Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 262 of 344
Found at i:87301251 original size:27 final size:27
Alignment explanation
Indices: 87301220--87301397 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87301210 TAAATTGTAC
87301220 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
87301247 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87301273 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
87301301 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
87301329 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87301356 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
87301383 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87301398 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:87301334 original size:82 final size:81
Alignment explanation
Indices: 87301221--87301376 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87301211 AAATTGTACA
* *
87301221 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
87301285 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
87301302 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
87301367 TGCGAGTTGA
65 TGCGAATTGA
87301377 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87301388 original size:82 final size:81
Alignment explanation
Indices: 87301217--87301397 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
87301207 GATTAAATTG
* *
87301217 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
87301282 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
87301298 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
87301362 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87301380 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87301398 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87314667 original size:6 final size:6
Alignment explanation
Indices: 87314653--87314685 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
87314643 GTAATAATAA
87314653 TTATATT TTATTT TTATTT TTATTT TTATTT TT
1 TTAT-TT TTATTT TTATTT TTATTT TTATTT TT
87314686 GAAATAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 22 0.85
7 4 0.15
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:87314745 original size:49 final size:49
Alignment explanation
Indices: 87314692--87314790 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
87314682 TTTTGAAATA
87314692 ATTATAATAATTTTTATTTTTATTTGCATCTAAATTGTTTTATGGGAAT
1 ATTATAATAATTTTTATTTTTATTTGCATCTAAATTGTTTTATGGGAAT
*
87314741 ATTATAATAATTTTTATTTTTATTTGCATCTGAATTGTTTTATGGGAAT
1 ATTATAATAATTTTTATTTTTATTTGCATCTAAATTGTTTTATGGGAAT
87314790 A
1 A
87314791 ACATAACTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.55
Consensus pattern (49 bp):
ATTATAATAATTTTTATTTTTATTTGCATCTAAATTGTTTTATGGGAAT
Found at i:87318718 original size:66 final size:66
Alignment explanation
Indices: 87318607--87318734 Score: 170
Period size: 66 Copynumber: 1.9 Consensus size: 66
87318597 AAGCTCTTAC
* * * *
87318607 TGGAGTTCATCATATTTTCTTGTTGCCTTTGCTTCCCTCGCTGCTGCCT-TCGCTTTAAGTTGGA
1 TGGAGTTCATCATATTTTCTTGTAGCATCTGCTTCCCTCGATGCTGCCTCT-GCTTTAAGTTGGA
87318671 GT
65 GT
* *
87318673 TGGAGTTCATCATATTTTCTT-TGAGCATCTGCTTCTCTCGATGCTGCCTCTGCTTTGAGTTG
1 TGGAGTTCATCATATTTTCTTGT-AGCATCTGCTTCCCTCGATGCTGCCTCTGCTTTAAGTTG
87318735 AGCAATTTGC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
65 1 0.02
66 52 0.96
67 1 0.02
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (66 bp):
TGGAGTTCATCATATTTTCTTGTAGCATCTGCTTCCCTCGATGCTGCCTCTGCTTTAAGTTGGAG
T
Found at i:87321551 original size:37 final size:37
Alignment explanation
Indices: 87321493--87321673 Score: 292
Period size: 37 Copynumber: 4.9 Consensus size: 37
87321483 TAGCTCGAAT
* *
87321493 AATCCCCACACGTAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
87321530 AATCTCCACACGTAGTCATCGGGTCTTACCCGGAC-A
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
87321566 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
87321603 AATCTCCACATGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
87321640 AATCTCCACACGTAGTCATCAGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
87321674 ATATATTTCC
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
36 35 0.26
37 100 0.74
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:87321618 original size:73 final size:74
Alignment explanation
Indices: 87321491--87321673 Score: 305
Period size: 73 Copynumber: 2.5 Consensus size: 74
87321481 TTTAGCTCGA
* *
87321491 ATAATCCCCACACGTAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCT
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCT
87321556 TACCCGGAC
66 TACCCGGAC
* * *
87321565 A-AATCTCCACACATAGTCATCGGGTCTTACCCGGACATAATCTCCACATGTAGTCATCGGGTCT
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCT
87321629 TACCCGGAC
66 TACCCGGAC
*
87321638 ATAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
87321674 ATATATTTCC
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
73 68 0.67
74 33 0.33
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (74 bp):
ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCT
TACCCGGAC
Found at i:87321865 original size:48 final size:48
Alignment explanation
Indices: 87321805--87322108 Score: 446
Period size: 48 Copynumber: 6.2 Consensus size: 48
87321795 CGGCCACAAT
*
87321805 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
87321853 ATATACATATCTCATACATATTTCTCATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* **
87321901 ATATATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ------ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
87321955 ATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
87322003 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
87322051 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
87322099 ACATATATAT
1 ATATACATAT
87322109 ATTTATCTTG
Statistics
Matches: 230, Mismatches: 20, Indels: 12
0.88 0.08 0.05
Matches are distributed among these distances:
48 187 0.81
54 43 0.19
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:87321920 original size:102 final size:101
Alignment explanation
Indices: 87321803--87322116 Score: 494
Period size: 102 Copynumber: 3.1 Consensus size: 101
87321793 TTCGGCCACA
* * *
87321803 ATATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ATATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCAT
* *
87321868 ACATATTTCTCATTAGCCATTCGGATTTACCACATAT
66 ACATATTTCACATTAGCCATTCGGCTTTACCACA-AT
*
87321905 ATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ATATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
87321970 ACATATTTCACATTCGCCATTCGGCTTTACCAC---
66 ACATATTTCACATTAGCCATTCGGCTTTACCACAAT
87322003 --ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ATATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
87322066 ACATATTTCACACTAGCCATTCGGCTTTACCACACAT
66 ACATATTTCACATTAGCCATTCGGCTTTACCACA-AT
*
87322103 ATATATATTTATCT
1 ATATATATATATCT
87322117 TGTACATCAA
Statistics
Matches: 195, Mismatches: 11, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
96 93 0.48
102 102 0.52
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (101 bp):
ATATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCAT
ACATATTTCACATTAGCCATTCGGCTTTACCACAAT
Found at i:87327078 original size:15 final size:15
Alignment explanation
Indices: 87327055--87327093 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
87327045 CTTGGCTTGC
* *
87327055 ATTTTGAAATGCCAA
1 ATTTAGAAATGCAAA
87327070 ATTTAGAAATGCAAA
1 ATTTAGAAATGCAAA
87327085 ATTTAGAAA
1 ATTTAGAAA
87327094 AGTTTGTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.31
Consensus pattern (15 bp):
ATTTAGAAATGCAAA
Found at i:87327522 original size:35 final size:35
Alignment explanation
Indices: 87327483--87327549 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
87327473 TTTTTATATT
87327483 CTTTAAATGTTTATGTAAGTTATGATAATCATAAA
1 CTTTAAATGTTTATGTAAGTTATGATAATCATAAA
*
87327518 CTTTAAATGTTTATGTAAGTTATGATTATCAT
1 CTTTAAATGTTTATGTAAGTTATGATAATCAT
87327550 CTTTAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (35 bp):
CTTTAAATGTTTATGTAAGTTATGATAATCATAAA
Found at i:87327869 original size:16 final size:17
Alignment explanation
Indices: 87327839--87327873 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
87327829 TTTTTCTCGA
87327839 TTTTATTTTGCTATTTT
1 TTTTATTTTGCTATTTT
*
87327856 TTTTATTTT-TTATTTT
1 TTTTATTTTGCTATTTT
87327872 TT
1 TT
87327874 AAGAATGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.11, C:0.03, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTTATTTTGCTATTTT
Found at i:87328076 original size:13 final size:14
Alignment explanation
Indices: 87328058--87328086 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
87328048 ATTATAAAAG
87328058 TTAGTTAC-AAATA
1 TTAGTTACAAAATA
87328071 TTAGTTACAAAATA
1 TTAGTTACAAAATA
87328085 TT
1 TT
87328087 TTAAACAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (14 bp):
TTAGTTACAAAATA
Found at i:87330069 original size:26 final size:27
Alignment explanation
Indices: 87330023--87330079 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
87330013 TGCACAAGCT
*
87330023 TCACTTCTCTGTCTTTTTCTCTCTTTA
1 TCACTTCTCTGTCTTTATCTCTCTTTA
* *
87330050 TCAC-TCTCTGT-TCTTATCTCTGTTTC
1 TCACTTCTCTGTCT-TTATCTCTCTTTA
87330076 TCAC
1 TCAC
87330080 CTTGAGAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 21 0.81
27 4 0.15
ACGTcount: A:0.09, C:0.32, G:0.05, T:0.54
Consensus pattern (27 bp):
TCACTTCTCTGTCTTTATCTCTCTTTA
Found at i:87331094 original size:20 final size:20
Alignment explanation
Indices: 87331069--87331145 Score: 67
Period size: 20 Copynumber: 4.1 Consensus size: 20
87331059 GCAGCAGACG
87331069 TTGGGGAAAAACTAAGGGAT
1 TTGGGGAAAAACTAAGGGAT
**
87331089 TTGGGG---AA-T--TTGAT
1 TTGGGGAAAAACTAAGGGAT
87331103 TTGGGGAAAAAACTAAGGGAT
1 TTGGGG-AAAAACTAAGGGAT
* *
87331124 TTGGAGAAAAAATAAGGGAT
1 TTGGGGAAAAACTAAGGGAT
87331144 TT
1 TT
87331146 TAGGAAACTG
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
14 9 0.20
16 1 0.02
17 2 0.05
18 2 0.05
19 1 0.02
20 21 0.48
21 8 0.18
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (20 bp):
TTGGGGAAAAACTAAGGGAT
Found at i:87331124 original size:21 final size:20
Alignment explanation
Indices: 87331100--87331145 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
87331090 TGGGGAATTT
*
87331100 GATTTGGGGAAAAAACTAAGG
1 GATTTGGAGAAAAAA-TAAGG
87331121 GATTTGGAGAAAAAATAAGG
1 GATTTGGAGAAAAAATAAGG
87331141 GATTT
1 GATTT
87331146 TAGGAAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.43, C:0.02, G:0.30, T:0.24
Consensus pattern (20 bp):
GATTTGGAGAAAAAATAAGG
Found at i:87331152 original size:20 final size:20
Alignment explanation
Indices: 87331107--87331152 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
87331097 TTTGATTTGG
87331107 GGAAAAAACTAAGGGATTT-
1 GGAAAAAACTAAGGGATTTA
*
87331126 GGAGAAAAAATAAGGGATTTTA
1 GGA-AAAAACTAAGGGA-TTTA
87331148 GGAAA
1 GGAAA
87331153 CTGATTTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 3 0.13
20 12 0.52
21 5 0.22
22 3 0.13
ACGTcount: A:0.50, C:0.02, G:0.28, T:0.20
Consensus pattern (20 bp):
GGAAAAAACTAAGGGATTTA
Found at i:87331158 original size:55 final size:56
Alignment explanation
Indices: 87331069--87331176 Score: 155
Period size: 55 Copynumber: 1.9 Consensus size: 56
87331059 GCAGCAGACG
* * * **
87331069 TTGGGGAAAAACTAAGGGATTTGGGGAATTTGATTTGGGG-AAAAAACTAAGGGAT
1 TTGGAGAAAAAATAAGGGATTTGAGGAAACTGATTTGGGGAAAAAAACTAAGGGAT
*
87331124 TTGGAGAAAAAATAAGGGATTTTAGGAAACTGATTTGGGGAAAAAAACTAAGG
1 TTGGAGAAAAAATAAGGGATTTGAGGAAACTGATTTGGGGAAAAAAACTAAGG
87331177 CTATCAAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
55 34 0.74
56 12 0.26
ACGTcount: A:0.41, C:0.04, G:0.31, T:0.24
Consensus pattern (56 bp):
TTGGAGAAAAAATAAGGGATTTGAGGAAACTGATTTGGGGAAAAAAACTAAGGGAT
Found at i:87331333 original size:41 final size:41
Alignment explanation
Indices: 87331225--87331334 Score: 125
Period size: 40 Copynumber: 2.7 Consensus size: 41
87331215 AGTCGCGACA
* * * *
87331225 TTTATGGGAAAAACGCCGTTATTGCTTTATCTTTAGCAGCG
1 TTTATGAGAAAAATGCCGCTATTGTTTTATCTTTAGCAGCG
* * *
87331266 TTTATGAG-AAAATAG-CGCTATTGTTTTATCTTTTGTAGTG
1 TTTATGAGAAAAAT-GCCGCTATTGTTTTATCTTTAGCAGCG
*
87331306 TTTATGAGAAAAATGCCGCTATAGTTTTA
1 TTTATGAGAAAAATGCCGCTATTGTTTTA
87331335 ACCTTTTGCG
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
40 33 0.57
41 25 0.43
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (41 bp):
TTTATGAGAAAAATGCCGCTATTGTTTTATCTTTAGCAGCG
Found at i:87336356 original size:31 final size:31
Alignment explanation
Indices: 87336320--87336381 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
87336310 AATACAAAGA
87336320 ATTCTTTCAATACTCAAATACA-TTTCATTCT
1 ATTCTTTCAATACTC-AATACAGTTTCATTCT
*
87336351 ATTCTTTCAATACTCAGTACAGTTTCATTCT
1 ATTCTTTCAATACTCAATACAGTTTCATTCT
87336382 TTCAGTACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 5 0.17
31 24 0.83
ACGTcount: A:0.29, C:0.23, G:0.03, T:0.45
Consensus pattern (31 bp):
ATTCTTTCAATACTCAATACAGTTTCATTCT
Found at i:87351219 original size:12 final size:13
Alignment explanation
Indices: 87351187--87351217 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
87351177 ATACATGTTA
87351187 AATATTTAAATTT
1 AATATTTAAATTT
87351200 AA-ATTTAAATTT
1 AATATTTAAATTT
87351212 AATATT
1 AATATT
87351218 AATATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATATTTAAATTT
Found at i:87354931 original size:14 final size:15
Alignment explanation
Indices: 87354909--87354938 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
87354899 GAATATCAAA
87354909 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
87354924 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
87354938 A
1 A
87354939 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:87355333 original size:13 final size:13
Alignment explanation
Indices: 87355297--87355333 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
87355287 TTAGGCAGGG
87355297 CACGCCCGTGTGA
1 CACGCCCGTGTGA
* *
87355310 CACACCTGTGTGA
1 CACGCCCGTGTGA
87355323 CACGCCCGTGT
1 CACGCCCGTGT
87355334 ACGATTACTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.16, C:0.38, G:0.27, T:0.19
Consensus pattern (13 bp):
CACGCCCGTGTGA
Found at i:87362434 original size:19 final size:19
Alignment explanation
Indices: 87362397--87362434 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
87362387 ACCTGTCAGA
*
87362397 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
87362416 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
87362435 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:87365808 original size:48 final size:48
Alignment explanation
Indices: 87365674--87365800 Score: 175
Period size: 48 Copynumber: 2.6 Consensus size: 48
87365664 CTGGGCTATC
*
87365674 GGCATCGATATCTGATCCCATGTAAGACCATGTCTGGGACAAAGCATT
1 GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGACAAAGCATT
* * * * *
87365722 GGCATTGATCTACGATCCCACGTAAGACCATGTCTGGGA-AATGGCATT
1 GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGACAA-AGCATT
*
87365770 GGCATCAATATATGATCCCATGTAAGACCAT
1 GGCATCGATATATGATCCCATGTAAGACCAT
87365801 ATTTGGGATA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
47 2 0.03
48 65 0.97
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (48 bp):
GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGACAAAGCATT
Found at i:87365823 original size:48 final size:47
Alignment explanation
Indices: 87365674--87365823 Score: 158
Period size: 48 Copynumber: 3.1 Consensus size: 47
87365664 CTGGGCTATC
*
87365674 GGCATCGATATCTGATCCCATGTAAGACCATGTCTGGGACAA-AGCATT
1 GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGA-AAGA-CATT
* * * * *
87365722 GGCATTGATCTACGATCCCACGTAAGACCATGTCTGGGAAATGGCATT
1 GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGAAA-GACATT
* * * *
87365770 GGCATCAATATATGATCCCATGTAAGACCATATTTGGGATACGACATT
1 GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGA-AAGACATT
*
87365818 AGCATC
1 GGCATC
87365824 CTACCATGTG
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
47 2 0.02
48 80 0.96
49 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (47 bp):
GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGAAAGACATT
Found at i:87366945 original size:38 final size:38
Alignment explanation
Indices: 87366860--87367033 Score: 181
Period size: 38 Copynumber: 4.5 Consensus size: 38
87366850 AAATCCAGTC
* * * * *
87366860 ACCAGCACAAAACTTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
87366900 ACTAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
87366938 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATATT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
* *
87366976 ACCAGC-GTGAAGCCTGCGGGATTTAACCCGGGTATAAT
1 ACCAGCACT-AAGCCTGCGGGATTTAACCCGGATATAAT
*
87367014 TCCAGCA-TATAGCCTGCGGG
1 ACCAGCACTA-AGCCTGCGGG
87367034 TCTTTAAGCC
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
37 1 0.01
38 91 0.81
39 5 0.04
40 16 0.14
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:87372596 original size:46 final size:45
Alignment explanation
Indices: 87372447--87372714 Score: 242
Period size: 46 Copynumber: 5.8 Consensus size: 45
87372437 AGGGTATAAT
*
87372447 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCACATATCCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-TT-ACATCT-CG-A
* *
87372498 -CCGATGCATGTTCTAGACATGTCTTACACTAGC--ACATCTCGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCG-A
*
87372541 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
* * *
87372586 GGCCGATGCATATCCCAGACATGTCTTACACTAGCTCT-CGTCTCAA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA
* * * * *
87372632 TGCCGATGCCATGTCCCAAACATGGTCATACACTGGCTCT-CATAAT-GTG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCG-A
*
87372681 GCCGATGCATGTCCTAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
87372715 ACACACACAT
Statistics
Matches: 185, Mismatches: 23, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.02
44 35 0.19
45 1 0.01
46 65 0.35
47 25 0.14
48 36 0.19
49 13 0.07
50 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
Found at i:87372688 original size:94 final size:94
Alignment explanation
Indices: 87372443--87372717 Score: 325
Period size: 94 Copynumber: 2.9 Consensus size: 94
87372433 ACATAGGGTA
* * *
87372443 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCACATATCCGT-ACCGATGCAT
1 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TTCATA-AT-CGTGGCCGATGCAT
*
87372507 GTTCTAGACATGTCTTACACTAGCACATCTCG
63 GTCCTAGACATGTCTTACACTAGCACATCTCG
* * *
87372539 T-A-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCGAGGCCGATGCATAT
1 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATAATCGTGGCCGATGCATGT
* *
87372599 CCCAGACATGTCTTACACTAGCTC-TCGTC-
65 CCTAGACATGTCTTACACTAGCACATC-TCG
* *
87372628 TCAATGCCGATGCCATGTCCCAAACATGGTCATACACTGGCTCTCATAAT-GTGGCCGATGCATG
1 T-AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATAATCGTGGCCGATGCATG
87372692 TCCTAGACATGTCTTACACTAGCACA
64 TCCTAGACATGTCTTACACTAGCACA
87372718 CACACATCGC
Statistics
Matches: 152, Mismatches: 16, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
89 5 0.03
90 34 0.22
91 3 0.02
92 21 0.14
93 27 0.18
94 58 0.38
95 3 0.02
96 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (94 bp):
TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATAATCGTGGCCGATGCATGTC
CTAGACATGTCTTACACTAGCACATCTCG
Found at i:87378915 original size:46 final size:47
Alignment explanation
Indices: 87378767--87379030 Score: 222
Period size: 46 Copynumber: 5.6 Consensus size: 47
87378757 GGGTATAATA
* * * * *
87378767 CCGATGCCATGTCCTAGGCATGGTCTTACACTGCCTCTCACATATCCATG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATCTCGATG
* * * *
87378817 CTGATGCATGTTCCAAACATGTCTTACACTAG--C-ACATCTCG-TAG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGAT-G
* * *
87378861 CCGATGCATGTCCTAAACATGTCTTACACTGGCT-TACATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGATG
* * * *
87378907 CCGATGCATGTCCCAGACATATCTTACACTAGCTCT-CGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGATG
*
87378953 CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-G-TGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACAT-CTCGAT-G
* *
87379001 CCGATACATGTCCCAGACATGTCCTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
87379031 AGCACACACA
Statistics
Matches: 176, Mismatches: 28, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 35 0.20
46 62 0.35
47 30 0.17
48 32 0.18
49 11 0.06
50 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGATG
Found at i:87379005 original size:94 final size:92
Alignment explanation
Indices: 87378767--87379036 Score: 275
Period size: 94 Copynumber: 2.9 Consensus size: 92
87378757 GGGTATAATA
* * * * * *
87378767 CCGATGCCATGTCCTAGGCATGGTCTTACACTGCCTCTCACATATCCAT-GCTGATGCATGTTCC
1 CCGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCATA-AT-CGTGGCCGATGCATGTCCC
*
87378831 AAACATGTCTTACACTAGCACATCTCGTAG
63 AGACATGTCTTACACTAGCACATCTCGTAG
* * *
87378861 CCGATGCATGTCCTAAACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCAG
1 CCGATGCATGTCCTAGACATGGTCTTACACTGGCTCT-CATAATCGTGGCCGATGCATGTCCCAG
* *
87378923 ACATATCTTACACTAGCTC-TCGTC-TCAATG
65 ACATGTCTTACACTAGCACATC-TCGT--A-G
* *
87378953 CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATACATGTCCCAG
1 CCGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCATGTCCCAG
*
87379017 ACATGTCCTACACTAGCACA
65 ACATGTCTTACACTAGCACA
87379037 CACACATCGC
Statistics
Matches: 145, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
89 4 0.03
90 34 0.23
91 2 0.01
92 22 0.15
93 24 0.17
94 57 0.39
95 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (92 bp):
CCGATGCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACATCTCGTAG
Found at i:87387485 original size:1 final size:1
Alignment explanation
Indices: 87387479--87387504 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
87387469 CAAATTTGGC
87387479 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
87387505 GCAGTGTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:87389123 original size:19 final size:21
Alignment explanation
Indices: 87389083--87389123 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
87389073 TATGTATTAT
*
87389083 TCTTTTTGCATTCATTTTTAC
1 TCTTTTTGCATTCATATTTAC
87389104 TCTTTTTGC-TT-ATATTTAC
1 TCTTTTTGCATTCATATTTAC
87389123 T
1 T
87389124 TGTGTATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 2 0.11
21 9 0.47
ACGTcount: A:0.15, C:0.17, G:0.05, T:0.63
Consensus pattern (21 bp):
TCTTTTTGCATTCATATTTAC
Found at i:87391989 original size:38 final size:38
Alignment explanation
Indices: 87391947--87392033 Score: 147
Period size: 38 Copynumber: 2.3 Consensus size: 38
87391937 GAGCATCAAA
*
87391947 TTAATTTGAATCAAGCTTAATATTATCATGTTTTAATT
1 TTAATTTGAACCAAGCTTAATATTATCATGTTTTAATT
*
87391985 TTAATTTAAACCAAGCTTAATATTATCATGTTTTAATT
1 TTAATTTGAACCAAGCTTAATATTATCATGTTTTAATT
87392023 TTAATATTGAA
1 TTAAT-TTGAA
87392034 ATACCGATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
38 41 0.91
39 4 0.09
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (38 bp):
TTAATTTGAACCAAGCTTAATATTATCATGTTTTAATT
Found at i:87392165 original size:20 final size:20
Alignment explanation
Indices: 87392093--87392165 Score: 50
Period size: 20 Copynumber: 3.8 Consensus size: 20
87392083 TAATTGCTTA
*
87392093 TATTTAATGA-TATAATAAAT
1 TATTTAAT-ATTACAATAAAT
*
87392113 TA-TTAATATAACTAATATAA-
1 TATTTAATATTAC-AATA-AAT
*
87392133 T-TTT--TATTCCAATAAAT
1 TATTTAATATTACAATAAAT
87392150 TATTTAATATTACAAT
1 TATTTAATATTACAAT
87392166 TTTGTTTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 16
0.66 0.08 0.26
Matches are distributed among these distances:
16 2 0.05
17 5 0.12
18 8 0.20
19 6 0.15
20 17 0.43
21 2 0.05
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.47
Consensus pattern (20 bp):
TATTTAATATTACAATAAAT
Found at i:87392252 original size:15 final size:14
Alignment explanation
Indices: 87392225--87392254 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
87392215 TAGTGTTTTA
87392225 AATATTTTATTAAT
1 AATATTTTATTAAT
87392239 AATATTTATATTAAT
1 AATATTT-TATTAAT
87392254 A
1 A
87392255 TTTTAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
AATATTTTATTAAT
Found at i:87402395 original size:16 final size:14
Alignment explanation
Indices: 87402361--87402404 Score: 65
Period size: 13 Copynumber: 3.3 Consensus size: 14
87402351 ATATGTGAAG
87402361 AATATTA-TTTTAA
1 AATATTATTTTTAA
87402374 AATATTATTTTTAA
1 AATATTATTTTTAA
*
87402388 AAT-TTATTATTAA
1 AATATTATTTTTAA
87402401 AATA
1 AATA
87402405 AAATTGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
AATATTATTTTTAA
Found at i:87411364 original size:43 final size:43
Alignment explanation
Indices: 87411327--87411460 Score: 137
Period size: 43 Copynumber: 3.1 Consensus size: 43
87411317 TTACATGTCG
*
87411327 TCACATAACGATGCCACTATCCCAGACATGGTTTTACACGAAA
1 TCACATAACGATGCCAATATCCCAGACATGGTTTTACACGAAA
* * * * *
87411370 TCATATAATGATGCGAATGTCCCAGACATGGTTTTACAC-TAA
1 TCACATAACGATGCCAATATCCCAGACATGGTTTTACACGAAA
* * * * * *
87411412 TCACA-ATACAATTCCAATGTCCCAGACATGGTCTTACATGTAA
1 TCACATA-ACGATGCCAATATCCCAGACATGGTTTTACACGAAA
87411455 TCACAT
1 TCACAT
87411461 CTCGGTAACC
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 32 0.43
43 42 0.56
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (43 bp):
TCACATAACGATGCCAATATCCCAGACATGGTTTTACACGAAA
Found at i:87416540 original size:18 final size:18
Alignment explanation
Indices: 87416517--87416551 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
87416507 GCCACATTCC
87416517 TTTGTTCTCAAAGTCTCA
1 TTTGTTCTCAAAGTCTCA
87416535 TTTGTTCTCAAAGTCTC
1 TTTGTTCTCAAAGTCTC
87416552 CTTCAAACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.46
Consensus pattern (18 bp):
TTTGTTCTCAAAGTCTCA
Found at i:87418444 original size:34 final size:34
Alignment explanation
Indices: 87418386--87418481 Score: 124
Period size: 34 Copynumber: 2.8 Consensus size: 34
87418376 GTTCCAATTA
* *
87418386 GGGCCTTAGCCCCTTTTCATTAACAGTATCAGTCT
1 GGGCCTTAG-CCCATTTCAGTAACAGTATCAGTCT
* *
87418421 GGGCCTAAGCCCATTTCAGTAACAG-AGGCAGTCT
1 GGGCCTTAGCCCATTTCAGTAACAGTA-TCAGTCT
87418455 GGGCCTTAGCCCATTTCAGT-ACAGTAT
1 GGGCCTTAGCCCATTTCAGTAACAGTAT
87418482 GCAAACAAAG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
33 5 0.09
34 40 0.75
35 8 0.15
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (34 bp):
GGGCCTTAGCCCATTTCAGTAACAGTATCAGTCT
Found at i:87419176 original size:16 final size:16
Alignment explanation
Indices: 87419155--87419185 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87419145 CCCACATTTC
87419155 GGCTTTTCAACTTTTT
1 GGCTTTTCAACTTTTT
*
87419171 GGCTTTTCGACTTTT
1 GGCTTTTCAACTTTT
87419186 CAGCCTTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.19, G:0.16, T:0.55
Consensus pattern (16 bp):
GGCTTTTCAACTTTTT
Found at i:87428606 original size:21 final size:22
Alignment explanation
Indices: 87428571--87428612 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
87428561 AAAAACTATA
87428571 AAAATAATTAAAAAG-TATAAT
1 AAAATAATTAAAAAGATATAAT
87428592 AAAATAA-TATAAAAGATATAA
1 AAAATAATTA-AAAAGATATAA
87428613 ATTCAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 12 0.63
22 5 0.26
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (22 bp):
AAAATAATTAAAAAGATATAAT
Found at i:87428612 original size:22 final size:21
Alignment explanation
Indices: 87428558--87428605 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
87428548 AGATAATGAG
*
87428558 ATTAAAAACTAT-A-AAAATA
1 ATTAAAAAGTATAATAAAATA
87428577 ATTAAAAAGTATAATAAAATA
1 ATTAAAAAGTATAATAAAATA
87428598 ATATAAAA
1 AT-TAAAA
87428606 GATATAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 11 0.44
20 1 0.04
21 8 0.32
22 5 0.20
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
ATTAAAAAGTATAATAAAATA
Found at i:87428625 original size:22 final size:22
Alignment explanation
Indices: 87428600--87428657 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
87428590 ATAAAATAAT
*
87428600 ATAAAAGATATAAATTCAA-AAA
1 ATAAAA-ATATAAATTAAAGAAA
*
87428622 ATAAAAAAAATAAA-TAAAGAAA
1 AT-AAAAATATAAATTAAAGAAA
*
87428644 ATAAAAATAAAAAT
1 ATAAAAATATAAAT
87428658 ATATAAATCC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
21 12 0.41
22 13 0.45
23 4 0.14
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (22 bp):
ATAAAAATATAAATTAAAGAAA
Found at i:87428636 original size:13 final size:13
Alignment explanation
Indices: 87428620--87428664 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
87428610 TAAATTCAAA
87428620 AAATAAAAAAAAT
1 AAATAAAAAAAAT
*
87428633 AAATAAAGAAAAT
1 AAATAAAAAAAAT
*
87428646 AAA-AATAAAAAT
1 AAATAAAAAAAAT
*
87428658 ATATAAA
1 AAATAAA
87428665 TCCAGAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (13 bp):
AAATAAAAAAAAT
Found at i:87428663 original size:29 final size:28
Alignment explanation
Indices: 87428618--87428689 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 28
87428608 TATAAATTCA
87428618 AAAAATAAAAAAAATAAATAAAGAAAAT
1 AAAAATAAAAAAAATAAATAAAGAAAAT
* **
87428646 AAAAATAAAAATATATAAATCCAGAAAAT
1 AAAAATAAAAA-AAATAAATAAAGAAAAT
87428675 AAAAATAGAAAAAAA
1 AAAAATA-AAAAAAA
87428690 AGGGTTTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 11 0.29
29 23 0.61
30 4 0.11
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (28 bp):
AAAAATAAAAAAAATAAATAAAGAAAAT
Found at i:87428684 original size:13 final size:13
Alignment explanation
Indices: 87428628--87428690 Score: 60
Period size: 13 Copynumber: 4.7 Consensus size: 13
87428618 AAAAATAAAA
87428628 AAAATAAATAA-AG
1 AAAATAAA-AATAG
87428641 AAAATAAAAATA-
1 AAAATAAAAATAG
87428653 AAAATATATAAATCCAG
1 AAAATA-A-AAAT--AG
87428670 AAAATAAAAATAG
1 AAAATAAAAATAG
87428683 AAAA-AAAA
1 AAAATAAAA
87428691 GGGTTTCGGG
Statistics
Matches: 44, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
12 12 0.27
13 16 0.36
14 4 0.09
15 4 0.09
16 2 0.05
17 6 0.14
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (13 bp):
AAAATAAAAATAG
Found at i:87429447 original size:20 final size:20
Alignment explanation
Indices: 87429424--87429475 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
87429414 TCATTTCATA
87429424 TAAAACCAAAATACTTCAAG
1 TAAAACCAAAATACTTCAAG
* *
87429444 TAAAACCAAAATAGTTTAAG
1 TAAAACCAAAATACTTCAAG
*
87429464 TAAAGCCAAAAT
1 TAAAACCAAAAT
87429476 GGATAGAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.56, C:0.15, G:0.08, T:0.21
Consensus pattern (20 bp):
TAAAACCAAAATACTTCAAG
Found at i:87429986 original size:22 final size:22
Alignment explanation
Indices: 87429958--87430022 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
87429948 GCACTAATGA
* *
87429958 ACAGAGAGCACTAAGGTGCTAT
1 ACAGAGAGCACTAATGTGCTAG
**
87429980 ACAGAGAGCAAGAATGTGCTAG
1 ACAGAGAGCACTAATGTGCTAG
*
87430002 ACGGAGAGCACTAATGTGCTA
1 ACAGAGAGCACTAATGTGCTA
87430023 ATAATCGGAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (22 bp):
ACAGAGAGCACTAATGTGCTAG
Found at i:87431922 original size:23 final size:22
Alignment explanation
Indices: 87431888--87431934 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
87431878 GCAAATTAAT
*
87431888 AGAAAAAGAAGAAAGAAAAGAA
1 AGAAAAAAAAGAAAGAAAAGAA
87431910 AGAAAAATAAAGAAAGAAAAGAA
1 AGAAAAA-AAAGAAAGAAAAGAA
87431933 AG
1 AG
87431935 GAGACCGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (22 bp):
AGAAAAAAAAGAAAGAAAAGAA
Found at i:87439880 original size:34 final size:34
Alignment explanation
Indices: 87439837--87439905 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
87439827 ACAACTACAT
87439837 TTCATGGATTGTCATGCAATCAATATCTAAATTA
1 TTCATGGATTGTCATGCAATCAATATCTAAATTA
87439871 TTCATGGATTGTCATGCAATCAATATCTAAATTA
1 TTCATGGATTGTCATGCAATCAATATCTAAATTA
87439905 T
1 T
87439906 CATACATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (34 bp):
TTCATGGATTGTCATGCAATCAATATCTAAATTA
Found at i:87452525 original size:15 final size:16
Alignment explanation
Indices: 87452507--87452536 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87452497 TTGATCATAT
87452507 TTTATT-TAATAAATA
1 TTTATTCTAATAAATA
87452522 TTTATTCTAATAAAT
1 TTTATTCTAATAAAT
87452537 TAATAGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTATTCTAATAAATA
Found at i:87455847 original size:129 final size:129
Alignment explanation
Indices: 87455612--87455873 Score: 454
Period size: 129 Copynumber: 2.0 Consensus size: 129
87455602 AAAGATAGTT
* *
87455612 ATTACTAGTACTTTTGGTTCCCTTGAGTATGATATCCCGGTCTTGCGATTACTATACTATTGTTT
1 ATTACTAGTACTTTTGGTTCCCTTGAGTATGATATCCCGGTCTTGCCATTACTATACTATTGTTC
87455677 GATAGGTGCGCTTACCTTTTCATCGTGATAATAGTTAGTCTAGGTTTGATCTCCATTATAAATA
66 GATAGGTGCGCTTACCTTTTCATCGTGATAATAGTTAGTCTAGGTTTGATCTCCATTATAAATA
*
87455741 ATTATTAGTACTTTTGGTTCCCTT-AGGTATGATATCCCGGTCTTGCCATTACTATACTATTGTT
1 ATTACTAGTACTTTTGGTTCCCTTGA-GTATGATATCCCGGTCTTGCCATTACTATACTATTGTT
* **
87455805 CGATAGGTGCGCTTGCCTTTTTGTCGTGATAATAGTTAGTCTAGGTTTGATCTCCATTATAAATA
65 CGATAGGTGCGCTTACCTTTTCATCGTGATAATAGTTAGTCTAGGTTTGATCTCCATTATAAATA
87455870 ATTA
1 ATTA
87455874 ATACTTGTTA
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
128 1 0.01
129 125 0.99
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (129 bp):
ATTACTAGTACTTTTGGTTCCCTTGAGTATGATATCCCGGTCTTGCCATTACTATACTATTGTTC
GATAGGTGCGCTTACCTTTTCATCGTGATAATAGTTAGTCTAGGTTTGATCTCCATTATAAATA
Found at i:87464989 original size:96 final size:95
Alignment explanation
Indices: 87464825--87465100 Score: 306
Period size: 96 Copynumber: 2.9 Consensus size: 95
87464815 AGGGTGAATT
* * * * *
87464825 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAGGCCAATGCCATTTCCCA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCATGCCGATGCCATGT-CCA
87464890 GACATGGTCTTACACTAGCTCTCA-TA-ATGTG
64 GACATGGTCTTACACTAGCTCTCATTACAT-TG
* * * * *
87464921 ACCGATGCCATATCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCTA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-ATGCCGATGCCATGTCC-A
* *
87464986 GACATGGTTTTACACTGGCTCTCATTACATTG
64 GACATGGTCTTACACTAGCTCTCATTACATTG
* * * *
87465018 -CTGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCATGGTCGATGCCATGTTCCA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAT-GCCGATGCCATG-TCCA
* *
87465082 AACATGGTCTTACATTAGC
64 GACATGGTCTTACACTAGC
87465101 ACACATATCA
Statistics
Matches: 149, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
95 5 0.03
96 135 0.91
97 7 0.05
98 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (95 bp):
ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCATGCCGATGCCATGTCCAGA
CATGGTCTTACACTAGCTCTCATTACATTG
Found at i:87465109 original size:48 final size:48
Alignment explanation
Indices: 87464826--87465110 Score: 260
Period size: 48 Copynumber: 5.9 Consensus size: 48
87464816 GGGTGAATTA
* * *
87464826 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGA-GG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACAT-ATCATGG
* * *
87464874 CCAATGCCAT-TTCCCAGACATGGTCTTACACTAGCTCTCATA--ATGTG
1 CCGATGCCATGTT-CCAAACATGGTCTTACACTAGCTCACATATCATG-G
* * * *
87464921 ACCGATGCCATATCCCAGACATGGTCTTACACTAGCGCACATATCAAT-G
1 -CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATC-ATGG
* * * * *
87464970 CCGATGCCATG-TCCTAGACATGGTTTTACACTGGCTCTCAT-TACATTG
1 CCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACATAT-CATGG
* * * *
87465018 CTGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCATGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCATGG
* * *
87465066 TCGATGCCATGTTCCAAACATGGTCTTACATTAGCACACATATCA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCA
87465111 CCCAAATGTC
Statistics
Matches: 199, Mismatches: 25, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
47 8 0.04
48 181 0.91
49 6 0.03
51 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCATGG
Found at i:87468666 original size:16 final size:17
Alignment explanation
Indices: 87468645--87468686 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
87468635 ATTATTATGT
87468645 ATTAATTTATAA-TATA
1 ATTAATTTATAATTATA
*
87468661 ATTAATTT-TAATTTTA
1 ATTAATTTATAATTATA
87468677 ATCTAATTTA
1 AT-TAATTTA
87468687 ATTTGGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 3 0.14
16 13 0.59
17 6 0.27
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTAATTTATAATTATA
Found at i:87468671 original size:22 final size:22
Alignment explanation
Indices: 87468646--87468690 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
87468636 TTATTATGTA
87468646 TTAATTTATAATATAA-TTAATT
1 TTAATTT-TAATATAATTTAATT
*
87468668 TTAATTTTAATCTAATTTAATT
1 TTAATTTTAATATAATTTAATT
87468690 T
1 T
87468691 GGGTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTAATTTTAATATAATTTAATT
Found at i:87479584 original size:16 final size:16
Alignment explanation
Indices: 87479559--87479598 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
87479549 TTGACGACAT
*
87479559 TTTGATTTATTCGAAA
1 TTTGAATTATTCGAAA
87479575 TTTGAATTATTCGAAA
1 TTTGAATTATTCGAAA
87479591 TTTGAATT
1 TTTGAATT
87479599 CGAGCATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (16 bp):
TTTGAATTATTCGAAA
Found at i:87482322 original size:29 final size:29
Alignment explanation
Indices: 87482286--87482344 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
87482276 AAGAAAGAAA
87482286 TAAAGAAAAGAAAGAAGACTGATGACAAC
1 TAAAGAAAAGAAAGAAGACTGATGACAAC
87482315 TAAAGAAAAGAAAGAAGACTGATGACAAC
1 TAAAGAAAAGAAAGAAGACTGATGACAAC
87482344 T
1 T
87482345 TAATGGTTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.58, C:0.10, G:0.20, T:0.12
Consensus pattern (29 bp):
TAAAGAAAAGAAAGAAGACTGATGACAAC
Found at i:87483267 original size:37 final size:39
Alignment explanation
Indices: 87483226--87483322 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 39
87483216 GACTTCGAGT
* *
87483226 CGATGAGGCACTGGGCGCCAA-TTTGCTTCGG-TTTAAC
1 CGATGAGGCACTGGGTGCCAATTTTACTTCGGATTTAAC
* * *
87483263 CGATGAGACACTGGGTGTCAATTTTACTTCGGATTTATC
1 CGATGAGGCACTGGGTGCCAATTTTACTTCGGATTTAAC
87483302 CGATGAGGCACTGGGTGCCAA
1 CGATGAGGCACTGGGTGCCAA
87483323 ACTAGTGTGT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
37 18 0.35
38 9 0.18
39 24 0.47
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAATTTTACTTCGGATTTAAC
Found at i:87485101 original size:58 final size:57
Alignment explanation
Indices: 87484961--87485102 Score: 167
Period size: 57 Copynumber: 2.5 Consensus size: 57
87484951 TATCGTATTA
** * *
87484961 CAGGATTACCAGTCCAGGCTAAATCCTTTTTGTAACGTATGCTCAAAAGAGCTCAAT
1 CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAAAAGAGATCAAT
* * * * *
87485018 TAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGTTCGAGAGAGATTATAT
1 CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAAAAGAGATCA-AT
* * *
87485076 CAGGATTACCTGTCCGGGCTGAATCCT
1 CAGGATTACCAGTCCAGGCTAAATCCT
87485103 TTCTATAATG
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
57 46 0.65
58 25 0.35
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAAAAGAGATCAAT
Found at i:87493391 original size:21 final size:21
Alignment explanation
Indices: 87493367--87493406 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
87493357 AAATGAAACA
*
87493367 ATTAAATTAAAAACAAAAAAT
1 ATTAAAATAAAAACAAAAAAT
*
87493388 ATTAAAATAAAAATAAAAA
1 ATTAAAATAAAAACAAAAA
87493407 TAAAAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (21 bp):
ATTAAAATAAAAACAAAAAAT
Found at i:87493398 original size:5 final size:6
Alignment explanation
Indices: 87493343--87493412 Score: 59
Period size: 6 Copynumber: 10.8 Consensus size: 6
87493333 AAGAACGAAG
* * * *
87493343 AAAAAT AAAAAT TAAAAT GAAACAAT TAAATT AAAAACA AAAAAT ATTAAAAT
1 AAAAAT AAAAAT AAAAAT -AAA-AAT AAAAAT AAAAA-T AAAAAT A--AAAAT
87493396 AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAA
87493413 ATGGTTAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
6 33 0.65
7 9 0.18
8 9 0.18
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.20
Consensus pattern (6 bp):
AAAAAT
Found at i:87501672 original size:31 final size:31
Alignment explanation
Indices: 87501634--87501698 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
87501624 AGAAGAGAAC
87501634 TTGTATCTTGCTTCATTAAAATAGGATTCTT
1 TTGTATCTTGCTTCATTAAAATAGGATTCTT
87501665 TTGTATCTTGCTTCATTAAAATAGGATTCTT
1 TTGTATCTTGCTTCATTAAAATAGGATTCTT
87501696 TTG
1 TTG
87501699 GGCTATCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.49
Consensus pattern (31 bp):
TTGTATCTTGCTTCATTAAAATAGGATTCTT
Found at i:87502295 original size:82 final size:83
Alignment explanation
Indices: 87502158--87502350 Score: 273
Period size: 82 Copynumber: 2.3 Consensus size: 83
87502148 TTTAAATCAT
* * * * *
87502158 AAAATGGTACTTAAACTAT-TTTTTTTTTCAAGTTTCTATTTAAACTTTTTTTTTTGGTCGACTG
1 AAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGCTATTTAAACTTTTTTTTTTGGACAACTG
87502222 ATACCTAAACTATACCAC
66 ATACCTAAACTATACCAC
* * *
87502240 AAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGGTATTTCAAC-TTTTTTTTTGGACAAGTG
1 AAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGCTATTTAAACTTTTTTTTTTGGACAACTG
*
87502304 ATACCTAAATTATACCAC
66 ATACCTAAACTATACCAC
87502322 AAAATGGTACCTAAACTATAAATCTTTTT
1 AAAATGGTACCTAAACTAT--ATCTTTTT
87502351 CCTAGGTTTA
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
82 69 0.70
83 22 0.22
84 8 0.08
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (83 bp):
AAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGCTATTTAAACTTTTTTTTTTGGACAACTG
ATACCTAAACTATACCAC
Found at i:87502373 original size:82 final size:82
Alignment explanation
Indices: 87502158--87502403 Score: 239
Period size: 82 Copynumber: 3.0 Consensus size: 82
87502148 TTTAAATCAT
* * * * ** * * * *
87502158 AAAATGGTACTTAAACTAT-TTTTTTTTTCAAGTTTCTATTTAAACTTTTTTTTTTGGTCGACTG
1 AAAATGGTACCTAAACTATATCTTTTTCTCAAG-TTGTAGCTAAACATTTTTTTTTGGACAAGTG
87502222 ATACCTAAACTATACCAC
65 ATACCTAAACTATACCAC
* ** *
87502240 AAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGGTATTTCAAC-TTTTTTTTTGGACAAGTG
1 AAAATGGTACCTAAACTATATCTTTTTCTCAAGTT-GTAGCTAAACATTTTTTTTTGGACAAGTG
*
87502304 ATACCTAAATTATACCAC
65 ATACCTAAACTATACCAC
*
87502322 AAAATGGTACCTAAACTATAAATCTTTTTC-CTAGGTT-TAGCTAAACATTTTTTTTTGGTTACA
1 AAAATGGTACCTAAACTAT--ATCTTTTTCTC-AAGTTGTAGCTAAACATTTTTTTTTGG--ACA
* *
87502385 AGTGATACATAAAGTATAC
61 AGTGATACCTAAACTATAC
87502404 TCCAATACCC
Statistics
Matches: 141, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
82 77 0.55
83 32 0.23
84 12 0.09
85 20 0.14
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (82 bp):
AAAATGGTACCTAAACTATATCTTTTTCTCAAGTTGTAGCTAAACATTTTTTTTTGGACAAGTGA
TACCTAAACTATACCAC
Found at i:87511641 original size:53 final size:54
Alignment explanation
Indices: 87511460--87511666 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
87511450 ATTAGGGTTT
* * * * *
87511460 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* ** ** * * * *
87511514 AAGGAAATTATGTAAGACCATATCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * *
87511569 AAAGAT-CCTATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* *
87511622 AAGGATACCATGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
87511667 AAAAAGGAAA
Statistics
Matches: 121, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
53 44 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:87519102 original size:55 final size:54
Alignment explanation
Indices: 87518985--87519167 Score: 201
Period size: 55 Copynumber: 3.4 Consensus size: 54
87518975 AGGATACCAA
* * **
87518985 GTAAGACCATGCCAAGGCATGGCATTCGA-AAGTTCTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCATT-GATAAGTTCTATAAGGCAAGGATCTCAT
* * *
87519039 GTAAGACCATGTCAAGACATGGCATTGATAAATTACTATAAGGCAAAGATCTCAT
1 GTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGCAAGGATCTCAT
* * * * *
87519094 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAGGGTAC-CAT
1 GTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAT-CTCAT
*
87519147 GTAAGACCATGTCAAGACATG
1 GTAAGACCATGCCAAGACATG
87519168 AAAATTGTAA
Statistics
Matches: 109, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
53 35 0.32
54 30 0.28
55 44 0.40
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
GTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGATCTCAT
Found at i:87523871 original size:39 final size:39
Alignment explanation
Indices: 87523827--87523903 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 39
87523817 GATGTTTTCA
* *
87523827 AGTATTGTGACATATTCTTAAAGGTTATGTGATTATATG
1 AGTATTGTGACATATGCTTAAAGGTTAGGTGATTATATG
* ** *
87523866 AGTATTGTGATATATGCTTGTATGTTAGGTGATTATAT
1 AGTATTGTGACATATGCTTAAAGGTTAGGTGATTATAT
87523904 AGGTTGTATG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.45
Consensus pattern (39 bp):
AGTATTGTGACATATGCTTAAAGGTTAGGTGATTATATG
Found at i:87532172 original size:46 final size:44
Alignment explanation
Indices: 87532119--87532233 Score: 160
Period size: 46 Copynumber: 2.5 Consensus size: 44
87532109 ATTGTGAGCT
87532119 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA--TAAGCC
* *
87532165 AGTGTAAGACATGTCTGAGACATGCATCGGCTACGAGATAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATAAGCC
*
87532209 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
87532234 GCATTGGCAT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
44 14 0.22
45 15 0.24
46 34 0.54
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATAAGCC
Found at i:87536097 original size:31 final size:31
Alignment explanation
Indices: 87536059--87536121 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
87536049 AATCTCTCTA
*
87536059 TTTGAGGGATTAATTTGAAAAGTTATCAAGG
1 TTTGAGGGATTAATTTCAAAAGTTATCAAGG
*
87536090 TTTGAGGGATTAATTTCAAAATTTATCAAGG
1 TTTGAGGGATTAATTTCAAAAGTTATCAAGG
87536121 T
1 T
87536122 ATGAAAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (31 bp):
TTTGAGGGATTAATTTCAAAAGTTATCAAGG
Found at i:87543593 original size:20 final size:20
Alignment explanation
Indices: 87543568--87543612 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
87543558 AGGGACTAAA
* *
87543568 ATGAAAAGTTTTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
87543588 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
87543608 ATGAA
1 ATGAA
87543613 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:87551632 original size:27 final size:27
Alignment explanation
Indices: 87551602--87551779 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
87551592 ATATCGAGTC
* * * *
87551602 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
87551629 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87551656 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87551684 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87551711 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87551738 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87551765 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87551780 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87551741 original size:82 final size:81
Alignment explanation
Indices: 87551623--87551778 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
87551613 TGCTATATAA
*
87551623 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87551688 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87551705 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87551769 CACTTAGTGC
65 CACTTAGTGC
87551779 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87556802 original size:25 final size:25
Alignment explanation
Indices: 87556735--87556813 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
87556725 GGCCCTTCAA
* *
87556735 ATAACTCCCCACAAAGACTTTCTTA-
1 ATAACTCGCCACAAAGGCTTT-TTAG
*
87556760 ATAACAT-GCCACATAGGCTTTTTAG
1 ATAAC-TCGCCACAAAGGCTTTTTAG
* *
87556785 ATAACTCGCCACAAAGGCATTTCAG
1 ATAACTCGCCACAAAGGCTTTTTAG
87556810 ATAA
1 ATAA
87556814 TATGTCACAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
24 4 0.09
25 40 0.89
26 1 0.02
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (25 bp):
ATAACTCGCCACAAAGGCTTTTTAG
Found at i:87556822 original size:25 final size:25
Alignment explanation
Indices: 87556794--87556914 Score: 95
Period size: 25 Copynumber: 4.8 Consensus size: 25
87556784 GATAACTCGC
*
87556794 CACAAAGGCATTTCAGATAATATGT
1 CACAAAGGCCTTTCAGATAATATGT
** * *
87556819 CACATGGGCCTTTCTAAATAATATGC
1 CACAAAGGCCTTTC-AGATAATATGT
* **
87556845 CATATAA-GTTTTTCAGATAACT-TGT
1 CACA-AAGGCCTTTCAGATAA-TATGT
87556870 CACAAA-GCCTTTCTAGATAATATGT
1 CACAAAGGCCTTTC-AGATAATATGT
* *
87556895 CACATAGGCTTTTCAGATAA
1 CACAAAGGCCTTTCAGATAA
87556915 CTCACCATAA
Statistics
Matches: 73, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
24 8 0.11
25 41 0.56
26 24 0.33
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (25 bp):
CACAAAGGCCTTTCAGATAATATGT
Found at i:87556823 original size:50 final size:49
Alignment explanation
Indices: 87556709--87556839 Score: 129
Period size: 50 Copynumber: 2.6 Consensus size: 49
87556699 ACGAATCCCA
87556709 AATAATATGTCACATAGGCCCTTCAAATAACTCCCCACAAAGACTTTCTT
1 AATAATATGTCACATAGGCCCTTCAAATAACTCCCCACAAAGACTTTC-T
* * ** * * * *
87556759 AATAACATGCCACATAGGCTTTTTAGATAACTCGCCACAAAGGCATTTC-
1 AATAATATGTCACATAGGCCCTTCAAATAACTCCCCACAAAGAC-TTTCT
* *
87556808 AGATAATATGTCACATGGGCCTTTCTAAATAA
1 A-ATAATATGTCACATAGGCCCTTC-AAATAA
87556840 TATGCCATAT
Statistics
Matches: 64, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
49 1 0.02
50 54 0.84
51 9 0.14
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (49 bp):
AATAATATGTCACATAGGCCCTTCAAATAACTCCCCACAAAGACTTTCT
Found at i:87556845 original size:76 final size:76
Alignment explanation
Indices: 87556752--87556908 Score: 201
Period size: 76 Copynumber: 2.1 Consensus size: 76
87556742 CCCACAAAGA
* *
87556752 CTTTCTTAATAACATGCCACATAGGCTTTTT-AGATAACTCGCCACAAAGGCATTTC-AGATAAT
1 CTTTCTAAATAACATGCCACATAAG-TTTTTCAGATAACTCGCCACAAA-GCATTTCTAGATAAT
*
87556815 ATGTCACATGGGC
64 ATGTCACATAGGC
* * * * *
87556828 CTTTCTAAATAATATGCCATATAAGTTTTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATAT
1 CTTTCTAAATAACATGCCACATAAGTTTTTCAGATAACTCGCCACAAAGCATTTCTAGATAATAT
87556893 GTCACATAGGC
66 GTCACATAGGC
*
87556904 TTTTC
1 CTTTC
87556909 AGATAACTCA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
75 11 0.16
76 59 0.84
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (76 bp):
CTTTCTAAATAACATGCCACATAAGTTTTTCAGATAACTCGCCACAAAGCATTTCTAGATAATAT
GTCACATAGGC
Found at i:87556893 original size:50 final size:50
Alignment explanation
Indices: 87556804--87556949 Score: 150
Period size: 50 Copynumber: 2.9 Consensus size: 50
87556794 CACAAAGGCA
** * * *
87556804 TTTCAGATAA-TATGTCACATGGGCCTTTCTAAATAATATGCCATATAAGTT
1 TTTCAGATAACT-TGTCACA-AAGCCTTTCTAGATAATATGCCACATAAGCT
* *
87556855 TTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATATGTCACATAGGCT
1 TTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATATGCCACATAAGCT
*** * **
87556905 TTTCAGATAACTCACCATAAAGGTTTTCTAGATAATATGCCACAT
1 TTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATATGCCACAT
87556950 TGGCTCTGTT
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
50 62 0.77
51 17 0.21
52 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (50 bp):
TTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATATGCCACATAAGCT
Found at i:87559710 original size:40 final size:40
Alignment explanation
Indices: 87559673--87559898 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
87559663 GCTACTCGTT
* *
87559673 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
87559713 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
87559753 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
87559793 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
87559833 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
87559874 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
87559899 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 152 0.90
41 14 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:87568941 original size:16 final size:16
Alignment explanation
Indices: 87568920--87568978 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
87568910 TTAATCACTT
87568920 TAATATTAAATTAATA
1 TAATATTAAATTAATA
** *
87568936 TAATATTTATCTTGATA
1 TAATA-TTAAATTAATA
* *
87568953 -AATATTATATTAATT
1 TAATATTAAATTAATA
87568968 TAATATTAAAT
1 TAATATTAAAT
87568979 CTTATTAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
15 8 0.24
16 18 0.53
17 8 0.24
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:87582991 original size:18 final size:18
Alignment explanation
Indices: 87582968--87583007 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
87582958 GGTAAATTTG
*
87582968 TTTTATGAAAACGACGGT
1 TTTTATGAAAACAACGGT
* *
87582986 TTTTATGCAAACAATGGT
1 TTTTATGAAAACAACGGT
87583004 TTTT
1 TTTT
87583008 TCTAAAAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (18 bp):
TTTTATGAAAACAACGGT
Found at i:87584663 original size:27 final size:27
Alignment explanation
Indices: 87584598--87584663 Score: 62
Period size: 27 Copynumber: 2.5 Consensus size: 27
87584588 GTTGGGTCGT
* * *
87584598 TAATACCCCAGT-TTGTAAAATCACTG
1 TAATACCCCTGTACTGTAAAATCACCG
* * * *
87584624 AAATACGCTTGTACTGTAAAATGACCG
1 TAATACCCCTGTACTGTAAAATCACCG
87584651 TAATACCCCTGTA
1 TAATACCCCTGTA
87584664 TGGTAGAATG
Statistics
Matches: 29, Mismatches: 10, Indels: 1
0.73 0.25 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.29
Consensus pattern (27 bp):
TAATACCCCTGTACTGTAAAATCACCG
Found at i:87585943 original size:39 final size:39
Alignment explanation
Indices: 87585899--87585976 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
87585889 CTGTAGTTAG
*
87585899 TACTTTCTGAGGCTATACTGAAATAGTTAGGGACTGAAA
1 TACTTTCTGAGGCTATACTAAAATAGTTAGGGACTGAAA
87585938 TACTTTCTGAGGCTATACTAAAATAGTTAGGGACTGAAA
1 TACTTTCTGAGGCTATACTAAAATAGTTAGGGACTGAAA
87585977 CCTCTGAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (39 bp):
TACTTTCTGAGGCTATACTAAAATAGTTAGGGACTGAAA
Found at i:87588556 original size:42 final size:42
Alignment explanation
Indices: 87588454--87588562 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
87588444 TCGTTTCAAT
* * * *
87588454 GCCATATCGCC-GATATGGTCTTACATGAAATATCATATCGAC
1 GCCATATC-CCAGATATGATCTTATATGAAATAACATACCGAC
* * * * *
87588496 GCTATGTCCCTGACATGATCTTATATGAAATAACATACCGAG
1 GCCATATCCCAGATATGATCTTATATGAAATAACATACCGAC
*
87588538 GCCATATCTCAGATATGATCTTATA
1 GCCATATCCCAGATATGATCTTATA
87588563 CGGAATCTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 2 0.04
42 51 0.96
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (42 bp):
GCCATATCCCAGATATGATCTTATATGAAATAACATACCGAC
Found at i:87597864 original size:43 final size:43
Alignment explanation
Indices: 87597729--87597849 Score: 188
Period size: 43 Copynumber: 2.8 Consensus size: 43
87597719 ATTTCCGAGA
87597729 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTCTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTCTAT
* * * * *
87597772 TGTGATTACATGTAAGATCATGTTTGGGAAATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTCTAT
*
87597815 TGTGATTACGTGTAAGACCATGTCTAGGACATTGG
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGG
87597850 TATCATTATT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTCTAT
Found at i:87597874 original size:86 final size:86
Alignment explanation
Indices: 87597728--87597918 Score: 226
Period size: 86 Copynumber: 2.2 Consensus size: 86
87597718 GATTTCCGAG
* *
87597728 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTCTATTGTGATTACATGTAAGATCAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTCTATTGTGATTACATATAAGACCAT
* *
87597793 GTTTGGGAAATTGGCATTG-T
66 GTTTGGGAAAGTGGCATCGAT
* * ***
87597813 ATTGTGATTACGTGTAAGACCATGTCTAGGACATTGGTA-TCATTATT-TGATTTTTTATAAGAC
1 A-TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTC--TATTGTGATTACATATAAGAC
* *
87597876 CCTGTTTGGGACAGTGGCATCGAT
63 CATGTTTGGGAAAGTGGCATCGAT
*
87597900 ATGTGATAACATGTAAGAC
1 ATGTGATTACATGTAAGAC
87597919 TATATCTGGG
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
85 3 0.03
86 80 0.90
87 6 0.07
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (86 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTCTATTGTGATTACATATAAGACCAT
GTTTGGGAAAGTGGCATCGAT
Found at i:87597917 original size:43 final size:43
Alignment explanation
Indices: 87597728--87597918 Score: 172
Period size: 43 Copynumber: 4.4 Consensus size: 43
87597718 GATTTCCGAG
*
87597728 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTCTAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCA-TCGAT
* * * * *
87597772 -TGTGATTACATGTAAGATCATGTTTGGGAAATTGGCATTG-T
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGAT
* *
87597813 ATTGTGATTACGTGTAAGACCATGTCTAGGACATTGGTATC-ATT
1 A-TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGA-T
* *** * * * * *
87597857 ATTTGATTTTTTATAAGACCCTGTTTGGGACAGTGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGAT
*
87597900 ATGTGATAACATGTAAGAC
1 ATGTGATTACATGTAAGAC
87597919 TATATCTGGG
Statistics
Matches: 113, Mismatches: 29, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 108 0.96
44 3 0.03
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGAT
Found at i:87609689 original size:46 final size:46
Alignment explanation
Indices: 87609622--87609839 Score: 230
Period size: 46 Copynumber: 4.7 Consensus size: 46
87609612 TGTAACCCGC
** * *
87609622 CCATAAGCAAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
* * * *
87609668 CCATAAGTGAACTCGGACTCAACTTAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCAT
* * * *
87609718 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
*
87609761 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCAT
87609807 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
87609840 TGGATGCTCA
Statistics
Matches: 144, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
44 2 0.01
45 4 0.03
46 97 0.67
47 24 0.17
48 3 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
Found at i:87618888 original size:42 final size:42
Alignment explanation
Indices: 87618826--87618945 Score: 118
Period size: 43 Copynumber: 2.8 Consensus size: 42
87618816 TATGTGTTTT
* * *
87618826 CATGTAAGACCACATATGGGACGTTGGCATTGTACTTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATTGTACTTGATTA
* ** *
87618868 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCAATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCAT-TGTACTTGATTA
* *
87618911 CATGTAAGACCACGTCTAGGAAGTTGGCATTGTAC
1 CATGTAAGACCACGTCTGGGACGTTGGCATTGTAC
87618946 GAGCTTTCCG
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 32 0.53
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATTGTACTTGATTA
Found at i:87630897 original size:48 final size:48
Alignment explanation
Indices: 87630826--87631040 Score: 224
Period size: 46 Copynumber: 4.6 Consensus size: 48
87630816 AAGCTGACGC
* * * **
87630826 CATGTCCTAGGCAAGTCTTACACTAGCTTGTATATCTCGAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * ** * *
87630874 CATGTCCCAGACATATCTTACACTAGC-TCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* *
87630920 CATGTCCCAAACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * *
87630968 CATGTCCCAGACATGTCTTACACTGGCTCT-CATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
*
87631014 CATATCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
87631041 ACACATATCA
Statistics
Matches: 139, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
46 68 0.49
47 5 0.04
48 65 0.47
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:87630949 original size:94 final size:93
Alignment explanation
Indices: 87630840--87631040 Score: 280
Period size: 94 Copynumber: 2.1 Consensus size: 93
87630830 TCCTAGGCAA
*
87630840 GTCTTACACTAGCTTGTATATCTCGAGGCTAATGCATGTCCCAGACATATCTTACACTAGCTCTC
1 GTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATATCTTACACTAGCTCTC
* *
87630905 GTCTCAA-T-GCCGATGCATGTCCCAAACAT
66 --AT-AAGTGGCCGATGCATATCCCAAACAT
* * * *
87630934 GTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC
1 GTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATATCTTACACTAGCTCTC
*
87630999 ATAATGTGGCCGATGCATATCCCAGACAT
66 ATAA-GTGGCCGATGCATATCCCAAACAT
87631028 GTCTTACACTAGC
1 GTCTTACACTAGC
87631041 ACACATATCA
Statistics
Matches: 95, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 1 0.01
94 91 0.96
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (93 bp):
GTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATATCTTACACTAGCTCTC
ATAAGTGGCCGATGCATATCCCAAACAT
Found at i:87635703 original size:43 final size:42
Alignment explanation
Indices: 87635643--87635798 Score: 161
Period size: 43 Copynumber: 3.6 Consensus size: 42
87635633 GATTACCGAG
* * *
87635643 ATGTAATTACATGTAAGACCATGTCTGGGACATTGGAATCAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT
* * *
87635685 ATTGTGATTACGTATAAGACCATGTCTAGGACATTGGCATCGT
1 A-TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT
* * *
87635728 CATATGAGTT-CGTGTAAGACCATGTCCGGGACATTGCCATCGAT
1 -ATGTGA-TTACGTGTAAGACCATGTCTGGGACATTGGCATC-AT
* * *
87635772 ATGTGATAACATGTAAGACCATATCTG
1 ATGTGATTACGTGTAAGACCATGTCTG
87635799 AGATATGGCA
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 2 0.02
43 86 0.93
44 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (42 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT
Found at i:87637069 original size:14 final size:14
Alignment explanation
Indices: 87637045--87637110 Score: 66
Period size: 14 Copynumber: 4.6 Consensus size: 14
87637035 CCGTGTGAGG
87637045 CACAC-GGCCTGTT
1 CACACGGGCCTGTT
87637058 CACACGGGCCTGTT
1 CACACGGGCCTGTT
*
87637072 CACACGGGCGTGTGAGGT
1 CACACGGGCCTGT----T
87637090 -ACAC-GGCCTGTT
1 CACACGGGCCTGTT
87637102 CACACGGGC
1 CACACGGGC
87637111 ATGTGAACCC
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
12 1 0.02
13 9 0.20
14 23 0.52
16 6 0.14
17 4 0.09
18 1 0.02
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (14 bp):
CACACGGGCCTGTT
Found at i:87637100 original size:30 final size:31
Alignment explanation
Indices: 87637059--87637116 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
87637049 CGGCCTGTTC
*
87637059 ACACGGGCCTGTTCACACGGGCGTGTGAGGT
1 ACACGGGCCTGTTCACACGGGCATGTGAGGT
87637090 ACAC-GGCCTGTTCACACGGGCATGTGA
1 ACACGGGCCTGTTCACACGGGCATGTGA
87637117 ACCCTGTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (31 bp):
ACACGGGCCTGTTCACACGGGCATGTGAGGT
Found at i:87656534 original size:21 final size:21
Alignment explanation
Indices: 87656509--87656556 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
87656499 GTGACCACAT
*
87656509 GGCGTGCCCCATACCCACACG
1 GGCGTGCCCCATAACCACACG
87656530 GGCGTGCCCCATAACCACACG
1 GGCGTGCCCCATAACCACACG
*
87656551 TGCGTG
1 GGCGTG
87656557 TGAACCCTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.19, C:0.42, G:0.27, T:0.12
Consensus pattern (21 bp):
GGCGTGCCCCATAACCACACG
Found at i:87657458 original size:63 final size:63
Alignment explanation
Indices: 87657189--87657460 Score: 246
Period size: 63 Copynumber: 4.3 Consensus size: 63
87657179 CTGGCACACA
* * * * * * * *
87657189 CCGTGTGCCTTACCCGTTTGTCTCAAATATAAACTCAGTGAGTCACA-CAGCCTAGACACACGC
1 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACATGA-CCTAGACACACGC
** * * * * * * *
87657252 ATGTATATCTCACCTGTGTGTCTCTAATATGAACTCAGTAAGTT--ATGGCCTGGACACACGC
1 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACATGACCTAGACACACGC
* * * * * * *
87657313 CCGTGTGTCTCACCCATGTGACTCTAATATGAAC-CTGGTGAGTTACACGGCTTGGACAGACGC
1 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTC-AGTGAGTTACATGACCTAGACACACGC
*
87657376 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACATGACCTAGACACATGC
1 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACATGACCTAGACACACGC
* * *
87657439 TCGTGTGTCTCATCTGTGTGAC
1 CCGTGTGTCTCACCCGTGTGAC
87657461 CCTTATATCT
Statistics
Matches: 166, Mismatches: 38, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
60 1 0.01
61 46 0.28
63 118 0.71
64 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (63 bp):
CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACATGACCTAGACACACGC
Found at i:87664460 original size:37 final size:36
Alignment explanation
Indices: 87664401--87664475 Score: 96
Period size: 37 Copynumber: 2.1 Consensus size: 36
87664391 TCAATTTCAC
* *
87664401 AATTCTATTGTTCTTAAATATCACAGATTCAACTGAT
1 AATTCTATGGTTCTTAAATATCACAAATTCAA-TGAT
* * *
87664438 AATTTTATGGTTCTTCAGTATCACAAATTCAATGAT
1 AATTCTATGGTTCTTAAATATCACAAATTCAATGAT
87664474 AA
1 AA
87664476 GTAAGGAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
36 6 0.18
37 27 0.82
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (36 bp):
AATTCTATGGTTCTTAAATATCACAAATTCAATGAT
Found at i:87669199 original size:7 final size:7
Alignment explanation
Indices: 87669184--87669222 Score: 69
Period size: 7 Copynumber: 5.4 Consensus size: 7
87669174 AATAAAAAGC
87669184 TTTCAGCT
1 TTTC-GCT
87669192 TTTCGCT
1 TTTCGCT
87669199 TTTCGCT
1 TTTCGCT
87669206 TTTCGCT
1 TTTCGCT
87669213 TTTCGCT
1 TTTCGCT
87669220 TTT
1 TTT
87669223 GGTATAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 27 0.87
8 4 0.13
ACGTcount: A:0.03, C:0.26, G:0.13, T:0.59
Consensus pattern (7 bp):
TTTCGCT
Found at i:87670672 original size:20 final size:21
Alignment explanation
Indices: 87670625--87670674 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
87670615 TAGATTTAAC
*
87670625 ATTCATCCTTATTTATCTTTA
1 ATTCATCTTTATTTATCTTTA
87670646 ATT-ATCTTTATTTAT-TTGT-
1 ATTCATCTTTATTTATCTT-TA
87670665 ATTCATCTTT
1 ATTCATCTTT
87670675 TCAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 18 0.69
21 3 0.12
ACGTcount: A:0.22, C:0.14, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTCATCTTTATTTATCTTTA
Found at i:87672253 original size:43 final size:42
Alignment explanation
Indices: 87672163--87672255 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
87672153 TATTTACGTA
** * * *
87672163 TAAGACCATGTTTGGGACATCGACATCGTATCTGATTTCGTG
1 TAAGACCATGTTTGGGACAGAGACATCATATCTGATTACATG
* * *
87672205 TAAGACCCTGTTTGGGACAGAGGCATCAATATTTGATTACATG
1 TAAGACCATGTTTGGGACAGAGACATC-ATATCTGATTACATG
87672248 TAAGACCA
1 TAAGACCA
87672256 CGTCCGGGAC
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
42 23 0.56
43 18 0.44
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (42 bp):
TAAGACCATGTTTGGGACAGAGACATCATATCTGATTACATG
Found at i:87678576 original size:29 final size:29
Alignment explanation
Indices: 87678540--87678597 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
87678530 CAAAATTTCA
87678540 ATCAAAACTTTTAATTCTATTTTTATTTT
1 ATCAAAACTTTTAATTCTATTTTTATTTT
87678569 ATCAAAACTTTTAATTCTATTTTTATTTT
1 ATCAAAACTTTTAATTCTATTTTTATTTT
87678598 TTCTTTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (29 bp):
ATCAAAACTTTTAATTCTATTTTTATTTT
Found at i:87680159 original size:33 final size:33
Alignment explanation
Indices: 87680122--87680198 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
87680112 GCTAATATGT
* * * * *
87680122 TTGATTTCCAATAGCAGATACAACAAGAAATTG
1 TTGATTTCCAACAGCAAATACAACAACAAACTC
*
87680155 TTGATTTCCAACAGCAAATACTACAACAAACTC
1 TTGATTTCCAACAGCAAATACAACAACAAACTC
87680188 TTGATTTCCAA
1 TTGATTTCCAA
87680199 AAGGAAACAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (33 bp):
TTGATTTCCAACAGCAAATACAACAACAAACTC
Found at i:87681565 original size:5 final size:5
Alignment explanation
Indices: 87681555--87681620 Score: 62
Period size: 5 Copynumber: 12.6 Consensus size: 5
87681545 GCAACCCAAT
*
87681555 TTTTA TTTTA TTTTA TTTTT TTCTTAA TTTTA TTTTTA TTTTA TTATT-
1 TTTTA TTTTA TTTTA TTTTA TT-TT-A TTTTA -TTTTA TTTTA TT-TTA
* *
87681603 TATTA CTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTT
87681621 GGATATTAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
4 2 0.04
5 35 0.70
6 11 0.22
7 2 0.04
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:87681616 original size:31 final size:28
Alignment explanation
Indices: 87681555--87681620 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 28
87681545 GCAACCCAAT
87681555 TTTTA-TTTTATTTTATTTTTTTCTTAA
1 TTTTATTTTTATTTTATTTTTTTCTTAA
*
87681582 TTTTATTTTTATTTTATTATTTATTACTTTA
1 TTTTATTTTTATTTTATT-TTT-TT-CTTAA
87681613 TTTTATTT
1 TTTTATTT
87681621 GGATATTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 5 0.15
28 12 0.35
29 3 0.09
30 2 0.06
31 12 0.35
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (28 bp):
TTTTATTTTTATTTTATTTTTTTCTTAA
Found at i:87682939 original size:99 final size:99
Alignment explanation
Indices: 87682759--87682947 Score: 272
Period size: 99 Copynumber: 1.9 Consensus size: 99
87682749 AATAATTTTT
* *
87682759 TTAGGAATATATTGGGCTAAGTAACCGAGGTAGGGTGTTTGGCTGTCATCTCTTTTAACGTCAAA
1 TTAGGAATATATTGGGATAAGTAACCGAGGTAGGGTGCTTGGCTGTCATCTCTTTTAACGTCAAA
* *
87682824 AGGTTCGATATGTTCTTAAGAAAAATATAATAAG
66 AGGTTCAATATATTCTTAAGAAAAATATAATAAG
* * * * * *
87682858 TTAGGAGTATGTTGGGATGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTT-GCGTCAA
1 TTAGGAATATATTGGGATAAGTAACCGAGGTAGGGTGCTTGGCTGTCATCTCT-TTTAACGTCAA
87682922 AAGGTTCAATATATTCTTAAGAAAAA
65 AAGGTTCAATATATTCTTAAGAAAAA
87682948 AAAACAAAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 76 0.96
100 3 0.04
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (99 bp):
TTAGGAATATATTGGGATAAGTAACCGAGGTAGGGTGCTTGGCTGTCATCTCTTTTAACGTCAAA
AGGTTCAATATATTCTTAAGAAAAATATAATAAG
Found at i:87683619 original size:10 final size:10
Alignment explanation
Indices: 87683604--87683653 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
87683594 TGGATTTAAC
87683604 ATTTATCTTT
1 ATTTATCTTT
87683614 ATTTATCTTT
1 ATTTATCTTT
*
87683624 AATTATCTTT
1 ATTTATCTTT
87683634 ATTTAT-TTGT
1 ATTTATCTT-T
*
87683644 ATTCATCTTT
1 ATTTATCTTT
87683654 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:87684658 original size:13 final size:11
Alignment explanation
Indices: 87684622--87684651 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
87684612 ATCCAAATTA
87684622 ATTTATATGAT
1 ATTTATATGAT
*
87684633 ATTTATATAAT
1 ATTTATATGAT
87684644 ATTTATAT
1 ATTTATAT
87684652 TGGATATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (11 bp):
ATTTATATGAT
Found at i:87692335 original size:17 final size:17
Alignment explanation
Indices: 87692313--87692347 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
87692303 ATCATAATTT
*
87692313 TAATATTTAAATTCAAG
1 TAATATTCAAATTCAAG
*
87692330 TAATATTCAAATTTAAG
1 TAATATTCAAATTCAAG
87692347 T
1 T
87692348 TTTTTCTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (17 bp):
TAATATTCAAATTCAAG
Found at i:87699768 original size:16 final size:16
Alignment explanation
Indices: 87699749--87699779 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87699739 ATGTTAATGT
*
87699749 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
87699765 TATTTAATATTAAAA
1 TATTTAATATTAAAA
87699780 TAATACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:87699919 original size:14 final size:15
Alignment explanation
Indices: 87699875--87699921 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
87699865 ATATGTATTG
*
87699875 TTAA-ATTAATTTGTT
1 TTAATATTAAATT-TT
*
87699890 TTAATGTTAAATTTT
1 TTAATATTAAATTTT
*
87699905 TTAATATTCAATTTT
1 TTAATATTAAATTTT
87699920 TT
1 TT
87699922 TTTTGTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 21 0.78
16 6 0.22
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (15 bp):
TTAATATTAAATTTT
Found at i:87699922 original size:16 final size:15
Alignment explanation
Indices: 87699875--87699922 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
87699865 ATATGTATTG
87699875 TTAA-ATTAATTTGTT
1 TTAATATTAATTT-TT
* *
87699890 TTAATGTTAAATTTT
1 TTAATATTAATTTTT
87699905 TTAATATTCAATTTTT
1 TTAATATT-AATTTTT
87699921 TT
1 TT
87699923 TTTGTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (15 bp):
TTAATATTAATTTTT
Found at i:87702789 original size:50 final size:50
Alignment explanation
Indices: 87702713--87702954 Score: 225
Period size: 50 Copynumber: 4.8 Consensus size: 50
87702703 ACCGAAGCTC
* * *
87702713 TCTGGTACGCATAGTAGCCTGCACTTAGTATTACACATACGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
* ** * * * * * *
87702763 TCTGGTACACGTAGTAGCCTAAACTTAGTATTACACACGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAA
* * * *
87702814 TCGGGCACGCATAGTATCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
* * *
87702864 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
*** * *
87702913 CCGTCTTAAACACATAGTAGCCTACACATAGTACTACACATG
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATG
87702955 TGCTCTCACA
Statistics
Matches: 151, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 2 0.01
50 80 0.53
51 37 0.25
52 32 0.21
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
Found at i:87702857 original size:101 final size:101
Alignment explanation
Indices: 87702705--87702905 Score: 321
Period size: 101 Copynumber: 2.0 Consensus size: 101
87702695 CCCTTGTAAC
* * * *
87702705 CGAAGCTCTCTGGTACGCATAGTAGCCTGCACTTAGTATTACACATACGACCTAACAATCTGGTA
1 CGAAGCTATCGGGCACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCTGGTA
*
87702770 CACGTAGTAGCCTAAACTTAGTATTACACACGTGAT
66 CACGTAGTAGCCTAAACTTAGTACTACACACGTGAT
* *
87702806 CGAAGCTATCGGGCACGCATAGTATCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCGGGCACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCTGGTA
**
87702871 CACGTAGTAGCCTGCACTTAGTACTACACACGTGA
66 CACGTAGTAGCCTAAACTTAGTACTACACACGTGA
87702906 CCTAAAACCG
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 91 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (101 bp):
CGAAGCTATCGGGCACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCTGGTA
CACGTAGTAGCCTAAACTTAGTACTACACACGTGAT
Found at i:87705533 original size:29 final size:32
Alignment explanation
Indices: 87705457--87705533 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 32
87705447 GTTTTTTTTA
*
87705457 TTTTTAATTAATAAAT-ATATTATTTTCAATT
1 TTTTTAATTAATAAATCATACTATTTTCAATT
* *
87705488 TTTTT-ATT-TTAATTCAT-CT-TTTT-AATT
1 TTTTTAATTAATAAATCATACTATTTTCAATT
*
87705515 TTTTTAATTAATAACTCAT
1 TTTTTAATTAATAAATCAT
87705534 TTATATATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
27 9 0.24
28 7 0.18
29 12 0.32
30 5 0.13
31 5 0.13
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (32 bp):
TTTTTAATTAATAAATCATACTATTTTCAATT
Found at i:87707796 original size:14 final size:14
Alignment explanation
Indices: 87707777--87707810 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
87707767 GTTCCATTTG
*
87707777 CCCACGCTGCAACT
1 CCCACGCTGCAACA
*
87707791 CCCACGCTTCAACA
1 CCCACGCTGCAACA
87707805 CCCACG
1 CCCACG
87707811 AACGGATTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.53, G:0.12, T:0.12
Consensus pattern (14 bp):
CCCACGCTGCAACA
Found at i:87715641 original size:44 final size:43
Alignment explanation
Indices: 87715461--87715671 Score: 121
Period size: 44 Copynumber: 4.8 Consensus size: 43
87715451 AGCCACCGGC
* *
87715461 CTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAGATACAAGT
1 CTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATACAAGT
* * *
87715505 CTTATCT-TCCTGAGGTAGCAAGGAAGTAGACTGAA-ATTGC-AGAT
1 CTTATCTCT-CTGAGGTAGCAAGG-AGCAGATTGAAGA-TACAAG-T
* * ** ** * *
87715549 CTTATCTC-CATGTA--TCGGCTATGGAGCAGATTTTAGCCACCAGC
1 CTTATCTCTC-TG-AGGT-AGC-AAGGAGCAGATTGAAGATACAAGT
*
87715593 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
1 CTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATACAAGT
* *
87715637 CTTATCT-TCCTAAGGTAGCAAGGAAGCAGACTGAA
1 CTTATCTCT-CTGAGGTAGCAAGG-AGCAGATTGAA
87715672 ATTGCAGATC
Statistics
Matches: 123, Mismatches: 27, Indels: 34
0.67 0.15 0.18
Matches are distributed among these distances:
43 12 0.10
44 103 0.84
45 8 0.07
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGGAGCAGATTGAAGATACAAGT
Found at i:87715653 original size:132 final size:132
Alignment explanation
Indices: 87715416--87715711 Score: 556
Period size: 132 Copynumber: 2.2 Consensus size: 132
87715406 AAATGGTGAG
* *
87715416 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGTA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* *
87715481 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAATTGCA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTGCA
87715546 GA
131 GA
87715548 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
87715613 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTGCA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTGCA
87715678 GA
131 GA
87715680 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
87715712 CCAAGATGGC
Statistics
Matches: 160, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 160 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTGCA
GA
Found at i:87715730 original size:177 final size:178
Alignment explanation
Indices: 87715547--87716002 Score: 648
Period size: 178 Copynumber: 2.6 Consensus size: 178
87715537 GAAATTGCAG
87715547 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
* *
87715612 AAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTG-AAATTG
66 AAGAGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTA
* * *
87715676 CAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCCAAGATGGCGA
131 CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
* * *
87715724 ATCTTATCTTCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTTTGAGGTAGC
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
* * * *
87715789 AAGAGGGCAGGTTGAAGGTACAAATCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTA
66 AAGAGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTA
* *
87715854 CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCGAAGATGGCTA
131 CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
* * * * * ** *
87715902 GTCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCGGCTTTGTCTC-CTTGAAATTG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTC-TGAGGTAG
* * *
87715966 C-AGTGGAGCAGGTTGAAGTTACAAACCTTATCTTCCT
65 CAAG-AGAGCAGGTTGAAGATACAAATCTTATCTTCCT
87716003 GAAGTTACTA
Statistics
Matches: 246, Mismatches: 30, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
177 117 0.48
178 129 0.52
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (178 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
AAGAGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTA
CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
Done.