Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 260 of 344
Found at i:86625980 original size:18 final size:18
Alignment explanation
Indices: 86625957--86626013 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
86625947 TATATGTTTT
* *
86625957 TTAATCAAATTAACTGAA
1 TTAATCGAATTAACCGAA
86625975 TTAATCGAATTAACCGAA
1 TTAATCGAATTAACCGAA
86625993 TTAATCGAATTAACCGAA
1 TTAATCGAATTAACCGAA
86626011 TTA
1 TTA
86626014 CTTGGGTTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.32
Consensus pattern (18 bp):
TTAATCGAATTAACCGAA
Found at i:86631251 original size:28 final size:28
Alignment explanation
Indices: 86631215--86631274 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
86631205 ATATGATAAC
*
86631215 ATTTTTTAGCTTTCTATTATGATATGTG
1 ATTTGTTAGCTTTCTATTATGATATGTG
86631243 ATTTGTTAGCTTTCTATTATGATATGTG
1 ATTTGTTAGCTTTCTATTATGATATGTG
86631271 ATTT
1 ATTT
86631275 TACATCAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.57
Consensus pattern (28 bp):
ATTTGTTAGCTTTCTATTATGATATGTG
Found at i:86636823 original size:25 final size:26
Alignment explanation
Indices: 86636788--86636841 Score: 67
Period size: 24 Copynumber: 2.1 Consensus size: 26
86636778 AATTCTACTA
* *
86636788 TTTTTCTTCTTTCT-CTTTGTT-TTC
1 TTTTTCTTCTTCCTCCTTTATTGTTC
86636812 TTTTTCTCTCTTCCTCCTTTATTGTTC
1 TTTTTCT-TCTTCCTCCTTTATTGTTC
86636839 TTT
1 TTT
86636842 CTAACAAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.28
25 6 0.24
26 6 0.24
27 6 0.24
ACGTcount: A:0.02, C:0.24, G:0.04, T:0.70
Consensus pattern (26 bp):
TTTTTCTTCTTCCTCCTTTATTGTTC
Found at i:86636866 original size:6 final size:6
Alignment explanation
Indices: 86636849--86636887 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
86636839 TTTCTAACAA
* * *
86636849 GCCGCT GTCGCT GCCGCT GCCGCT GCCTCT GCCTCT GCC
1 GCCGCT GCCGCT GCCGCT GCCGCT GCCGCT GCCGCT GCC
86636888 TCCACACCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.49, G:0.28, T:0.23
Consensus pattern (6 bp):
GCCGCT
Found at i:86640786 original size:17 final size:16
Alignment explanation
Indices: 86640764--86640805 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
86640754 GAAAATTCTG
86640764 ATAAATATATAACAATT
1 ATAAATATATAA-AATT
86640781 ATAAATATAT-AAATT
1 ATAAATATATAAAATT
86640796 -TAAATATATA
1 ATAAATATATA
86640806 TATAAAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 9 0.38
15 4 0.17
16 1 0.04
17 10 0.42
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
ATAAATATATAAAATT
Found at i:86640862 original size:8 final size:9
Alignment explanation
Indices: 86640836--86640883 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
86640826 TTACACACGT
86640836 AAATACATA
1 AAATACATA
*
86640845 AAATAGATA
1 AAATACATA
86640854 AAATA-ATA
1 AAATACATA
86640862 AAATA-AT-
1 AAATACATA
86640869 AAATACATA
1 AAATACATA
86640878 ACAATA
1 A-AATA
86640884 AGAATTTTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
7 5 0.14
8 12 0.34
9 14 0.40
10 4 0.11
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (9 bp):
AAATACATA
Found at i:86640862 original size:17 final size:17
Alignment explanation
Indices: 86640836--86640884 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
86640826 TTACACACGT
86640836 AAATACATAAAATAGATA
1 AAATACATAAAATA-ATA
86640854 AAATA-ATAAAATAAT-
1 AAATACATAAAATAATA
86640869 AAATACATAACAATAA
1 AAATACATAA-AATAA
86640885 GAATTTTCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 5 0.17
16 6 0.21
17 13 0.45
18 5 0.17
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.22
Consensus pattern (17 bp):
AAATACATAAAATAATA
Found at i:86646749 original size:22 final size:22
Alignment explanation
Indices: 86646724--86646773 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
86646714 TTTAATAAAA
86646724 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
86646746 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
*
86646768 ACAATA
1 AAAATA
86646774 CATTGTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:86654548 original size:44 final size:44
Alignment explanation
Indices: 86654497--86654584 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
86654487 GATCATGCTT
* *
86654497 ACGAATGTGATTAATTTAATGATTTTAATAATATAACTCACCTA
1 ACGAATGTGATAAATTTAATGATCTTAATAATATAACTCACCTA
86654541 ACGAATGTGATAAATTTAATGATCTTAATAATATAACTCACCTA
1 ACGAATGTGATAAATTTAATGATCTTAATAATATAACTCACCTA
86654585 GATGTGGCAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (44 bp):
ACGAATGTGATAAATTTAATGATCTTAATAATATAACTCACCTA
Found at i:86655601 original size:108 final size:108
Alignment explanation
Indices: 86655483--86655699 Score: 416
Period size: 108 Copynumber: 2.0 Consensus size: 108
86655473 AAAAAACACG
86655483 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
86655548 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
*
86655591 TCAAAAATTTTATCAGAGTAATTAACAAGAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
*
86655656 AAAACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
86655699 T
1 T
86655700 ATTTTGTTTA
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (108 bp):
TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
Found at i:86658250 original size:46 final size:46
Alignment explanation
Indices: 86658200--86658372 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
86658190 TGGTTGAGCA
*
86658200 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
86658246 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
86658293 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* ** *
86658339 CCCGAGGTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86658373 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 60 0.58
47 29 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:86658356 original size:93 final size:93
Alignment explanation
Indices: 86658197--86658367 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
86658187 GGATGGTTGA
* *
86658197 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
86658262 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
* **
86658290 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGGTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
86658355 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
86658368 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:86666270 original size:15 final size:15
Alignment explanation
Indices: 86666243--86666281 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
86666233 AATTTTGAAA
*
86666243 AATATATAACAATTAT
1 AATATATATCAATT-T
86666259 AA-ATATATCAATTT
1 AATATATATCAATTT
86666273 AATATATAT
1 AATATATAT
86666282 ATAAACACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 16 0.76
16 2 0.10
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (15 bp):
AATATATATCAATTT
Found at i:86675913 original size:6 final size:6
Alignment explanation
Indices: 86675899--86675943 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
86675889 CAGCACTAAG
* * *
86675899 TTGTGC TTGTAC TTGTGC TTGTGC TTGTGC TTGTAC TTGTAC TTG
1 TTGTGC TTGTGC TTGTGC TTGTGC TTGTGC TTGTGC TTGTGC TTG
86675944 CGAGAATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.07, C:0.16, G:0.27, T:0.51
Consensus pattern (6 bp):
TTGTGC
Found at i:86675916 original size:12 final size:12
Alignment explanation
Indices: 86675899--86675943 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
86675889 CAGCACTAAG
86675899 TTGTGCTTGTAC
1 TTGTGCTTGTAC
*
86675911 TTGTGCTTGTGC
1 TTGTGCTTGTAC
86675923 TTGTGCTTGTAC
1 TTGTGCTTGTAC
*
86675935 TTGTACTTG
1 TTGTGCTTG
86675944 CGAGAATACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.07, C:0.16, G:0.27, T:0.51
Consensus pattern (12 bp):
TTGTGCTTGTAC
Found at i:86677339 original size:6 final size:7
Alignment explanation
Indices: 86677322--86677362 Score: 64
Period size: 7 Copynumber: 5.6 Consensus size: 7
86677312 GTCCTTATTT
86677322 TTTTTAC
1 TTTTTAC
86677329 TTTTTAC
1 TTTTTAC
86677336 TTTTTAC
1 TTTTTAC
86677343 TTTTTGAC
1 TTTTT-AC
86677351 TTTTTGAC
1 TTTTT-AC
86677359 TTTT
1 TTTT
86677363 CTTTTGTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 19 0.58
8 14 0.42
ACGTcount: A:0.12, C:0.12, G:0.05, T:0.71
Consensus pattern (7 bp):
TTTTTAC
Found at i:86677340 original size:8 final size:8
Alignment explanation
Indices: 86677321--86677362 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
86677311 AGTCCTTATT
86677321 TTTTTTAC
1 TTTTTTAC
86677329 -TTTTTAC
1 TTTTTTAC
86677336 -TTTTTAC
1 TTTTTTAC
*
86677343 TTTTTGAC
1 TTTTTTAC
*
86677351 TTTTTGAC
1 TTTTTTAC
86677359 TTTT
1 TTTT
86677363 CTTTTGTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 14 0.44
8 18 0.56
ACGTcount: A:0.12, C:0.12, G:0.05, T:0.71
Consensus pattern (8 bp):
TTTTTTAC
Found at i:86677373 original size:20 final size:20
Alignment explanation
Indices: 86677319--86677381 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
86677309 TAAGTCCTTA
86677319 TTTT-TTTT-ACTTTTT-AC
1 TTTTCTTTTGACTTTTTGAC
86677336 TTTTTACTTTTTGACTTTTTGAC
1 -TTTT-C-TTTTGACTTTTTGAC
* *
86677359 TTTTCTTTTGTCTTTTTGTC
1 TTTTCTTTTGACTTTTTGAC
86677379 TTT
1 TTT
86677382 ATTTATTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
18 4 0.11
20 16 0.42
21 5 0.13
22 11 0.29
23 2 0.05
ACGTcount: A:0.08, C:0.13, G:0.06, T:0.73
Consensus pattern (20 bp):
TTTTCTTTTGACTTTTTGAC
Found at i:86677502 original size:20 final size:22
Alignment explanation
Indices: 86677477--86677519 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
86677467 TTTGAAATTA
*
86677477 ATTTTTTAAA-ATTTAAATATT
1 ATTTTTAAAATATTTAAATATT
86677498 ATTTTTAAAATATTTAAATATT
1 ATTTTTAAAATATTTAAATATT
86677520 TTAAACTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTTTTAAAATATTTAAATATT
Found at i:86677602 original size:14 final size:15
Alignment explanation
Indices: 86677577--86677609 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
86677567 TTAATTTATT
86677577 TTATAATATTTTAAA
1 TTATAATATTTTAAA
86677592 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
86677606 TTAT
1 TTAT
86677610 TTTTAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:86678020 original size:21 final size:21
Alignment explanation
Indices: 86677983--86678035 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
86677973 GAAAGTTTAA
86677983 AATATTTAAATATTTAAAAAAT
1 AATATTTAAA-ATTTAAAAAAT
86678005 AATATTTAAAATTTAAAAAAT
1 AATATTTAAAATTTAAAAAAT
*
86678026 TA-ATTTAAAA
1 AATATTTAAAA
86678036 ATATATATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 8 0.27
21 12 0.40
22 10 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AATATTTAAAATTTAAAAAAT
Found at i:86678035 original size:34 final size:34
Alignment explanation
Indices: 86677994--86678059 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 34
86677984 ATATTTAAAT
*
86677994 ATTTAAAAA-ATAATATTTAAAATTTAAAAAATTA
1 ATTTAAAAATAT-ATATTTAAAATGTAAAAAATTA
86678028 ATTTAAAAATATATATTTAAAATGTAAAAAAT
1 ATTTAAAAATATATATTTAAAATGTAAAAAAT
86678060 ATATATTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (34 bp):
ATTTAAAAATATATATTTAAAATGTAAAAAATTA
Found at i:86678083 original size:24 final size:24
Alignment explanation
Indices: 86678056--86678122 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
86678046 AAAATGTAAA
86678056 AAATATATATTAATAAAATATTTC
1 AAATATATATTAATAAAATATTTC
* *
86678080 AAATATATATT-TTAAAAT-TTTT
1 AAATATATATTAATAAAATATTTC
* *
86678102 AAAAATAATAATAATAAAATA
1 AAATAT-ATATTAATAAAATA
86678123 AATAAATAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
22 8 0.23
23 10 0.29
24 17 0.49
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (24 bp):
AAATATATATTAATAAAATATTTC
Found at i:86678117 original size:47 final size:46
Alignment explanation
Indices: 86678034--86678122 Score: 126
Period size: 47 Copynumber: 1.9 Consensus size: 46
86678024 ATTAATTTAA
*
86678034 AAATATATATTTAAAATGTAAAAAATATATATTAATAAAATATTTC
1 AAATATATATTTAAAATGTAAAAAATATATAATAATAAAATATTTC
* *
86678080 AAATATATATTTTAAAATTTTTAAAAATA-ATAATAATAAAATA
1 AAATATATA-TTTAAAA-TGTAAAAAATATATAATAATAAAATA
86678123 AATAAATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
46 9 0.24
47 20 0.53
48 9 0.24
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (46 bp):
AAATATATATTTAAAATGTAAAAAATATATAATAATAAAATATTTC
Found at i:86679460 original size:73 final size:73
Alignment explanation
Indices: 86679341--86679487 Score: 276
Period size: 73 Copynumber: 2.0 Consensus size: 73
86679331 TGGAACGGCT
*
86679341 ACCGAATATAATAATTCACCGATTCAGGTCAGTTTCACAAAATGAATAATTCACTTATAAATCTA
1 ACCGAATATAATAATTCACCGATTCAGCTCAGTTTCACAAAATGAATAATTCACTTATAAATCTA
86679406 AATGATAA
66 AATGATAA
*
86679414 ACCGAATGTAATAATTCACCGATTCAGCTCAGTTTCACAAAATGAATAATTCACTTATAAATCTA
1 ACCGAATATAATAATTCACCGATTCAGCTCAGTTTCACAAAATGAATAATTCACTTATAAATCTA
86679479 AATGATAA
66 AATGATAA
86679487 A
1 A
86679488 TTTTCTTTTT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.30
Consensus pattern (73 bp):
ACCGAATATAATAATTCACCGATTCAGCTCAGTTTCACAAAATGAATAATTCACTTATAAATCTA
AATGATAA
Found at i:86679467 original size:35 final size:35
Alignment explanation
Indices: 86679350--86679467 Score: 101
Period size: 35 Copynumber: 3.3 Consensus size: 35
86679340 TACCGAATAT
*
86679350 AATAATTCACCGATTCAGGTCAGTTTCACAAAATG
1 AATAATTCACCGATTCAGCTCAGTTTCACAAAATG
** ** * * * ** **
86679385 AATAATTCACTTATAAATCTAAATGATAAACCGAATG
1 AATAATTCACCGATTCAGCT-CA-GTTTCACAAAATG
86679422 TAATAATTCACCGATTCAGCTCAGTTTCACAAAATG
1 -AATAATTCACCGATTCAGCTCAGTTTCACAAAATG
86679458 AATAATTCAC
1 AATAATTCAC
86679468 TTATAAATCT
Statistics
Matches: 57, Mismatches: 23, Indels: 6
0.66 0.27 0.07
Matches are distributed among these distances:
35 24 0.42
36 9 0.16
37 9 0.16
38 15 0.26
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.30
Consensus pattern (35 bp):
AATAATTCACCGATTCAGCTCAGTTTCACAAAATG
Found at i:86681449 original size:19 final size:20
Alignment explanation
Indices: 86681424--86681462 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86681414 ACAAAAATTA
*
86681424 AAAAAATAAAAATAATTTTC
1 AAAAATTAAAAATAATTTTC
*
86681444 AAAAATTGAAAATAATTTT
1 AAAAATTAAAAATAATTTT
86681463 TAAAGTTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (20 bp):
AAAAATTAAAAATAATTTTC
Found at i:86681476 original size:19 final size:20
Alignment explanation
Indices: 86681432--86681498 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 20
86681422 TAAAAAAATA
*
86681432 AAAATAATTTTCAAAAATTG
1 AAAATAATTTTCAAAAATTC
* *
86681452 AAAATAATTTT-TAAAGTTC
1 AAAATAATTTTCAAAAATTC
86681471 AAAAT-ATTTAT-AAAAATTC
1 AAAATAATTT-TCAAAAATTC
*
86681490 TAAA-AATTT
1 AAAATAATTT
86681499 GGACTTTATA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
18 4 0.10
19 24 0.62
20 11 0.28
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (20 bp):
AAAATAATTTTCAAAAATTC
Found at i:86681564 original size:20 final size:20
Alignment explanation
Indices: 86681503--86681564 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
86681493 AAATTTGGAC
*
86681503 TTTATA-AAAAAATTGTAAAT
1 TTTATATAAAAAA-TCTAAAT
*
86681523 TTT-T-TAAAAAATCTAAAG
1 TTTATATAAAAAATCTAAAT
86681541 TTTATATAAAAAAGT-TAAAT
1 TTTATATAAAAAA-TCTAAAT
86681561 TTTA
1 TTTA
86681565 AAAATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
18 8 0.23
19 8 0.23
20 18 0.51
21 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.42
Consensus pattern (20 bp):
TTTATATAAAAAATCTAAAT
Found at i:86683651 original size:13 final size:13
Alignment explanation
Indices: 86683633--86683657 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86683623 CAGGCATCGG
86683633 TCAAAAATTAAAA
1 TCAAAAATTAAAA
86683646 TCAAAAATTAAA
1 TCAAAAATTAAA
86683658 TTATGATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (13 bp):
TCAAAAATTAAAA
Found at i:86686491 original size:37 final size:36
Alignment explanation
Indices: 86686157--86686585 Score: 174
Period size: 38 Copynumber: 11.6 Consensus size: 36
86686147 GTCAATGCCG
* * * *
86686157 ACCTTTAAAATGGGTTGGTATAGACCTAG-TTAAGACCA
1 ACCTTTAAAA-AGGTTGGGATAGACAT-GTTTAAG-GCA
* ** * * *
86686195 ACCTTTGAAAAATGTTGTTATAAACCTGTATAAGGCA
1 ACCTTT-AAAAAGGTTGGGATAGACATGTTTAAGGCA
* * * * * *
86686232 A-CTATAAAAAGGTTTGTATAGTTCTTGTCTAAGGCA
1 ACCTTTAAAAAGGTTGGGATAG-ACATGTTTAAGGCA
* * * *
86686268 ACTTTTAAGAATA-GTTGGGATAGATC-CGTCTATGGCA
1 ACCTTTAA-AA-AGGTTGGGATAGA-CATGTTTAAGGCA
* *
86686305 ACCTTT-AAAAGGTTGGGATTGAC-TCATTTAAGGCA
1 ACCTTTAAAAAGGTTGGGATAGACAT-GTTTAAGGCA
* * * * *
86686340 ACC-GTAAAAAGGTTGGGATATGCCTTGTCTAAAGCA
1 ACCTTTAAAAAGGTTGGGATA-GACATGTTTAAGGCA
* ** * * * *
86686376 ACCCTTAAAAAAAATTGGTATAAACCT-TATCTAAAGCA
1 A-CCTTTAAAAAGGTTGGGATAGACATGT-T-TAAGGCA
* * * * *
86686414 ACTTTTTAAAAAAGTTGAGATAGATCTTGTCTAAGGCA
1 AC-CTTTAAAAAGGTTGGGATAGA-CATGTTTAAGGCA
* *
86686452 ACCTTTAGGAAAGGTTGGGATAGGCATGTTTAAGGCA
1 ACCTTTA-AAAAGGTTGGGATAGACATGTTTAAGGCA
* * * *
86686489 ACCTTTTAAAAATGTTAGAATAGACATTGTCTAAGGCA
1 ACC-TTTAAAAAGGTTGGGATAGACA-TGTTTAAGGCA
* * *
86686527 ACCTTAAAATAAGGTTGGGATAGACTTGTTTAAAGCA
1 ACCTTTAAA-AAGGTTGGGATAGACATGTTTAAGGCA
* *
86686564 A-CGTTAAAAAGGTTGCGATAGA
1 ACCTTTAAAAAGGTTGGGATAGA
86686586 TTCTTCTAAG
Statistics
Matches: 294, Mismatches: 74, Indels: 49
0.71 0.18 0.12
Matches are distributed among these distances:
34 3 0.01
35 60 0.20
36 32 0.11
37 74 0.25
38 117 0.40
39 7 0.02
40 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (36 bp):
ACCTTTAAAAAGGTTGGGATAGACATGTTTAAGGCA
Found at i:86686519 original size:75 final size:75
Alignment explanation
Indices: 86686407--86686607 Score: 218
Period size: 75 Copynumber: 2.7 Consensus size: 75
86686397 AAACCTTATC
* **
86686407 TAAAGCAACTTTTTAAAAAAGTTGAGATAGATCTTGTCTAAGGCAACCTTTAGGA-AAGGTTGGG
1 TAAAGCAACCTTTTAAAAAAGTTGAGATAGATCTTGTCTAAGGCAACC-TTAAAATAAGGTTGGG
*
86686471 ATAGGCATGTT
65 ATAGACATGTT
* *
86686482 TAAGGCAACCTTTTAAAAATGTT-AGAATAGA-CATTGTCTAAGGCAACCTTAAAATAAGGTTGG
1 TAAAGCAACCTTTTAAAAAAGTTGAG-ATAGATC-TTGTCTAAGGCAACCTTAAAATAAGGTTGG
*
86686545 GATAGACTTGTT
64 GATAGACATGTT
* * * *
86686557 TAAAGCAA-C-GTTAAAAAGGTTGCGATAGAT-TCT-TCTAAGGTAACCTTAAAA
1 TAAAGCAACCTTTTAAAAAAGTTGAGATAGATCT-TGTCTAAGGCAACCTTAAAA
86686608 ACATTAGTAT
Statistics
Matches: 108, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
72 18 0.17
73 16 0.15
74 9 0.08
75 65 0.60
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (75 bp):
TAAAGCAACCTTTTAAAAAAGTTGAGATAGATCTTGTCTAAGGCAACCTTAAAATAAGGTTGGGA
TAGACATGTT
Found at i:86690892 original size:17 final size:17
Alignment explanation
Indices: 86690870--86690902 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
86690860 TGCATATTTG
86690870 AATAAAAACAACCCAAA
1 AATAAAAACAACCCAAA
*
86690887 AATAAAAACAGCCCAA
1 AATAAAAACAACCCAA
86690903 GGAAATATCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.24, G:0.03, T:0.06
Consensus pattern (17 bp):
AATAAAAACAACCCAAA
Found at i:86698883 original size:14 final size:14
Alignment explanation
Indices: 86698858--86698948 Score: 96
Period size: 14 Copynumber: 6.4 Consensus size: 14
86698848 TTATCAAAAT
*
86698858 CCTAAGCCTTAAAC
1 CCTAAACCTTAAAC
86698872 CAC-AAACCTTAAAC
1 C-CTAAACCTTAAAC
*
86698886 CCTAAACTCCTAAAC
1 CCTAAAC-CTTAAAC
*
86698901 CATAAATCC-TAAAC
1 CCTAAA-CCTTAAAC
86698915 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
* *
86698929 CCTAAACCCTAAAA
1 CCTAAACCTTAAAC
86698943 CCTAAA
1 CCTAAA
86698949 TATAGAAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
13 3 0.05
14 49 0.74
15 13 0.20
16 1 0.02
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:86698885 original size:7 final size:7
Alignment explanation
Indices: 86698875--86698948 Score: 94
Period size: 7 Copynumber: 10.4 Consensus size: 7
86698865 CTTAAACCAC
*
86698875 AAACCTT
1 AAACCCT
86698882 AAACCCT
1 AAACCCT
86698889 AAACTCCT
1 AAAC-CCT
*
86698897 AAACCAT
1 AAACCCT
*
86698904 AAATCCT
1 AAACCCT
86698911 AAACCCT
1 AAACCCT
*
86698918 AAACCTT
1 AAACCCT
86698925 AAACCCT
1 AAACCCT
86698932 AAACCCT
1 AAACCCT
*
86698939 AAAACCT
1 AAACCCT
86698946 AAA
1 AAA
86698949 TATAGAAGCT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
7 51 0.88
8 7 0.12
ACGTcount: A:0.47, C:0.34, G:0.00, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:86698948 original size:21 final size:21
Alignment explanation
Indices: 86698867--86698941 Score: 107
Period size: 21 Copynumber: 3.5 Consensus size: 21
86698857 TCCTAAGCCT
86698867 TAAACCAC-AAACCTTAAACCC
1 TAAACC-CTAAACCTTAAACCC
* *
86698888 TAAACTCCTAAACCATAAATCC
1 TAAAC-CCTAAACCTTAAACCC
86698910 TAAACCCTAAACCTTAAACCC
1 TAAACCCTAAACCTTAAACCC
86698931 TAAACCCTAAA
1 TAAACCCTAAA
86698942 ACCTAAATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
21 31 0.65
22 17 0.35
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAACCCTAAACCTTAAACCC
Found at i:86699118 original size:7 final size:7
Alignment explanation
Indices: 86699108--86699172 Score: 85
Period size: 7 Copynumber: 9.0 Consensus size: 7
86699098 TCTTAAATCT
86699108 TAAACCC
1 TAAACCC
86699115 TAAACCC
1 TAAACCC
86699122 TAAACCC
1 TAAACCC
* *
86699129 TAAATCA
1 TAAACCC
86699136 TAAACCC
1 TAAACCC
*
86699143 TAAACCT
1 TAAACCC
86699150 TAAACCC
1 TAAACCC
86699157 TAAACACCC
1 T-AA-ACCC
86699166 TAAACCC
1 TAAACCC
86699173 ATTAGGCATG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
7 41 0.82
8 4 0.08
9 5 0.10
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:86699141 original size:28 final size:28
Alignment explanation
Indices: 86699101--86699160 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
86699091 GGCCAACTCT
*
86699101 TAAATCTTAAACCCTAAACCCTAAACCC
1 TAAATCATAAACCCTAAACCCTAAACCC
*
86699129 TAAATCATAAACCCTAAACCTTAAACCC
1 TAAATCATAAACCCTAAACCCTAAACCC
86699157 TAAA
1 TAAA
86699161 CACCCTAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.22
Consensus pattern (28 bp):
TAAATCATAAACCCTAAACCCTAAACCC
Found at i:86699468 original size:130 final size:133
Alignment explanation
Indices: 86699282--86699619 Score: 373
Period size: 130 Copynumber: 2.5 Consensus size: 133
86699272 GGCATAGTGT
** * * * * *
86699282 TGGACAAAGCTGACTCTTATTTAAGCGTTGCATTAAGCATGCATATCACAACCCTTATATAAAAA
1 TGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGA
* * *
86699347 GTTAACCT-AAGCGTATGTCGGCAAGTCTATCCCAACACTT-AGGAAA-A-TATA-TATCGTCTT
66 GTT-ACCTAAAGCATATGTCGGCAAGTCTATCCCAACACTTCA-GAAAGACAAAACTATCGTCTT
*
86699407 AGGAC
129 AGAAC
*
86699412 TGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTTGGCATGCATATCCCAACCCTTATACAAAGA
1 TGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGA
** * * *
86699477 GTTGGCTAAAGCATATGTTGGCCAGTCTATCCCAACACTTCAGAAAGTGTCGCACAAAACTGTCG
66 GTTACCTAAAGCATATGTCGGCAAGTCTATCCCAACACTTCAGAAA-----G-ACAAAACTATCG
86699542 TCTTAGAAC
125 TCTTAGAAC
* *
86699551 -GAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAA
1 TG-GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAA
86699615 GAGTT
64 GAGTT
86699620 GGCCAAAGCA
Statistics
Matches: 175, Mismatches: 20, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
129 2 0.01
130 93 0.53
131 1 0.01
137 1 0.01
138 3 0.02
139 15 0.09
140 60 0.34
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (133 bp):
TGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGA
GTTACCTAAAGCATATGTCGGCAAGTCTATCCCAACACTTCAGAAAGACAAAACTATCGTCTTAG
AAC
Found at i:86699849 original size:264 final size:265
Alignment explanation
Indices: 86699400--86700003 Score: 876
Period size: 264 Copynumber: 2.3 Consensus size: 265
86699390 AAAATATATA
* * * *
86699400 TCGTCTTAGGACTGGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTTGGCATGCATATCCCAAC
1 TCGTCTTAGGACTAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* *
86699464 CCTTATACAAAGAGTTGGCTAAAGCATATGTTGGCCAGTCTATCCCAACACTTCAGAAAGTGTCG
66 CCTTATACAAAGAGTTGGCCAAAGCA-A--TT---CAGTCTATCCCAACACTTCAGAAAATGTCG
86699529 CACAAAACTGTCGTCTTAGAACGAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATAC
125 CACAAAACTGTCGTCTTAGAACGAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATAC
* *
86699594 ATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAGTCTATCCCAACACTTAGGAAAGTGTC
190 ATATACCAACCCTTATACAAAGAGTTGGCCAAAACATAGTCTATCCCAACACTTAGGAAA-TGTC
86699659 ACCAAAAAAGTG
254 ACCAAAAAAGTG
* * * *
86699671 TCGTCTTAGGACTATACAAAAGCTAACTTTTATTCAAGCGTTGCCTTAGACATACATATCCCAAC
1 TCGTCTTAGGACTAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
*
86699736 CTTTATACAAAGAGTTGGCCAAAGC-A-T-AGTCTATCCCAACACTT-AGTAAAATGTCGCCACA
66 CCTTATACAAAGAGTTGGCCAAAGCAATTCAGTCTATCCCAACACTTCAG-AAAATGTCG-CACA
* * * * *
86699797 AAAGTGTCGTCTTAGGACTATACAAAAGCCAACTTTTATTCAAGCGTTGCCTTAGGCATACATAT
129 AAACTGTCGTCTTAGAACGAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATAT
** *
86699862 ACCAACCCTTATACAAAGAGTTGGCCAAAACATAGTCTATCCCAACACTTAGGAAATGTTGCCAC
194 ACCAACCCTTATACAAAGAGTTGGCCAAAACATAGTCTATCCCAACACTTAGGAAATGTCACCAA
86699927 AAAAGTG
259 AAAAGTG
* * *
86699934 TCGTCTTAGGACTAGATAAAAACCAACTCTTATTCAAGCGTTGCTTTAGGCATACATATCCCAAC
1 TCGTCTTAGGACTAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
86699999 CCTTA
66 CCTTA
86700004 GGAAAGTGTT
Statistics
Matches: 301, Mismatches: 29, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
262 2 0.01
263 100 0.33
264 118 0.39
267 1 0.00
270 1 0.00
271 15 0.05
272 64 0.21
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (265 bp):
TCGTCTTAGGACTAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
CCTTATACAAAGAGTTGGCCAAAGCAATTCAGTCTATCCCAACACTTCAGAAAATGTCGCACAAA
ACTGTCGTCTTAGAACGAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATAC
CAACCCTTATACAAAGAGTTGGCCAAAACATAGTCTATCCCAACACTTAGGAAATGTCACCAAAA
AAGTG
Found at i:86699983 original size:131 final size:132
Alignment explanation
Indices: 86699500--86700003 Score: 798
Period size: 132 Copynumber: 3.8 Consensus size: 132
86699490 TATGTTGGCC
* * *
86699500 AGTCTATCCCAACACTTCA-GAAAGTGTCG-CACAAAACTGTCGTCTTAGAACGAGACAAAAGCC
1 AGTCTATCCCAACACTT-AGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCC
86699563 AACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
65 AACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
86699628 CAT
130 CAT
* * * *
86699631 AGTCTATCCCAACACTTAGGAAAGTGTCACCAAAAAAGTGTCGTCTTAGGACTATACAAAAGCTA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCA
* * *
86699696 ACTTTTATTCAAGCGTTGCCTTAGACATACATATCCCAACCTTTATACAAAGAGTTGGCCAAAGC
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
86699761 AT
131 AT
* * *
86699763 AGTCTATCCCAACACTTAGTAAAATGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCA
* * *
86699828 ACTTTTATTCAAGCGTTGCCTTAGGCATACATATACCAACCCTTATACAAAGAGTTGGCCAAAAC
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
86699893 AT
131 AT
* * *
86699895 AGTCTATCCCAACACTTAGGAAA-TGTTGCCACAAAAGTGTCGTCTTAGGACTAGATAAAAACCA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCA
*
86699959 ACTCTTATTCAAGCGTTGCTTTAGGCATACATATCCCAACCCTTA
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTA
86700004 GGAAAGTGTT
Statistics
Matches: 344, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
130 1 0.00
131 105 0.31
132 238 0.69
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.26
Consensus pattern (132 bp):
AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCA
ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
AT
Found at i:86700004 original size:91 final size:91
Alignment explanation
Indices: 86699899--86700094 Score: 313
Period size: 91 Copynumber: 2.2 Consensus size: 91
86699889 AAACATAGTC
*
86699899 TATCCCAACACTTAGGAAA-TGTTGCCACAAAAGTGTCGTCTTAGGACTAGATAAAAACCAACTC
1 TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCTTAGGACTAGA-AAAAACCAACTC
86699963 TTATTCAAGCGTTGCTTTAGGCATACA
65 TTATTCAAGCGTTGCTTTAGGCATACA
* * *
86699990 TATCCCAACCCTTAGGAAAGTGTTGCCCCAAAAGTGTCGTCTTAGGACTAGACAAAGCCAACTCT
1 TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCTTAGGACTAGAAAAAACCAACTCT
* *
86700055 TATTTAAGCGTTGCTTTAGGCATGCA
66 TATTCAAGCGTTGCTTTAGGCATACA
*
86700081 TATACCAACCCTTA
1 TATCCCAACCCTTA
86700095 TACAAAGAGT
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
91 66 0.68
92 31 0.32
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (91 bp):
TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCTTAGGACTAGAAAAAACCAACTCT
TATTCAAGCGTTGCTTTAGGCATACA
Found at i:86700226 original size:119 final size:120
Alignment explanation
Indices: 86700012--86700232 Score: 329
Period size: 120 Copynumber: 1.9 Consensus size: 120
86700002 TAGGAAAGTG
* **
86700012 TTGCCCCAAAAGTGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCTTTAGGCA
1 TTGCCCCAAAAGTGTCGTCTTAGGACTAGACAAAGCCAACTCCTATAAAAGCGTTGCTTTAGGCA
*
86700077 TGCATATACCAACCCTTATACAAAGAGTTG-CTAAAGTCCAATCTATACCAACAC
66 TGCATATACCAACACTTATACAAAGAGTTGCCTAAAGTCCAATCTATACCAACAC
***
86700131 TTGCCCCAAAAGTGTCGTCTTAGGACTAGACTTTTGCCAACTCCTATAAAAGCGTTGCTTTAGGC
1 TTGCCCCAAAAGTGTCGTCTTAGGACTAGAC-AAAGCCAACTCCTATAAAAGCGTTGCTTTAGGC
* * *
86700196 TTGCATATCCCAACACTTAT-GAAAGAGTTGCCTAAAG
65 ATGCATATACCAACACTTATACAAAGAGTTGCCTAAAG
86700233 CGTATTTTGG
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 40 0.44
120 50 0.56
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (120 bp):
TTGCCCCAAAAGTGTCGTCTTAGGACTAGACAAAGCCAACTCCTATAAAAGCGTTGCTTTAGGCA
TGCATATACCAACACTTATACAAAGAGTTGCCTAAAGTCCAATCTATACCAACAC
Found at i:86700437 original size:25 final size:24
Alignment explanation
Indices: 86700385--86700454 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 24
86700375 ATATGTACGT
* *
86700385 AAAAATAATATAATATAAAGAGGA
1 AAAAATAATATAATATAAAAAAGA
86700409 AAAAATAATGATAATATAATAAAAGA
1 AAAAATAAT-ATAATATAA-AAAAGA
86700435 AAAATATATATATACATATA
1 AAAA-ATA-ATATA-ATATA
86700455 CCAGAAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
24 9 0.23
25 9 0.23
26 8 0.21
27 6 0.15
28 7 0.18
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.26
Consensus pattern (24 bp):
AAAAATAATATAATATAAAAAAGA
Found at i:86700756 original size:21 final size:21
Alignment explanation
Indices: 86700698--86700741 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
86700688 ATACTAGTAC
* *
86700698 TAATAATAGTGATAATGAATA
1 TAATAATAATGATAATAAATA
86700719 TAATAATAATGATAATAAATA
1 TAATAATAATGATAATAAATA
86700740 TA
1 TA
86700742 TATATACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (21 bp):
TAATAATAATGATAATAAATA
Found at i:86700846 original size:26 final size:26
Alignment explanation
Indices: 86700816--86700934 Score: 94
Period size: 26 Copynumber: 4.8 Consensus size: 26
86700806 ATAATAATAA
* * * *
86700816 TAAAAGTATGTACGTAATATAG-TGT
1 TAAAAATATATACATAATATAGTTAT
*
86700841 TAAAAATAAATACATAATATAGTTAT
1 TAAAAATATATACATAATATAGTTAT
86700867 TAAAAATATATACATAATATA---A-
1 TAAAAATATATACATAATATAGTTAT
*
86700889 T-AAAATATATGA-ATAATAT-GATATTT
1 TAAAAATATAT-ACATAATATAG-T-TAT
86700915 TAAAAA-ATATACATAATATA
1 TAAAAATATATACATAATATA
86700935 AAAAATATAA
Statistics
Matches: 76, Mismatches: 7, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
21 16 0.21
22 2 0.03
23 1 0.01
25 19 0.25
26 34 0.45
27 4 0.05
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (26 bp):
TAAAAATATATACATAATATAGTTAT
Found at i:86700895 original size:21 final size:21
Alignment explanation
Indices: 86700869--86700943 Score: 73
Period size: 21 Copynumber: 3.4 Consensus size: 21
86700859 ATAGTTATTA
86700869 AAAATATATACATAATATAAT
1 AAAATATATACATAATATAAT
86700890 AAAATATATGA-ATAATATGATATTTT
1 AAAATATAT-ACATAATAT-A-A---T
*
86700916 AAAAAATATACATAATATAA-
1 AAAATATATACATAATATAAT
86700936 AAAATATA
1 AAAATATA
86700944 ATATAAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
20 7 0.16
21 16 0.36
22 2 0.04
23 1 0.02
24 1 0.02
25 2 0.04
26 16 0.36
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAATATATACATAATATAAT
Found at i:86700946 original size:14 final size:15
Alignment explanation
Indices: 86700917--86700965 Score: 64
Period size: 14 Copynumber: 3.1 Consensus size: 15
86700907 TGATATTTTA
86700917 AAAAATATACATAATAT
1 AAAAA-ATA-ATAATAT
86700934 AAAAAAT-ATAATAT
1 AAAAAATAATAATAT
86700948 AAAAAATACATAATAT
1 AAAAAATA-ATAATAT
86700964 AA
1 AA
86700966 TATTAATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 14 0.47
16 11 0.37
17 5 0.17
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAAAATAATAATAT
Found at i:86700953 original size:16 final size:16
Alignment explanation
Indices: 86700916--86700965 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
86700906 ATGATATTTT
*
86700916 AAAAAATATACATAATAT
1 AAAAAATATA-AT-ATAA
86700934 AAAAAATATAATATAA
1 AAAAAATATAATATAA
* *
86700950 AAAATACATAATATAA
1 AAAAAATATAATATAA
86700966 TATTAATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 17 0.59
17 2 0.07
18 10 0.34
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAAATATAATATAA
Found at i:86701153 original size:3 final size:3
Alignment explanation
Indices: 86701131--86701181 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
86701121 AATGAAATGC
* *
86701131 TAA TAAA TAA AAA T-A TAA TAA TAA TAA TAA TAA TAG TAA TAA -AA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
86701175 T-A TAA TA
1 TAA TAA TA
86701182 GTATAAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 6 0.15
3 31 0.77
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:86704022 original size:16 final size:18
Alignment explanation
Indices: 86703996--86704048 Score: 67
Period size: 16 Copynumber: 3.1 Consensus size: 18
86703986 TATAAAATAG
*
86703996 ATTAT-ATAATTTTATTA
1 ATTATAATAATTTTATAA
86704013 A-TA-AATAATTTTGATAA
1 ATTATAATAATTTT-ATAA
86704030 ATTATAATAATTTTATAA
1 ATTATAATAATTTTATAA
86704048 A
1 A
86704049 AAATATCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 10 0.32
17 5 0.16
18 7 0.23
19 9 0.29
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
ATTATAATAATTTTATAA
Found at i:86704065 original size:35 final size:34
Alignment explanation
Indices: 86703980--86704066 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 34
86703970 ACTATTAATT
* *
86703980 AAATATTATAAAATAGATTATATAATTTTATTAAT
1 AAATATTAT-AAATAAATTATATAATTTTATTAAA
**
86704015 AAATAATT-TTGATAAATTATAATAATTTTA-TAAA
1 AAAT-ATTATAAATAAATTAT-ATAATTTTATTAAA
86704049 AAATATCTATAAATAAAT
1 AAATAT-TATAAATAAAT
86704067 AACATATTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
33 2 0.05
34 16 0.38
35 21 0.50
36 3 0.07
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (34 bp):
AAATATTATAAATAAATTATATAATTTTATTAAA
Found at i:86706049 original size:31 final size:31
Alignment explanation
Indices: 86705991--86706059 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
86705981 TTAACAGCCC
* * * *
86705991 AATAGTTTAAATTAAAACTTTCGAATAATTT
1 AATAATTTAAATAAAAACTTTCAAATAACTT
* *
86706022 AGTAATTTAAATAAAAATTTTCAAATAACTT
1 AATAATTTAAATAAAAACTTTCAAATAACTT
86706053 AATAATT
1 AATAATT
86706060 ATTTTATAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (31 bp):
AATAATTTAAATAAAAACTTTCAAATAACTT
Found at i:86721050 original size:3 final size:3
Alignment explanation
Indices: 86721044--86721142 Score: 105
Period size: 3 Copynumber: 34.0 Consensus size: 3
86721034 TTTTTTTTTC
* * *
86721044 TCT TCT TCT TCT TCT TCT TTT TCT TC- TCC TAT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * * *
86721091 CCT TC- TCC TAT TCT TTT TCT TCT TCT TCT TCT TCT T-T TCC TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86721137 TCT TCT
1 TCT TCT
86721143 ACTGCCCAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
2 6 0.08
3 73 0.92
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:86721071 original size:26 final size:26
Alignment explanation
Indices: 86721041--86721142 Score: 116
Period size: 26 Copynumber: 3.9 Consensus size: 26
86721031 ATATTTTTTT
*
86721041 TTCTCTTCTTCTTCTTCTTCTTTTTC
1 TTCTCTTCTTCTTCTTCTTCTTCTTC
* * *
86721067 TTCTCCTATTCTTCTTCTTCTTCTCC
1 TTCTCTTCTTCTTCTTCTTCTTCTTC
* * *
86721093 TTCTCCTATTCTTTTTCTTCTTCTTC
1 TTCTCTTCTTCTTCTTCTTCTTCTTC
*
86721119 TTCTTCTT-TTCCTCTTCTTCTTCT
1 TTC-TCTTCTTCTTCTTCTTCTTCT
86721143 ACTGCCCAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
26 63 0.95
27 3 0.05
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (26 bp):
TTCTCTTCTTCTTCTTCTTCTTCTTC
Found at i:86721080 original size:20 final size:20
Alignment explanation
Indices: 86721055--86721142 Score: 83
Period size: 20 Copynumber: 4.5 Consensus size: 20
86721045 CTTCTTCTTC
*
86721055 TTCTTCTTTTTCTTCTCCTA
1 TTCTTCTTCTTCTTCTCCTA
86721075 TTCTTCTTCTTCTTCTCCT-
1 TTCTTCTTCTTCTTCTCCTA
* * * *
86721094 TCTCCTATTCTT-TT-TCTTC
1 T-TCTTCTTCTTCTTCTCCTA
* *
86721113 TTCTTCTTCTTCTTTTCCTC
1 TTCTTCTTCTTCTTCTCCTA
86721133 TTCTTCTTCT
1 TTCTTCTTCT
86721143 ACTGCCCAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
18 11 0.19
19 6 0.11
20 40 0.70
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (20 bp):
TTCTTCTTCTTCTTCTCCTA
Found at i:86724994 original size:4 final size:4
Alignment explanation
Indices: 86724987--86725018 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
86724977 AAAACTATTT
86724987 ATAA ATAA A-AA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
86725019 ATGTTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:86730689 original size:22 final size:21
Alignment explanation
Indices: 86730664--86730704 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
86730654 AAAGCCTCAT
86730664 TTTTCTTTCGATTTTATTTTCC
1 TTTTCTTT-GATTTTATTTTCC
*
86730686 TTTTCTTTGATTTTTTTTT
1 TTTTCTTTGATTTTATTTT
86730705 ATCTATTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.07, C:0.12, G:0.05, T:0.76
Consensus pattern (21 bp):
TTTTCTTTGATTTTATTTTCC
Found at i:86731367 original size:14 final size:14
Alignment explanation
Indices: 86731350--86731379 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
86731340 TACTTTATTA
86731350 TTATTATTATTTAT
1 TTATTATTATTTAT
86731364 TTATTATTATTTAT
1 TTATTATTATTTAT
86731378 TT
1 TT
86731380 GTTTCAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTATTATTTAT
Found at i:86731367 original size:17 final size:16
Alignment explanation
Indices: 86731338--86731378 Score: 59
Period size: 14 Copynumber: 2.6 Consensus size: 16
86731328 TACGTTTTGG
86731338 ATTACTTTATTATTATT
1 ATTA-TTTATTATTATT
86731355 ATTATTTA-T-TTATT
1 ATTATTTATTATTATT
86731369 ATTATTTATT
1 ATTATTTATT
86731379 TGTTTCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 13 0.57
15 2 0.09
16 4 0.17
17 4 0.17
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTATTTATTATTATT
Found at i:86744096 original size:176 final size:176
Alignment explanation
Indices: 86743802--86744474 Score: 1064
Period size: 176 Copynumber: 3.8 Consensus size: 176
86743792 TAGCGACATC
* *
86743802 GTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAA-TTACAGATCTTAT
1 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACT-AAAAGTTACAGATCTTAT
* *
86743866 CTCCATGTATCGGCTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATAGA
65 CTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
* *
86743931 GCAGATTTTAGCCACTAACCTTATCTCTCTGAGTTTGTAGAGAGCAG
130 GCAGATTTTAGCCACTAACCTTATCTCTTTGAGTTTGAAGAGAGCAG
*
86743978 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTACAGGAAGCAGACTAAAAGTTACAGATCTTATC
1 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTAAAAGTTACAGATCTTATC
*
86744043 TCCATGTATCGGTTATGGAGCAGATCA-AAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
66 TCCATGTATCGGCTATGGAGCAGATCAGAA-ATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
* *
86744107 GCAAATTTTAGCCACTAACCTTATCTCTTTGAGTTTGCAGAGAGCAG
130 GCAGATTTTAGCCACTAACCTTATCTCTTTGAGTTTGAAGAGAGCAG
*
86744154 GTTGAAGATACAGGTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTAAAAGTTACAGATCTTATC
1 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTAAAAGTTACAGATCTTATC
86744219 TCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAG
66 TCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAG
* * * * *
86744284 TAGATTTTAGCCACCAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAG
131 CAGATTTTAGCCACTAACCTTATCTCTTTGAGTTTG-AAGAGAGCAG
* * *
86744331 GTTGAAGATATAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATTGAAAGTTACAGATCTTATC
1 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTAAAAGTTACAGATCTTATC
* * * *
86744396 TCCATGTATCGGCTATGGAACAGATC-GAAGATGGCGAGTCTTATCTCCATATATTGGCTATTGA
66 TCCATGTATCGGCTATGGAGCAGATCAGAA-ATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
**
86744460 GTGGATTTTAGCCAC
130 GCAGATTTTAGCCAC
86744475 CGGCTTTGTC
Statistics
Matches: 464, Mismatches: 28, Indels: 9
0.93 0.06 0.02
Matches are distributed among these distances:
175 6 0.01
176 316 0.68
177 142 0.31
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (176 bp):
GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTAAAAGTTACAGATCTTATC
TCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAG
CAGATTTTAGCCACTAACCTTATCTCTTTGAGTTTGAAGAGAGCAG
Found at i:86746288 original size:45 final size:44
Alignment explanation
Indices: 86746199--86746435 Score: 124
Period size: 45 Copynumber: 5.3 Consensus size: 44
86746189 TGGTGGCTTA
* * * * * **
86746199 AATCTGCTTCACTGCAACTTCAGGAAGGCAATATTCGCCTTCTTC
1 AATCTACTCCACTACAACTTCAGGGAGGCAAGATT-GCAATCTTC
*
86746244 AATCTGCTCCACTACAACTTCAGGGAGGCAAGATCTGCAATCTTC
1 AATCTACTCCACTACAACTTCAGGGAGGCAAGAT-TGCAATCTTC
** ** ** * *
86746289 AGCCTACTCCACTACTGCTT-AGGGAGATATGA-TG--ATGGCTTA
1 AATCTACTCCACTACAACTTCAGGGAGGCAAGATTGCAAT--CTTC
* * * ** * *
86746331 AATTTACTTCATTGTAACTTCAGGAAGGCAAGATT-CACCGTCTTC
1 AATCTACTCCACTACAACTTCAGGGAGGCAAGATTGCA--ATCTTC
* * *
86746376 GATCTGCTCCACTACAATTTCAGGGAGGCAAGATCTGCAATCTTC
1 AATCTACTCCACTACAACTTCAGGGAGGCAAGAT-TGCAATCTTC
**
86746421 AGCCTACTCCACTAC
1 AATCTACTCCACTAC
86746436 TGCTTAGGGA
Statistics
Matches: 137, Mismatches: 44, Indels: 22
0.67 0.22 0.11
Matches are distributed among these distances:
40 2 0.01
42 16 0.12
43 8 0.06
44 10 0.07
45 96 0.70
46 2 0.01
47 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (44 bp):
AATCTACTCCACTACAACTTCAGGGAGGCAAGATTGCAATCTTC
Found at i:86746375 original size:132 final size:132
Alignment explanation
Indices: 86746130--86746576 Score: 608
Period size: 132 Copynumber: 3.4 Consensus size: 132
86746120 CTATTGCAAA
* * * * * * *
86746130 TTCAGGGAGACAAGATCTACAATCTTTAGCCTACTTCGCTACTACTTAGAGAGATAGGATGGTGG
1 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
* * * *
86746195 CTTAAATCTGCTTCACTGCAACTTCAGGAAGGCAATATTCGCCTTCTTCAATCTGCTCCACTACA
66 CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCTCCACTACA
86746260 AC
131 AC
* *
86746262 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATATGATGATGG
1 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
* * * *
86746327 CTTAAATTTACTTCATTGTAACTTCAGGAAGGCAAGATTCACCGTCTTCGATCTGCTCCACTACA
66 CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCTCCACTACA
*
86746392 AT
131 AC
*
86746394 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGAGGGTGG
1 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
* * * * **
86746459 CTAAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTTGCCGTATTCGATCTGCTCTACTGTA
66 CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCTCCACTACA
86746524 AC
131 AC
* * * **
86746526 TTCAGGGAGGCAAGATCTGTAATTTTCAGTCTGTTACC-CTACTGCTTAGGG
1 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACT-CCACTACTGCTTAGGG
86746577 GGTTAAAGCC
Statistics
Matches: 277, Mismatches: 37, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
132 275 0.99
133 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (132 bp):
TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCTCCACTACA
AC
Found at i:86746653 original size:87 final size:86
Alignment explanation
Indices: 86746537--86747357 Score: 731
Period size: 87 Copynumber: 9.5 Consensus size: 86
86746527 TCAGGGAGGC
* * * *
86746537 AAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCT
1 AAGATCTGTAA-ATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCT
*
86746602 GTTTCCCTACTACTTAGGGGTTT
65 GTTTCCCTACTGCTTAGGGG-TT
* ** *
86746625 AAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGTCTTTGATCTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTG
86746690 TTTCCCTACTGCTTAGGGGGTT
66 TTTCCCTACTGCTTA-GGGGTT
* * * ** *
86746712 AAGATCTAT-AATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCTCATCGCCTTTGATCTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTG
* *
86746776 CTTCCCTACTGCTTAAGGGTT
66 TTTCCCTACTGCTTAGGGGTT
** ** * * * * ** *
86746797 AAGATCCATCACCTTC-GATCTGTTTCCTTACTGCTTAGGGGGTTAAGATCTATCATCTTCGATC
1 AAGATCTGT-AAATTCAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATC
**
86746861 TGTTTCCCTACTATTTAGGGGGTT
64 TGTTTCCCTACTGCTTA-GGGGTT
* * * * * * *
86746885 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCGTAGGGGTTTAAGGCTCTTAACCTTTGATCTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTG
* **
86746950 -TTCCACCACTGCTTAGGGAGAC
66 TTTCC-CTACTGCTTAGGG-GTT
* * * * * * *
86746972 AAAATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCTTTATTTTCGATTTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTG
* **
86747037 -CTCCACTACTGCTTAGGGAGAC
66 TTTCC-CTACTGCTTAGGG-GTT
* * * * * *
86747059 AAGATCTGTAAATTTAGCCTGTTATCGTACTACTTACGGGG-TTAAGGCCCTTCGTCTTCGATCT
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTA-GGGGTTTAAGGCCCATCATCTTCGATCT
** * **
86747123 -ACTCCACTACTACTTAGGGAGAC
65 GTTTCC-CTACTGCTTAGGG-GTT
* * * ** *
86747146 AAGATCTGT-AATTCAGCCTGTTACCCTAATACTTAGGGGTTTAAGGTCTGTCACCTTCGATCTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTG
* * **
86747210 TTTCCCTATTACTTAGGGAGAC
66 TTTCCCTACTGCTTAGGG-GTT
* * * * * *
86747232 AAGATCTGTAAATTTAGCCTGTTACCTTACTGCTTAGAGGG-TTAAGGACCTTCGTCTTTGATCT
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG-GGGTTTAAGGCCCATCATCTTCGATCT
86747296 GTTTCCCTACTGCTTAAGGGGTT
65 GTTTCCCTACTGCTT-AGGGGTT
* *
86747319 AAGATTTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
86747358 AGATAAGGCT
Statistics
Matches: 610, Mismatches: 108, Indels: 32
0.81 0.14 0.04
Matches are distributed among these distances:
85 17 0.03
86 139 0.23
87 416 0.68
88 38 0.06
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (86 bp):
AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTG
TTTCCCTACTGCTTAGGGGTT
Found at i:86746887 original size:44 final size:44
Alignment explanation
Indices: 86746555--86746891 Score: 285
Period size: 44 Copynumber: 7.8 Consensus size: 44
86746545 TAATTTTCAG
* * *
86746555 TCTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTATCATCTTCGA
* * * **
86746599 TCTGTTTCCCTACTACTTAGGGGTTTAAGATCTGT-AAATTC-A
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
* * * ** * ** *
86746641 GCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGTCTTTGA
1 TC-TGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
*
86746686 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTAT-A-ATTC-A
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
* * * * * ** *
86746727 GCCTGTTACCCTACTGCTTAAGGGTTTAAG-GCTCATCGCCTTTGA
1 -TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-ATCATCTTCGA
* * * *
86746772 TCTGCTTCCCTACTGCTTA-AGGGTTAAGATCCATCACCTTCGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
*
86746815 TCTGTTTCCTTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
**
86746859 TCTGTTTCCCTACTATTTAGGGGGTTAAGATCT
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
86746892 GTAAATTTAG
Statistics
Matches: 229, Mismatches: 53, Indels: 22
0.75 0.17 0.07
Matches are distributed among these distances:
41 3 0.01
42 31 0.14
43 64 0.28
44 127 0.55
45 4 0.02
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (44 bp):
TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
Found at i:86746923 original size:43 final size:43
Alignment explanation
Indices: 86746537--86747357 Score: 225
Period size: 44 Copynumber: 18.9 Consensus size: 43
86746527 TCAGGGAGGC
* *
86746537 AAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGGTT
1 AAGATCTGTAAATTT-AGCCTGTTACCCTACTGCTTAGGGGGTT
* ** * * * * * *
86746581 AA-AGC-CCATCATCTTCGATCTGTTTCCCTACTACTTAGGGGTTT
1 AAGATCTGTA-AAT-TTAG-CCTGTTACCCTACTGCTTAGGGGGTT
* * *
86746625 AAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGTTT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTT
* * *
86746668 AAGGCCCAT-TGT--CTTT-GATCTGTTTCCCTACTGCTTAGGGGGTT
1 AA-G---ATCTGTAAATTTAG-CCTGTTACCCTACTGCTTAGGGGGTT
* * * *
86746712 AAGATCTAT-AATTCAGCCTGTTACCCTACTGCTTAAGGGTTT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTT
* ** * *
86746754 AAGGCTCATCG--CCTTT-GATCTGCTT-CCCTACTGCTTA-AGGGTT
1 AA-GATC-T-GTAAATTTAG-CCTG-TTACCCTACTGCTTAGGGGGTT
** * ** * * * *
86746797 AAGATCCATCACCTTCGATCTGTTTCCTTACTGCTTAGGGGGTT
1 AAGATCTGTAAATTTAG-CCTGTTACCCTACTGCTTAGGGGGTT
* * * * * **
86746841 AAGATCTAT-CATCTTCGATCTGTTTCCCTACTATTTAGGGGGTT
1 AAGATCTGTAAAT-TTAG-CCTGTTACCCTACTGCTTAGGGGGTT
* *
86746885 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCGTAGGGGTTT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTT
* * * * * **
86746928 AAGGCTCT-TAACCTTT-GATCTGTT-CCACCACTGCTTAGGGAGAC
1 AA-GATCTGTAA-ATTTAG-CCTGTTACC-CTACTGCTTAGGGGGTT
* * *
86746972 AAAATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGAGTTT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTT
** * * * ** * * **
86747015 AAGGCCCT-TTATTTTCGATTTGCT-CCACTACTGCTTAGGGAGAC
1 AA-GATCTGTAAATTTAG-CCTGTTACC-CTACTGCTTAGGGGGTT
* * * *
86747059 AAGATCTGTAAATTTAGCCTGTTATCGTACTACTTACGGGGTT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTT
** ** * * ** * * **
86747102 AAGGCCCT-T-CGTCTTCGATCTACT-CCACTACTACTTAGGGAGAC
1 AA-GATCTGTAAAT-TTAG-CCTGTTACC-CTACTGCTTAGGGGGTT
* * * *
86747146 AAGATCTGT-AATTCAGCCTGTTACCCTAATACTTAGGGGTTT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTT
* * ** * * * * * * **
86747188 AAGGTCTGTCACCTTCGATCTGTTTCCCTATTACTTAGGGAGAC
1 AAGATCTGTAAATTTAG-CCTGTTACCCTACTGCTTAGGGGGTT
* *
86747232 AAGATCTGTAAATTTAGCCTGTTACCTTACTGCTTAGAGGGTT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTT
* * * * *
86747275 AAGGACCTTCGT--CTTT-GATCTGTTTCCCTACTGCTTAAGGGGTT
1 AA-GATC-T-GTAAATTTAG-CCTGTTACCCTACTGCTTAGGGGGTT
*
86747319 AAGATTTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
86747358 AGATAAGGCT
Statistics
Matches: 547, Mismatches: 178, Indels: 105
0.66 0.21 0.13
Matches are distributed among these distances:
40 2 0.00
41 4 0.01
42 60 0.11
43 196 0.36
44 268 0.49
45 9 0.02
46 6 0.01
47 2 0.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (43 bp):
AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTT
Found at i:86747206 original size:347 final size:344
Alignment explanation
Indices: 86746524--86747356 Score: 915
Period size: 347 Copynumber: 2.4 Consensus size: 344
86746514 CTCTACTGTA
* * * * *
86746524 ACTTCAGGGAGGCAAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCA
1 ACTT-AGGGAGACAAGATCTGTAAATTT-AGCCTGTTACCCTACTGCTTA-GGGGTT-AAGGCCT
* * * *
86746589 TCATCTTCGATCTGTTTCCCTACTACTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTACCCTA
62 TCATCTTTGATCTGTTTCCCTACTGCTTAGGGG-TTAAGATCTGTAAATTTAGCCTGTTACCCTA
* * * * **
86746654 CTGCTTAGGGGTTTAAGGCCCATTGTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
126 CTGCTTAGGAGTTTAAGGCCCATTATCTTTGATCTGTCTCCCTACTGCTTAGGGAGACAAGATCT
* * * * *
86746719 ATAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCTCATCGCCTTTGATCTGCTTCCCTA
191 ATAATTCAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCCCATCGCCTTCGATCTACTTCCCTA
* ** * * * * * *
86746784 CTGCTTAAGGGTTAAGATCCATCACCTTCGATCTGTTTCCTTACTGCTTAGGGGGTTAAGATCTA
256 CTACTTAAGGGACAAGATCCATCACATTCGACCTGTTACCCTAATACTTAGGGGGTTAAGATCTA
*
86746849 TCATCTTCGATCTGTTTCCCTACT
321 TCACCTTCGATCTGTTTCCCTACT
* * ** * *
86746873 ATTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCGTAGGGGTTTAAGGCTCTTA
1 ACTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGC-CTTC
* * ** *
86746938 ACCTTTGATCTG-TTCCACCACTGCTTAGGGAGACAAAATCTGTAAATTTAGCCTGTTACCCTAC
64 ATCTTTGATCTGTTTCC-CTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGCCTGTTACCCTAC
* *
86747002 TGCTTAGGAGTTTAAGGCCCTTTAT-TTTCGATTTG-CTCCACTACTGCTTAGGGAGACAAGATC
127 TGCTTAGGAGTTTAAGGCCCATTATCTTT-GATCTGTCTCC-CTACTGCTTAGGGAGACAAGATC
* * * * * * *
86747065 TGTAAATTTAGCCTGTTATCGTACTACTTACGGGGTTAAGGCCCTTCGTCTTCGATCTAC-TCCA
190 TAT-AATTCAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCCCATCGCCTTCGATCTACTTCC-
* ** *
86747129 CTACTACTTAGGGAGACAAGATCTGT-A-ATTC-AGCCTGTTACCCTAATACTTAGGGGTTTAAG
253 CTACTACTTAAGG-GACAAGATCCATCACATTCGA-CCTGTTACCCTAATACTTAGGGGGTTAAG
* * *
86747191 GTCTGTCACCTTCGATCTGTTTCCCTATT
316 ATCTATCACCTTCGATCTGTTTCCCTACT
*
86747220 ACTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCTTACTGCTTAGAGGGTTAAGGACCTTC
1 ACTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAG-GGGTTAAGG-CCTTC
* *
86747285 GTCTTTGATCTGTTTCCCTACTGCTTAAGGGGTTAAGATTTGTAAATTTAGCCTGTTACCCTACT
64 ATCTTTGATCTGTTTCCCTACTGCTT-AGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACT
86747350 GCTTAGG
128 GCTTAGG
86747357 GAGATAAGGC
Statistics
Matches: 400, Mismatches: 70, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
346 19 0.05
347 281 0.70
348 89 0.22
349 11 0.03
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (344 bp):
ACTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCTTCAT
CTTTGATCTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCT
TAGGAGTTTAAGGCCCATTATCTTTGATCTGTCTCCCTACTGCTTAGGGAGACAAGATCTATAAT
TCAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCCCATCGCCTTCGATCTACTTCCCTACTACT
TAAGGGACAAGATCCATCACATTCGACCTGTTACCCTAATACTTAGGGGGTTAAGATCTATCACC
TTCGATCTGTTTCCCTACT
Found at i:86747256 original size:260 final size:255
Alignment explanation
Indices: 86746536--86747357 Score: 841
Period size: 260 Copynumber: 3.2 Consensus size: 255
86746526 TTCAGGGAGG
* * * *
86746536 CAAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC
1 CAAGATCTGTAAATTT-AGCCTGTTATCCTACTGCTTAGGGGGTT-AAGCCCTTCATCTTCGATC
*
86746601 TGTTTCCCTACTACTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGT
64 TGTTTCCCTACTACTTAGGGG-TTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGT
* ** * ** * *
86746666 TTAAGGCCCATT-GTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTAT-AATTCAGC
128 TTAAGG-TC-TTAACCTTTGATCTGTTTCCCTACTGCTTAGGGAGACAAGATCTGTAAATTTAGC
* * ** *
86746729 CTGTTACCCTACTGCTTAAGG-GTTTAAGGCTCATCGCCTTTGATCTGCTTCCCTACTGCTTAAG
191 CTGTTACCCTACTGCTT-AGGAGTTTAAGGCCCTTC-ATTTTGATCTGC-TCCCTACTGCTTAGG
86746793 GGT
253 GGT
* ** * ** * * **
86746796 TAAGATCCATCACCTTCGATCTGTT-TCCTTACTGCTTAGGGGGTTAAGATCTATCATCTTCGAT
1 CAAGATCTGTAAATTTAG-CCTGTTATCC-TACTGCTTAGGGGGTTAAGCCCT-TCATCTTCGAT
* * *
86746860 CTGTTTCCCTACTATTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCGTAGGGG
63 CTGTTTCCCTACTACTTA-GGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
* *
86746925 TTTAAGGCTCTTAACCTTTGATCTG-TTCCACCACTGCTTAGGGAGACAAAATCTGTAAATTTAG
127 TTTAAGG-TCTTAACCTTTGATCTGTTTCC-CTACTGCTTAGGGAGACAAGATCTGTAAATTTAG
* *
86746989 CCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCTTTATTTTCGATTTGCTCCACTACTGCTTAGG
190 CCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCTTCATTTT-GATCTGCTCC-CTACTGCTTAGG
*
86747054 GAGA
253 G-GT
* * * *
86747058 CAAGATCTGTAAATTTAGCCTGTTATCGTACTACTTACGGGGTTAAGGCCCTTCGTCTTCGATCT
1 CAAGATCTGTAAATTTAGCCTGTTATCCTACTGCTTAGGGGGTTAA-GCCCTTCATCTTCGATCT
** ** * *
86747123 -ACTCCACTACTACTTAGGGAGACAAGATCTGT-AATTCAGCCTGTTACCCTAATACTTAGGGGT
65 GTTTCC-CTACTACTTAGGG-GTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGT
* * * *
86747186 TTAAGGTCTGTCACCTTCGATCTGTTTCCCTATTACTTAGGGAGACAAGATCTGTAAATTTAGCC
128 TTAAGGTCT-TAACCTTTGATCTGTTTCCCTACTGCTTAGGGAGACAAGATCTGTAAATTTAGCC
* * * * *
86747251 TGTTACCTTACTGCTTA-GAGGGTTAAGGACCTTCGTCTTTGATCTGTTTCCCTACTGCTTAAGG
192 TGTTACCCTACTGCTTAGGA-GTTTAAGGCCCTTCAT-TTTGATCTG-CTCCCTACTGCTT-AGG
86747315 GGT
253 GGT
* * *
86747318 TAAGATTTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 CAAGATCTGTAAATTTAGCCTGTTATCCTACTGCTTAGGG
86747358 AGATAAGGCT
Statistics
Matches: 465, Mismatches: 76, Indels: 42
0.80 0.13 0.07
Matches are distributed among these distances:
259 18 0.04
260 307 0.66
261 123 0.26
262 17 0.04
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (255 bp):
CAAGATCTGTAAATTTAGCCTGTTATCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTCGATCTG
TTTCCCTACTACTTAGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
AGGTCTTAACCTTTGATCTGTTTCCCTACTGCTTAGGGAGACAAGATCTGTAAATTTAGCCTGTT
ACCCTACTGCTTAGGAGTTTAAGGCCCTTCATTTTGATCTGCTCCCTACTGCTTAGGGGT
Found at i:86747545 original size:64 final size:64
Alignment explanation
Indices: 86747440--86747562 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
86747430 GTATCTATGT
*
86747440 TTATGCCAAATAATTAGGATGCTATGATTGAAATGGATCAAATGCTCCTAACTAAATGTAATGC
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATGGATCAAATGCTCCTAACTAAATGTAATGC
* *
86747504 TTATGTCAAATAATTAGGATGCTATGATCGAAAT-GAGTCAAATGCTCCTAACTAGATGT
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATGGA-TCAAATGCTCCTAACTAAATGT
86747563 GTAGAAATGC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 2 0.04
64 53 0.96
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (64 bp):
TTATGCCAAATAATTAGGATGCTATGATCGAAATGGATCAAATGCTCCTAACTAAATGTAATGC
Found at i:86752037 original size:9 final size:10
Alignment explanation
Indices: 86752024--86752069 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
86752014 GGGAAAGTCT
86752024 AATGCAAAT-
1 AATGCAAATG
86752033 AATGC-AATG
1 AATGCAAATG
86752042 CAATGCAAATG
1 -AATGCAAATG
*
86752053 CATG-AAATG
1 AATGCAAATG
86752062 AATGCAAA
1 AATGCAAA
86752070 AGAAAGGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 3 0.10
9 13 0.42
10 11 0.35
11 4 0.13
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (10 bp):
AATGCAAATG
Found at i:86752048 original size:19 final size:19
Alignment explanation
Indices: 86752024--86752069 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
86752014 GGGAAAGTCT
*
86752024 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGAAATG
*
86752042 CAATGCAAATGCATGAAATG
1 -AATGCAAATGAATGAAATG
86752062 AATGCAAA
1 AATGCAAA
86752070 AGAAAGGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGAAATG
Found at i:86754227 original size:15 final size:15
Alignment explanation
Indices: 86754209--86754240 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
86754199 CGAGAATGAT
86754209 AATAATAATAATATA
1 AATAATAATAATATA
*
86754224 AATAATAATAGTATA
1 AATAATAATAATATA
86754239 AA
1 AA
86754241 ACGATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAATAATATA
Found at i:86754310 original size:2 final size:2
Alignment explanation
Indices: 86754303--86754327 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86754293 AGTAGGGAAC
86754303 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
86754328 AAACATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86754766 original size:48 final size:48
Alignment explanation
Indices: 86754707--86754839 Score: 146
Period size: 49 Copynumber: 2.8 Consensus size: 48
86754697 ATTAGTATTG
* *
86754707 AGTATTAAAAGTATATACATAATATAGACAAAAATATATGCATAATGT
1 AGTATTAAAAGTATATACATAATATAGATAAAAATATATGAATAATGT
* * * *
86754755 AGTATTGAAAGTATTTTCATGGAATA-ATATAAAAATATATGAATAATGT
1 AGTATTAAAAGTATATACAT--AATATAGATAAAAATATATGAATAATGT
*
86754804 -GATATTAAAAATATATACATAA-ATAAGATAAAAATA
1 AG-TATTAAAAGTATATACATAATAT-AGATAAAAATA
86754840 AGAAATCAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
46 1 0.01
47 2 0.03
48 28 0.41
49 34 0.49
50 4 0.06
ACGTcount: A:0.53, C:0.04, G:0.11, T:0.32
Consensus pattern (48 bp):
AGTATTAAAAGTATATACATAATATAGATAAAAATATATGAATAATGT
Found at i:86755185 original size:21 final size:22
Alignment explanation
Indices: 86755159--86755200 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
86755149 ATATATAATA
86755159 AAATAACTTAATATA-AATAAG
1 AAATAACTTAATATAGAATAAG
*
86755180 AAATAATTTAATATAGAATAA
1 AAATAACTTAATATAGAATAA
86755201 TAAAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (22 bp):
AAATAACTTAATATAGAATAAG
Found at i:86757746 original size:6 final size:6
Alignment explanation
Indices: 86757719--86757746 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
86757709 ATATTTATAT
86757719 TATTTA TATTTA TATTTA TATTTA TATT
1 TATTTA TATTTA TATTTA TATTTA TATT
86757747 AAATGATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTTA
Found at i:86761164 original size:25 final size:26
Alignment explanation
Indices: 86761132--86761186 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
86761122 TTATTAAATT
*
86761132 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
86761157 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
86761182 A-ATAT
1 ATATAT
86761187 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:86761420 original size:16 final size:16
Alignment explanation
Indices: 86761399--86761434 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
86761389 GATTTGCTAT
86761399 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
86761415 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
86761431 TACA
1 TACA
86761435 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:86762679 original size:23 final size:23
Alignment explanation
Indices: 86762643--86762692 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
86762633 TGGTATTTCT
86762643 ATAATCCGAATACTTCAAAGGAA
1 ATAATCCGAATACTTCAAAGGAA
86762666 ATAATCC-AATTACTTCAAAGGAA
1 ATAATCCGAA-TACTTCAAAGGAA
86762689 ATAA
1 ATAA
86762693 CATTATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 2 0.08
23 24 0.92
ACGTcount: A:0.50, C:0.16, G:0.10, T:0.24
Consensus pattern (23 bp):
ATAATCCGAATACTTCAAAGGAA
Found at i:86764080 original size:24 final size:26
Alignment explanation
Indices: 86764038--86764093 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
86764028 CCCTGTTTCC
86764038 TTTTATTCTCTGTTCATTCTTTTCTT
1 TTTTATTCTCTGTTCATTCTTTTCTT
* *
86764064 TTTTATT-TCT-TTTATTCTTTTGTT
1 TTTTATTCTCTGTTCATTCTTTTCTT
86764088 TATTTA
1 T-TTTA
86764094 CTTTATGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 13 0.48
25 7 0.26
26 7 0.26
ACGTcount: A:0.11, C:0.12, G:0.04, T:0.73
Consensus pattern (26 bp):
TTTTATTCTCTGTTCATTCTTTTCTT
Found at i:86764112 original size:5 final size:5
Alignment explanation
Indices: 86764104--86764175 Score: 144
Period size: 5 Copynumber: 14.4 Consensus size: 5
86764094 CTTTATGTTT
86764104 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
86764154 TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TA
86764176 TTAACATAAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 67 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:86774111 original size:40 final size:40
Alignment explanation
Indices: 86774050--86774129 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
86774040 CTTCAATTGC
*
86774050 ACGTACTTTACCCGGGAAACTTATGTGCATGGATTCTTGT
1 ACGTACTTTACCCGGGAAACTTATGTGCATGAATTCTTGT
86774090 ACGTACTTTACCC-GGACAACTTATGTGCATGAATTCTTGT
1 ACGTACTTTACCCGGGA-AACTTATGTGCATGAATTCTTGT
86774130 GTGCATGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 3 0.08
40 35 0.92
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (40 bp):
ACGTACTTTACCCGGGAAACTTATGTGCATGAATTCTTGT
Found at i:86779248 original size:13 final size:14
Alignment explanation
Indices: 86779222--86779250 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86779212 ACTAACGACG
86779222 AATTAAACCATTAT
1 AATTAAACCATTAT
86779236 AATTAAA-CATTAT
1 AATTAAACCATTAT
86779249 AA
1 AA
86779251 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:86784387 original size:9 final size:9
Alignment explanation
Indices: 86784366--86784599 Score: 67
Period size: 9 Copynumber: 26.0 Consensus size: 9
86784356 TATGTATTAC
*
86784366 GTAAGTTAA
1 GTAAGTTAT
86784375 GTAAGCTT-T
1 GTAAG-TTAT
86784384 GTAAGTTAT
1 GTAAGTTAT
86784393 GTAAGTTAT
1 GTAAGTTAT
* * *
86784402 ATTA-TGAT
1 GTAAGTTAT
* *
86784410 ATACATTTAT
1 GTA-AGTTAT
*
86784420 GTAAGGTAT
1 GTAAGTTAT
86784429 GTAAGTTAT
1 GTAAGTTAT
* *
86784438 GATATGATAT
1 G-TAAGTTAT
* *
86784448 AT-ATTTAT
1 GTAAGTTAT
86784456 GT-A-TTAT
1 GTAAGTTAT
*
86784463 GTAAGTTGT
1 GTAAGTTAT
86784472 GTAAGTTAT
1 GTAAGTTAT
*
86784481 GATAAGATAT
1 G-TAAGTTAT
* *
86784491 AT-ATTTAT
1 GTAAGTTAT
*
86784499 GATATATATTTAT
1 G---TA-AGTTAT
86784512 GT-A-TTAT
1 GTAAGTTAT
* *
86784519 GTTAGTTGT
1 GTAAGTTAT
86784528 GTAAGTTAT
1 GTAAGTTAT
* *
86784537 GATACGATAT
1 G-TAAGTTAT
* *
86784547 AT-ATTTAT
1 GTAAGTTAT
*
86784555 GATATATTTAT
1 G-TA-AGTTAT
*
86784566 GT-A-TTGT
1 GTAAGTTAT
*
86784573 GTAAGTTTT
1 GTAAGTTAT
86784582 GTAAGTTAT
1 GTAAGTTAT
86784591 GTAAGTTAT
1 GTAAGTTAT
86784600 TATATGATAT
Statistics
Matches: 167, Mismatches: 37, Indels: 42
0.68 0.15 0.17
Matches are distributed among these distances:
7 17 0.10
8 24 0.14
9 83 0.50
10 28 0.17
11 8 0.05
13 7 0.04
ACGTcount: A:0.33, C:0.01, G:0.18, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:86784469 original size:34 final size:36
Alignment explanation
Indices: 86784383--86784469 Score: 126
Period size: 36 Copynumber: 2.5 Consensus size: 36
86784373 AAGTAAGCTT
86784383 TGTAAGTTATGTAAGTTATATTATGATATACATTTA
1 TGTAAGTTATGTAAGTTATATTATGATATACATTTA
* *
86784419 TGTAAGGTATGTAAGTTATGA-TATGATATATATTTA
1 TGTAAGTTATGTAAGTTAT-ATTATGATATACATTTA
86784455 TGT-A-TTATGTAAGTT
1 TGTAAGTTATGTAAGTT
86784470 GTGTAAGTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
34 10 0.21
35 1 0.02
36 35 0.74
37 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.47
Consensus pattern (36 bp):
TGTAAGTTATGTAAGTTATATTATGATATACATTTA
Found at i:86784475 original size:43 final size:43
Alignment explanation
Indices: 86784416--86784499 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
86784406 TGATATACAT
*
86784416 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGATAAGATATATATTTATGTA
* *
86784459 TTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATG
1 TTATGTAAGGTATGTAAGTTATGATAAGATATATATTTATG
86784500 ATATATATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (43 bp):
TTATGTAAGGTATGTAAGTTATGATAAGATATATATTTATGTA
Found at i:86784500 original size:56 final size:56
Alignment explanation
Indices: 86784440--86784612 Score: 259
Period size: 56 Copynumber: 3.2 Consensus size: 56
86784430 TAAGTTATGA
86784440 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* *
86784496 TATGATATATATTTATGTATTATGTTAGTTGTGTAAGTTATGATACGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* * *
86784552 TATG--ATATATTTATGTATTGTGTAAGTTTTGTAAGTTATG-TAAG-T-TAT-TA
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
86784602 TATGATATATA
1 TATGATATATA
86784613 ATAAACATTA
Statistics
Matches: 108, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
50 5 0.05
51 3 0.03
52 6 0.06
53 3 0.03
54 33 0.31
56 58 0.54
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.50
Consensus pattern (56 bp):
TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
Found at i:86784504 original size:13 final size:13
Alignment explanation
Indices: 86784486--86784512 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86784476 GTTATGATAA
86784486 GATATATATTTAT
1 GATATATATTTAT
86784499 GATATATATTTAT
1 GATATATATTTAT
86784512 G
1 G
86784513 TATTATGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (13 bp):
GATATATATTTAT
Found at i:86785052 original size:26 final size:27
Alignment explanation
Indices: 86784998--86785052 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
86784988 ATTAATTGCT
**
86784998 AAATATTGAAATATTGAAATATATTTA
1 AAATATTGAAATATTGAAATATAAGTA
86785025 AAATATTGATAA-A-TGAAATATAAGTA
1 AAATATTGA-AATATTGAAATATAAGTA
86785051 AA
1 AA
86785053 TCATTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 13 0.52
27 10 0.40
28 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (27 bp):
AAATATTGAAATATTGAAATATAAGTA
Found at i:86788302 original size:114 final size:115
Alignment explanation
Indices: 86788147--86788479 Score: 363
Period size: 116 Copynumber: 2.9 Consensus size: 115
86788137 ATTTGCGGCA
** *
86788147 TTTTCTCCTAGCGCCGCTAAAGGCAAACCAATTGC-AGCGTTTTAACAT-AAACGCCACTAAAAA
1 TTTTCTCCTAGCGCCGCTAAAGGCAAGTCAATTGCGA-CGTTTTAACCTAAAACGCCACTAAAAA
* *
86788210 TCAAACAAAACGACGCCGTTTTGATATAAATAGAATAA-ACTTTAGTGGCGT
65 TCAAAAAAAACGACGCCGTTTTGATATAAACAGAATAATA-TTTAGTGGCGT
* * *
86788261 TTTTCCCCTAGCGCCGCTAAAGGCAAGTCAATTACGACG-TTTAAGCCTAAAACGCCACTAAAAG
1 TTTTCTCCTAGCGCCGCTAAAGGCAAGTCAATTGCGACGTTTTAA-CCTAAAACGCCACTAAAAA
* * *
86788325 TCCAAAAAAAACGATGGCGTTTTCATATAAACAGAATAATATTTAGTGGCGT
65 T-CAAAAAAAACGACGCCGTTTTGATATAAACAGAATAATATTTAGTGGCGT
* * * * * *
86788377 TTTATCTCCAAGCGCCGCTAAAGGCGAAAGT--ATTGTGGCGTTTTACCCTAAAATGCCACTAAG
1 TTT-TCTCCTAGCGCCGCTAAAGGC--AAGTCAATTGCGACGTTTTAACCTAAAACGCCACTAAA
* * * * *
86788440 AATCCAATAAAACTACACCGTTTTGATATAAACAAAATAA
63 AATCAAAAAAAACGACGCCGTTTTGATATAAACAGAATAA
86788480 CCATGTGGAG
Statistics
Matches: 182, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
113 5 0.03
114 35 0.19
115 16 0.09
116 75 0.41
117 43 0.24
118 4 0.02
119 4 0.02
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.26
Consensus pattern (115 bp):
TTTTCTCCTAGCGCCGCTAAAGGCAAGTCAATTGCGACGTTTTAACCTAAAACGCCACTAAAAAT
CAAAAAAAACGACGCCGTTTTGATATAAACAGAATAATATTTAGTGGCGT
Found at i:86788878 original size:16 final size:16
Alignment explanation
Indices: 86788859--86788910 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
86788849 ATCCTAAACC
86788859 ATTTAATATATATAAA
1 ATTTAATATATATAAA
* **
86788875 ATTT-ATCTATTATACC
1 ATTTAATATA-TATAAA
86788891 ATTTAATATATATAAA
1 ATTTAATATATATAAA
86788907 ATTT
1 ATTT
86788911 TTCTATTATC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 4 0.14
16 20 0.71
17 4 0.14
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTAATATATATAAA
Found at i:86788897 original size:32 final size:32
Alignment explanation
Indices: 86788856--86788919 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
86788846 TAAATCCTAA
86788856 ACCATTTAATATATATAAAATTTATCTATTAT
1 ACCATTTAATATATATAAAATTTATCTATTAT
*
86788888 ACCATTTAATATATATAAAATTTTTCTATTAT
1 ACCATTTAATATATATAAAATTTATCTATTAT
86788920 CTCTTACATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (32 bp):
ACCATTTAATATATATAAAATTTATCTATTAT
Found at i:86790211 original size:41 final size:41
Alignment explanation
Indices: 86790154--86790276 Score: 152
Period size: 41 Copynumber: 3.2 Consensus size: 41
86790144 GTTATATGAA
* *
86790154 TTTTAGCGACGTTTTACAGAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
**
86790195 TTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
*
86790236 TTTTAGCGGCG---T-CA-AAA-CGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
86790270 TTTTAGC
1 TTTTAGC
86790277 TAAAACACCG
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
34 9 0.12
35 14 0.18
36 3 0.04
37 1 0.01
38 1 0.01
41 48 0.63
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
Found at i:86790291 original size:29 final size:29
Alignment explanation
Indices: 86790249--86790305 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
86790239 TAGCGGCGTC
*
86790249 AAAACGCCGCTATTGCTCTGTTTTTAGCT
1 AAAACACCGCTATTGCTCTGTTTTTAGCT
86790278 AAAACACCGCTATTGCTCTGTTTTTAGC
1 AAAACACCGCTATTGCTCTGTTTTTAGC
86790306 GGCATTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (29 bp):
AAAACACCGCTATTGCTCTGTTTTTAGCT
Found at i:86795680 original size:29 final size:29
Alignment explanation
Indices: 86795598--86795696 Score: 162
Period size: 29 Copynumber: 3.4 Consensus size: 29
86795588 TGTGTGTACC
86795598 ATGTGAAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
* *
86795627 ATGTAAAAAGGGGATAGCTTCGGCTATCAA
1 ATGTGAAAA-GGGATAGCTTCGGCTATCGA
*
86795657 ATGTGAAAAGGGATAGCTTTGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
86795686 ATGTGAAAAGG
1 ATGTGAAAAGG
86795697 TTAGGTATAC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 37 0.58
30 27 0.42
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.24
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:86795736 original size:33 final size:33
Alignment explanation
Indices: 86795689--86795818 Score: 188
Period size: 33 Copynumber: 3.9 Consensus size: 33
86795679 CTATCGAATG
** *
86795689 TGAAAAGGTTAGGTATACTTTTTGTATACCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
* *
86795722 TAAAAAGAAAAGGTATACTTTGTGTATACCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
*
86795755 TGAAAAGGAAAGGTATACTTTGTGTGTACCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
* *
86795788 TGAAAAGGAAATGTATACTTTGTGTGTACCA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCA
86795819 CTCAGAAAGA
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (33 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCATA
Found at i:86803445 original size:38 final size:38
Alignment explanation
Indices: 86803403--86803478 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
86803393 TTCAGCAAAG
*
86803403 TTACTTTTCCCAGTTACCTTTGATTATTCCAAAAAAAA
1 TTACTTTTCCCAGTTAACTTTGATTATTCCAAAAAAAA
86803441 TTACTTTTCCCAGTTAACTTTGATTATTCCAAAAAAAA
1 TTACTTTTCCCAGTTAACTTTGATTATTCCAAAAAAAA
86803479 AATTAGTTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (38 bp):
TTACTTTTCCCAGTTAACTTTGATTATTCCAAAAAAAA
Found at i:86818920 original size:29 final size:29
Alignment explanation
Indices: 86818852--86818926 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 29
86818842 AGTTTATATC
* *
86818852 TTTATAATTTTTAAAAAATTAAATTAAAA
1 TTTATAATTTTTAAAAAACTAAAGTAAAA
*
86818881 TTATATCATTTTTAAAAAACTAAAGTAAAA
1 TT-TATAATTTTTAAAAAACTAAAGTAAAA
*
86818911 TTTAAAATTTTATAAA
1 TTTATAATTTT-TAAA
86818927 TTATAAAGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 9 0.23
30 30 0.77
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (29 bp):
TTTATAATTTTTAAAAAACTAAAGTAAAA
Found at i:86820340 original size:9 final size:9
Alignment explanation
Indices: 86820325--86820369 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
86820315 AAATTTAAAA
86820325 ATAAAAATT
1 ATAAAAATT
*
86820334 ATTAAAATT
1 ATAAAAATT
*
86820343 ATTAAAATGT
1 ATAAAAAT-T
86820353 ATAAAAATT
1 ATAAAAATT
86820362 ATAAAAAT
1 ATAAAAAT
86820370 ATTTTTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
9 25 0.76
10 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (9 bp):
ATAAAAATT
Found at i:86820359 original size:19 final size:18
Alignment explanation
Indices: 86820325--86820369 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
86820315 AAATTTAAAA
*
86820325 ATAAAAATTATTAAAATT
1 ATAAAAATTATAAAAATT
*
86820343 ATTAAAATGTATAAAAATT
1 ATAAAAAT-TATAAAAATT
86820362 ATAAAAAT
1 ATAAAAAT
86820370 ATTTTTAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
ATAAAAATTATAAAAATT
Found at i:86820850 original size:16 final size:16
Alignment explanation
Indices: 86820829--86820880 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
86820819 TTTGGTTCGC
86820829 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
86820845 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
*
86820861 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
86820877 TGTA
1 TGTA
86820881 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.29, C:0.00, G:0.33, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:86821137 original size:18 final size:17
Alignment explanation
Indices: 86821116--86821150 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
86821106 TTATTATTAA
*
86821116 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
86821134 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
86821151 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:86821257 original size:18 final size:17
Alignment explanation
Indices: 86821236--86821270 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
86821226 TTATTATTAA
*
86821236 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
86821254 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
86821271 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:86821312 original size:120 final size:120
Alignment explanation
Indices: 86821099--86821481 Score: 757
Period size: 120 Copynumber: 3.2 Consensus size: 120
86821089 ATCATATTTA
86821099 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
86821164 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
86821219 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
86821284 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
86821339 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
86821404 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
86821459 AACATAATAATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
86821482 AACTTGAAAA
Statistics
Matches: 262, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 262 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:86821377 original size:18 final size:17
Alignment explanation
Indices: 86821356--86821390 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
86821346 TTATTATTAA
*
86821356 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
86821374 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
86821391 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:86824959 original size:13 final size:13
Alignment explanation
Indices: 86824941--86824991 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
86824931 TTTTAAACCA
86824941 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
**
86824954 ACTTTTTC-ACGGC
1 AC-TTTTCAAAAGC
*
86824967 ACTTTTCATAAGC
1 ACTTTTCAAAAGC
*
86824980 ACTTTTTAAAAG
1 ACTTTTCAAAAG
86824992 TATTGCCAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
12 5 0.17
13 19 0.66
14 5 0.17
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:86829793 original size:50 final size:50
Alignment explanation
Indices: 86829715--86829818 Score: 172
Period size: 50 Copynumber: 2.1 Consensus size: 50
86829705 GAAGATGAGG
* *
86829715 GAGTCGTTCTAGAATCTGAAGGACCGGATAAAGAAGAAAATTGACAATTA
1 GAGTCGTTCCAGAATCTAAAGGACCGGATAAAGAAGAAAATTGACAATTA
* *
86829765 GAGTCGTTCCAGAATCTAAAGGATCGGATAAAGAAGAAAATTGACAATTG
1 GAGTCGTTCCAGAATCTAAAGGACCGGATAAAGAAGAAAATTGACAATTA
86829815 GAGT
1 GAGT
86829819 ACTAGGCACC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (50 bp):
GAGTCGTTCCAGAATCTAAAGGACCGGATAAAGAAGAAAATTGACAATTA
Found at i:86843715 original size:46 final size:47
Alignment explanation
Indices: 86843615--86843785 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 47
86843605 ATTGTGAGCT
* * * * * *
86843615 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA-AGCC
86843663 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-AAGCC
* *
86843709 AGTGTAAGA-CATGTCTAGGACAT-GCATCGG-CTACGAGATG-GGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGAAGCC
86843753 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
86843786 ATCCTACCCC
Statistics
Matches: 109, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
44 12 0.11
45 15 0.14
46 59 0.54
47 14 0.13
48 9 0.08
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAAGCC
Found at i:86851680 original size:57 final size:57
Alignment explanation
Indices: 86851578--86851709 Score: 178
Period size: 57 Copynumber: 2.3 Consensus size: 57
86851568 TTAATTCATA
* *
86851578 TAATAATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATT
1 TAATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTAT-TT
* * *
86851636 TAATAATAATTA-AGTTAA-AATATGGTTAAATTATTTATTTTTTTATTAAATTATTT
1 TAATAATAATTATA-TTAAGAATATGATTAAATTATATATTATTTTATTAAATTATTT
*
86851692 TAATAATAATTTTATTAA
1 TAATAATAATTATATTAA
86851710 AATTTAATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
56 17 0.26
57 33 0.50
58 16 0.24
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (57 bp):
TAATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTATTT
Found at i:86851899 original size:16 final size:16
Alignment explanation
Indices: 86851878--86851946 Score: 102
Period size: 16 Copynumber: 4.3 Consensus size: 16
86851868 TTGAATTACT
86851878 AATTATAGCTCTATTC
1 AATTATAGCTCTATTC
86851894 AATTATAGCTCTATTC
1 AATTATAGCTCTATTC
*
86851910 AATTATAGCTTTATTC
1 AATTATAGCTCTATTC
* *
86851926 AATTACAGCCCTATTC
1 AATTATAGCTCTATTC
*
86851942 CATTA
1 AATTA
86851947 CAGTGAACCA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (16 bp):
AATTATAGCTCTATTC
Found at i:86855960 original size:21 final size:22
Alignment explanation
Indices: 86855934--86855996 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
86855924 AAAATAAGTT
*
86855934 TTATTTTAT-AATTTTTTAATA
1 TTATTTTATAAATTTTTTAAGA
* * *
86855955 TTATTTGATAAAATTTTTAAGG
1 TTATTTTATAAATTTTTTAAGA
86855977 TT-TTTTATAAATATTTTTAA
1 TTATTTTATAAAT-TTTTTAA
86855997 AAATTATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
TTATTTTATAAATTTTTTAAGA
Found at i:86856083 original size:27 final size:26
Alignment explanation
Indices: 86856016--86856109 Score: 75
Period size: 27 Copynumber: 3.5 Consensus size: 26
86856006 ATTTTTCAAA
*
86856016 AAAATTTAAATTATTTTTACTATT-T-T
1 AAAATTAAAATTA-TTTTA-TATTATAT
*
86856042 AAATATAAAATATTATCTTTATATTATAT
1 AAA-ATTAAA-ATTAT-TTTATATTATAT
* *
86856071 AAAATTAAAATTAATTATATATTAAAT
1 AAAATTAAAATT-ATTTTATATTATAT
*
86856098 AAAAATAAAATT
1 AAAATTAAAATT
86856110 CAGTTCAATT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
26 3 0.05
27 33 0.59
28 16 0.29
29 4 0.07
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (26 bp):
AAAATTAAAATTATTTTATATTATAT
Found at i:86874979 original size:31 final size:30
Alignment explanation
Indices: 86874942--86875011 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 30
86874932 TGGGTCCAAT
86874942 TTGGTACTCAAACTTGACACTTTTTCTTAA
1 TTGGTACTCAAACTTGACACTTTTTCTTAA
*
86874972 TTGGGTACTCAAACTTGACATTTTTTCTTAA
1 TT-GGTACTCAAACTTGACACTTTTTCTTAA
86875003 GTTGGTACT
1 -TTGGTACT
86875012 TAATCTTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
30 2 0.05
31 33 0.89
32 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.44
Consensus pattern (30 bp):
TTGGTACTCAAACTTGACACTTTTTCTTAA
Found at i:86875260 original size:32 final size:32
Alignment explanation
Indices: 86875219--86875295 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
86875209 TTAATATAAC
* * *
86875219 ATTTGGTACCTGAATTTGACACTTTTTTCTTA
1 ATTTGGTACCTAAACTTGACACTTTTTTCCTA
* *
86875251 ATTTGGTACCTAAACTTGGCATTTTTTTCCTA
1 ATTTGGTACCTAAACTTGACACTTTTTTCCTA
*
86875283 ATTTGGTAGCTAA
1 ATTTGGTACCTAA
86875296 GCTTTTTCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (32 bp):
ATTTGGTACCTAAACTTGACACTTTTTTCCTA
Found at i:86875741 original size:60 final size:60
Alignment explanation
Indices: 86875677--86875790 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
86875667 AACCGAATAA
* *
86875677 AAAAAAAGATTAGGTACCAAATTAGAAAAAAGAGTCAAGTTT-AGGTACCAAATTAAACAT
1 AAAAAAAGATTAAGTACCAAATTAAAAAAAAGAGTCAAGTTTGA-GTACCAAATTAAACAT
* * * **
86875737 AAAAAATGATTAAGTACTAACTTAAAAAAAATTGTCAAGTTTGAGTACCAAATT
1 AAAAAAAGATTAAGTACCAAATTAAAAAAAAGAGTCAAGTTTGAGTACCAAATT
86875791 GTGTCATTCC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
60 45 0.98
61 1 0.02
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.25
Consensus pattern (60 bp):
AAAAAAAGATTAAGTACCAAATTAAAAAAAAGAGTCAAGTTTGAGTACCAAATTAAACAT
Found at i:86882920 original size:21 final size:21
Alignment explanation
Indices: 86882894--86882934 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86882884 ATCTGCTCAA
* *
86882894 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
86882915 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
86882935 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:86898049 original size:205 final size:203
Alignment explanation
Indices: 86897669--86898454 Score: 1148
Period size: 205 Copynumber: 3.8 Consensus size: 203
86897659 TAGGCCGCAG
* *
86897669 CATAACAGATCTGGCCTTCAGATGTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGT
1 CATAGCAGATCTCGCCTTCAGATGTT-TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGT
*
86897734 TTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATG-AAGCAAATCT
65 TTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGA-GAAAGCAAATCT
** * *
86897798 AAGATGATTTGTCGTCTCTGTATTGTCAGATAACGAATCGAAGTTTGGCATCTTCACTTTGATGG
129 AAGATGATTTGAAGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGG
86897863 AGAGCAGACA
194 AGAGCAGACA
86897873 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
86897938 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCT
64 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCT
* *
86898003 AAGATGATTTGAAGTTTCTGTATCGTCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGG
129 AAGATGATTTGAAGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGG
*
86898068 AGAGCAGATA
194 AGAGCAGACA
* * * *
86898078 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGTAGATCCAAGATGGCTTGACATTCTTGTG
1 CATAGCAGATCTCGCCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
* *
86898143 TTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTTACGTGATTACGAGAAAGCAAATCT
64 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCT
* * *
86898208 AAGATGATTTGTCA-TCTCTGTATCGTCAGAGAACAAATTGAAGTTTGGCATCTTCACTTTGATG
129 AAGATGATTTG-AAGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATG
86898272 GAGAGCAGACA
193 GAGAGCAGACA
* * * *
86898283 CATAGCAGATCTCACCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTATG
1 CATAGCAGATCTCGCCTTCAGATGTTTA--CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
* * * * * **
86898348 CTTACAAGGAGCAAATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCT
64 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCT
* * * *
86898412 AAGATGATTTGGCA-TCTCTGTATTGTCAGGGAACAAATCGAAG
129 AAGATGATTT-GAAGTCTCTGTATCGTCAGAGAACGAATCGAAG
86898455 AAATAGATTT
Statistics
Matches: 533, Mismatches: 42, Indels: 14
0.90 0.07 0.02
Matches are distributed among these distances:
203 1 0.00
204 102 0.19
205 429 0.80
206 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (203 bp):
CATAGCAGATCTCGCCTTCAGATGTTTACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTT
TACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAA
GATGATTTGAAGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAG
AGCAGACA
Found at i:86898661 original size:133 final size:133
Alignment explanation
Indices: 86898524--86898896 Score: 622
Period size: 133 Copynumber: 2.8 Consensus size: 133
86898514 TTCTTGAGTT
* *
86898524 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCACCCCTGTGCTTATAGGGAACAAGTTGAAAAAC
1 ACAGTAAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAAC
* *
86898589 AGCAGATTTGGCATCCCTATGCTTATAGGGAATAGATCGAAGATAGCAGATCTGAAATTCCTGTG
66 AGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGAAATTCCTGTG
86898654 CTC
131 CTC
* *
86898657 ACAGTAAAGCAGATCAAAGATTTCAGCATGGCATTCCTGTGCTTATAGGGAACAAGTTGAAAAAC
1 ACAGTAAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAAC
*
86898722 AGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTG
66 AGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGAAATTCCTGTG
*
86898787 CTT
131 CTC
* * * *
86898790 ACAGTAAAGCAGATCGAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTG-AAGAT
1 ACAGTAAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAAC
*
86898854 AGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGA
66 AGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGA
86898897 ACTTAAAACT
Statistics
Matches: 225, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
132 45 0.20
133 180 0.80
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (133 bp):
ACAGTAAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAAC
AGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGAAATTCCTGTG
CTC
Found at i:86898785 original size:44 final size:44
Alignment explanation
Indices: 86898552--86898896 Score: 254
Period size: 44 Copynumber: 7.8 Consensus size: 44
86898542 GATTTCAGCA
* * * * *
86898552 TGGCACCCCTGTGCTTATAGGGAACA-AGTTGAAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAGA-TCG-AAGATAGCAGATC
* *
86898597 TGGCATCCCTATGCTTATAGGGAATAGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
** * * * ** * **
86898641 TGAAATTCCTGTGCTCACAGTAAAGCAGATCAAAGATTTCAG--C
1 TGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAGATC
* * * * *
86898684 ATGGCATTCCTGTGCTTATAGGGAACA-AGTTGAAAAACAGCAGATT
1 -TGGCATCCCTGTGCTTATAGGGAACAGA-TCG-AAGATAGCAGATC
86898730 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
* * * ** ***
86898774 TGACATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTTAG--C
1 TGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAGATC
* * *
86898817 ATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 -TGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATC
*
86898862 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGA
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGA
86898897 ACTTAAAACT
Statistics
Matches: 229, Mismatches: 57, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
42 2 0.01
43 16 0.07
44 129 0.56
45 80 0.35
46 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
Found at i:86899337 original size:22 final size:22
Alignment explanation
Indices: 86899320--86899376 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
86899310 GGGAGGGGGG
86899320 ATCGATGGTATTTTGAGGAAGA
1 ATCGATGGTATTTTGAGGAAGA
* *
86899342 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATGGTATTTTGAGGA-AGA
* *
86899365 ATAGATTGTATT
1 ATCGATGGTATT
86899377 AGAGGGGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 17 0.55
23 14 0.45
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.37
Consensus pattern (22 bp):
ATCGATGGTATTTTGAGGAAGA
Done.