Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 258 of 344
Found at i:85844580 original size:21 final size:22
Alignment explanation
Indices: 85844548--85844591 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
85844538 GAAATAAAAA
* *
85844548 CTTGCAATTTAATCATTCCAAG
1 CTTGCAATTTAAACATTCAAAG
85844570 CTTGC-ATTTAAACATTCAAAG
1 CTTGCAATTTAAACATTCAAAG
85844591 C
1 C
85844592 ATCACTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (22 bp):
CTTGCAATTTAAACATTCAAAG
Found at i:85848658 original size:3 final size:3
Alignment explanation
Indices: 85848650--85848701 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
85848640 CTAATAAATA
* * * * *
85848650 AAT AAT AAT AAT GAT AAT AAA AAT AAT GAT AAT GAT ATT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
85848697 AAT AA
1 AAT AA
85848702 AAAAATCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:85848675 original size:21 final size:21
Alignment explanation
Indices: 85848649--85848701 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
85848639 ACTAATAAAT
85848649 AAATAATAATAATGATAATAA
1 AAATAATAATAATGATAATAA
* *
85848670 AAATAATGATAATGATATTAA
1 AAATAATAATAATGATAATAA
*
85848691 TAAT-ATAATAA
1 AAATAATAATAA
85848702 AAAAATCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (21 bp):
AAATAATAATAATGATAATAA
Found at i:85849009 original size:3 final size:3
Alignment explanation
Indices: 85848997--85849118 Score: 81
Period size: 3 Copynumber: 40.7 Consensus size: 3
85848987 TTAAATTGGT
* * *
85848997 TAA T-A TAA TAA TAA CAA TAA TGTA TAA GTAA -AGA AAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA -TAA TA-A TAA TAA TAA TAA
* * * *
85849042 TAA TAA TAA TAA TAA TAA CAA -AGA TAG TAA TAA AAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* * * *
85849087 AAA TAA AAA TAA AAA TAA TAG TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
85849119 CATTATTAAG
Statistics
Matches: 91, Mismatches: 20, Indels: 16
0.72 0.16 0.13
Matches are distributed among these distances:
2 6 0.07
3 78 0.86
4 7 0.08
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:85849672 original size:2 final size:2
Alignment explanation
Indices: 85849667--85849710 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
85849657 TCTCAAGTTT
85849667 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
85849709 TC
1 TC
85849711 CAATATCCGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:85851636 original size:33 final size:33
Alignment explanation
Indices: 85851564--85851638 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 33
85851554 AAACAACAAC
* * * * *
85851564 AACAAAATAGTAGCAATATAATAATGAAATGGT
1 AACAAAATAGTAGAAAAAAAACAATGAAATAGT
*
85851597 AGCAAAATAGTAGAAAAAAAACAA-GAAAATAGT
1 AACAAAATAGTAGAAAAAAAACAATG-AAATAGT
85851630 AACAAAATA
1 AACAAAATA
85851639 ATAATAATAA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
32 1 0.03
33 33 0.97
ACGTcount: A:0.63, C:0.07, G:0.13, T:0.17
Consensus pattern (33 bp):
AACAAAATAGTAGAAAAAAAACAATGAAATAGT
Found at i:85852433 original size:19 final size:19
Alignment explanation
Indices: 85852363--85852434 Score: 51
Period size: 19 Copynumber: 3.9 Consensus size: 19
85852353 TTTTACGGCC
* *
85852363 TTAATTATTTTTTAAAAAA
1 TTAATTATTATTTAAAAAT
* **
85852382 TTAATTATTAATTT-TATTT
1 TTAATTATT-ATTTAAAAAT
**
85852401 TTAA-TA-TAAATAAAAAT
1 TTAATTATTATTTAAAAAT
85852418 TTAATTATTATTTAAAA
1 TTAATTATTATTTAAAA
85852435 TAATATAGTT
Statistics
Matches: 37, Mismatches: 12, Indels: 8
0.65 0.21 0.14
Matches are distributed among these distances:
16 2 0.05
17 7 0.19
18 4 0.11
19 21 0.57
20 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAATTATTATTTAAAAAT
Found at i:85852870 original size:172 final size:172
Alignment explanation
Indices: 85852571--85852909 Score: 563
Period size: 172 Copynumber: 2.0 Consensus size: 172
85852561 TTTTCTTTCT
* * *
85852571 TTCTTTTTTTTTTTTTGAATAAAAGACCAAGTTGTATTAAAAGAAAAAACAAAACAAAAGTTTTG
1 TTCTTTTATTTTCTTTGAATAAAAGACCAAGTTGTATTAAAAGAAAAAACAAAACAAAAGTTCTG
* * *
85852636 GCCCAACCCCAATAAGCCCGAAAACCAGCAATGAAACATAAAACCAAGACAACAACTAAAAAATA
66 GCCCAACCCCAATAAGCCCAAAAACCACCAATGAAACATAAAACCAAGAAAACAACTAAAAAATA
*
85852701 AATTGCCCAGCCTAGCCCAACCAAACAGAAAAAGTATCTTAG
131 AATTACCCAGCCTAGCCCAACCAAACAGAAAAAGTATCTTAG
*
85852743 TTCTTTTATTTTCTTTGAATAAAAGACCAGGTTGTATTAAAAGAAAAAACAAAACAAAAGTTCTG
1 TTCTTTTATTTTCTTTGAATAAAAGACCAAGTTGTATTAAAAGAAAAAACAAAACAAAAGTTCTG
* *
85852808 G-CCAACCCCAATGAGCCCAAAAACCACCAATGAAACATAAAACCAAGAAAAACAATTAAAAAAT
66 GCCCAACCCCAATAAGCCCAAAAACCACCAATGAAACATAAAACCAAG-AAAACAACTAAAAAAT
*
85852872 AAATTACCCAGCCTAGCCCAACCAAACAGAAAATGTAT
130 AAATTACCCAGCCTAGCCCAACCAAACAGAAAAAGTAT
85852910 ACCCATCTTT
Statistics
Matches: 155, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
171 43 0.28
172 112 0.72
ACGTcount: A:0.47, C:0.21, G:0.11, T:0.21
Consensus pattern (172 bp):
TTCTTTTATTTTCTTTGAATAAAAGACCAAGTTGTATTAAAAGAAAAAACAAAACAAAAGTTCTG
GCCCAACCCCAATAAGCCCAAAAACCACCAATGAAACATAAAACCAAGAAAACAACTAAAAAATA
AATTACCCAGCCTAGCCCAACCAAACAGAAAAAGTATCTTAG
Found at i:85859552 original size:85 final size:84
Alignment explanation
Indices: 85859415--85859570 Score: 192
Period size: 85 Copynumber: 1.8 Consensus size: 84
85859405 GTCTGAGACA
* * * * *
85859415 TCGTGTAAGACCGTGTCTGGGACACAGGCATCGATTGAGATTTATGTATAAGACTATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTCATG-ATAAGACCACGTCCGGGA
85859480 CATCGGCATCGTATCTGATT
65 CATCGGCATCGTATCTGATT
*
85859500 TCGTGTAAGACCCTG-CTTGGGACAGAGGCATCGATATTGA-ATTACATG-TAAGACCACGTCCG
1 TCGTGTAAGACCCTGTC-TGGGACACAGGCATCG--ATTGAGATT-CATGATAAGACCACGTCCG
85859562 GGACATCGG
62 GGACATCGG
85859571 TATTGTACTT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
84 1 0.02
85 49 0.80
86 3 0.05
87 8 0.13
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (84 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTCATGATAAGACCACGTCCGGGAC
ATCGGCATCGTATCTGATT
Found at i:85869243 original size:28 final size:28
Alignment explanation
Indices: 85869195--85869280 Score: 93
Period size: 28 Copynumber: 3.1 Consensus size: 28
85869185 GGTAATGCAA
* *
85869195 AAATCTAACCGTTATAATAT-GATCGTTG
1 AAATCTGACCGTTACAATATGGA-CGTTG
* *
85869223 GAATCTGACCGTTACATTATGGACGTTG
1 AAATCTGACCGTTACAATATGGACGTTG
* * *
85869251 AAATTTGACCATTGCAATATGGACGTTG
1 AAATCTGACCGTTACAATATGGACGTTG
85869279 AA
1 AA
85869281 TTTTTGGGAT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
28 46 0.96
29 2 0.04
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (28 bp):
AAATCTGACCGTTACAATATGGACGTTG
Found at i:85874913 original size:30 final size:30
Alignment explanation
Indices: 85874879--85874939 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
85874869 TTATTTTATC
85874879 GTTAATTTTCTTATTATTTTA-AAGGCATTT
1 GTTAATTTTCTTATTATTTTAGAA-GCATTT
*
85874909 GTTAATTTTTTTATTATTTTAGAAGCATTT
1 GTTAATTTTCTTATTATTTTAGAAGCATTT
85874939 G
1 G
85874940 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 27 0.93
31 2 0.07
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.57
Consensus pattern (30 bp):
GTTAATTTTCTTATTATTTTAGAAGCATTT
Found at i:85876389 original size:35 final size:36
Alignment explanation
Indices: 85876330--85876404 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 36
85876320 GGAGCCACTA
* *
85876330 GTGTGTTTCAGATGGATTAGCTCTTATAAGCAT-TG
1 GTGTGTTTCAGATGGACTAACTCTTATAAGCATCTG
* * * *
85876365 GTGTGTTTCGGATTGACTAACTCTTGTGAGCATCTG
1 GTGTGTTTCAGATGGACTAACTCTTATAAGCATCTG
85876401 GTGT
1 GTGT
85876405 ATTTTGGTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
35 27 0.82
36 6 0.18
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (36 bp):
GTGTGTTTCAGATGGACTAACTCTTATAAGCATCTG
Found at i:85878737 original size:40 final size:40
Alignment explanation
Indices: 85878682--85878774 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
85878672 TTCAGTGACA
* *** * *
85878682 TTAGCGGCACTTTTTAAAAAATGGCGCTAATGCTCTATCT
1 TTAGCGGCGCTTTTTAAAAAACACCGCTAACGCTCGATCT
*
85878722 TTAGCGGCGCTTTTTAACAAACACCGCTAACGCTCGATCT
1 TTAGCGGCGCTTTTTAAAAAACACCGCTAACGCTCGATCT
*
85878762 TTAGCAGCGCTTT
1 TTAGCGGCGCTTT
85878775 GAGAAAATGC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTAAAAAACACCGCTAACGCTCGATCT
Found at i:85879223 original size:22 final size:22
Alignment explanation
Indices: 85879164--85879243 Score: 65
Period size: 22 Copynumber: 3.7 Consensus size: 22
85879154 ATTTAGGGCA
85879164 TATGG-TTAAGGGTTTAAGGTT
1 TATGGATTAAGGGTTTAAGGTT
****
85879185 TAT-GAGTTACTATTTTAAGGTT
1 TATGGA-TTAAGGGTTTAAGGTT
* * *
85879207 TATGGATTATGGGTTTAGGGAT
1 TATGGATTAAGGGTTTAAGGTT
*
85879229 TATGGTTTAAGGGTT
1 TATGGATTAAGGGTT
85879244 GGGGATTAAG
Statistics
Matches: 44, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
20 1 0.02
21 3 0.07
22 38 0.86
23 2 0.05
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (22 bp):
TATGGATTAAGGGTTTAAGGTT
Found at i:85879241 original size:15 final size:15
Alignment explanation
Indices: 85879203--85879237 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
85879193 ACTATTTTAA
*
85879203 GGTTTATGGATTATG
1 GGTTTAGGGATTATG
85879218 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
85879232 GGTTTA
1 GGTTTA
85879238 AGGGTTGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:85879252 original size:14 final size:14
Alignment explanation
Indices: 85879235--85879300 Score: 75
Period size: 14 Copynumber: 4.7 Consensus size: 14
85879225 GGATTATGGT
85879235 TTAAGGGTT-GGGG
1 TTAAGGGTTAGGGG
*
85879248 ATTAAGGTTTAGGGG
1 -TTAAGGGTTAGGGG
85879263 TT-AGAGGTTAGGGG
1 TTAAG-GGTTAGGGG
85879277 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
85879291 TCT-AGGGTTA
1 T-TAAGGGTTA
85879301 AGTGTTTATG
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
13 2 0.04
14 37 0.80
15 7 0.15
ACGTcount: A:0.21, C:0.02, G:0.45, T:0.32
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:85879271 original size:7 final size:7
Alignment explanation
Indices: 85879256--85879297 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
85879246 GGATTAAGGT
85879256 TTAGGGG
1 TTAGGGG
*
85879263 TTAGAGG
1 TTAGGGG
85879270 TTAGGGG
1 TTAGGGG
*
85879277 TTAAGGG
1 TTAGGGG
85879284 TTAGGGG
1 TTAGGGG
85879291 TCTAGGG
1 T-TAGGG
85879298 TTAAGTGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
7 25 0.83
8 5 0.17
ACGTcount: A:0.19, C:0.02, G:0.50, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:85879271 original size:28 final size:28
Alignment explanation
Indices: 85879238--85879300 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 28
85879228 TTATGGTTTA
*
85879238 AGGGTT-GGGGATTAAGGTTTAGGGGT-T
1 AGGGTTAGGGG-TTAAGGGTTAGGGGTCT
85879265 AGAGGTTAGGGGTTAAGGGTTAGGGGTCT
1 AG-GGTTAGGGGTTAAGGGTTAGGGGTCT
85879294 AGGGTTA
1 AGGGTTA
85879301 AGTGTTTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 2 0.06
28 23 0.72
29 7 0.22
ACGTcount: A:0.21, C:0.02, G:0.48, T:0.30
Consensus pattern (28 bp):
AGGGTTAGGGGTTAAGGGTTAGGGGTCT
Found at i:85879298 original size:21 final size:20
Alignment explanation
Indices: 85879221--85879302 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 20
85879211 GATTATGGGT
* *
85879221 TTAGGGATTATGGTTTAAGGG
1 TTAGGGGTTA-GGGTTAAGGG
* *
85879242 TT-GGGGATTAAGGTTTAGGGG
1 TTAGGGG-TT-AGGGTTAAGGG
*
85879263 TTAGAGGTTAGGGGTTAAGGG
1 TTAGGGGTTA-GGGTTAAGGG
85879284 TTAGGGGTCTAGGGTTAAG
1 TTAGGGGT-TAGGGTTAAG
85879303 TGTTTATGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
20 4 0.08
21 40 0.80
22 6 0.12
ACGTcount: A:0.22, C:0.01, G:0.44, T:0.33
Consensus pattern (20 bp):
TTAGGGGTTAGGGTTAAGGG
Found at i:85883416 original size:23 final size:23
Alignment explanation
Indices: 85883384--85883453 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
85883374 GCTACTGTTT
* *
85883384 TTTAAGTGCTGCAAATTGAAGTG
1 TTTAAATGCTGTAAATTGAAGTG
*
85883407 TTTAAATGCTGTAAGTTGAAGTG
1 TTTAAATGCTGTAAATTGAAGTG
* *
85883430 CTTAAATGTTGTAAATTGAAGTG
1 TTTAAATGCTGTAAATTGAAGTG
85883453 T
1 T
85883454 CTGGAAATTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (23 bp):
TTTAAATGCTGTAAATTGAAGTG
Found at i:85883449 original size:46 final size:46
Alignment explanation
Indices: 85883385--85883585 Score: 158
Period size: 46 Copynumber: 4.5 Consensus size: 46
85883375 CTACTGTTTT
* * *
85883385 TTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAGTTGA-AGTGC
1 TTAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAGA-TGC
* *
85883431 TTAAATGTTGTAAATTGAAGTG------T-CTGGAAATTGAGATGC
1 TTAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAGATGC
* * * *
85883470 TT-TATCGCTGT-AATTG-AGTTGTATAAATGTTGTTAATTGAGATG-
1 TTAAAT-GCTGTAAATTGAAG-TGTTTAAATGCTGTAAATTGAGATGC
*
85883514 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGA-AGTGC
1 TTAAA-TGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAGA-TGC
* *
85883561 TTAAATGTTGTAAATTAAAGTGTTT
1 TTAAATGCTGTAAATTGAAGTGTTT
85883586 TAAGTACTAC
Statistics
Matches: 121, Mismatches: 18, Indels: 32
0.71 0.11 0.19
Matches are distributed among these distances:
37 2 0.02
38 9 0.07
39 18 0.15
40 2 0.02
44 3 0.02
45 18 0.15
46 62 0.51
47 7 0.06
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (46 bp):
TTAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAGATGC
Found at i:85883530 original size:23 final size:23
Alignment explanation
Indices: 85883514--85883656 Score: 128
Period size: 23 Copynumber: 6.1 Consensus size: 23
85883504 AATTGAGATG
85883514 TTAAAGTGCTGCAAATTGAAGTGT
1 TTAAA-TGCTGCAAATTGAAGTGT
* *
85883538 TTAAATGCTGTAAATTGAAGTGC
1 TTAAATGCTGCAAATTGAAGTGT
* * *
85883561 TTAAATGTTGTAAATTAAAGTGTT
1 TTAAATGCTGCAAATTGAAGTG-T
* * *
85883585 TTAAGTACTACAAATTGAAGTGT
1 TTAAATGCTGCAAATTGAAGTGT
** *
85883608 TTAGTTGCTGGAAATTG-AGATGT
1 TTAAATGCTGCAAATTGAAG-TGT
*
85883631 TT-TATCGCTGCAAATTGAAGTGT
1 TTAAAT-GCTGCAAATTGAAGTGT
85883654 TTA
1 TTA
85883657 GTTGCTGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
22 3 0.03
23 69 0.73
24 23 0.24
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (23 bp):
TTAAATGCTGCAAATTGAAGTGT
Found at i:85884051 original size:18 final size:18
Alignment explanation
Indices: 85884028--85884074 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
85884018 TGCTGTATTT
85884028 GGACTTGCTGTTAGTAAA
1 GGACTTGCTGTTAGTAAA
85884046 GGACTTGCTGTTAGTAAA
1 GGACTTGCTGTTAGTAAA
*
85884064 AGACTTGCTGT
1 GGACTTGCTGT
85884075 ATTTTATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.34
Consensus pattern (18 bp):
GGACTTGCTGTTAGTAAA
Found at i:85884127 original size:19 final size:19
Alignment explanation
Indices: 85884104--85884150 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
85884094 ATTTAATCTA
*
85884104 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
85884122 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
85884142 ATTTTTATT
1 ATTTTTATT
85884151 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:85885361 original size:19 final size:20
Alignment explanation
Indices: 85885323--85885362 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
85885313 TATAAAAATG
85885323 AATTAAATTGTATCATGATA
1 AATTAAATTGTATCATGATA
* *
85885343 AATTTAATTG-ATTATGATA
1 AATTAAATTGTATCATGATA
85885362 A
1 A
85885363 CACTTATTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (20 bp):
AATTAAATTGTATCATGATA
Found at i:85897938 original size:12 final size:12
Alignment explanation
Indices: 85897921--85897958 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
85897911 GGGCCGGAGA
85897921 TGCTGCTGGGGC
1 TGCTGCTGGGGC
85897933 TGCTGCTGGGGC
1 TGCTGCTGGGGC
*
85897945 TGCTGCTGGAGC
1 TGCTGCTGGGGC
85897957 TG
1 TG
85897959 GAGTTTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.03, C:0.24, G:0.47, T:0.26
Consensus pattern (12 bp):
TGCTGCTGGGGC
Found at i:85901239 original size:8 final size:8
Alignment explanation
Indices: 85901230--85901371 Score: 194
Period size: 8 Copynumber: 17.6 Consensus size: 8
85901220 ATATATATAT
*
85901230 AGATAGAT
1 AGATAGAC
*
85901238 AGATAGAT
1 AGATAGAC
85901246 AGATAGAC
1 AGATAGAC
85901254 AGATAGAC
1 AGATAGAC
85901262 AGATAGAC
1 AGATAGAC
*
85901270 AGAGAGAC
1 AGATAGAC
*
85901278 AGAGAGAC
1 AGATAGAC
*
85901286 AGAGAGAC
1 AGATAGAC
*
85901294 AGACAGAC
1 AGATAGAC
*
85901302 AGACAGAC
1 AGATAGAC
*
85901310 AGACAGAC
1 AGATAGAC
*
85901318 AGACAGAC
1 AGATAGAC
85901326 AGATAAGAC
1 AGAT-AGAC
85901335 AGATAGAC
1 AGATAGAC
85901343 AGATAGAC
1 AGATAGAC
85901351 AGATAGAC
1 AGATAGAC
85901359 AGATAGAC
1 AGATAGAC
85901367 AGATA
1 AGATA
85901372 TAAATACTTT
Statistics
Matches: 129, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
8 121 0.94
9 8 0.06
ACGTcount: A:0.51, C:0.13, G:0.27, T:0.09
Consensus pattern (8 bp):
AGATAGAC
Found at i:85901249 original size:4 final size:4
Alignment explanation
Indices: 85901250--85901369 Score: 141
Period size: 4 Copynumber: 29.8 Consensus size: 4
85901240 ATAGATAGAT
* * * * *
85901250 AGAC AGAT AGAC AGAT AGAC AGAG AGAC AGAG AGAC AGAG AGAC AGAC
1 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
* * *
85901298 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGATA AGAC AGAT AGAC AGAT
1 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGA-C AGAC AGAC AGAC AGAC
* *
85901347 AGAC AGAT AGAC AGAT AGAC AGA
1 AGAC AGAC AGAC AGAC AGAC AGA
85901370 TATAAATACT
Statistics
Matches: 95, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
4 92 0.97
5 3 0.03
ACGTcount: A:0.51, C:0.16, G:0.28, T:0.06
Consensus pattern (4 bp):
AGAC
Found at i:85903925 original size:132 final size:132
Alignment explanation
Indices: 85903688--85903938 Score: 362
Period size: 132 Copynumber: 1.9 Consensus size: 132
85903678 CAAGAAAGTG
* *
85903688 AAAGGATCTCTTCCTGATAACTTCTTTGATAGGGATGAAACCAAGTTACCTACGAATCTTATGAA
1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAATCTCATGAA
* * *
85903753 GCCTCCAAGGGAGAATAAACTGGCAGTGAAGCAGGCTAGTGCTTCAGAAACCAAAACAAAGCACG
66 GCCTCCAAGGGAGAATAAACAGGCAGTCAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
85903818 TT
131 TT
* ** *
85903820 AAAGGATCTCTTCCTGATGACTTCTTTGATAAGGATGATGCCAAGTTACCTATGAATGC-CATGA
1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAAT-CTCATGA
* * *
85903884 AGCCTCCTAGGGAGAATATACAGGC-TTCAGAGCAGGCTAGTGCTCCAGAAACCAA
65 AGCCTCCAAGGGAGAATAAACAGGCAGTCA-AGCAGGCTAGTGCTCCAGAAACCAA
85903939 GCAAGTAAAG
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
131 2 0.02
132 102 0.97
133 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (132 bp):
AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAATCTCATGAA
GCCTCCAAGGGAGAATAAACAGGCAGTCAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
TT
Found at i:85907886 original size:12 final size:12
Alignment explanation
Indices: 85907869--85907909 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
85907859 GGAGATAGGA
85907869 AAAACAGGTTCC
1 AAAACAGGTTCC
*
85907881 AAAACAGG---A
1 AAAACAGGTTCC
85907890 AAAACAGGTTCC
1 AAAACAGGTTCC
85907902 AAAACAGG
1 AAAACAGG
85907910 AATAACAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 8 0.33
12 16 0.67
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10
Consensus pattern (12 bp):
AAAACAGGTTCC
Found at i:85907890 original size:21 final size:21
Alignment explanation
Indices: 85907865--85907917 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
85907855 CAGTGGAGAT
85907865 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
85907886 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
*
85907907 AGGAATAACAG
1 AGGAAAAACAG
85907918 TGGCTGTAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.53, C:0.17, G:0.21, T:0.09
Consensus pattern (21 bp):
AGGAAAAACAGGTTCCAAAAC
Found at i:85911724 original size:22 final size:22
Alignment explanation
Indices: 85911698--85911777 Score: 61
Period size: 22 Copynumber: 3.4 Consensus size: 22
85911688 CTGAATTTTT
85911698 CATTTTAATGGTTTATTGAACC
1 CATTTTAATGGTTTATTGAACC
** * **
85911720 CATTTTAAATTATTTAGCCTGAATTTTT
1 CATTTT-AATGGTTTA--TTGAA---CC
85911748 CATTTTAATGGTTTATTGAACC
1 CATTTTAATGGTTTATTGAACC
85911770 CATTTTAA
1 CATTTTAA
85911778 ATTATTTATT
Statistics
Matches: 42, Mismatches: 10, Indels: 12
0.66 0.16 0.19
Matches are distributed among these distances:
22 14 0.33
23 7 0.17
25 8 0.19
27 7 0.17
28 6 0.14
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (22 bp):
CATTTTAATGGTTTATTGAACC
Found at i:85911746 original size:50 final size:50
Alignment explanation
Indices: 85911676--85911785 Score: 211
Period size: 50 Copynumber: 2.2 Consensus size: 50
85911666 TTAATTTTAA
*
85911676 AAATTAATTAGCCTGAATTTTTCATTTTAATGGTTTATTGAACCCATTTT
1 AAATTATTTAGCCTGAATTTTTCATTTTAATGGTTTATTGAACCCATTTT
85911726 AAATTATTTAGCCTGAATTTTTCATTTTAATGGTTTATTGAACCCATTTT
1 AAATTATTTAGCCTGAATTTTTCATTTTAATGGTTTATTGAACCCATTTT
85911776 AAATTATTTA
1 AAATTATTTA
85911786 TTACATTTAT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (50 bp):
AAATTATTTAGCCTGAATTTTTCATTTTAATGGTTTATTGAACCCATTTT
Found at i:85916218 original size:16 final size:16
Alignment explanation
Indices: 85916199--85916230 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
85916189 TTATTTGTCA
85916199 GTTGTTGTCATAAGCC
1 GTTGTTGTCATAAGCC
85916215 GTTGTTGTCATAAGCC
1 GTTGTTGTCATAAGCC
85916231 TTTACCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (16 bp):
GTTGTTGTCATAAGCC
Found at i:85919852 original size:16 final size:17
Alignment explanation
Indices: 85919833--85919872 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
85919823 CCATCCTTCT
85919833 AATTTTCT-ACCCTTTC
1 AATTTTCTCACCCTTTC
*
85919849 AATTTT-TCATCCTTTC
1 AATTTTCTCACCCTTTC
85919865 AATTTTCT
1 AATTTTCT
85919873 TTCCACTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.20, C:0.25, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTTCTCACCCTTTC
Found at i:85927359 original size:11 final size:11
Alignment explanation
Indices: 85927343--85927367 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
85927333 ATGTTTCAGC
85927343 TTTTTTTATTT
1 TTTTTTTATTT
85927354 TTTTTTTATTT
1 TTTTTTTATTT
85927365 TTT
1 TTT
85927368 GACAGTGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:85946531 original size:15 final size:15
Alignment explanation
Indices: 85946489--85946538 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
85946479 ATAACTTTGA
**
85946489 ATGCAAATG-ATCCG
1 ATGCAAATGCATGAG
85946503 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
85946518 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
85946532 ATGCAAA
1 ATGCAAA
85946539 AAGGACATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 10 0.32
16 6 0.19
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:85950159 original size:3 final size:3
Alignment explanation
Indices: 85950146--85950185 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
85950136 CAAATGTGAC
85950146 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
85950186 GTAGTAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:85950483 original size:6 final size:6
Alignment explanation
Indices: 85950472--85950504 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
85950462 AAAATATAAT
*
85950472 AAAATA AAAATA AAAA-A GAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
85950505 ATAGAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:85950495 original size:17 final size:17
Alignment explanation
Indices: 85950473--85950505 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
85950463 AAATATAATA
85950473 AAATAAAAATAAAAAAG
1 AAATAAAAATAAAAAAG
85950490 AAATAAAAATAAAAAA
1 AAATAAAAATAAAAAA
85950506 TAGAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (17 bp):
AAATAAAAATAAAAAAG
Found at i:85950504 original size:18 final size:18
Alignment explanation
Indices: 85950469--85950514 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
85950459 TATAAAATAT
85950469 AATA-AAATAAAAATAAA
1 AATAGAAATAAAAATAAA
85950486 AA-AGAAATAAAAATAAAA
1 AATAGAAATAAAAAT-AAA
85950504 AATAG-AATAAA
1 AATAGAAATAAA
85950515 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.04
17 12 0.46
18 11 0.42
19 2 0.08
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (18 bp):
AATAGAAATAAAAATAAA
Found at i:85950515 original size:22 final size:21
Alignment explanation
Indices: 85950462--85950516 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 21
85950452 TTTTACATAT
*
85950462 AAAATATAATAAAATAAAAATA
1 AAAATAGAAT-AAATAAAAATA
85950484 AAAA-AG---AAATAAAAATAA
1 AAAATAGAATAAATAAAAAT-A
85950502 AAAATAGAATAAATA
1 AAAATAGAATAAATA
85950517 TATATATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
17 10 0.37
18 5 0.19
19 2 0.07
21 1 0.04
22 9 0.33
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (21 bp):
AAAATAGAATAAATAAAAATA
Found at i:85960640 original size:50 final size:51
Alignment explanation
Indices: 85960580--85960690 Score: 179
Period size: 50 Copynumber: 2.2 Consensus size: 51
85960570 CCTAGGATGT
* *
85960580 CTTCGGCTACACTTATCTGATCAAGAACAAGTGA-AAGTGATAAGTGATAG
1 CTTCGGCTACACTTATCTGATCAAGAACAAATGATAAGTGAAAAGTGATAG
* *
85960630 CTTCGGCTACACTTATCTGATCAAGGACAAATGATAAGTGAAAAGTGGTAG
1 CTTCGGCTACACTTATCTGATCAAGAACAAATGATAAGTGAAAAGTGATAG
85960681 CTTCGGCTAC
1 CTTCGGCTAC
85960691 CTGATCAGTG
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
50 32 0.57
51 24 0.43
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (51 bp):
CTTCGGCTACACTTATCTGATCAAGAACAAATGATAAGTGAAAAGTGATAG
Found at i:85960704 original size:31 final size:31
Alignment explanation
Indices: 85960661--85960783 Score: 201
Period size: 31 Copynumber: 4.0 Consensus size: 31
85960651 CAAGGACAAA
*
85960661 TGATAAGTGAAAAGTGGTAGCTTCGGCTACC
1 TGATCAGTGAAAAGTGGTAGCTTCGGCTACC
* *
85960692 TGATCAGTGAAAAGTGGTAGCTTCGGTTGCC
1 TGATCAGTGAAAAGTGGTAGCTTCGGCTACC
*
85960723 TGATCAGTGAAAAATGGTAGCTTCGGCTACC
1 TGATCAGTGAAAAGTGGTAGCTTCGGCTACC
*
85960754 TGATCAGTGAATAGTGGTAGCTTCGGCTAC
1 TGATCAGTGAAAAGTGGTAGCTTCGGCTAC
85960784 AAGTGACAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 84 1.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (31 bp):
TGATCAGTGAAAAGTGGTAGCTTCGGCTACC
Found at i:85964532 original size:17 final size:17
Alignment explanation
Indices: 85964510--85964543 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
85964500 TTAATTTAAA
85964510 TAAATAAATTTCTCAAT
1 TAAATAAATTTCTCAAT
*
85964527 TAAATAATTTTCTCAAT
1 TAAATAAATTTCTCAAT
85964544 CCAATTCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATAAATTTCTCAAT
Found at i:85966768 original size:25 final size:26
Alignment explanation
Indices: 85966739--85966789 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
85966729 CTTATTTCAT
*
85966739 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
85966764 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
85966790 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:85966781 original size:26 final size:24
Alignment explanation
Indices: 85966751--85966800 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
85966741 AATAAAAAAT
*
85966751 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
85966777 TTTAAAAACATAAAAACAAATATA
1 TTTAAAAACATAAAAACAAATATA
85966801 AAGACAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.35
25 3 0.13
26 12 0.52
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:85966824 original size:22 final size:21
Alignment explanation
Indices: 85966786--85966828 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
85966776 ATTTAAAAAC
85966786 ATAAAAACAAATATAAAGACAA
1 ATAAAAACAAATATAAA-ACAA
*
85966808 ATAAAAA-TAATACTAAAACAA
1 ATAAAAACAAATA-TAAAACAA
85966829 TTCTTAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.16
Consensus pattern (21 bp):
ATAAAAACAAATATAAAACAA
Found at i:85979404 original size:20 final size:20
Alignment explanation
Indices: 85979371--85979408 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
85979361 ACTAATTGTG
*
85979371 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
85979391 CATGTGATGGTTAAATGT
1 CATGTGATGCTTAAATGT
85979409 GGTATATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:85987843 original size:20 final size:20
Alignment explanation
Indices: 85987820--85987859 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
85987810 TATTAAATTT
*
85987820 ATGATTTAAGGATTAGAGAA
1 ATGAGTTAAGGATTAGAGAA
*
85987840 ATGAGTTAAGGTTTAGAGAA
1 ATGAGTTAAGGATTAGAGAA
85987860 TAAATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.30
Consensus pattern (20 bp):
ATGAGTTAAGGATTAGAGAA
Found at i:85998042 original size:6 final size:6
Alignment explanation
Indices: 85998034--85998081 Score: 78
Period size: 6 Copynumber: 8.0 Consensus size: 6
85998024 TGGGGGACAT
* *
85998034 GGGCAT GGGCAC GGGCAT GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC
1 GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC
85998082 ATGATCCATC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.17, C:0.29, G:0.50, T:0.04
Consensus pattern (6 bp):
GGGCAC
Found at i:86006143 original size:26 final size:26
Alignment explanation
Indices: 86006114--86006221 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
86006104 TGGTACAAAT
86006114 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
86006140 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86006166 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86006192 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86006218 TGAT
1 TGAT
86006222 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86008037 original size:40 final size:40
Alignment explanation
Indices: 86007989--86008216 Score: 420
Period size: 40 Copynumber: 5.7 Consensus size: 40
86007979 GCAAACACAT
* * *
86007989 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
86008029 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
86008069 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
86008109 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
86008149 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
86008189 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
86008217 TCCAATGCTC
Statistics
Matches: 183, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:86010629 original size:22 final size:22
Alignment explanation
Indices: 86010603--86010648 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
86010593 GATTGATTGG
86010603 TGATATACATGTTTAAATAACA
1 TGATATACATGTTTAAATAACA
86010625 TGATATACATGTTTAAATAACA
1 TGATATACATGTTTAAATAACA
86010647 TG
1 TG
86010649 CATGCAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (22 bp):
TGATATACATGTTTAAATAACA
Found at i:86011328 original size:8 final size:8
Alignment explanation
Indices: 86011315--86011344 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
86011305 AGATCGGCAC
86011315 AAGCCGAA
1 AAGCCGAA
86011323 AAGCCGAA
1 AAGCCGAA
*
86011331 ATGCCGAA
1 AAGCCGAA
86011339 AAGCCG
1 AAGCCG
86011345 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:86011768 original size:27 final size:27
Alignment explanation
Indices: 86011730--86011838 Score: 152
Period size: 27 Copynumber: 4.1 Consensus size: 27
86011720 TGGAGGAAGC
86011730 GTCCTGGTGGCTATGCCACAATTATCT
1 GTCCTGGTGGCTATGCCACAATTATCT
86011757 GTCCTGGTGGCTATGCCAC-ATATATCT
1 GTCCTGGTGGCTATGCCACAAT-TATCT
* *
86011784 GTCCTGGTGGCAATGCCACGATTATCT
1 GTCCTGGTGGCTATGCCACAATTATCT
*
86011811 GAT-CTGGTGGCTCTGCCACAA-TATCT
1 G-TCCTGGTGGCTATGCCACAATTATCT
86011837 GT
1 GT
86011839 ATCTGGTGAC
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
25 1 0.01
26 8 0.11
27 63 0.84
28 3 0.04
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.32
Consensus pattern (27 bp):
GTCCTGGTGGCTATGCCACAATTATCT
Found at i:86011846 original size:54 final size:54
Alignment explanation
Indices: 86011730--86011838 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 54
86011720 TGGAGGAAGC
*
86011730 GTCCTGGTGGCTATGCCACAATTATCTGTCCTGGTGGCTATGCCACATATATCT
1 GTCCTGGTGGCAATGCCACAATTATCTGTCCTGGTGGCTATGCCACATATATCT
* *
86011784 GTCCTGGTGGCAATGCCACGATTATCTGAT-CTGGTGGCTCTGCCACA-ATATCT
1 GTCCTGGTGGCAATGCCACAATTATCTG-TCCTGGTGGCTATGCCACATATATCT
86011837 GT
1 GT
86011839 ATCTGGTGAC
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
53 8 0.16
54 42 0.82
55 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.32
Consensus pattern (54 bp):
GTCCTGGTGGCAATGCCACAATTATCTGTCCTGGTGGCTATGCCACATATATCT
Found at i:86014754 original size:43 final size:42
Alignment explanation
Indices: 86014705--86014852 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 42
86014695 CATCGAGATG
*
86014705 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-ATT-A
* *
86014749 -GATTACGTGTAAGACCGTGTCTGGGACATTGGCA-TGATTAA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGATT-A
* * * * * *
86014790 TCGATTTCGTGTAAGACCCTGTCTGGGTCAATGGCATCGATATA
1 T-GATTACATGTAAGACCATGTCTGGGACATTGGCATTGAT-TA
86014834 TGATTACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
86014853 ATTTGGGATA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 4 0.05
42 2 0.02
43 76 0.86
44 5 0.06
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGATTA
Found at i:86021608 original size:3 final size:3
Alignment explanation
Indices: 86021323--86021589 Score: 117
Period size: 3 Copynumber: 91.0 Consensus size: 3
86021313 TATTATTCAA
* ** *
86021323 ATT ATT ACT ATT ATT ATT ATT ATT CCT ATGT -GT ATT ATT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT A-TT
* * *
86021369 A-T ATG ATT GTT ATT -TCT ACT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
86021413 ATT ATT ATT ATT ATG AAT A-T ATC AGT ATT ATT AAT A-T ATT GTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * *
86021459 ATT AGT ATT ATT GTC AGT GTC AGT ATT ATT -TT CGTT ATCT -TT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT
* * * *
86021503 ATT TTT ATT TTT ATT ATT -TAT ATT ATT GTT ACT ATT -TT -TT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
86021546 ACT ATT ATT GTT A-T ATT ATC GTT ATT ATT CTT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
86021590 GTTAATGCAA
Statistics
Matches: 189, Mismatches: 59, Indels: 32
0.68 0.21 0.11
Matches are distributed among these distances:
2 20 0.11
3 161 0.85
4 8 0.04
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:86021904 original size:17 final size:18
Alignment explanation
Indices: 86021874--86021910 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
86021864 GTATTTCTAG
86021874 TACTATATTACA-TTTAT
1 TACTATATTACATTTTAT
86021891 TACT-TATTAGCATTTTAT
1 TACTATATTA-CATTTTAT
86021909 TA
1 TA
86021911 TTACTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 6 0.33
18 7 0.39
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.54
Consensus pattern (18 bp):
TACTATATTACATTTTAT
Found at i:86023622 original size:43 final size:43
Alignment explanation
Indices: 86023525--86023638 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
86023515 ATCGAGATGT
** * * *
86023525 GATTACATAAAAGACAATGTCTGGGACATTGGCATTATATTGA
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATTATAATGA
* *
86023568 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTTAAT-C
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATT-ATAATGA
* * *
86023611 GATTTCGTGTAAGACCCTGTCTAGGACA
1 GATTACATGTAAGACCATGTCTAGGACA
86023639 GTGACATCGA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 57 0.95
44 3 0.05
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTAGGACATTGGCATTATAATGA
Found at i:86024670 original size:13 final size:15
Alignment explanation
Indices: 86024635--86024668 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
86024625 GCCGTGTGCG
86024635 ACACACGGTCATGTT
1 ACACACGGTCATGTT
*
86024650 ACACACGGTCATTTT
1 ACACACGGTCATGTT
86024665 ACAC
1 ACAC
86024669 GGCCGTGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (15 bp):
ACACACGGTCATGTT
Found at i:86032388 original size:100 final size:100
Alignment explanation
Indices: 86032213--86032397 Score: 307
Period size: 100 Copynumber: 1.9 Consensus size: 100
86032203 ATTATTATTG
* * *
86032213 CTTAAGAATACATCGAACCTTTTGACGCGAAGAGAGATGACAACCAAGTACCCCACCCCGGTTAC
1 CTTAAGAACACATCGAACCTTTTGACACGAAGAGAGATGACAACCAAGCACCCCACCCCGGTTAC
* *
86032278 TTAGCTCAACATACTCCTAATTTATTTATATTTTT
66 TTAACCCAACATACTCCTAATTTATTTATATTTTT
* *
86032313 CTTAAGAACATATCGAACCTTTTGACACGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTAC
1 CTTAAGAACACATCGAACCTTTTGACACGAAGAGAGATGACAACCAAGCACCCCACCCCGGTTAC
86032378 TTAACCCAACATACTCCTAA
66 TTAACCCAACATACTCCTAA
86032398 AAAATTTATT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.25
Consensus pattern (100 bp):
CTTAAGAACACATCGAACCTTTTGACACGAAGAGAGATGACAACCAAGCACCCCACCCCGGTTAC
TTAACCCAACATACTCCTAATTTATTTATATTTTT
Found at i:86033431 original size:12 final size:11
Alignment explanation
Indices: 86033423--86033483 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 11
86033413 AAAATAAAGT
86033423 AATAAATAATAA
1 AATAAATAAT-A
86033435 AATAAAATAATA
1 AAT-AAATAATA
*
86033447 AAT-ACTAATAA
1 AATAAATAAT-A
*
86033458 AATGAAATAAAA
1 AAT-AAATAATA
86033470 TAATAAATAATA
1 -AATAAATAATA
86033482 AA
1 AA
86033484 AATTAAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
10 5 0.12
11 6 0.15
12 15 0.38
13 14 0.35
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (11 bp):
AATAAATAATA
Found at i:86033444 original size:13 final size:13
Alignment explanation
Indices: 86033426--86033476 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
86033416 ATAAAGTAAT
86033426 AAATAATAAAATA
1 AAATAATAAAATA
86033439 AAATAATAAATACTA
1 AAATAATAAA-A-TA
*
86033454 ATAA-AATGAAATA
1 A-AATAATAAAATA
86033467 AAATAATAAA
1 AAATAATAAA
86033477 TAATAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 2 0.06
13 18 0.56
14 2 0.06
15 8 0.25
16 2 0.06
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (13 bp):
AAATAATAAAATA
Found at i:86033459 original size:23 final size:20
Alignment explanation
Indices: 86033413--86033476 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
86033403 TCAATATCCA
*
86033413 AAAATAAAGTAATAAATAAT
1 AAAATAAAATAATAAATAAT
*
86033433 AAAATAAAATAATAAATACT
1 AAAATAAAATAATAAATAAT
86033453 --AATAAAATGAAATAAAATAAT
1 AAAATAAAAT--AAT-AAATAAT
86033474 AAA
1 AAA
86033477 TAATAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 8 0.22
20 21 0.58
21 6 0.17
23 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAATAAAATAATAAATAAT
Found at i:86033481 original size:10 final size:10
Alignment explanation
Indices: 86033422--86033486 Score: 50
Period size: 10 Copynumber: 6.8 Consensus size: 10
86033412 AAAAATAAAG
86033422 TAATAAATAA
1 TAATAAATAA
*
86033432 TAA-AATAAAA
1 TAATAA-ATAA
*
86033442 TAATAAATAC
1 TAATAAATAA
*
86033452 TAATAAAATGA
1 TAAT-AAATAA
86033463 -AAT-AA-AA
1 TAATAAATAA
86033470 TAATAAATAA
1 TAATAAATAA
86033480 TAA-AAAT
1 TAATAAAT
86033487 TAAGAAAAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
7 1 0.02
8 5 0.12
9 8 0.19
10 23 0.53
11 6 0.14
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (10 bp):
TAATAAATAA
Found at i:86033494 original size:25 final size:26
Alignment explanation
Indices: 86033415--86033508 Score: 75
Period size: 28 Copynumber: 3.5 Consensus size: 26
86033405 AATATCCAAA
* *
86033415 AATAAAGTAATAAATAATAAAATAAAAT
1 AATAAA-TAATAAA-AATGAAAGAAAAT
* *
86033443 AATAAATACTAATAAAATGAAATAAAAT
1 AATAAATAAT-A-AAAATGAAAGAAAAT
*
86033471 AATAAATAATAAAAAT-TAAGAAAAGT
1 AATAAATAATAAAAATGAAAGAAAA-T
*
86033497 AA-AAAAAATAAA
1 AATAAATAATAAA
86033509 TGTTGGGTTG
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
25 15 0.26
26 8 0.14
27 4 0.07
28 28 0.49
29 2 0.04
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.22
Consensus pattern (26 bp):
AATAAATAATAAAAATGAAAGAAAAT
Found at i:86033505 original size:35 final size:35
Alignment explanation
Indices: 86033439--86033507 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
86033429 TAATAAAATA
* * *
86033439 AAATAATAAATACTAATAAAATGAAATAAAATAAT
1 AAATAATAAAAACTAAGAAAATGAAAAAAAATAAT
*
86033474 AAATAATAAAAATTAAGAAAA-GTAAAAAAAATAA
1 AAATAATAAAAACTAAGAAAATG-AAAAAAAATAA
86033508 ATGTTGGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 1 0.03
35 28 0.97
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.22
Consensus pattern (35 bp):
AAATAATAAAAACTAAGAAAATGAAAAAAAATAAT
Found at i:86040180 original size:96 final size:95
Alignment explanation
Indices: 86039944--86040181 Score: 239
Period size: 96 Copynumber: 2.5 Consensus size: 95
86039934 CACATTTCGA
* * * * * * *
86039944 GGCCGATGCAATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATATCAATGCCATGTCCT
1 GGCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATCAATACCAATACCATGTCCC
*
86040009 AGAAATGGTCTTACGACGGCTCTCATAAGGT
66 AGAAATGGTCCTACGACGGCTCTCATAA-GT
* * * * * *
86040040 GGCCGATGCCATGCCCCAGACATAGTCTTAC-TCTAGCGCACATATCAATGCCGATACCATGTCC
1 GGCCGATGCCATGTCCCAGACATGGTCTTACAT-TAGCTCTCATATCAATACCAATACCATGTCC
*
86040104 CAGACATGGTCCTAC-ACTGGCTCTCACTACA-T
65 CAGAAATGGTCCTACGAC-GGCTCTCA-TA-AGT
* * * *
86040136 TGCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATC
1 GGCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATC
86040182 GTGGCTGATG
Statistics
Matches: 114, Mismatches: 23, Indels: 10
0.78 0.16 0.07
Matches are distributed among these distances:
95 2 0.02
96 108 0.95
97 3 0.03
98 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (95 bp):
GGCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATCAATACCAATACCATGTCCC
AGAAATGGTCCTACGACGGCTCTCATAAGT
Found at i:86040186 original size:144 final size:144
Alignment explanation
Indices: 86039913--86040230 Score: 338
Period size: 144 Copynumber: 2.2 Consensus size: 144
86039903 GCTATGTTCT
* * * * * * * *
86039913 AAACATGGTCTTACACTGGCTCACATTTCGAGGCCGATGCAATGTCCCAGACATGGTCTTACACT
1 AAACATAGTCTTACACTAGCACACATATCAATGCCGATACAATGTCCCAGACATGGTCCTACACT
* * *
86039978 AGCTCTCGTCTCAATATCAATGCCATGTCCTAGAAATGGTCTTACGACGGCTCTCATAAGGTGGC
66 AGCTCTCGACTCAATACCAATGCCATGTCCTAGAAATGGTCTTACGACGGCTCTCATAACGTGGC
*
86040043 CGATGCCATGCCCC
131 CGATGCCATACCCC
* * * *
86040057 AGACATAGTCTTACTCTAGCGCACATATCAATGCCGATACCATGTCCCAGACATGGTCCTACACT
1 AAACATAGTCTTACACTAGCACACATATCAATGCCGATACAATGTCCCAGACATGGTCCTACACT
* * * * * *
86040122 GGCTCTC-ACTACATTGCCGATGCCATGTTCC-A-AACATGGTCTTAC-ATTGGCTCTCATATCG
66 AGCTCTCGACT-CAATACCAATGCCATG-TCCTAGAA-ATGGTCTTACGA-CGGCTCTCATAACG
* **
86040183 TGGCTGATGCCATATTCC
127 TGGCCGATGCCATACCCC
*
86040201 AAATATAGTCTTACACTAGCACACATATCA
1 AAACATAGTCTTACACTAGCACACATATCA
86040231 CCCAAATGTC
Statistics
Matches: 142, Mismatches: 28, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
143 5 0.04
144 134 0.94
145 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (144 bp):
AAACATAGTCTTACACTAGCACACATATCAATGCCGATACAATGTCCCAGACATGGTCCTACACT
AGCTCTCGACTCAATACCAATGCCATGTCCTAGAAATGGTCTTACGACGGCTCTCATAACGTGGC
CGATGCCATACCCC
Found at i:86040192 original size:48 final size:48
Alignment explanation
Indices: 86039906--86040217 Score: 206
Period size: 48 Copynumber: 6.5 Consensus size: 48
86039896 TGTCGGTGCT
* * * *
86039906 ATGTTCTAAACATGGTCTTACACTGGCTCACATTTCGA-GGCCGATGCA
1 ATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCCGATGCC
* * * * * ** *
86039954 ATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAT-ATCAATGCC
1 ATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCCGATGCC
***
86040002 ATG-TCCTAGAA-ATGGTCTTACGAC-GGCTCTCATAAGGTGGCCGATGCC
1 ATGTTCC-A-AACATGGTCTTAC-ACTGGCTCTCATATCATGGCCGATGCC
** * * * * * * *
86040050 ATGCCCCAGACATAGTCTTACTCTAGCGCACATATCAAT-GCCGATACC
1 ATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCCGATGCC
* * * *
86040098 ATGTCCCAGACATGGTCCTACACTGGCTCTCACTA-CATTGCCGATGCC
1 ATGTTCCAAACATGGTCTTACACTGGCTCTCA-TATCATGGCCGATGCC
* * *
86040146 ATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTGGCTGATGCC
1 ATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCC
* * *
86040194 ATATTCCAAATATAGTCTTACACT
1 ATGTTCCAAACATGGTCTTACACT
86040218 AGCACACATA
Statistics
Matches: 199, Mismatches: 53, Indels: 24
0.72 0.19 0.09
Matches are distributed among these distances:
47 9 0.05
48 182 0.91
49 8 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCC
Found at i:86040935 original size:53 final size:53
Alignment explanation
Indices: 86040872--86040982 Score: 213
Period size: 53 Copynumber: 2.1 Consensus size: 53
86040862 CATAAAATAA
86040872 TACTAAGAATAATTTCTCCGACCTCGAGTTAGTGGTTCTGAAACCACTGTTCC
1 TACTAAGAATAATTTCTCCGACCTCGAGTTAGTGGTTCTGAAACCACTGTTCC
*
86040925 TACTAAGAATAATTTCTTCGACCTCGAGTTAGTGGTTCTGAAACCACTGTTCC
1 TACTAAGAATAATTTCTCCGACCTCGAGTTAGTGGTTCTGAAACCACTGTTCC
86040978 TACTA
1 TACTA
86040983 GGCCCAAAAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (53 bp):
TACTAAGAATAATTTCTCCGACCTCGAGTTAGTGGTTCTGAAACCACTGTTCC
Found at i:86042104 original size:10 final size:10
Alignment explanation
Indices: 86042090--86042139 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
86042080 GAAATGACCT
*
86042090 TTTTTTATAT
1 TTTTTTATAA
86042100 TTTTTTATGAA
1 TTTTTTAT-AA
*
86042111 ATTTTTATAA
1 TTTTTTATAA
*
86042121 TTTTTAATAA
1 TTTTTTATAA
86042131 TTTTTTATA
1 TTTTTTATA
86042140 GTTTAAAATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
10 26 0.76
11 8 0.24
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:86042115 original size:21 final size:20
Alignment explanation
Indices: 86042091--86042139 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
86042081 AAATGACCTT
* *
86042091 TTTTTATATTTTTTTATGAAA
1 TTTTTATAATTTTTAAT-AAA
*
86042112 TTTTTATAATTTTTAATAAT
1 TTTTTATAATTTTTAATAAA
86042132 TTTTTATA
1 TTTTTATA
86042140 GTTTAAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTTATAATTTTTAATAAA
Found at i:86042425 original size:7 final size:6
Alignment explanation
Indices: 86042390--86042450 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
86042380 CTTTTATACT
* * *
86042390 ATTAAA CTTAAA ATT-AA ATCTAAA ATTAAA ATTTAAA ACTAAT ATCTAAA
1 ATTAAA ATTAAA ATTAAA AT-TAAA ATTAAA A-TTAAA ATTAAA AT-TAAA
*
86042440 ATTAAA TTTAA
1 ATTAAA ATTAA
86042451 GTTTTCAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
5 4 0.09
6 25 0.57
7 15 0.34
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (6 bp):
ATTAAA
Found at i:86042427 original size:25 final size:25
Alignment explanation
Indices: 86042390--86042450 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
86042380 CTTTTATACT
* *
86042390 ATTAAACTTAAAATTAA-ATCTAAA
1 ATTAAATTTAAAACTAATATCTAAA
86042414 ATTAAAATTTAAAACTAATATCTAAA
1 ATT-AAATTTAAAACTAATATCTAAA
86042440 ATTAAATTTAA
1 ATTAAATTTAA
86042451 GTTTTCAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 3 0.09
25 20 0.61
26 10 0.30
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (25 bp):
ATTAAATTTAAAACTAATATCTAAA
Found at i:86042444 original size:19 final size:18
Alignment explanation
Indices: 86042392--86042445 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
86042382 TTTATACTAT
* *
86042392 TAAACTTAAAATTAAATC
1 TAAAATTAAAATTAAAAC
86042410 TAAAATTAAAATTTAAAAC
1 TAAAATTAAAA-TTAAAAC
*
86042429 TAATATCTAAAATTAAA
1 TAAAAT-TAAAATTAAA
86042446 TTTAAGTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.32
19 16 0.52
20 5 0.16
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATTAAAATTAAAAC
Found at i:86045694 original size:2 final size:2
Alignment explanation
Indices: 86045687--86045711 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86045677 TTTATAGTAA
86045687 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
86045712 CCATCAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86049407 original size:13 final size:13
Alignment explanation
Indices: 86049387--86049420 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86049377 AATAAATACT
*
86049387 AATTAATTAATTA
1 AATTAATTAACTA
*
86049400 ATTTAATTAACTA
1 AATTAATTAACTA
86049413 AATTAATT
1 AATTAATT
86049421 TCTTAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAATTAACTA
Found at i:86053513 original size:35 final size:35
Alignment explanation
Indices: 86053451--86053617 Score: 176
Period size: 35 Copynumber: 4.8 Consensus size: 35
86053441 TTTCCTTATT
* * * *
86053451 GAAATACCATGCCTACATTTTACAACTCGGTATGG
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
** **
86053486 GAAATGTCATACCTACGTTTCTTAACTCAGTAT-G
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
*
86053520 GATAATACCATACCTACGCTTCACAACTCAGTATGG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATGG
** * *
86053556 TTAATACCATACCTACGTTTCACAATTTAGTAT-G
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
*
86053590 GATGATACCATACCTACGTTTCACAACT
1 GA-AATACCATACCTACGTTTCACAACT
86053618 TTGCCATGGA
Statistics
Matches: 107, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
34 4 0.04
35 102 0.95
36 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (35 bp):
GAAATACCATACCTACGTTTCACAACTCAGTATGG
Found at i:86058460 original size:16 final size:18
Alignment explanation
Indices: 86058423--86058462 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
86058413 GAATCCTTGT
*
86058423 TAAAATAAAATATAGTAG
1 TAAAATAAAATATAGAAG
86058441 TAAAATAAAATA-A-AAG
1 TAAAATAAAATATAGAAG
86058457 TAAAAT
1 TAAAAT
86058463 CTATATAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 1 0.05
18 12 0.57
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (18 bp):
TAAAATAAAATATAGAAG
Found at i:86067348 original size:6 final size:6
Alignment explanation
Indices: 86067337--86067365 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
86067327 TTTTAATATA
86067337 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
86067366 AAATAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:86069640 original size:23 final size:21
Alignment explanation
Indices: 86069581--86069640 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 21
86069571 GATTATTTTT
*
86069581 ATATAAAAATAAATTTTAAAA
1 ATATAAAAATAAATTCTAAAA
86069602 ATATAATAAATCAAATATACTAAAA
1 ATATAA-AAAT-AAAT-T-CTAAAA
*
86069627 ATATTAAAATAAAT
1 ATATAAAAATAAAT
86069641 GCTTCTCAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 6 0.18
22 4 0.12
23 8 0.24
24 5 0.15
25 10 0.30
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (21 bp):
ATATAAAAATAAATTCTAAAA
Found at i:86069833 original size:22 final size:22
Alignment explanation
Indices: 86069780--86069836 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
86069770 ATATCCAAAC
**
86069780 AATAACAATAAAATAGTAGCAA
1 AATAACAACGAAATAGTAGCAA
* * *
86069802 TATAATAACGAAATTGTAGCAA
1 AATAACAACGAAATAGTAGCAA
86069824 AATAACAACGAAA
1 AATAACAACGAAA
86069837 CAACAACAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.60, C:0.11, G:0.11, T:0.19
Consensus pattern (22 bp):
AATAACAACGAAATAGTAGCAA
Found at i:86070630 original size:6 final size:6
Alignment explanation
Indices: 86070621--86070676 Score: 69
Period size: 6 Copynumber: 9.2 Consensus size: 6
86070611 TTTATTTTAT
* *
86070621 TTAATA TTAATA TAATTATA TTTAT- TTAATA TTAATA TTAATA TTAATA
1 TTAATA TTAATA T--TAATA TTAATA TTAATA TTAATA TTAATA TTAATA
86070670 TTAATA T
1 TTAATA T
86070677 AAAATTTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
5 4 0.09
6 36 0.80
8 5 0.11
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTAATA
Found at i:86070645 original size:25 final size:24
Alignment explanation
Indices: 86070612--86070658 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
86070602 GAGGAGATTT
86070612 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAATATTAATATAA
86070636 TTATATTTATTTAATATTAATAT
1 TTAT-TTTATTTAATATTAATAT
86070659 TAATATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:86070685 original size:18 final size:17
Alignment explanation
Indices: 86070644--86070685 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
86070634 AATTATATTT
*
86070644 ATTTAATATTAATATTA
1 ATTTAATATTAATATAA
86070661 ATATTAATATTAATATAAA
1 AT-TTAATATTAATAT-AA
86070680 ATTTAA
1 ATTTAA
86070686 AATTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 17 0.77
19 3 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTTAATATTAATATAA
Found at i:86070708 original size:21 final size:22
Alignment explanation
Indices: 86070684--86070725 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
86070674 TATAAAATTT
*
86070684 AAAATTTTTAT-TATATTTTTG
1 AAAATTTATATGTATATTTTTG
86070705 AAAATTTATATGTATATTTTT
1 AAAATTTATATGTATATTTTT
86070726 AAGATTAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
AAAATTTATATGTATATTTTTG
Found at i:86072402 original size:32 final size:32
Alignment explanation
Indices: 86072366--86072438 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
86072356 GAAATAAAGC
86072366 TCCTAAAAACAAAATCAGGAAACCTAAACAGA
1 TCCTAAAAACAAAATCAGGAAACCTAAACAGA
* * *
86072398 TCCTAAAAACAAAATTAGGAAATCTAAATAGA
1 TCCTAAAAACAAAATCAGGAAACCTAAACAGA
86072430 -CCTTAAAAA
1 TCC-TAAAAA
86072439 ATCAATAGCC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 2 0.05
32 35 0.95
ACGTcount: A:0.56, C:0.18, G:0.08, T:0.18
Consensus pattern (32 bp):
TCCTAAAAACAAAATCAGGAAACCTAAACAGA
Found at i:86077394 original size:40 final size:35
Alignment explanation
Indices: 86077328--86077457 Score: 109
Period size: 35 Copynumber: 3.6 Consensus size: 35
86077318 TATGGAAAAG
*
86077328 TGTGAAACGCAGGTATGGTATCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
86077363 TGTGAAACGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAACGTAGGTATGG---TATC--ATCCATACTGAGT
** * ** * *
86077403 TAAGAAACGTAGATATGACAT-TTCCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCAT-CCATACTGAGT
* *
86077438 TGTAAAATGTAGGTATGGTA
1 TGTGAAACGTAGGTATGGTA
86077458 CTTCAATGAG
Statistics
Matches: 74, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
34 1 0.01
35 40 0.54
37 2 0.03
38 4 0.05
40 27 0.36
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
Found at i:86081809 original size:13 final size:13
Alignment explanation
Indices: 86081793--86081818 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86081783 ATGATACATA
86081793 AATTAAAATTAAG
1 AATTAAAATTAAG
86081806 AATTAAAATTAAG
1 AATTAAAATTAAG
86081819 TCATTTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
AATTAAAATTAAG
Found at i:86083009 original size:18 final size:16
Alignment explanation
Indices: 86082986--86083047 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 16
86082976 TCAGTAGCAT
86082986 TCAGTTACTCTATAACAG
1 TCAGTTA-TC-ATAACAG
86083004 TCAGTTATACAATAACAG
1 TCAGTTAT-C-ATAACAG
*
86083022 TCATTTATTCAGTAACAG
1 TCAGTTA-TCA-TAACAG
*
86083040 TCAATTAT
1 TCAGTTAT
86083048 TCCGTAGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.08
18 34 0.89
19 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (16 bp):
TCAGTTATCATAACAG
Found at i:86083048 original size:18 final size:18
Alignment explanation
Indices: 86082997--86083049 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
86082987 CAGTTACTCT
* *
86082997 ATAACAGTCAGTTATACA
1 ATAACAGTCAATTATTCA
*
86083015 ATAACAGTCATTTATTCA
1 ATAACAGTCAATTATTCA
*
86083033 GTAACAGTCAATTATTC
1 ATAACAGTCAATTATTC
86083050 CGTAGCAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:86083206 original size:6 final size:6
Alignment explanation
Indices: 86083191--86083224 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
86083181 CACCGCAATG
*
86083191 GTAA-A GTAACA GTAACA GTAACA GTCACA GTAAC
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAAC
86083225 GGTACACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:86084613 original size:24 final size:25
Alignment explanation
Indices: 86084579--86084625 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
86084569 ACATACATGT
86084579 ATTACAAATGT-ATGTATTTTATTA
1 ATTACAAATGTCATGTATTTTATTA
* *
86084603 ATTACACATGTCATTTATTTTAT
1 ATTACAAATGTCATGTATTTTAT
86084626 CACACACTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (25 bp):
ATTACAAATGTCATGTATTTTATTA
Found at i:86086929 original size:33 final size:33
Alignment explanation
Indices: 86086892--86086988 Score: 79
Period size: 33 Copynumber: 3.2 Consensus size: 33
86086882 GAAAATATAA
86086892 TAAAAAGTGGTTATATTAAAATTTTAAAATGAT
1 TAAAAAGTGGTTATATTAAAATTTTAAAATGAT
* * *
86086925 T-AAAA-----TACA--CAAA-TTGAAAAT-AT
1 TAAAAAGTGGTTATATTAAAATTTTAAAATGAT
86086948 AATAAAAAGTGGTTATATTAAAATTTTAAAATGAT
1 --TAAAAAGTGGTTATATTAAAATTTTAAAATGAT
86086983 TAAAAA
1 TAAAAA
86086989 TAAAATAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 24
0.61 0.08 0.32
Matches are distributed among these distances:
23 2 0.04
24 7 0.15
25 4 0.09
26 4 0.09
27 3 0.07
31 3 0.07
32 4 0.09
33 10 0.22
34 7 0.15
35 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (33 bp):
TAAAAAGTGGTTATATTAAAATTTTAAAATGAT
Found at i:86086939 original size:58 final size:58
Alignment explanation
Indices: 86086870--86086987 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
86086860 TTCTTAAAAC
86086870 AATACACAAATTGAAAATATAATAAAAAGTGGTTATATTAAAATTTTAAAATGATTAA
1 AATACACAAATTGAAAATATAATAAAAAGTGGTTATATTAAAATTTTAAAATGATTAA
86086928 AATACACAAATTGAAAATATAATAAAAAGTGGTTATATTAAAATTTTAAAATGATTAA
1 AATACACAAATTGAAAATATAATAAAAAGTGGTTATATTAAAATTTTAAAATGATTAA
86086986 AA
1 AA
86086988 ATAAAATAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.32
Consensus pattern (58 bp):
AATACACAAATTGAAAATATAATAAAAAGTGGTTATATTAAAATTTTAAAATGATTAA
Found at i:86089182 original size:22 final size:22
Alignment explanation
Indices: 86089154--86089198 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
86089144 TGTTAATGGT
*
86089154 AGGCCCACAGTCGATCGGAACA
1 AGGCCCACAGTCGATCAGAACA
*
86089176 AGGCCCACAGTCTATCAGAACA
1 AGGCCCACAGTCGATCAGAACA
86089198 A
1 A
86089199 CCCGTGCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.31, G:0.22, T:0.11
Consensus pattern (22 bp):
AGGCCCACAGTCGATCAGAACA
Found at i:86096991 original size:127 final size:130
Alignment explanation
Indices: 86096653--86096992 Score: 465
Period size: 131 Copynumber: 2.6 Consensus size: 130
86096643 TAACTATTTA
* *
86096653 TTTAAAAATTCTTTAAAACGAAGGCAATGTTCGGTGTTTGGCAATTCGGGGAATCGTGTCCTATC
1 TTTAAAAATTC-TTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * *
86096718 GTGCTGGGTTGCAATTTGCCGCTTGTTCGAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
65 GTGCTGGGTTGCGATTTGCCGCTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCACGT
86096783 C
130 C
* *
86096784 TTTAAAAATTCTTCAAAACGAGGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTT-AAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
*
86096849 GTGCTGGGTTGCGATTT-CCTGTTTGTTCAAAATAATCGAATATT-CTCTTAGAATTTCACTCAC
65 GTGCTGGGTTGCGATTTGCC-GCTTGTTCAAAATAATCGAATATTCCT-TTAGAATTTCACTCAC
86096912 GT-
128 GTC
** * * * *
86096914 TTTCTAAATTC-TAAAAC-AAGGCAATGTTCAATGTTTGGAAATCCGGGGAATCGTGCCCTACCG
1 TTTAAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCG
*
86096977 TGCTGGGTTTCGATTT
66 TGCTGGGTTGCGATTT
86096993 TTCTTTGGAC
Statistics
Matches: 188, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
127 55 0.29
128 5 0.03
129 1 0.01
130 15 0.08
131 112 0.60
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (130 bp):
TTTAAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCG
TGCTGGGTTGCGATTTGCCGCTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCACGTC
Found at i:86108599 original size:89 final size:89
Alignment explanation
Indices: 86108485--86109138 Score: 874
Period size: 89 Copynumber: 7.4 Consensus size: 89
86108475 TAGTGAATTC
86108485 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
* *
86108550 TAGCAGGGTAACAGGCCGAAGATT
66 TAGTAGGGTAACAGGCTGAAGATT
*
86108574 ACAAATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
* * *
86108639 TAGCAGGGTAACAAGCCGAAGATT
66 TAGTAGGGTAACAGGCTGAAGATT
* * ** ** *
86108663 ACAGATCTTGTCTCTCTGAAGTCGCAGTGGAACAGATCGAAGACGGTGAGCTTTAACCCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
* *
86108728 TTGTAGGGTAACAGGCCGAAGATT
66 TAGTAGGGTAACAGGCTGAAGATT
*
86108752 GA-AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGAAAGCAAGCCTTAACCCCCTAA
1 -ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAA
*
86108816 GTAGTAGGGTAATAGGCTGAAGATT
65 GTAGTAGGGTAACAGGCTGAAGATT
* * * * *
86108841 GCAGATCTTGTCTCCCTAAAGTTACAGTTGAGCAGATCGAAG-AAGCAAGCCTTAACCCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
86108905 TAGTAGGGTAACAGGCTGAAGATT
66 TAGTAGGGTAACAGGCTGAAGATT
* * * * **
86108929 ACAAATTTTGTCTCCCTGAAGTTTCAGTGGAACAGATCGAAG-ACGTTGAGCCTTAACCCCCTAA
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAG-CAAGCCTTAACCCCCTAA
86108993 GTAGTAGGGTAACAGGCTG-A-ATT
65 GTAGTAGGGTAACAGGCTGAAGATT
* * * ** *
86109016 GCAGATCTTGTCTCCCTGAAGTTACAGTGGAACAGATCGAAGACAGTGAGCCTTAACTCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
*
86109081 TGGTAGGGTAACAGGCTG-A-ATT
66 TAGTAGGGTAACAGGCTGAAGATT
* * * *
86109103 AC-GAGTCTTATCTCCCTGAAGTGGCAGAGGAGCAGA
1 ACAGA-TCTTGTCTCCCTGAAGTTGCAGTGGAACAGA
86109139 CTAAATATAA
Statistics
Matches: 507, Mismatches: 53, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
86 2 0.00
87 107 0.21
88 84 0.17
89 313 0.62
90 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (89 bp):
ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
TAGTAGGGTAACAGGCTGAAGATT
Found at i:86108660 original size:44 final size:44
Alignment explanation
Indices: 86108522--86108660 Score: 140
Period size: 44 Copynumber: 3.1 Consensus size: 44
86108512 TGGAACAGAT
*
86108522 CGAAGAAAGCAAGCCTTAACCCCCTAAGTAGCAGGGTAACAGGC
1 CGAAGAAAGCAAGCCTTAACCCCCTAAGTAGCAGGGTAACAAGC
* ** ** * * *
86108566 CGAAGATTA-CAAATCTTGTCTCCCTGAAGTTGCAGTGG-AAC-AGAT
1 CGAAGA-AAGCAAGCCTTAACCCCCT-AAGTAGCAG-GGTAACAAG-C
86108611 CGAAGAAAGCAAGCCTTAACCCCCTAAGTAGCAGGGTAACAAGC
1 CGAAGAAAGCAAGCCTTAACCCCCTAAGTAGCAGGGTAACAAGC
86108655 CGAAGA
1 CGAAGA
86108661 TTACAGATCT
Statistics
Matches: 71, Mismatches: 17, Indels: 14
0.70 0.17 0.14
Matches are distributed among these distances:
43 2 0.03
44 36 0.51
45 31 0.44
46 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (44 bp):
CGAAGAAAGCAAGCCTTAACCCCCTAAGTAGCAGGGTAACAAGC
Found at i:86110827 original size:40 final size:40
Alignment explanation
Indices: 86110783--86110862 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
86110773 ATTTTATACA
86110783 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
1 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
86110823 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
1 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
86110863 ATCCTACATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (40 bp):
TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
Found at i:86111977 original size:131 final size:129
Alignment explanation
Indices: 86111739--86112078 Score: 400
Period size: 131 Copynumber: 2.6 Consensus size: 129
86111729 TAACAATTCA
* * *
86111739 TTTAAAAATTCTTTAAAACGAATGCAATATTCGGTGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTC-TTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * * * *
86111804 GTGCTGGGTTGCAATTTTTCGCTTGTTCGAAATAATCAAATATTCCTTTGGAATTTCACTCATGT
65 GTGCTGGGTTACGATTTCTCACTTGTTCAAAATAATCAAATATTCCCTTAGAATTTCACTCACGT
* * *
86111869 CTTTAAAAATTCTTCAAAACGAGGGTAATGTTCGATGTTTGGCAGTTCGGGGAATCGTGCCCTAT
1 -TTTAAAAATTCTT-AAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
* *
86111934 CGTGCTGGGTTACGATTTC-CTATTTGTTCAAAATAATCGAATATTCCCTTAGAATTTCACTCAC
64 CGTGCTGGGTTACGATTTCTC-ACTTGTTCAAAATAATCAAATATTCCCTTAGAATTTCACTCAC
86111998 GT
128 GT
** * * * *
86112000 TTTCTAAATTC-TAAAAC-AAGGCAATGTTCAATGTTTAGAAATCCGGGGAATCGTGCCCTA-CT
1 TTTAAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC-
*
86112062 GTGCTGGGTTTCGATTT
65 GTGCTGGGTTACGATTT
86112079 TTCGTTGGAC
Statistics
Matches: 180, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
126 1 0.01
127 52 0.29
128 5 0.03
129 1 0.01
130 12 0.07
131 109 0.61
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (129 bp):
TTTAAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCG
TGCTGGGTTACGATTTCTCACTTGTTCAAAATAATCAAATATTCCCTTAGAATTTCACTCACGT
Found at i:86117643 original size:5 final size:5
Alignment explanation
Indices: 86117633--86117658 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
86117623 TATATATATC
86117633 ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT A
86117659 AATTTCTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:86117801 original size:23 final size:23
Alignment explanation
Indices: 86117775--86117826 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
86117765 TATTTAGGTA
* *
86117775 TTATTTAAAAATCATTTTATTAC
1 TTATTTAAAAATCATTATATAAC
* * *
86117798 TTATTTTAAATTGATTATATAAC
1 TTATTTAAAAATCATTATATAAC
86117821 TTATTT
1 TTATTT
86117827 TGAACCCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.56
Consensus pattern (23 bp):
TTATTTAAAAATCATTATATAAC
Found at i:86147194 original size:15 final size:17
Alignment explanation
Indices: 86147174--86147210 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
86147164 AAAGGTTGAG
86147174 ATGAATATAT-TTGG-A
1 ATGAATATATATTGGTA
*
86147189 ATGAATGTATATTGGTA
1 ATGAATATATATTGGTA
86147206 ATGAA
1 ATGAA
86147211 ATTGATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 9 0.47
16 4 0.21
17 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATGAATATATATTGGTA
Found at i:86151897 original size:17 final size:18
Alignment explanation
Indices: 86151872--86151905 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86151862 CATTTGGGCC
86151872 GTGTGGG-CCACACGGGT
1 GTGTGGGCCCACACGGGT
*
86151889 GTGTTGGCCCACACGGG
1 GTGTGGGCCCACACGGG
86151906 CAGGCCACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (18 bp):
GTGTGGGCCCACACGGGT
Found at i:86160869 original size:39 final size:38
Alignment explanation
Indices: 86160795--86160869 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 38
86160785 TAAAATCTAC
*
86160795 TAAAAAATAAAAAATAAAAAAATAAAAAGTAGTTTTAA
1 TAAAAAATAAAAAATAAAAAAATAAAAAATAGTTTTAA
* *
86160833 TAAAAATTAAAAACATAAAATAATAAATAAAT-GTTTT
1 TAAAAAATAAAAA-ATAAAAAAATAAA-AAATAGTTTT
86160870 TAAACATCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 12 0.38
39 17 0.53
40 3 0.09
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (38 bp):
TAAAAAATAAAAAATAAAAAAATAAAAAATAGTTTTAA
Found at i:86177604 original size:12 final size:12
Alignment explanation
Indices: 86177587--86177613 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86177577 CATGGTAGTA
86177587 TGGTAGGCCATG
1 TGGTAGGCCATG
86177599 TGGTAGGCCATG
1 TGGTAGGCCATG
86177611 TGG
1 TGG
86177614 AAGCACACGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.44, T:0.26
Consensus pattern (12 bp):
TGGTAGGCCATG
Found at i:86185390 original size:19 final size:19
Alignment explanation
Indices: 86185335--86185395 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 19
86185325 ATCAAAACAC
* *
86185335 GATTTTCCTAAAAACTAA-
1 GATTTTCCTAAATACAAAT
* *
86185353 GGTTTTCCTAAATATAAAT
1 GATTTTCCTAAATACAAAT
86185372 GATTTTACCTAAA-ACAAAT
1 GATTTT-CCTAAATACAAAT
*
86185391 TATTT
1 GATTT
86185396 GGGTTTCCAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
18 14 0.41
19 14 0.41
20 6 0.18
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (19 bp):
GATTTTCCTAAATACAAAT
Found at i:86203271 original size:18 final size:18
Alignment explanation
Indices: 86203248--86203285 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
86203238 TGCTTCAGTG
*
86203248 GTTAAGTGTTCTTTGTGT
1 GTTAAGTGTTCTTGGTGT
86203266 GTTAAGTGTTCTTGGTGT
1 GTTAAGTGTTCTTGGTGT
86203284 GT
1 GT
86203286 GTGTGTGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.05, G:0.32, T:0.53
Consensus pattern (18 bp):
GTTAAGTGTTCTTGGTGT
Found at i:86205975 original size:27 final size:27
Alignment explanation
Indices: 86205937--86205988 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
86205927 CATATATACG
86205937 TGTTAGAATGCCTAAAAACTTAAAAAT
1 TGTTAGAATGCCTAAAAACTTAAAAAT
86205964 TGTTAGAATGCCTAAAAACTTAAAA
1 TGTTAGAATGCCTAAAAACTTAAAA
86205989 TCATGTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.29
Consensus pattern (27 bp):
TGTTAGAATGCCTAAAAACTTAAAAAT
Found at i:86207709 original size:94 final size:94
Alignment explanation
Indices: 86207574--86207816 Score: 305
Period size: 94 Copynumber: 2.6 Consensus size: 94
86207564 TTGCTGGACC
* * *
86207574 AGGGTTACAGAGCATTACCAGACGAACAAAATAATAAACCATTCAAATCATACATCCAATTGTAA
1 AGGGTTACAGAGCATTACCAGACAAACAAAATAGTAAACCATTCAAATCATACATCCAAATGTAA
** * *
86207639 AATCC-CTAACCTTTATCCGTCGTCGGAACA-
66 AA-CCTCTAACCCGTATACATCG-CGGAA-AT
*
86207669 A-GGTTA-AGTAGCATTACCAGACAAACAGAATAGTAAACCATTCAAATCATACATCCAAATGTA
1 AGGGTTACAG-AGCATTACCAGACAAACAAAATAGTAAACCATTCAAATCATACATCCAAATGTA
* *
86207732 ACACCTCTAACCCGTATACATCGCTGAAAT
65 AAACCTCTAACCCGTATACATCGCGGAAAT
** *
86207762 AGGGTTACAGAGCATTACTGGACAAACATAATAGTAAACCATTCAAATCATACAT
1 AGGGTTACAGAGCATTACCAGACAAACAAAATAGTAAACCATTCAAATCATACAT
86207817 AAATACAAAC
Statistics
Matches: 130, Mismatches: 13, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
92 1 0.01
93 9 0.07
94 117 0.90
95 3 0.02
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.23
Consensus pattern (94 bp):
AGGGTTACAGAGCATTACCAGACAAACAAAATAGTAAACCATTCAAATCATACATCCAAATGTAA
AACCTCTAACCCGTATACATCGCGGAAAT
Found at i:86209088 original size:33 final size:33
Alignment explanation
Indices: 86209064--86209181 Score: 200
Period size: 33 Copynumber: 3.6 Consensus size: 33
86209054 CACTTGAGTC
*
86209064 AATCCATCCATCACACCAATGCTCATAAGAGCT
1 AATCCAACCATCACACCAATGCTCATAAGAGCT
*
86209097 AATCCAACCATCACACCAATGTTCATAAGAGCT
1 AATCCAACCATCACACCAATGCTCATAAGAGCT
*
86209130 AAACCAACCATCACACCAATGCTCATAAGAGCT
1 AATCCAACCATCACACCAATGCTCATAAGAGCT
*
86209163 AATCCAACCAACACACCAA
1 AATCCAACCATCACACCAA
86209182 ATAAAGAGTA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 79 1.00
ACGTcount: A:0.42, C:0.34, G:0.08, T:0.17
Consensus pattern (33 bp):
AATCCAACCATCACACCAATGCTCATAAGAGCT
Found at i:86219916 original size:31 final size:30
Alignment explanation
Indices: 86219873--86219932 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
86219863 TGATATATAC
*
86219873 ACAATATGGTA-TTAAGAATATATATACATAT
1 ACAATATAGTATTTAA-AA-ATATATACATAT
86219904 ACAATATAGTATTTAAAAATATATACATA
1 ACAATATAGTATTTAAAAATATATACATA
86219933 AGATGGTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.41
31 12 0.44
32 4 0.15
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.35
Consensus pattern (30 bp):
ACAATATAGTATTTAAAAATATATACATAT
Found at i:86219944 original size:24 final size:23
Alignment explanation
Indices: 86219917--86220024 Score: 76
Period size: 24 Copynumber: 4.4 Consensus size: 23
86219907 ATATAGTATT
86219917 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
86219941 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
* * *
86219965 TAAGAAATATATATAAT-TAATAATA
1 TAA-AAATATATA-CATGAAAT-GTA
* *
86219990 TTAAAAATATATACATGACATATA
1 -TAAAAATATATACATGAAATGTA
86220014 TAAAACATATA
1 TAAAA-ATATA
86220025 CAATATATAC
Statistics
Matches: 68, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
23 5 0.07
24 33 0.49
25 23 0.34
26 7 0.10
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:86220125 original size:23 final size:23
Alignment explanation
Indices: 86220098--86220193 Score: 106
Period size: 23 Copynumber: 4.2 Consensus size: 23
86220088 ACACACATAT
* *
86220098 ATATATAAATAATAGTATTAGAA
1 ATATATAAATAATAGTATAAAAA
* *
86220121 ATATACATATAATAGTATAAAAA
1 ATATATAAATAATAGTATAAAAA
* * *
86220144 ATATATAACTAATAATAT-TAAA
1 ATATATAAATAATAGTATAAAAA
86220166 ATATATATAATAATA-TATAAAAA
1 ATATATA-AATAATAGTATAAAAA
86220189 ATATA
1 ATATA
86220194 ATATTGAAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
22 13 0.22
23 47 0.78
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (23 bp):
ATATATAAATAATAGTATAAAAA
Found at i:86220194 original size:43 final size:46
Alignment explanation
Indices: 86220098--86220193 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 46
86220088 ACACACATAT
*
86220098 ATATATAAATAATAGTATTAGAAATATACATATAATAGTATAAAAA
1 ATATATAAATAATAATATTAGAAATATACATATAATAGTATAAAAA
* *
86220144 ATATATAACTAATAATATTA-AAATATATATAATAATA-TATAAAAA
1 ATATATAAATAATAATATTAGAAATATACAT-ATAATAGTATAAAAA
86220189 ATATA
1 ATATA
86220194 ATATTGAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
45 22 0.48
46 24 0.52
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (46 bp):
ATATATAAATAATAATATTAGAAATATACATATAATAGTATAAAAA
Found at i:86220421 original size:17 final size:16
Alignment explanation
Indices: 86220395--86220427 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
86220385 CTATATATAA
86220395 ATATATATACATACAT
1 ATATATATACATACAT
86220411 ATATAATATACATACAT
1 ATAT-ATATACATACAT
86220428 TAATATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (16 bp):
ATATATATACATACAT
Done.