31, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
203 1 0.00
204 180 0.58
205 61 0.19
206 71 0.23
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (205 bp):
CTGAAGCAAGATCCAAGATGATTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTCGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCACTTTGACGAAGAGAAGATACATAGAAGATCTCACCTTCA
GATAATTTCA
Found at i:85822150 original size:20 final size:19
Alignment explanation
Indices: 85822114--85822155 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
85822104 AATATATGTA
85822114 TTATATTTTATATTATTTAC
1 TTATATTTTATATTA-TTAC
85822134 TTATATTTTAT-TATATTAC
1 TTATATTTTATAT-TATTAC
85822153 TTA
1 TTA
85822156 AAATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATTTTATATTATTAC
Found at i:85822282 original size:16 final size:15
Alignment explanation
Indices: 85822263--85822331 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 15
85822253 ATTAACCATA
85822263 TATTATTTCATATTAT
1 TATTATTT-ATATTAT
85822279 TATTA-TT-TATTAT
1 TATTATTTATATTAT
*
85822292 ATATT-TTTAAATTAT
1 -TATTATTTATATTAT
*
85822307 TATTATTT-TA-CAT
1 TATTATTTATATTAT
85822320 TATTATTTATAT
1 TATTATTTATAT
85822332 ATTTTTACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
13 16 0.36
14 13 0.30
15 10 0.23
16 5 0.11
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATTTATATTAT
Found at i:85822306 original size:38 final size:38
Alignment explanation
Indices: 85822264--85822372 Score: 91
Period size: 38 Copynumber: 2.9 Consensus size: 38
85822254 TTAACCATAT
*
85822264 ATTATT-TCATATTATTATTATT-TATTATATATTTTTAA
1 ATTATTATCATATTA-CATTATTAT-TTATATATTTTTAA
* * *
85822302 ATTATTATTATTTTACATTATTATTTATATATTTTTAC
1 ATTATTATCATATTACATTATTATTTATATATTTTTAA
* * *
85822340 TTGTATTAT-ATCTT-TATTAATTATTTATATATT
1 AT-TATTATCATATTACATT-ATTATTTATATATT
85822373 ATACATTATT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
37 3 0.05
38 44 0.73
39 13 0.22
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (38 bp):
ATTATTATCATATTACATTATTATTTATATATTTTTAA
Found at i:85822324 original size:57 final size:61
Alignment explanation
Indices: 85822263--85822429 Score: 157
Period size: 57 Copynumber: 2.9 Consensus size: 61
85822253 ATTAACCATA
*
85822263 TATTATTTCATATTATTATTA-TT-TATTATATATTT-TTAAATTA-TTAT-TATTTTACAT
1 TATTATTTCATATTATTATTACTTGTATTATATATTTATT-AATTATTTATATATTATACAT
* *
85822320 TATTATTT-ATA-TATTTTTACTTGTATTATATCTTTATTAATTATTTATATATTATACAT
1 TATTATTTCATATTATTATTACTTGTATTATATATTTATTAATTATTTATATATTATACAT
**
85822379 TATT-TTTACATA-TA-TACTT--TCATATTATATA-TTA-TAATTATTT-TATATTAT
1 TATTATTT-CATATTATTA-TTACTTGTATTATATATTTATTAATTATTTATATATTAT
85822430 GTCATTTTTA
Statistics
Matches: 95, Mismatches: 7, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
55 15 0.16
56 14 0.15
57 27 0.28
58 18 0.19
59 14 0.15
60 7 0.07
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.61
Consensus pattern (61 bp):
TATTATTTCATATTATTATTACTTGTATTATATATTTATTAATTATTTATATATTATACAT
Found at i:85822350 original size:19 final size:18
Alignment explanation
Indices: 85822283--85822372 Score: 69
Period size: 19 Copynumber: 4.8 Consensus size: 18
85822273 TATTATTATT
85822283 ATTTATTATATATTTTTA
1 ATTTATTATATATTTTTA
*
85822301 AATTATTAT-TA-TTTTA
1 ATTTATTATATATTTTTA
85822317 CATTATTATTTATATATTTTTA
1 -A-T-TTA-TTATATATTTTTA
* *
85822339 CTTGTATTATATCTTTATTA
1 ATT-TATTATATATTT-TTA
85822359 A-TTATTTATATATT
1 ATTTA-TTATATATT
85822373 ATACATTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 17
0.71 0.08 0.21
Matches are distributed among these distances:
16 5 0.09
17 3 0.05
18 10 0.18
19 22 0.39
20 10 0.18
21 2 0.04
22 5 0.09
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (18 bp):
ATTTATTATATATTTTTA
Found at i:85825999 original size:17 final size:17
Alignment explanation
Indices: 85825960--85826000 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
85825950 TTTAAATGAG
* *
85825960 GGATTGTTAATAAATTT
1 GGATTGTTAATAAAATC
85825977 GG-TTGTTAATAAAATC
1 GGATTGTTAATAAAATC
85825993 GGATTGTT
1 GGATTGTT
85826001 TTCCTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.32, C:0.02, G:0.22, T:0.44
Consensus pattern (17 bp):
GGATTGTTAATAAAATC
Found at i:85826823 original size:15 final size:15
Alignment explanation
Indices: 85826803--85826835 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
85826793 AAAATAAATA
85826803 TTTTTATTTTTATTT
1 TTTTTATTTTTATTT
85826818 TTTTTATTTTTATTT
1 TTTTTATTTTTATTT
85826833 TTT
1 TTT
85826836 GCTTCAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTATTTTTATTT
Found at i:85827100 original size:21 final size:22
Alignment explanation
Indices: 85827074--85827126 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
85827064 AATTTATATT
85827074 TATTTTAAATATT-TTGTT-AGA
1 TATTTTAAA-ATTATTGTTAAGA
85827095 TATTTTAAAATTATTGTTAAGA
1 TATTTTAAAATTATTGTTAAGA
85827117 -ATTTTTAAAA
1 TA-TTTTAAAA
85827127 ATAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 3 0.10
21 15 0.52
22 11 0.38
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.53
Consensus pattern (22 bp):
TATTTTAAAATTATTGTTAAGA
Found at i:85834280 original size:9 final size:9
Alignment explanation
Indices: 85834266--85834290 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
85834256 TAGGGTTCCA
85834266 TTTCATGAT
1 TTTCATGAT
85834275 TTTCATGAT
1 TTTCATGAT
85834284 TTTCATG
1 TTTCATG
85834291 TAATTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.56
Consensus pattern (9 bp):
TTTCATGAT
Done.