Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 259 of 344
Found at i:86220442 original size:3 final size:3
Alignment explanation
Indices: 86220428--86220588 Score: 68
Period size: 3 Copynumber: 53.7 Consensus size: 3
86220418 ATACATACAT
* *
86220428 TAA TAT TAA TAA TAA TAA -AA CTAGA -AA TAA TAA TAA TTAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA TAA
* * * ** * *
86220474 TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG TAA
1 TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
86220519 TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA
* *
86220564 -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
86220589 TGTAAAAAAA
Statistics
Matches: 116, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 13 0.11
3 91 0.78
4 11 0.09
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:86221653 original size:11 final size:11
Alignment explanation
Indices: 86221639--86221678 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
86221629 TAGGTTGGTA
86221639 TTGGGTTGTAT
1 TTGGGTTGTAT
*
86221650 TTGGGTTGTAC
1 TTGGGTTGTAT
*
86221661 TTGGGTTTTAT
1 TTGGGTTGTAT
86221672 TTGGGTT
1 TTGGGTT
86221679 AATTTAGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.07, C:0.03, G:0.35, T:0.55
Consensus pattern (11 bp):
TTGGGTTGTAT
Found at i:86221656 original size:22 final size:22
Alignment explanation
Indices: 86221631--86221678 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
86221621 GTAGTGGTTA
86221631 GGTTGGTA-TTGGGTTGTATTTG
1 GGTT-GTACTTGGGTTGTATTTG
*
86221653 GGTTGTACTTGGGTTTTATTTG
1 GGTTGTACTTGGGTTGTATTTG
86221675 GGTT
1 GGTT
86221679 AATTTAGATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.08, C:0.02, G:0.38, T:0.52
Consensus pattern (22 bp):
GGTTGTACTTGGGTTGTATTTG
Found at i:86222507 original size:28 final size:30
Alignment explanation
Indices: 86222444--86222507 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 30
86222434 GTTACAAATA
* *
86222444 ATTTTTTATACTTTTTAAATAATTTTAATG
1 ATTTTTTATAATTTTAAAATAATTTTAATG
*
86222474 A-TTTTTA-AATTTTAAAATAATTTTTAT-
1 ATTTTTTATAATTTTAAAATAATTTTAATG
86222501 ATTTTTT
1 ATTTTTT
86222508 TTGAAACTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 1 0.03
28 22 0.73
29 6 0.20
30 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (30 bp):
ATTTTTTATAATTTTAAAATAATTTTAATG
Found at i:86235441 original size:32 final size:33
Alignment explanation
Indices: 86235344--86235455 Score: 93
Period size: 33 Copynumber: 3.4 Consensus size: 33
86235334 TGTACATTCC
* * ** *
86235344 TTTCCAACTGGTACACACAAAGTATACATTTCC
1 TTTCCAAGTTGTACACACAAAGTATACATAACA
* * * *
86235377 TTTTCATA-TAGTATACACAAAGTATACCTAACA
1 TTTCCA-AGTTGTACACACAAAGTATACATAACA
* *
86235410 TTTCCAAG-TGTACACACAAATTGTACATAACA
1 TTTCCAAGTTGTACACACAAAGTATACATAACA
*
86235442 TTTTCAAGTTGTAC
1 TTTCCAAGTTGTAC
86235456 CATTTGGGTA
Statistics
Matches: 62, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
32 27 0.44
33 34 0.55
34 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (33 bp):
TTTCCAAGTTGTACACACAAAGTATACATAACA
Found at i:86236676 original size:25 final size:27
Alignment explanation
Indices: 86236635--86236685 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
86236625 AGTCAAACAT
86236635 GTATTTAGGTCAATTTAAC-CCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
* *
86236661 GTATTTCGGT-AATTTATCTCCTAGG
1 GTATTTAGGTCAATTTAACTCCTAGG
86236686 AGTAAAACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.39
Consensus pattern (27 bp):
GTATTTAGGTCAATTTAACTCCTAGGG
Found at i:86238210 original size:26 final size:26
Alignment explanation
Indices: 86238174--86238257 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86238164 CATGAAATTC
86238174 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86238200 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86238226 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
86238252 TTATCA
1 TTATCA
86238258 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86238268 original size:10 final size:10
Alignment explanation
Indices: 86238253--86238319 Score: 55
Period size: 10 Copynumber: 6.2 Consensus size: 10
86238243 CCTAACCTAT
86238253 TATCAATTTG
1 TATCAATTTG
86238263 TATCAATTTG
1 TATCAATTTG
*
86238273 TACCATAAATTATGG
1 T---ATCAATT-T-G
*
86238288 ATATCAA-GTG
1 -TATCAATTTG
86238298 TATCAATTTG
1 TATCAATTTG
86238308 TATCAATTTG
1 TATCAATTTG
86238318 TA
1 TA
86238320 CCATAAATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
9 6 0.13
10 26 0.57
11 1 0.02
13 10 0.22
14 1 0.02
15 1 0.02
16 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.43
Consensus pattern (10 bp):
TATCAATTTG
Found at i:86238317 original size:45 final size:45
Alignment explanation
Indices: 86238253--86238352 Score: 184
Period size: 45 Copynumber: 2.2 Consensus size: 45
86238243 CCTAACCTAT
86238253 TATCAATTTGTATCAATTTGTACCATAAATTATGGATATCAAGTG
1 TATCAATTTGTATCAATTTGTACCATAAATTATGGATATCAAGTG
86238298 TATCAATTTGTATCAATTTGTACCATAAATTATGGATATCAAGTG
1 TATCAATTTGTATCAATTTGTACCATAAATTATGGATATCAAGTG
*
86238343 TA-CATTTTGT
1 TATCAATTTGT
86238353 CTACAACAAC
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 7 0.13
45 47 0.87
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (45 bp):
TATCAATTTGTATCAATTTGTACCATAAATTATGGATATCAAGTG
Found at i:86238344 original size:25 final size:25
Alignment explanation
Indices: 86238271--86238345 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
86238261 TGTATCAATT
86238271 TGTACCATAAATTATGGATATCAAG
1 TGTACCATAAATTATGGATATCAAG
* *
86238296 TGT---ATCAATT-T-G-TATCAATT
1 TGTACCATAAATTATGGATATCAA-G
86238316 TGTACCATAAATTATGGATATCAAG
1 TGTACCATAAATTATGGATATCAAG
86238341 TGTAC
1 TGTAC
86238346 ATTTTGTCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
19 6 0.15
20 4 0.10
21 1 0.03
22 6 0.15
23 6 0.15
24 1 0.03
25 9 0.23
26 6 0.15
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (25 bp):
TGTACCATAAATTATGGATATCAAG
Found at i:86257881 original size:138 final size:138
Alignment explanation
Indices: 86257615--86257886 Score: 363
Period size: 138 Copynumber: 2.0 Consensus size: 138
86257605 GTTTTATTTC
* * * * *
86257615 AAAATTCAATTCATATTGCGACAGGTCAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGACAGGTCAGTTGAGCCTCAGAACACGCTGAGGTATTGTCAATTTC
*** * *
86257680 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
66 TCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTA
86257745 TTTTAAAA
131 TTTTAAAA
* *
86257753 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATT-TCAATTT
1 AAAAATCAACTCATATTGCGACAGGTCAGTTGAGCCTCAGAACACGCTGAGGT-ATTGTCAATTT
*
86257817 CT-GT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG-TCGA
65 CTCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCT-GA
86257879 GGTATTTT
127 GGTATTTT
86257887 CAATTTTCGT
Statistics
Matches: 117, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
136 42 0.36
137 3 0.03
138 69 0.59
139 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (138 bp):
AAAAATCAACTCATATTGCGACAGGTCAGTTGAGCCTCAGAACACGCTGAGGTATTGTCAATTTC
TCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTA
TTTTAAAA
Found at i:86257892 original size:76 final size:74
Alignment explanation
Indices: 86257751--86257892 Score: 214
Period size: 74 Copynumber: 1.9 Consensus size: 74
86257741 GGTATTTTAA
*
86257751 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATT
86257816 TCTGTTGTC
66 TCTGTTGTC
* * *
86257825 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCA-G-AACACGCT-GAGGTAATTTCA
86257889 ATTT
63 ATTT
86257893 TCGTTTTTCA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
74 39 0.64
75 2 0.03
76 20 0.33
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATT
TCTGTTGTC
Found at i:86258027 original size:75 final size:76
Alignment explanation
Indices: 86257918--86258063 Score: 204
Period size: 75 Copynumber: 1.9 Consensus size: 76
86257908 CTGCCTTTCA
* *
86257918 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCTGAGGTAATTTCA
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGCACACGCCGAGGTAATTTCA
86257982 ATTTCTGTTGT
66 ATTTCTGTTGT
** * * * *
86257993 AAAAAAAAATCAACTTGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAG-CACACGCCGAGGTAATTTC
86258058 AATTTC
65 AATTTC
86258064 CGTTTTTCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
75 40 0.66
77 21 0.34
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (76 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGCACACGCCGAGGTAATTTCA
ATTTCTGTTGT
Found at i:86258078 original size:169 final size:168
Alignment explanation
Indices: 86257749--86258465 Score: 1109
Period size: 169 Copynumber: 4.2 Consensus size: 168
86257739 GAGGTATTTT
86257749 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-ACACGCTGAGGTAATTTCAA
* *
86257814 TTTCTGTTGT-CAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCG
65 TTTCTGTTGTAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
86257878 AGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
130 AGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
86257917 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
1 -AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCA
* * *
86257982 ATTTCTGTTGTAAAAAAAAATCAACTTGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACATGCC
64 ATTTCTGTTGTAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
*
86258047 GAGGTATTTTCAATTTCCGTTTTTC-AATTTCTGCCTTTC
129 GAGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
* * ** * * *
86258086 AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTGAGGTAATTTC
** * * * *
86258151 AATTTCTGTCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACATG
63 AATTTCTGT-TGTAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
86258215 CCGAGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
127 CCGAGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
86258257 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAA
* * *
86258322 TTTCTGTTGTAAAAAAAAATCAACTCGTATTGCGAGCGGCAAGTTGAGCCTCAGGTCACACGTCG
65 TTTCTGTTGTAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
86258387 AGGTATTTTCAATTTTCGTTTTTC-AATTTCTGCCTTTC
130 AGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
** *
86258425 AAAAAAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
86258466 TTTAATTTTT
Statistics
Matches: 499, Mismatches: 40, Indels: 19
0.89 0.07 0.03
Matches are distributed among these distances:
168 92 0.18
169 182 0.36
170 171 0.34
171 54 0.11
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (168 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAAT
TTCTGTTGTAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA
GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
Found at i:86258148 original size:93 final size:91
Alignment explanation
Indices: 86257977--86258166 Score: 213
Period size: 93 Copynumber: 2.1 Consensus size: 91
86257967 GCTGAGGTAA
** * *
86257977 TTTCAATTTCTGTTGTAAAAAAAAATCAACTTGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCAC
* * *
86258042 ATGCCGAGGTATTTTCAATTTCCGTT
66 ACGCCGAGCTATTTTCAATTTCCGTC
* * *
86258068 TTTCAATTTCTGCCTT-TCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGC
1 TTTCAATTTCTG--TTGT-AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGG-
* * *
86258131 TCACGCGCTGAGCTATTTTCAATTTCTGTC
62 TCACACGCCGAGCTATTTTCAATTTCCGTC
86258161 TTTCAA
1 TTTCAA
86258167 AAAAATCAAC
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
91 12 0.15
92 3 0.04
93 67 0.82
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (91 bp):
TTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCAC
ACGCCGAGCTATTTTCAATTTCCGTC
Found at i:86258225 original size:77 final size:78
Alignment explanation
Indices: 86258067--86258232 Score: 226
Period size: 77 Copynumber: 2.1 Consensus size: 78
86258057 CAATTTCCGT
* ** *
86258067 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCT
1 TTTTCAATTTCTGCCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGAT
* *
86258132 CACGCGCTGAGCTA
65 CACACGCCGAGCTA
* *
86258146 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATC
* *
86258210 ACATGCCGAGGTA
66 ACACGCCGAGCTA
86258223 TTTTCAATTT
1 TTTTCAATTT
86258233 TCGTTTTTCA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 59 0.77
79 18 0.23
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (78 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATC
ACACGCCGAGCTA
Found at i:86258324 original size:92 final size:90
Alignment explanation
Indices: 86258146--86258324 Score: 272
Period size: 94 Copynumber: 2.0 Consensus size: 90
86258136 CGCTGAGCTA
*
86258146 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
86258211 CATGCCGAGGTATTTTCAATTTTCGT
66 CA-GCCGAGGTAATTTCAATTTTCGT
86258237 TTTTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTTC-AATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G
*
86258302 A-CAC-GCTGAGGTAATTTCAATTT
62 ATCACAGCCGAGGTAATTTCAATTT
86258325 CTGTTGTAAA
Statistics
Matches: 81, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
91 5 0.06
92 30 0.37
94 44 0.54
95 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (90 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
CAGCCGAGGTAATTTCAATTTTCGT
Found at i:86258367 original size:75 final size:76
Alignment explanation
Indices: 86258257--86258401 Score: 213
Period size: 75 Copynumber: 1.9 Consensus size: 76
86258247 TCTGCCTTTC
**
86258257 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACG-CTGAGGTAATTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGGCACACGTC-GAGGTAATTTC
86258320 AATTTCTGTTGT
65 AATTTCTGTTGT
* * *
86258332 AAAAAAAAATCAACTCGTATTGCGAGCGGCAAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGG-CACACGTCGAGGTAATTTC
86258397 AATTT
65 AATTT
86258402 TCGTTTTTCA
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
75 41 0.66
77 20 0.32
78 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (76 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGGCACACGTCGAGGTAATTTCA
ATTTCTGTTGT
Found at i:86258369 original size:339 final size:337
Alignment explanation
Indices: 86257749--86258466 Score: 1213
Period size: 339 Copynumber: 2.1 Consensus size: 337
86257739 GAGGTATTTT
* * * *
86257749 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTAGAACACGCTGAGCTAATTTCAA
* * *
86257814 TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
66 TTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGA
86257879 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAG
131 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAG
*
86257944 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTT
196 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTC
* *
86258009 GTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCAATTTCCGTTTTTCAA
261 GTATTGCGAGCGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
86258074 TTTCTGCCTTTC
326 TTTCTGCCTTTC
* * * *
86258086 AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTAG--AACACGCTGAGCTAATTTC
* * *
86258151 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACATGC
64 AATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGC
86258216 CGAGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC-AAAAAAAAATCAACTCATATTGC
128 CGAGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGC
*
86258280 GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAA
193 GAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAA
* *
86258345 CTCGTATTGCGAGCGGCAAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAATTTTCGTTTTT
258 CTCGTATTGCGAGCGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTT
86258410 CAATTTCTGCCTTTC
323 CAATTTCTGCCTTTC
*
86258425 AAAAAAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTT
1 AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTT
86258467 TTAATTTTTG
Statistics
Matches: 357, Mismatches: 21, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
337 40 0.11
339 227 0.64
340 90 0.25
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (337 bp):
AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTAGAACACGCTGAGCTAATTTCAA
TTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGA
GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTC
GTATTGCGAGCGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
TTTCTGCCTTTC
Found at i:86258670 original size:72 final size:73
Alignment explanation
Indices: 86258553--86258722 Score: 218
Period size: 72 Copynumber: 2.3 Consensus size: 73
86258543 TTTTAAATTG
* ** * * * *
86258553 ACTCATATTGCTAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTTTCAATTTTTGTGTT-T
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGT-TTGT
* **
86258617 TAA-TTTCA
65 CAAGAATCA
86258625 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTC
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTC
86258690 AAGAATCA
66 AAGAATCA
*
86258698 ACTCATATTGCGAGAGGTGGGTTGA
1 ACTCATATTGCGAGAGGTGAGTTGA
86258723 ACCTTTTAAT
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
71 2 0.02
72 56 0.66
73 27 0.32
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (73 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTC
AAGAATCA
Found at i:86259096 original size:30 final size:30
Alignment explanation
Indices: 86259055--86259114 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
86259045 ACTCATATTA
86259055 CGAGAGGTGAGTTGAG-CTTTTTAATTTCTG
1 CGAGAGGTGAGTTGAGTC-TTTTAATTTCTG
*
86259085 CGAGAGTTGAGTTGAGTCTTTTAATTTCTG
1 CGAGAGGTGAGTTGAGTCTTTTAATTTCTG
86259115 TTTTTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.42
Consensus pattern (30 bp):
CGAGAGGTGAGTTGAGTCTTTTAATTTCTG
Found at i:86259863 original size:25 final size:26
Alignment explanation
Indices: 86259820--86259869 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
86259810 CCCTCCCAAA
86259820 AAAAACCTAACCCCCCCCAAAAAAAG
1 AAAAACCTAACCCCCCCCAAAAAAAG
86259846 AAAAACCTAA-CCCCCCCAAAAAAA
1 AAAAACCTAACCCCCCCCAAAAAAA
86259870 CCAAGAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.56, C:0.38, G:0.02, T:0.04
Consensus pattern (26 bp):
AAAAACCTAACCCCCCCCAAAAAAAG
Found at i:86260689 original size:15 final size:13
Alignment explanation
Indices: 86260669--86260758 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 13
86260659 CTAATACGTA
*
86260669 TATATATATGTATTT
1 TATATATAT-TA-TG
86260684 TATATATATTATG
1 TATATATATTATG
86260697 TATATATATTAGTG
1 TATATATATTA-TG
86260711 TATAT-T-TTATG
1 TATATATATTATG
* * *
86260722 TACATAT-GTATA
1 TATATATATTATG
*
86260734 TATATAT-TTTTG
1 TATATATATTATG
*
86260746 TACATATCATTAT
1 TATATAT-ATTAT
86260759 TTTATATTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
11 6 0.10
12 21 0.34
13 13 0.21
14 12 0.20
15 9 0.15
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.54
Consensus pattern (13 bp):
TATATATATTATG
Found at i:86260764 original size:25 final size:25
Alignment explanation
Indices: 86260672--86260766 Score: 86
Period size: 25 Copynumber: 3.7 Consensus size: 25
86260662 ATACGTATAT
*
86260672 ATATATGTATTTTATATATATTATGTAT
1 ATATAT-TATTTTATAT-T-TTATGTAC
* *
86260700 ATATATTAGTGTATATTTTATGTAC
1 ATATATTATTTTATATTTTATGTAC
* *
86260725 ATAT-GTATATATATATTTT-TGTAC
1 ATATATTAT-TTTATATTTTATGTAC
86260749 ATATCATTATTTTATATT
1 ATAT-ATTATTTTATATT
86260767 ATTGTTGTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
24 11 0.20
25 27 0.48
26 4 0.07
27 8 0.14
28 6 0.11
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.56
Consensus pattern (25 bp):
ATATATTATTTTATATTTTATGTAC
Found at i:86260901 original size:19 final size:19
Alignment explanation
Indices: 86260827--86260905 Score: 72
Period size: 19 Copynumber: 4.1 Consensus size: 19
86260817 TTTCTTTTGT
*
86260827 TGTAGATATTATTATTATTA
1 TGTACATATTATTATT-TTA
*
86260847 T-TACATACTT-TTATTATA
1 TGTACATA-TTATTATTTTA
* *
86260865 TGCATATATATATGTATTTTA
1 TGTACATAT-TAT-TATTTTA
86260886 TGTACATATTATTATTTTA
1 TGTACATATTATTATTTTA
86260905 T
1 T
86260906 ATTATTATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
18 4 0.09
19 23 0.49
20 7 0.15
21 13 0.28
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (19 bp):
TGTACATATTATTATTTTA
Found at i:86264225 original size:127 final size:127
Alignment explanation
Indices: 86264063--86264361 Score: 445
Period size: 127 Copynumber: 2.4 Consensus size: 127
86264053 GTAATGATTG
* * * *
86264063 ATGTTTGGGAACTCGAGGAATTGTGCCCTACCGTGCTGGGTTTCGATTTCCCATTTGTTCAAAAT
1 ATGTTTGGAAATTCAAGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCCATTTGTTCAAAAT
*
86264128 AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTTTAAAACAAGACAATGTTCA
66 AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
*** * *
86264190 ATGTTTGGAAATTTGGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAAT
1 ATGTTTGGAAATTCAAGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCCATTTGTTCAAAAT
* * * * *
86264255 AATCGAATATTCCTTTTGAATTTCACTCGTGTTTTCTAAATTCTAAAGCAAGGCAATGTTCA
66 AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
* *
86264317 ATGTTTGGAAATTCAAGGAATCGTGCCCTACCATGATGGGTTTCG
1 ATGTTTGGAAATTCAAGGAATCGTGCCCTACCGTGCTGGGTTTCG
86264362 GTTTTTCGTT
Statistics
Matches: 153, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
127 153 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (127 bp):
ATGTTTGGAAATTCAAGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCCATTTGTTCAAAAT
AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
Found at i:86267317 original size:47 final size:46
Alignment explanation
Indices: 86267234--86267348 Score: 140
Period size: 47 Copynumber: 2.5 Consensus size: 46
86267224 TAGCTCAGCC
* * * * *
86267234 ATGGTCTTACACGTATCACATATCACATTGATGCCATATCCCATAT
1 ATGGTCTTACACGAAGCACATATAACACTGATGCCATATCCCATAA
* *
86267280 ATGGTCTTACACAGAAGCACATATAATACTGATGCCATGTCCCATAA
1 ATGGTCTTACAC-GAAGCACATATAACACTGATGCCATATCCCATAA
*
86267327 ATGGTCTTATACGAAAGCACAT
1 ATGGTCTTACACG-AAGCACAT
86267349 TATCACATCA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
46 13 0.22
47 46 0.78
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (46 bp):
ATGGTCTTACACGAAGCACATATAACACTGATGCCATATCCCATAA
Found at i:86267368 original size:53 final size:50
Alignment explanation
Indices: 86267263--86267409 Score: 142
Period size: 47 Copynumber: 2.9 Consensus size: 50
86267253 ATATCACATT
* * *
86267263 GATGCCATATCCCATATATGGTCTTACAC-AGAAGCACATAT-A-AT-ACT
1 GATGCCATGTCCCATATATGGTCTTATACGA-AAGCACATATCACATCACC
*
86267310 GATGCCATGTCCCATAAATGGTCTTATACGAAAGCACATTATCACATCACACC
1 GATGCCATGTCCCATATATGGTCTTATACGAAAGCACA-TATCACAT--CACC
** **
86267363 GATGCCATAG-CCCAGCTATGGTCTTATACGGGAGCACATATCACATC
1 GATGCCAT-GTCCCATATATGGTCTTATACGAAAGCACATATCACATC
86267410 TTTTTTGTCA
Statistics
Matches: 83, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
47 33 0.40
48 4 0.05
49 1 0.01
50 3 0.04
52 8 0.10
53 33 0.40
54 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
GATGCCATGTCCCATATATGGTCTTATACGAAAGCACATATCACATCACC
Found at i:86267406 original size:47 final size:47
Alignment explanation
Indices: 86267202--86267407 Score: 128
Period size: 47 Copynumber: 4.2 Consensus size: 47
86267192 TGTACATAGT
* * ** * *
86267202 CACATATCACACACCGAAGCCATAGCTCAGCCATGGTCTTACAC-GTAT
1 CACATAT--CACACCGATGCCATAGCCCAGATATGGTCTTACACGGAAG
** * * *
86267250 CACATATCACATTGATGCCATATCCCATATATGGTCTTACACAGAAG
1 CACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAAG
* * * * * * *
86267297 CACATATAATACTGATGCCAT-GTCCCATAAATGGTCTTATACGAAAG
1 CACATATCACACCGATGCCATAG-CCCAGATATGGTCTTACACGGAAG
* * *
86267344 CACATTATCACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAG
1 CAC---AT---ATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAAG
86267397 CACATATCACA
1 CACATATCACA
86267408 TCTTTTTTGT
Statistics
Matches: 123, Mismatches: 26, Indels: 19
0.73 0.15 0.11
Matches are distributed among these distances:
46 27 0.22
47 49 0.40
48 7 0.06
50 4 0.03
53 35 0.28
54 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (47 bp):
CACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAAG
Found at i:86284098 original size:11 final size:11
Alignment explanation
Indices: 86284082--86284107 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
86284072 TACGAGTAAA
86284082 AATATAACAAT
1 AATATAACAAT
86284093 AATATAACAAT
1 AATATAACAAT
86284104 AATA
1 AATA
86284108 ATATAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (11 bp):
AATATAACAAT
Found at i:86284122 original size:16 final size:16
Alignment explanation
Indices: 86284101--86284189 Score: 63
Period size: 16 Copynumber: 5.1 Consensus size: 16
86284091 ATAATATAAC
86284101 AATAATAATATAAAAT
1 AATAATAATATAAAAT
*
86284117 AATAATAATTTGTGAAAAAT
1 AATAATAA--TAT--AAAAT
86284137 AATAAATAATAATACAAAT
1 AAT-AATAAT-ATA-AAAT
*
86284156 AATATATAATAGAATAAT
1 AATA-ATAATATAA-AAT
*
86284174 TAT-ATAATATAAAAT
1 AATAATAATATAAAAT
86284189 A
1 A
86284190 TAAAAATAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
15 3 0.05
16 16 0.28
17 1 0.02
18 11 0.19
19 13 0.22
20 9 0.16
21 5 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (16 bp):
AATAATAATATAAAAT
Found at i:86297086 original size:21 final size:21
Alignment explanation
Indices: 86297045--86297091 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
86297035 TATCAAGTAT
*
86297045 GTAAAAGAATTCATATTTATA
1 GTAAAAGAATTCATATATATA
*
86297066 GTAAAATAATT-ATATAATATA
1 GTAAAAGAATTCATAT-ATATA
86297087 -TAAAA
1 GTAAAA
86297092 ATATAAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.36
Consensus pattern (21 bp):
GTAAAAGAATTCATATATATA
Found at i:86297292 original size:16 final size:16
Alignment explanation
Indices: 86297264--86297296 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
86297254 AAATGATAAT
86297264 AATATATAGATAAAAA
1 AATATATAGATAAAAA
86297280 AATA-ATAGTATAAAAA
1 AATATATAG-ATAAAAA
86297296 A
1 A
86297297 TGACATCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (16 bp):
AATATATAGATAAAAA
Found at i:86297411 original size:11 final size:11
Alignment explanation
Indices: 86297391--86297477 Score: 55
Period size: 11 Copynumber: 8.3 Consensus size: 11
86297381 ATAATACGAG
86297391 TAAA-AATATA
1 TAAATAATATA
86297401 -ACAATAATATA
1 TA-AATAATATA
86297412 TAAATAATA-A
1 TAAATAATATA
86297422 TATAA-AATA-A
1 TA-AATAATATA
* *
86297432 T-AATAATTTG
1 TAAATAATATA
86297442 TGAAA-AATA-A
1 T-AAATAATATA
86297452 TAAATAATAATA
1 TAAATAAT-ATA
*
86297464 CAAATAATATA
1 TAAATAATATA
86297475 TAA
1 TAA
86297478 TAGAATAATT
Statistics
Matches: 60, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
8 2 0.03
9 7 0.12
10 16 0.27
11 24 0.40
12 11 0.18
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (11 bp):
TAAATAATATA
Found at i:86297414 original size:13 final size:12
Alignment explanation
Indices: 86297396--86297437 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
86297386 ACGAGTAAAA
86297396 ATATAACAATAAT
1 ATATAA-AATAAT
86297409 ATAT-AAATAAT
1 ATATAAAATAAT
86297420 AATATAAAATAAT
1 -ATATAAAATAAT
86297433 A-ATAA
1 ATATAA
86297438 TTTGTGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 10 0.37
12 6 0.22
13 11 0.41
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (12 bp):
ATATAAAATAAT
Found at i:86297435 original size:16 final size:16
Alignment explanation
Indices: 86297414--86297502 Score: 63
Period size: 16 Copynumber: 5.1 Consensus size: 16
86297404 ATAATATATA
86297414 AATAATAATATAAAAT
1 AATAATAATATAAAAT
*
86297430 AATAATAATTTGTGAAAAAT
1 AATAATAA--TAT--AAAAT
86297450 AATAAATAATAATACAAAT
1 AAT-AATAAT-ATA-AAAT
*
86297469 AATATATAATAGAATAAT
1 AATA-ATAATATAA-AAT
*
86297487 TAT-ATAATATAAAAT
1 AATAATAATATAAAAT
86297502 A
1 A
86297503 TAAAAATAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
15 3 0.05
16 16 0.28
17 1 0.02
18 11 0.19
19 13 0.22
20 9 0.16
21 5 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (16 bp):
AATAATAATATAAAAT
Found at i:86297437 original size:30 final size:30
Alignment explanation
Indices: 86297398--86297511 Score: 83
Period size: 30 Copynumber: 3.7 Consensus size: 30
86297388 GAGTAAAAAT
*
86297398 ATAACAATAATATATAAATAATAATATAAA
1 ATAATAATAATATATAAATAATAATATAAA
* *
86297428 ATAATAATAATTTGTGAAA-AATAATA-AATA
1 ATAATAATAATATAT-AAATAATAATATAA-A
* *
86297458 ATAATACAAATAATATATAATAGAATAATTATATA
1 ATAAT---AATAATATATAA-ATAATAA-TATAAA
*
86297493 AT-ATAA-AATATAAAAATAA
1 ATAATAATAATATATAAATAA
86297512 GGTAAAAAGA
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
29 5 0.07
30 33 0.49
31 5 0.07
32 2 0.03
33 9 0.13
34 7 0.10
35 5 0.07
36 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (30 bp):
ATAATAATAATATATAAATAATAATATAAA
Found at i:86301174 original size:22 final size:23
Alignment explanation
Indices: 86301122--86301174 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
86301112 AATTCTCTTA
*
86301122 AAATTT-ATTAAATTATAAATTT
1 AAATTTAATAAAATTATAAATTT
* * *
86301144 ATATATAATAAAATTAT-ACTTT
1 AAATTTAATAAAATTATAAATTT
86301166 AAATTTAAT
1 AAATTTAAT
86301175 TTTTTTTAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
AAATTTAATAAAATTATAAATTT
Found at i:86301676 original size:28 final size:26
Alignment explanation
Indices: 86301645--86301704 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
86301635 GTATGTTATT
86301645 TAAATTATATAATAATATATAAAATAAA
1 TAAATTATATAATAATA-ATAAAA-AAA
* * *
86301673 TAAATAATATATTAATAATTAAAAAA
1 TAAATTATATAATAATAATAAAAAAA
86301699 TAAATT
1 TAAATT
86301705 GAACTTAGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.29
27 5 0.18
28 15 0.54
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (26 bp):
TAAATTATATAATAATAATAAAAAAA
Found at i:86307122 original size:48 final size:48
Alignment explanation
Indices: 86306999--86307122 Score: 167
Period size: 48 Copynumber: 2.6 Consensus size: 48
86306989 ACATTATGAG
* * * * *
86306999 AGCTAGTGTAACACATGTCTGGGACATACATCGGCCTCGAGATATATA
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACA
* *
86307047 AACCAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACA
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACA
* *
86307095 AGCTAGTGTAAGACCTATCTAGGACATG
1 AGCTAGTGTAAGACATGTCTAGGACATG
86307123 GCATTAGCTT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (48 bp):
AGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACA
Found at i:86313414 original size:46 final size:46
Alignment explanation
Indices: 86313361--86313628 Score: 335
Period size: 46 Copynumber: 5.8 Consensus size: 46
86313351 TATTTGGGCA
86313361 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
86313407 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
86313453 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGAATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
86313499 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * * *
86313546 TCCGAGCTCGTTGAGTTGAGTCTGACTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
86313592 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86313629 GCGGGTTACA
Statistics
Matches: 192, Mismatches: 23, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 1 0.01
46 152 0.79
47 29 0.15
48 2 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86319026 original size:46 final size:46
Alignment explanation
Indices: 86318973--86319148 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 46
86318963 TATTTGGGCA
86318973 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
86319019 TCCGAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
86319064 CATCC-AAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
86319112 CCCGAGCTCGTTGAGTTGATTCCGAGTTGACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86319149 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
45 1 0.01
46 60 0.56
47 25 0.23
48 1 0.01
50 7 0.07
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86319128 original size:93 final size:93
Alignment explanation
Indices: 86318969--86319139 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86318959 AGGATATTTG
* *
86318969 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
86319034 TTGAGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTTGAGAGATGTAACTA
*
86319062 GGCATCC-AAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGA
1 GGCATCCGAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGA
*
86319126 GTTGATTCCGAGTT
65 GTTGAGTCCGAGTT
86319140 GACTTATGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:86322369 original size:40 final size:40
Alignment explanation
Indices: 86322323--86322413 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
86322313 TCGGTATCCT
*
86322323 ACACTTAGTACCTCA-TATAGCCGAAGCTATTACAATTCGC
1 ACACTTAGTACCT-ATTATAGCCGAAGCTATTACAAATCGC
* *
86322363 ACACTTAGT-GCTATTTATAGCCGAAGCTATTTCAAATCGC
1 ACACTTAGTACCTA-TTATAGCCGAAGCTATTACAAATCGC
86322403 ACACTTAGTAC
1 ACACTTAGTAC
86322414 TGAAAATAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.05
40 41 0.93
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (40 bp):
ACACTTAGTACCTATTATAGCCGAAGCTATTACAAATCGC
Found at i:86323445 original size:13 final size:13
Alignment explanation
Indices: 86323409--86323446 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
86323399 TCCAAACGAT
86323409 AAAATTATCACAC
1 AAAATTATCACAC
86323422 AAAACTT-TCACAC
1 AAAA-TTATCACAC
86323435 AAAATTATCACA
1 AAAATTATCACA
86323447 TATTGTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 19 0.83
14 2 0.09
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAATTATCACAC
Found at i:86340080 original size:11 final size:11
Alignment explanation
Indices: 86340059--86340083 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86340049 TTCATTTTCC
86340059 TTTAATTTTAG
1 TTTAATTTTAG
86340070 TTTAATTTTAG
1 TTTAATTTTAG
86340081 TTT
1 TTT
86340084 TTACAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTAATTTTAG
Found at i:86344978 original size:49 final size:49
Alignment explanation
Indices: 86344902--86345096 Score: 248
Period size: 49 Copynumber: 3.9 Consensus size: 49
86344892 TAGCCGAACC
* *
86344902 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * * * *
86344951 AATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAAT
* * *
86345002 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
86345051 TAT-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
86345097 TCACAATAGT
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 81 0.66
50 2 0.02
51 40 0.33
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:86345080 original size:100 final size:100
Alignment explanation
Indices: 86344907--86345094 Score: 333
Period size: 100 Copynumber: 1.9 Consensus size: 100
86344897 GAACCTATCT
86344907 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
86344972 TACACTTAGTACTACACACGTGATCACAGTTTTCG
66 TACACTTAGTACTACACACGTGATCACAGTTTTCG
* *
86345007 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTAT-TCGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT-GGTACACGTAGTAGC
*
86345071 CTGCACTTAGTACTACACACGTGA
65 CTACACTTAGTACTACACACGTGA
86345095 CCTCACAATA
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
99 1 0.01
100 83 0.99
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:86347608 original size:15 final size:15
Alignment explanation
Indices: 86347558--86347616 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
86347548 AAAACCGAAT
86347558 AAAGAAATCCAAGATA
1 AAAGAAATCCAAGA-A
* *
86347574 GAA-AAA-CCCAGAA
1 AAAGAAATCCAAGAA
86347587 TAAAGAAATCCAAGAA
1 -AAAGAAATCCAAGAA
*
86347603 AAAGAAACCCAAGA
1 AAAGAAATCCAAGA
86347617 TACGATATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
13 1 0.03
14 7 0.20
15 19 0.54
16 8 0.23
ACGTcount: A:0.63, C:0.17, G:0.14, T:0.07
Consensus pattern (15 bp):
AAAGAAATCCAAGAA
Found at i:86347611 original size:30 final size:31
Alignment explanation
Indices: 86347537--86347613 Score: 106
Period size: 30 Copynumber: 2.5 Consensus size: 31
86347527 TTACGGAATA
*
86347537 AAGATAACAAGAAAACC-GAATAAAGAAATCC
1 AAGATAA-AAGAAACCCAGAATAAAGAAATCC
*
86347568 AAGATAGAA-AAACCCAGAATAAAGAAATCC
1 AAGATAAAAGAAACCCAGAATAAAGAAATCC
86347598 AAGA-AAAAGAAACCCA
1 AAGATAAAAGAAACCCA
86347614 AGATACGATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
29 8 0.20
30 27 0.66
31 6 0.15
ACGTcount: A:0.62, C:0.17, G:0.13, T:0.08
Consensus pattern (31 bp):
AAGATAAAAGAAACCCAGAATAAAGAAATCC
Found at i:86350729 original size:51 final size:49
Alignment explanation
Indices: 86350602--86350796 Score: 230
Period size: 49 Copynumber: 3.9 Consensus size: 49
86350592 TAGCCGAACC
* *
86350602 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * * *
86350651 AATCTGGTAC-AAGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCAGGTACGCA-TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAAT
* *
86350702 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
86350751 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
86350797 TCACAATAGT
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
48 1 0.01
49 80 0.66
50 2 0.02
51 38 0.31
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:86350780 original size:100 final size:100
Alignment explanation
Indices: 86350607--86350794 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
86350597 GAACCTATCT
*
86350607 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACAAGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACAAGTAGTAGCC
86350672 TACACTTAGTACTACACACGTGATCACAGTTTTCA
66 TACACTTAGTACTACACACGTGATCACAGTTTTCA
* *
86350707 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACAAGTAGTAGCC
*
86350772 TGCACTTAGTACTACACACGTGA
66 TACACTTAGTACTACACACGTGA
86350795 CCTCACAATA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACAAGTAGTAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:86358574 original size:16 final size:16
Alignment explanation
Indices: 86358549--86358579 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86358539 AAGAAAGAGG
*
86358549 TAAAATAAAAGAAAAA
1 TAAAAAAAAAGAAAAA
86358565 TAAAAAAAAAGAAAA
1 TAAAAAAAAAGAAAA
86358580 GAATGGCAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.10
Consensus pattern (16 bp):
TAAAAAAAAAGAAAAA
Found at i:86359811 original size:7 final size:7
Alignment explanation
Indices: 86359799--86359844 Score: 92
Period size: 7 Copynumber: 6.6 Consensus size: 7
86359789 ATGCCCGTGT
86359799 CACAATA
1 CACAATA
86359806 CACAATA
1 CACAATA
86359813 CACAATA
1 CACAATA
86359820 CACAATA
1 CACAATA
86359827 CACAATA
1 CACAATA
86359834 CACAATA
1 CACAATA
86359841 CACA
1 CACA
86359845 TAAATAACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.13
Consensus pattern (7 bp):
CACAATA
Found at i:86363171 original size:40 final size:41
Alignment explanation
Indices: 86363077--86363301 Score: 158
Period size: 40 Copynumber: 5.6 Consensus size: 41
86363067 TATTCAAATG
* * *
86363077 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGGTGACT
* * *
86363118 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGGTGACT
* * * * * *
86363158 ATATCCGGCCTAAGACCCAAAGGCATTTGTGCTA-GCGATT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGGTGACT
* * * * *
86363198 ATATCCGGGCTAA-AACAAGAAGGCATTTGTGCTA-GCGACT
1 ATATCCGGACTAAGATC-CGAAGGCATTTGTGCGAGGTGACT
* * * *
86363238 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTA-GTGACC
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGGTGACT
* * *
86363278 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGACTAAGATCCGAAGGC
86363302 CTTGTGCAAG
Statistics
Matches: 151, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
39 3 0.02
40 116 0.77
41 31 0.21
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (41 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGGTGACT
Found at i:86363251 original size:80 final size:80
Alignment explanation
Indices: 86363077--86363337 Score: 251
Period size: 80 Copynumber: 3.3 Consensus size: 80
86363067 TATTCAAATG
* * * * *
86363077 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGAACAGAAGGC
*
86363142 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * *
86363158 ATATCCGGCCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAA-AACAAGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAAC-AGAAGGC
* *
86363222 ATTTGTGCTAG-CGACT
65 ATTCGTGCGAGTCG-CT
* * * * * *
86363238 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACAGAAGGCA
* * *
86363303 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
* *
86363317 ATA-CCCGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
86363338 ATTACTTGAG
Statistics
Matches: 147, Mismatches: 29, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
78 16 0.11
79 13 0.09
80 86 0.59
81 32 0.22
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACAGAAGGCA
TTCGTGCGAGTCGCT
Found at i:86363291 original size:120 final size:121
Alignment explanation
Indices: 86363077--86363301 Score: 276
Period size: 120 Copynumber: 1.9 Consensus size: 121
86363067 TATTCAAATG
** ** * *
86363077 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACAAGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
86363142 ATTCGTGCGAGTTGCTATATCCGGCCTAAGACCCAAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGCCTAAGACCCAAAGGCATTTGTGCTAGCGATT
* *
86363198 ATATCCGGGCTAAAACAAGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACAAGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * * *
86363261 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGCCTAAGACCCAAAGGC
86363302 CTTGTGCAAG
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
119 3 0.03
120 55 0.63
121 29 0.33
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
ATATCCGGGCTAAAACAAGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGCCTAAGACCCAAAGGCATTTGTGCTAGCGATT
Found at i:86370465 original size:40 final size:41
Alignment explanation
Indices: 86370371--86370595 Score: 149
Period size: 40 Copynumber: 5.6 Consensus size: 41
86370361 TATTCAAATG
* * *
86370371 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGGTGACT
* * *
86370412 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGGTGACT
* * * * *
86370452 ATATCCGGCCTAAGACCCGAAGGCATTTGTGCTA-GCGATT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGGTGACT
* * * * *
86370492 ATATCCGGGCTAA-AACAAGAAGGCATTTGTGCTA-GCGACT
1 ATATCCGGACTAAGATC-CGAAGGCATTTGTGCGAGGTGACT
* * * * *
86370532 ATATCTGGGCTAAG-TCCCGAAGGCATTTATGCTA-GTGACC
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGGTGACT
* * * *
86370572 ACACCCGGGCTAAGACCCGAAGGC
1 ATATCCGGACTAAGATCCGAAGGC
86370596 CTTGTGCAAG
Statistics
Matches: 150, Mismatches: 28, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
39 3 0.02
40 115 0.77
41 31 0.21
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (41 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGGTGACT
Found at i:86370580 original size:80 final size:80
Alignment explanation
Indices: 86370371--86370631 Score: 242
Period size: 80 Copynumber: 3.3 Consensus size: 80
86370361 TATTCAAATG
* * * *
86370371 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATAACCGGGCTAAGAACAGAAGGC
*
86370436 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * *
86370452 ATATCCGGCCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAA-AACAAGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCGGGCTAAGAAC-AGAAGGC
* *
86370516 ATTTGTGCTAG-CGACT
65 ATTCGTGCGAGTCG-CT
* * * * * * * *
86370532 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACACCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCGGGCTAAGAACAGAAGGCA
* * *
86370597 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
* *
86370611 ATA-CCCGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
86370632 ACTACTTGAG
Statistics
Matches: 146, Mismatches: 30, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
78 15 0.10
79 13 0.09
80 85 0.58
81 33 0.23
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCGGGCTAAGAACAGAAGGCA
TTCGTGCGAGTCGCT
Found at i:86382292 original size:40 final size:39
Alignment explanation
Indices: 86382255--86382432 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 39
86382245 ATATCCGGAC
86382255 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
86382295 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
86382335 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
86382375 TAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
86382414 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
86382433 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.27
40 85 0.70
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:86382345 original size:80 final size:79
Alignment explanation
Indices: 86382261--86382432 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 79
86382251 GGACTAAGAT
*
86382261 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
86382325 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * *
86382341 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
86382406 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
86382420 CCGAAGGCATTTG
1 CCGAAGGCATTTG
86382433 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 38 0.47
80 39 0.49
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:86382450 original size:79 final size:80
Alignment explanation
Indices: 86382288--86382465 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
86382278 AGATACAAAT
* * * *
86382288 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
86382353 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
86382368 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
86382432 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
86382447 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
86382466 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:86388046 original size:13 final size:12
Alignment explanation
Indices: 86388017--86388046 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
86388007 TCCTGAGTTG
86388017 ATTTTTGTAGGA
1 ATTTTTGTAGGA
*
86388029 ATTTTTGTAGGC
1 ATTTTTGTAGGA
86388041 ATTTTT
1 ATTTTT
86388047 AACATAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (12 bp):
ATTTTTGTAGGA
Found at i:86388628 original size:19 final size:20
Alignment explanation
Indices: 86388604--86388649 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
86388594 CATCCAAACA
86388604 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
86388623 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
86388643 CCAGAAA
1 CCAGAAA
86388650 TCATTTTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:86388670 original size:14 final size:14
Alignment explanation
Indices: 86388633--86388663 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
86388623 CCAGAAAAGT
86388633 AAATCATTTTCCAG
1 AAATCATTTTCCAG
86388647 AAATCATTTTCCAG
1 AAATCATTTTCCAG
86388661 AAA
1 AAA
86388664 ATATTTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:86391695 original size:16 final size:16
Alignment explanation
Indices: 86391653--86391695 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
86391643 TAATAAGAGT
86391653 TATTTTGTAGGAATTA
1 TATTTTGTAGGAATTA
86391669 TAATTTTGTAGGAATTA
1 T-ATTTTGTAGGAATTA
*
86391686 TATTTGGTAG
1 TATTTTGTAG
86391696 TTTCGACGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.49
Consensus pattern (16 bp):
TATTTTGTAGGAATTA
Found at i:86400273 original size:4 final size:4
Alignment explanation
Indices: 86400264--86400298 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
86400254 TATTTTTATT
86400264 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
86400299 TATTAAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:86403731 original size:40 final size:40
Alignment explanation
Indices: 86403549--86403771 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
86403539 TCCTCGTTCA
* * * * *
86403549 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
86403588 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
86403628 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
86403668 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
86403708 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
86403748 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86403772 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:86403780 original size:41 final size:41
Alignment explanation
Indices: 86403703--86403780 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
86403693 TTAGTATCTC
* * *
86403703 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
86403744 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
86403781 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:86411206 original size:40 final size:40
Alignment explanation
Indices: 86411024--86411246 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
86411014 TCCTCGTTCA
* * * * *
86411024 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
86411063 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
86411103 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
86411143 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
86411183 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
86411223 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86411247 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:86411255 original size:41 final size:41
Alignment explanation
Indices: 86411178--86411255 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
86411168 TTAGTATCTC
* * *
86411178 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
86411219 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
86411256 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:86417681 original size:41 final size:41
Alignment explanation
Indices: 86417624--86417708 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
86417614 AATGCCCAAA
86417624 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
1 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
*
86417665 CCACAAAATAGAAAAGTGAGTACTCACAGTCCTATGACATG
1 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
86417706 CCA
1 CCA
86417709 ACTATATCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.42, C:0.24, G:0.15, T:0.19
Consensus pattern (41 bp):
CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
Found at i:86428665 original size:18 final size:18
Alignment explanation
Indices: 86428642--86428678 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86428632 TTAAATTGTT
86428642 TTTTTATTATTATATGTG
1 TTTTTATTATTATATGTG
86428660 TTTTTATTATTATATGTG
1 TTTTTATTATTATATGTG
86428678 T
1 T
86428679 ATGGAAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.68
Consensus pattern (18 bp):
TTTTTATTATTATATGTG
Found at i:86431765 original size:30 final size:30
Alignment explanation
Indices: 86431729--86431788 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
86431719 TCATGAATGG
86431729 AGCTTAACTCGACATTCCCTTATCTCCTCA
1 AGCTTAACTCGACATTCCCTTATCTCCTCA
86431759 AGCTTAACTCGACATTCCCTTATCTCCTCA
1 AGCTTAACTCGACATTCCCTTATCTCCTCA
86431789 TTCTGTCCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.37, G:0.07, T:0.33
Consensus pattern (30 bp):
AGCTTAACTCGACATTCCCTTATCTCCTCA
Found at i:86433390 original size:42 final size:43
Alignment explanation
Indices: 86433321--86433403 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 43
86433311 TTTTACATGT
*
86433321 AATCAAATACCGATGCCACTGTCCCAGACAGGGTCTTACACGA
1 AATCAAATACCGATGCCAATGTCCCAGACAGGGTCTTACACGA
*
86433364 AATCAAATA-CGATGCCAATGTCCCAGACATGGTCTTACAC
1 AATCAAATACCGATGCCAATGTCCCAGACAGGGTCTTACAC
86433404 ATAAATCATA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 29 0.76
43 9 0.24
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (43 bp):
AATCAAATACCGATGCCAATGTCCCAGACAGGGTCTTACACGA
Found at i:86433410 original size:43 final size:42
Alignment explanation
Indices: 86433290--86433446 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
86433280 AGCTCGTACA
* * * * *
86433290 ATGCTAATGTTCCAGACATGATTTTACA-TGTAATCAAATACCG
1 ATGCCAATGTCCCAGACATGGTCTTACACT-AAATCAAATA-CG
* * *
86433333 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACTAAATCAAATACG
*
86433375 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCATAAGT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-TAAATCA-AA-TACG
* ** *
86433419 ATACCAATGTCGTAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
86433447 TGATAACACA
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 29 0.31
43 37 0.39
44 27 0.29
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACTAAATCAAATACG
Found at i:86437689 original size:21 final size:22
Alignment explanation
Indices: 86437645--86437690 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
86437635 GGTCTCAGTG
* *
86437645 TTCACTTTGGTACATGAGTTTT
1 TTCAATTTGATACATGAGTTTT
* *
86437667 TTCAATTTGATACTTGATTTTT
1 TTCAATTTGATACATGAGTTTT
86437689 TT
1 TT
86437691 TGTCATGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.11, G:0.13, T:0.57
Consensus pattern (22 bp):
TTCAATTTGATACATGAGTTTT
Found at i:86447260 original size:10 final size:10
Alignment explanation
Indices: 86447233--86447268 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
86447223 AATGATAACA
86447233 AAACAACAAC
1 AAACAACAAC
*
86447243 ATAACAACAAT
1 A-AACAACAAC
86447254 AAACAACAAC
1 AAACAACAAC
86447264 AAACA
1 AAACA
86447269 GTAGTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (10 bp):
AAACAACAAC
Found at i:86464468 original size:30 final size:30
Alignment explanation
Indices: 86464434--86464499 Score: 87
Period size: 31 Copynumber: 2.2 Consensus size: 30
86464424 CAAAGTTATA
* * *
86464434 ATTTATTCATTGAATTATTTAAAAATTTTT
1 ATTTAGTCACTGAATTACTTAAAAATTTTT
*
86464464 ATTTAAGTCACTGAATTACTTAAAAGTTTTT
1 ATTT-AGTCACTGAATTACTTAAAAATTTTT
86464495 ATTTA
1 ATTTA
86464500 AGTCCTTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 5 0.16
31 26 0.84
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (30 bp):
ATTTAGTCACTGAATTACTTAAAAATTTTT
Found at i:86464479 original size:31 final size:31
Alignment explanation
Indices: 86464444--86464503 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
86464434 ATTTATTCAT
*
86464444 TGAATTATTTAAAAATTTTTATTTAAGTCAC
1 TGAATTACTTAAAAATTTTTATTTAAGTCAC
*
86464475 TGAATTACTTAAAAGTTTTTATTTAAGTC
1 TGAATTACTTAAAAATTTTTATTTAAGTC
86464504 CTTAGTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.48
Consensus pattern (31 bp):
TGAATTACTTAAAAATTTTTATTTAAGTCAC
Found at i:86466038 original size:16 final size:17
Alignment explanation
Indices: 86466012--86466048 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
86466002 TTTTTTTATT
86466012 TTTTGGATTTAAGGTTA
1 TTTTGGATTTAAGGTTA
*
86466029 TTTT-GATTTAGGGTTA
1 TTTTGGATTTAAGGTTA
86466045 TTTT
1 TTTT
86466049 AGGTTATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.19, C:0.00, G:0.22, T:0.59
Consensus pattern (17 bp):
TTTTGGATTTAAGGTTA
Found at i:86466098 original size:28 final size:27
Alignment explanation
Indices: 86466018--86466099 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 27
86466008 TATTTTTTGG
* * *
86466018 ATTTAAGGTTATTTTGATTTAGG-GTTA
1 ATTT-AGGTTATTTCGATTTTGGTTTTA
* **
86466045 TTTTAGGTTATTTCGATTTTAATTTTA
1 ATTTAGGTTATTTCGATTTTGGTTTTA
86466072 ATTTAGGGTTATTTCGATTTTGGTTTTA
1 ATTTA-GGTTATTTCGATTTTGGTTTTA
86466100 TTTGTTATTA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
26 14 0.32
27 10 0.23
28 20 0.45
ACGTcount: A:0.22, C:0.02, G:0.18, T:0.57
Consensus pattern (27 bp):
ATTTAGGTTATTTCGATTTTGGTTTTA
Found at i:86466387 original size:62 final size:61
Alignment explanation
Indices: 86466287--86466419 Score: 212
Period size: 62 Copynumber: 2.2 Consensus size: 61
86466277 TTATTGTCTA
* *
86466287 TTATTGTCTGCCATGTGCATGAAAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTATTGG
1 TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTA-TTTTCTATTGG
* *
86466349 TTATTGTCTGCCATGTGCATGACAAAAATGGTTATGTTTGTATTAATTTATTTTCTATTGG
1 TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTATTTTCTATTGG
*
86466410 TTATTATCTG
1 TTATTGTCTG
86466420 ACAGAAATGG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
61 19 0.29
62 47 0.71
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (61 bp):
TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTATTTTCTATTGG
Found at i:86468259 original size:17 final size:17
Alignment explanation
Indices: 86468227--86468258 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
86468217 TTAATATGCA
86468227 TGTAGTGACTATTTTTG
1 TGTAGTGACTATTTTTG
86468244 TGTA-TGACTATTTTT
1 TGTAGTGACTATTTTT
86468259 TAATATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (17 bp):
TGTAGTGACTATTTTTG
Found at i:86468286 original size:67 final size:67
Alignment explanation
Indices: 86468213--86468503 Score: 438
Period size: 67 Copynumber: 4.3 Consensus size: 67
86468203 TTAGTGAGTG
* * * ** * *
86468213 TTTTTTAATATGCATGTAGTGACTATTTTTGTGTATGACTATTTTTTAATATACATGTTGTTGAC
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
86468278 TA
66 TA
* * *
86468280 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATGACTGTTTTTTAATATACATGCTATTGAC
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
86468345 TA
66 TA
86468347 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTTAATATACATGTTGTTGA
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTG-TTTTTTAATATACATGTTGTTGA
86468412 CTA
65 CTA
*
86468415 TTTTTTAATAATATGCATGCAGTGATTGTTGGTGTGTATAAATGTTTATTTAATATACATGTTGT
1 -TTTTT--TAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTT-TTTAATATACATGTTGT
86468480 TGACTA
62 TGACTA
86468486 TTTTTTAATATGCATGCA
1 TTTTTTAATATGCATGCA
86468504 ATGAGTATTT
Statistics
Matches: 207, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
67 99 0.48
68 37 0.18
69 5 0.02
70 8 0.04
71 58 0.28
ACGTcount: A:0.25, C:0.08, G:0.18, T:0.49
Consensus pattern (67 bp):
TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
TA
Found at i:86475921 original size:12 final size:12
Alignment explanation
Indices: 86475906--86475937 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
86475896 GCAAAAGGAG
86475906 ATGCAAGAACAA
1 ATGCAAGAACAA
*
86475918 ATGCAAGAACAG
1 ATGCAAGAACAA
86475930 ATGCAAGA
1 ATGCAAGA
86475938 GAAAATGGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.22, T:0.09
Consensus pattern (12 bp):
ATGCAAGAACAA
Found at i:86475951 original size:26 final size:24
Alignment explanation
Indices: 86475889--86475937 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
86475879 GAAAGGTTGA
*
86475889 AACAAATGCAA-AAGGAGATGCAAG
1 AACAAATGCAAGAA-CAGATGCAAG
86475913 AACAAATGCAAGAACAGATGCAAG
1 AACAAATGCAAGAACAGATGCAAG
86475937 A
1 A
86475938 GAAAATGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.55, C:0.14, G:0.22, T:0.08
Consensus pattern (24 bp):
AACAAATGCAAGAACAGATGCAAG
Found at i:86484528 original size:134 final size:135
Alignment explanation
Indices: 86484132--86484537 Score: 478
Period size: 134 Copynumber: 3.0 Consensus size: 135
86484122 CTCCATGAGG
* * * * * *
86484132 TAGCAATGGAGCAGATCGAAGATGGTGAATCTTATCTTCTAGAGGTAGTAGGGGAGCAGATTTTA
1 TAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTCGAGGTAGCAAGGGAGCAGATTTTA
* * *
86484197 GCTACTAGCCTTATCTCCCTAAGGTAGCAAGGGAGTAGACTGAAGATTGTAGATCTTGTC-TCAT
66 GCCACTAGCCTTATCTCCCTAAGGTAGCAAGGGAGCAGACTGAAGATTGTAGATCTTGTCTTCTT
86484261 CGAGA
131 CGAGA
* ** * * ** *
86484266 AAATAGTGGAGTAAATCGAAAGCGGCGAATCTTATCTTCTCGAGGTATCAAGGGAGCAGATTTTA
1 TAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTCGAGGTAGCAAGGGAGCAGATTTTA
* * * *
86484331 GCCACTAGCCTTATCTCCCCAAAGTAGCAAGGGAGCAGATTGAAGATTGTAGATTTTGT-TTCTT
66 GCCACTAGCCTTATCTCCCTAAGGTAGCAAGGGAGCAGACTGAAGATTGTAGATCTTGTCTTCTT
86484395 CGAGA
131 CGAGA
* * * *
86484400 TAGCAGTGGGGCAGATAGAAAATGGCGAATCTTATCTTCTCGGGGCAGCAAGGGAGCAGATTTTA
1 TAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTCGAGGTAGCAAGGGAGCAGATTTTA
* * * * * * * *
86484465 GCCACCAGCCTTATCTCTCTGAGGTAGCAAAGGAGCAGGCTAAAGATCGTAG-TCTTATCTTCTT
66 GCCACTAGCCTTATCTCCCTAAGGTAGCAAGGGAGCAGACTGAAGATTGTAGATCTTGTCTTCTT
*
86484529 -GAGG
131 CGAGA
86484533 TAGCA
1 TAGCA
86484538 AGGGAGTAGA
Statistics
Matches: 224, Mismatches: 46, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
133 12 0.05
134 212 0.95
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (135 bp):
TAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTCGAGGTAGCAAGGGAGCAGATTTTA
GCCACTAGCCTTATCTCCCTAAGGTAGCAAGGGAGCAGACTGAAGATTGTAGATCTTGTCTTCTT
CGAGA
Found at i:86484555 original size:44 final size:46
Alignment explanation
Indices: 86484474--86484569 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 46
86484464 AGCCACCAGC
* *
86484474 CTTATC-TCTCTGAGGTAGCAAAGGAGCAGGCTAAAGATCGTAG-T
1 CTTATCTTCTCTGAGGTAGCAAAGGAGCAGACTAAAGATCGGAGAT
* * * * *
86484518 CTTATCTTCT-TGAGGTAGCAAGGGAGTAGATTGAAGATTGGAGAT
1 CTTATCTTCTCTGAGGTAGCAAAGGAGCAGACTAAAGATCGGAGAT
86484563 CTTATCT
1 CTTATCT
86484570 CCCTAGGTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
44 32 0.74
45 11 0.26
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAAGGAGCAGACTAAAGATCGGAGAT
Found at i:86529809 original size:13 final size:13
Alignment explanation
Indices: 86529791--86529815 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86529781 TGTGGGTGAA
86529791 CACGGCCGTGTCG
1 CACGGCCGTGTCG
86529804 CACGGCCGTGTC
1 CACGGCCGTGTC
86529816 TGTCTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:86538381 original size:29 final size:30
Alignment explanation
Indices: 86538334--86538401 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
86538324 TGGCCCAAGA
* * * *
86538334 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TAAAAAGTTGAAGGACTAATAGT
86538364 GTAAATATAAAAAGTTGAAGGACTAATAGT
1 GTAAATATAAAAAGTTGAAGGACTAATAGT
*
86538394 GCAAATAT
1 GTAAATAT
86538402 TTTAAGGGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATAAAAAGTTGAAGGACTAATAGT
Found at i:86538662 original size:29 final size:31
Alignment explanation
Indices: 86538614--86538677 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
86538604 TTTATAGTTA
*
86538614 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
86538645 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
86538674 TTTA
1 TTTA
86538678 TTTAATCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:86538666 original size:8 final size:8
Alignment explanation
Indices: 86538655--86538679 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
86538645 TTTAATAAGA
86538655 TATTTTAT
1 TATTTTAT
86538663 TATTTTAT
1 TATTTTAT
86538671 TATTTTAT
1 TATTTTAT
86538679 T
1 T
86538680 TAATCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:86538796 original size:12 final size:12
Alignment explanation
Indices: 86538781--86538805 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86538771 AGAGAGAAAG
86538781 AAAGAAAGTTTT
1 AAAGAAAGTTTT
86538793 AAAGAAAGTTTT
1 AAAGAAAGTTTT
86538805 A
1 A
86538806 CTTTCTTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
AAAGAAAGTTTT
Found at i:86539926 original size:46 final size:47
Alignment explanation
Indices: 86539812--86539930 Score: 168
Period size: 47 Copynumber: 2.6 Consensus size: 47
86539802 ACGAGACATG
* * *
86539812 AAATGAATAAGACCATGGTTGAAAGATACCACGGCAACATGACGGGG
1 AAATGAATAAGACCATGGTTGAAAGATACCACGGAAACATGACGCGA
* *
86539859 AAATGAATAAGACCATGGTTGAAAGATACCATGGAAACCTGAC-CGA
1 AAATGAATAAGACCATGGTTGAAAGATACCACGGAAACATGACGCGA
* *
86539905 AAATGAGTAAGACCATAGTTGAAAGA
1 AAATGAATAAGACCATGGTTGAAAGA
86539931 CACTATGGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 25 0.38
47 40 0.62
ACGTcount: A:0.44, C:0.15, G:0.24, T:0.17
Consensus pattern (47 bp):
AAATGAATAAGACCATGGTTGAAAGATACCACGGAAACATGACGCGA
Found at i:86542427 original size:29 final size:30
Alignment explanation
Indices: 86542380--86542448 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
86542370 TGGCCCAAGA
* * *
86542380 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
86542410 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
86542440 GCAAATATC
1 GTAAATATC
86542449 TTAAGGGTGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:86542706 original size:29 final size:31
Alignment explanation
Indices: 86542658--86542721 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
86542648 TTTATAGTTA
*
86542658 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
86542689 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
86542718 TTTA
1 TTTA
86542722 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:86542710 original size:8 final size:8
Alignment explanation
Indices: 86542699--86542723 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
86542689 TTTAATAAGA
86542699 TATTTTAT
1 TATTTTAT
86542707 TATTTTAT
1 TATTTTAT
86542715 TATTTTAT
1 TATTTTAT
86542723 T
1 T
86542724 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:86545860 original size:30 final size:30
Alignment explanation
Indices: 86545826--86545900 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
86545816 CACGGGTAAA
* *
86545826 CCACATGCCCGTGTGAGACACACCGGTAGG
1 CCACACGCCCGTGTGAGACACACCGGCAGG
*
86545856 CCACACGCCCGTGTGAGACACACGGGCAGG
1 CCACACGCCCGTGTGAGACACACCGGCAGG
*
86545886 CCACGCGCCCGTGTG
1 CCACACGCCCGTGTG
86545901 GGATGGTCGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.20, C:0.37, G:0.32, T:0.11
Consensus pattern (30 bp):
CCACACGCCCGTGTGAGACACACCGGCAGG
Found at i:86590916 original size:26 final size:26
Alignment explanation
Indices: 86590887--86590939 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
86590877 TCAAACATGC
*
86590887 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* *
86590913 ATTTCGATAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
86590939 A
1 A
86590940 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:86592464 original size:26 final size:26
Alignment explanation
Indices: 86592428--86592485 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
86592418 CATGAAATTC
86592428 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86592454 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86592480 TTATCA
1 TTATCA
86592486 ATTTGTATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.38, C:0.26, G:0.03, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86594719 original size:26 final size:26
Alignment explanation
Indices: 86594682--86594748 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
86594672 TATTCTGACC
* *
86594682 CACAGCTTGTGTGAGCAGGCTCATTT
1 CACAGCTCGTGTGAGCAGACTCATTT
86594708 CACAGCTCGTGTGAGCAGACTCATTT
1 CACAGCTCGTGTGAGCAGACTCATTT
*
86594734 CATAGCTCGTGTGAG
1 CACAGCTCGTGTGAG
86594749 TAACGATGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGACTCATTT
Found at i:86598692 original size:15 final size:15
Alignment explanation
Indices: 86598673--86598712 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
86598663 ATGAGCCTTC
*
86598673 AAAAATAAATAGAAAT
1 AAAAATAAAGA-AAAT
*
86598689 AAAAGTAAAGAAAAT
1 AAAAATAAAGAAAAT
86598704 AAAAATAAA
1 AAAAATAAA
86598713 ATGAGTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (15 bp):
AAAAATAAAGAAAAT
Found at i:86608048 original size:46 final size:47
Alignment explanation
Indices: 86607973--86608154 Score: 239
Period size: 46 Copynumber: 4.0 Consensus size: 47
86607963 TTATCTTCAA
* * * *
86607973 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCGATTTCATGT
86608019 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-T-GCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCG-ATTTCATGT
* * *
86608065 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACAC-ATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCGATTTCATGT
* *
86608111 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC-ATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCGATTTCAT
86608155 TTCAGAGAGC
Statistics
Matches: 124, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
44 1 0.01
45 5 0.04
46 118 0.95
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCGATTTCATGT
Found at i:86608135 original size:92 final size:92
Alignment explanation
Indices: 86607978--86608154 Score: 266
Period size: 92 Copynumber: 1.9 Consensus size: 92
86607968 TTCAACATGA
* * * * *
86607978 TGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACGATTTCTATCAGGTTGCCATGGTATCTTTCAAC
**
86608043 CATGGTCTTATGCATTTCATGTCACGT
66 CATGGTCTTACACATTTCATGTCACGT
*
86608070 TGCCATGGTATCTTTCAACCATGGTCTTACAC-ATTTCATATCAGGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAACCATGGTCTTACACGATTTC-TATCAGGTTGCCATGGTATCTTTCAA
86608134 CCATGGTCTTACACATTTCAT
65 CCATGGTCTTACACATTTCAT
86608155 TTCAGAGAGC
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
91 4 0.05
92 72 0.95
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACGATTTCTATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATGTCACGT
Found at i:86608577 original size:23 final size:23
Alignment explanation
Indices: 86608545--86608656 Score: 102
Period size: 23 Copynumber: 4.8 Consensus size: 23
86608535 CAAAGAACCA
*
86608545 TATCGTGAAGCTCACGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* *
86608568 TATCGGGAAGCTC-CGGATAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
86608590 ATATATCGGGAAGTTCAAG-CGAGCAC
1 ---TATCGGGAAGCTCACGAAGAGC-C
* *
86608616 TATCGGGAGGCTCACAAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
86608639 TATCGGGAAGCTCACGAA
1 TATCGGGAAGCTCACGAA
86608657 TAGCTATATT
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
22 7 0.10
23 41 0.59
24 4 0.06
25 15 0.22
26 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.29, T:0.17
Consensus pattern (23 bp):
TATCGGGAAGCTCACGAAGAGCC
Found at i:86608590 original size:71 final size:72
Alignment explanation
Indices: 86608515--86608660 Score: 163
Period size: 71 Copynumber: 2.0 Consensus size: 72
86608505 AACTCAATAG
* * *
86608515 AGCCA-AAATCAGGTAGTTCACAAAGAACCA-TATCGTGAAGCTCACGAAGAGCCTATCGGGAAG
1 AGCCATAAATCAGGAAGTTCA-AAAG-ACCACTATCGGGAAGCTCACAAAGAGCCTATCGGGAAG
*
86608578 CTC-CGGAT
64 CTCACGAAT
* * ** * *
86608586 AGCCATATATCGGGAAGTTCAAGCGAGCACTATCGGGAGGCTCACAAAGAGCCTATCGGGAAGCT
1 AGCCATAAATCAGGAAGTTCAAAAGACCACTATCGGGAAGCTCACAAAGAGCCTATCGGGAAGCT
86608651 CACGAAT
66 CACGAAT
86608658 AGC
1 AGC
86608661 TATATTTCGG
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
70 3 0.05
71 40 0.65
72 19 0.31
ACGTcount: A:0.34, C:0.24, G:0.26, T:0.16
Consensus pattern (72 bp):
AGCCATAAATCAGGAAGTTCAAAAGACCACTATCGGGAAGCTCACAAAGAGCCTATCGGGAAGCT
CACGAAT
Found at i:86610252 original size:18 final size:18
Alignment explanation
Indices: 86610204--86610252 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
86610194 ATAATATAAT
86610204 TATTTAATTAATAAATATC
1 TATTTAA-TAATAAATATC
*
86610223 TTTTATAAAATAATAAATATC
1 TATT-T--AATAATAAATATC
86610244 TATTTAATA
1 TATTTAATA
86610253 TCTAATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 2 0.08
21 14 0.56
22 2 0.08
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTTAATAATAAATATC
Found at i:86610419 original size:26 final size:24
Alignment explanation
Indices: 86610361--86610419 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 24
86610351 ATATCTTATA
86610361 ATATAA-TTATAATAAATTAATTT
1 ATATAATTTATAATAAATTAATTT
*
86610384 AATATCATTTATTAATAAATATATATTT
1 -ATATAATTTA-TAATAAAT-TA-ATTT
86610412 -TATAATTT
1 ATATAATTT
86610420 GAAATCTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 5 0.17
25 3 0.10
26 15 0.52
27 2 0.07
28 4 0.14
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
ATATAATTTATAATAAATTAATTT
Found at i:86611438 original size:59 final size:59
Alignment explanation
Indices: 86611346--86611468 Score: 228
Period size: 59 Copynumber: 2.1 Consensus size: 59
86611336 GGCATATATG
86611346 TATTAGAATATAAGATTTTATTTAGGTTATATATAAATATTATATATAATTATTAGAAT
1 TATTAGAATATAAGATTTTATTTAGGTTATATATAAATATTATATATAATTATTAGAAT
* *
86611405 TATTAGAATCTAAGATTTTATTTAGGTTATATATAAATATTATATATAATTATTATAAT
1 TATTAGAATATAAGATTTTATTTAGGTTATATATAAATATTATATATAATTATTAGAAT
86611464 TATTA
1 TATTA
86611469 ATTAATATTA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (59 bp):
TATTAGAATATAAGATTTTATTTAGGTTATATATAAATATTATATATAATTATTAGAAT
Found at i:86611461 original size:22 final size:20
Alignment explanation
Indices: 86611431--86611479 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
86611421 TTTATTTAGG
86611431 TTATATATAAATATTATATATAA
1 TTAT-TATAAATATTA-AT-TAA
*
86611454 TTATTATAATTATTAATTAA
1 TTATTATAAATATTAATTAA
86611474 -TATTAT
1 TTATTAT
86611480 GGTTTTATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 6 0.24
20 3 0.12
21 2 0.08
22 10 0.40
23 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATTATAAATATTAATTAA
Found at i:86611472 original size:13 final size:13
Alignment explanation
Indices: 86611431--86611461 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
86611421 TTTATTTAGG
*
86611431 TTATATATAAATA
1 TTATATATAATTA
86611444 TTATATATAATTA
1 TTATATATAATTA
86611457 TTATA
1 TTATA
86611462 ATTATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTATATATAATTA
Found at i:86611989 original size:22 final size:21
Alignment explanation
Indices: 86611964--86612004 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
86611954 AAAAGCTAAT
*
86611964 TAAATAAAAAGTAAAGGAAATA
1 TAAATAAAAAG-AAACGAAATA
86611986 TAAATAAAAAGAAACGAAA
1 TAAATAAAAAGAAACGAAA
86612005 GAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.15
Consensus pattern (21 bp):
TAAATAAAAAGAAACGAAATA
Found at i:86613071 original size:41 final size:40
Alignment explanation
Indices: 86613023--86613122 Score: 107
Period size: 38 Copynumber: 2.5 Consensus size: 40
86613013 TCGACCTCAA
* *
86613023 GTCGATGAGACACTGGGTGTCACTATTTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
* ** *
86613063 ATTCGATGAGTTACT-GG-GT-ACCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
*
86613101 GCCGATGAGACACTGGGTGTCA
1 GTCGATGAGACACTGGGTGTCA
86613123 ACTTTGCTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
37 10 0.22
38 18 0.39
39 4 0.09
40 3 0.07
41 11 0.24
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (40 bp):
GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
Found at i:86615195 original size:2 final size:2
Alignment explanation
Indices: 86615188--86615220 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
86615178 GACATGCAAA
86615188 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
86615221 CTTTCGCGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:86622294 original size:105 final size:101
Alignment explanation
Indices: 86622171--86622369 Score: 274
Period size: 105 Copynumber: 1.9 Consensus size: 101
86622161 ACACTCGTAA
*
86622171 TGCCATAACCCAGCTATGGCCTTATCA-TCAAGATGCCATAGCCTAGCTATGGTCTTACACTTAT
1 TGCCATAACCCAGCTATGGCCTTATCACTCAA-ATGCCATAGCCCAGCTATGGTCTTACA-TT-T
86622235 ACATATACTGCCATGGTCCAACCATGGTCTTATCTTCACGG
63 A-A-ATACTGCCATGGTCCAACCATGGTCTTATCTTCACGG
* * * *
86622276 TGCCATAACCCAGTTATGGTCTTTTCACTGAAATGCCATAGCCCAGCTATGGTCTTACATTTAAA
1 TGCCATAACCCAGCTATGGCCTTATCACTCAAATGCCATAGCCCAGCTATGGTCTTACATTTAAA
* * *
86622341 TATTTCCGTGGTCCAACCATGGTCTTATC
66 TACTGCCATGGTCCAACCATGGTCTTATC
86622370 CGTCAATTCA
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
101 27 0.32
102 1 0.01
103 2 0.02
104 2 0.02
105 50 0.59
106 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (101 bp):
TGCCATAACCCAGCTATGGCCTTATCACTCAAATGCCATAGCCCAGCTATGGTCTTACATTTAAA
TACTGCCATGGTCCAACCATGGTCTTATCTTCACGG
Found at i:86624715 original size:46 final size:45
Alignment explanation
Indices: 86624632--86624776 Score: 161
Period size: 46 Copynumber: 3.2 Consensus size: 45
86624622 TCCCATCCAC
* *
86624632 GGTCTTATTTATTT-TCGGCATGA-TGCCATAGTGTCTTTCAATAAT
1 GGTCTTATTCATTTCTCGTCAT-ATTGCCATAGTGTCTTTCAAT-AT
* *
86624677 GGTCTTATTCATTTCTCGTCATATTGTCATAGTTTCTTTCAATCAT
1 GGTCTTATTCATTTCTCGTCATATTGCCATAGTGTCTTTCAAT-AT
** *
86624723 TATCTTATTCATTTC-CTGTCATGTTGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTCTC-GTCATATTGCCATAGTGTCTTTCAA-TAT
86624769 GGTCTTAT
1 GGTCTTAT
86624777 ACGCCTGAAT
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
45 15 0.18
46 68 0.81
47 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.48
Consensus pattern (45 bp):
GGTCTTATTCATTTCTCGTCATATTGCCATAGTGTCTTTCAATAT
Found at i:86624814 original size:45 final size:45
Alignment explanation
Indices: 86624747--86624866 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 45
86624737 CCTGTCATGT
* * * *
86624747 TGCCATAGTGTCTTTCAACTATGGTCTTA-TACGCCTGAATCGTGA
1 TGCCATAGAGTCTTTCAGCTATGGTCTTACT-CACCTAAATCGTGA
* **
86624792 TGCCATAGAGTCTCTCAGCTATGGTCTTACTCATTTAAATCGTGA
1 TGCCATAGAGTCTTTCAGCTATGGTCTTACTCACCTAAATCGTGA
*
86624837 TGCCATA-ACGTCTTTCAGCGATGGTCTTAC
1 TGCCATAGA-GTCTTTCAGCTATGGTCTTAC
86624867 CCGTCTGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 1 0.02
45 62 0.97
46 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (45 bp):
TGCCATAGAGTCTTTCAGCTATGGTCTTACTCACCTAAATCGTGA
Found at i:86624882 original size:22 final size:22
Alignment explanation
Indices: 86624856--86624900 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
86624846 GTCTTTCAGC
86624856 GATGGTCTTACCCGTCTGAATT
1 GATGGTCTTACCCGTCTGAATT
86624878 GATGGTCTTACCCGTCTGAATT
1 GATGGTCTTACCCGTCTGAATT
86624900 G
1 G
86624901 TGATGCCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (22 bp):
GATGGTCTTACCCGTCTGAATT
Found at i:86625976 original size:9 final size:9
Alignment explanation
Indices: 86625964--86626013 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
86625954 TTTTTAATCA
86625964 AATTAACTG
1 AATTAACTG
86625973 AATTAA-TCG
1 AATTAACT-G
*
86625982 AATTAACCG
1 AATTAACTG
86625991 AATTAA-TCG
1 AATTAACT-G
*
86626000 AATTAACCG
1 AATTAACTG
86626009 AATTA
1 AATTA
86626014 CTTGGGTTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
8 1 0.03
9 33 0.97
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTAACTG
Done.