Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 266 of 344
Found at i:88790601 original size:36 final size:36
Alignment explanation
Indices: 88790561--88790635 Score: 125
Period size: 36 Copynumber: 2.1 Consensus size: 36
88790551 TGCCTCTTCC
*
88790561 CACTCTCCCATGCTGTCTGCCACCAGCACCACTC-CA
1 CACTCTCCCATCCTGTCTGCCACCAGCACCA-TCACA
88790597 CACTCTCCCATCCTGTCTGCCACCAGCACCATCACA
1 CACTCTCCCATCCTGTCTGCCACCAGCACCATCACA
88790633 CAC
1 CAC
88790636 CCCACCGTCC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
35 2 0.05
36 35 0.95
ACGTcount: A:0.21, C:0.51, G:0.09, T:0.19
Consensus pattern (36 bp):
CACTCTCCCATCCTGTCTGCCACCAGCACCATCACA
Found at i:88791502 original size:3 final size:3
Alignment explanation
Indices: 88791470--88791531 Score: 88
Period size: 3 Copynumber: 20.3 Consensus size: 3
88791460 GTTATTTTCA
* * *
88791470 TAT TAT TAA TAT TAA TAT TAA TATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
88791516 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
88791532 GTACATTAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
3 50 0.96
4 2 0.04
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:88809868 original size:26 final size:26
Alignment explanation
Indices: 88809836--88809887 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
88809826 TACATAAGAA
*
88809836 AAAGAAAAAGAAACCATTCTAATATC
1 AAAGAAAAAGAAACCATTCCAATATC
88809862 AAAGAAAAAGAAACCATTCCAATATC
1 AAAGAAAAAGAAACCATTCCAATATC
88809888 CCCTTTTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.58, C:0.17, G:0.08, T:0.17
Consensus pattern (26 bp):
AAAGAAAAAGAAACCATTCCAATATC
Found at i:88819729 original size:72 final size:72
Alignment explanation
Indices: 88819632--88819857 Score: 231
Period size: 72 Copynumber: 3.1 Consensus size: 72
88819622 TGTGATCAGG
* * * *
88819632 CCCGTGAGTAACTCACTGAGTGAGCATATCATGTTAATGTTTTGGGGTCCAGGTACTGACTTTGT
1 CCCGTGAGTAACTCAATGAGCGAGCATATCATGTTAATGTTTTAGGGTCCGGGTACTGACTTTGT
88819697 GTATAAA
66 GTATAAA
* * ** * * * *
88819704 CTCGTGAGTAAATCGTTGAGCGAGCATATCATGTTAATGTTTTAAGGTCTGGGTATTAACTTTGT
1 CCCGTGAGTAACTCAATGAGCGAGCATATCATGTTAATGTTTTAGGGTCCGGGTACTGACTTTGT
*
88819769 GTATAAG
66 GTATAAA
* * * * *
88819776 CCCGTGAGTAGCTCAATGAGC-AGGCAT-TACATGATAATGCTTTCGGGTCCGGGTGCTGACTTT
1 CCCGTGAGTAACTCAATGAGCGA-GCATAT-CATGTTAATGTTTTAGGGTCCGGGTACTGACTTT
* *
88819839 GTGTACAGA
64 GTGTATAAA
*
88819848 CCCATGAGTA
1 CCCGTGAGTA
88819858 GCTGAAATGC
Statistics
Matches: 123, Mismatches: 29, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
71 2 0.02
72 121 0.98
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (72 bp):
CCCGTGAGTAACTCAATGAGCGAGCATATCATGTTAATGTTTTAGGGTCCGGGTACTGACTTTGT
GTATAAA
Found at i:88828416 original size:20 final size:20
Alignment explanation
Indices: 88828387--88828425 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
88828377 TGATTGATTG
* *
88828387 TGATTGAATTGTATTTGAAT
1 TGATTAAATTGTATGTGAAT
88828407 TGATTAAATTGTATGTGAA
1 TGATTAAATTGTATGTGAA
88828426 ATGTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
TGATTAAATTGTATGTGAAT
Found at i:88831409 original size:102 final size:103
Alignment explanation
Indices: 88831262--88831471 Score: 305
Period size: 102 Copynumber: 2.0 Consensus size: 103
88831252 GGACACAAGT
* * * *
88831262 GTGTGCTTGGCCGTGTAAAAACCCTTGTAGGTTCGAAATGGAAAATAAATCCAGATATTTCAACA
1 GTGTGCTTGGCCGTGTAAAAACCCCTGTAGGTTAGAAACGGAAAATAAATCCAGATAATTCAACA
* * *
88831327 CTGGTGAGGGACACAGCTGTGTCCTCAAGCACATGGGC
66 CGGGTGAGGGACACAGCTGTGTCCCCAAGCACACGGGC
** *
88831365 GTGTGCTTGGTTGTGT-AAAACCCCTGTAGGTTAGAAACGTAAAATAAATCCAGATAATTCAACA
1 GTGTGCTTGGCCGTGTAAAAACCCCTGTAGGTTAGAAACGGAAAATAAATCCAGATAATTCAACA
* *
88831429 CGGGTGAGGGACACGGGTGTGTCCCCAAGCACACGGGC
66 CGGGTGAGGGACACAGCTGTGTCCCCAAGCACACGGGC
88831467 GTGTG
1 GTGTG
88831472 AGGCATAACC
Statistics
Matches: 95, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 81 0.85
103 14 0.15
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (103 bp):
GTGTGCTTGGCCGTGTAAAAACCCCTGTAGGTTAGAAACGGAAAATAAATCCAGATAATTCAACA
CGGGTGAGGGACACAGCTGTGTCCCCAAGCACACGGGC
Found at i:88837647 original size:29 final size:29
Alignment explanation
Indices: 88837605--88837664 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
88837595 TCCATTCAAG
88837605 AGATGATAAATGTCCTGGTTGAAATAGAA
1 AGATGATAAATGTCCTGGTTGAAATAGAA
88837634 AGATGATAAATGTCCTGGTTGAAATAGAA
1 AGATGATAAATGTCCTGGTTGAAATAGAA
88837663 AG
1 AG
88837665 GGAAATCCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.27
Consensus pattern (29 bp):
AGATGATAAATGTCCTGGTTGAAATAGAA
Found at i:88837749 original size:22 final size:22
Alignment explanation
Indices: 88837723--88837764 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
88837713 GTGTTGCAGA
*
88837723 AAAGGATTTAGTCCAGACGGAG
1 AAAGGATTTAGCCCAGACGGAG
*
88837745 AAAGGATTTAGCCCGGACGG
1 AAAGGATTTAGCCCAGACGG
88837765 GTGTTCCTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (22 bp):
AAAGGATTTAGCCCAGACGGAG
Found at i:88840374 original size:15 final size:15
Alignment explanation
Indices: 88840351--88840404 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
88840341 GTAAAACAAC
* *
88840351 TTAAGAATAATAATA
1 TTAATAATAATGATA
88840366 TTAATAATAATGGTGATA
1 TTAATAATAA---TGATA
88840384 TTAATAATAATGATA
1 TTAATAATAATGATA
88840399 -TAATAA
1 TTAATAA
88840405 AAATCTAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 6 0.18
15 14 0.41
18 14 0.41
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (15 bp):
TTAATAATAATGATA
Found at i:88840581 original size:33 final size:34
Alignment explanation
Indices: 88840541--88840632 Score: 93
Period size: 33 Copynumber: 2.7 Consensus size: 34
88840531 TTAAGGATAC
88840541 AATAATATAATAATATGT-A-AATAAGCATAAAAAG
1 AATAATATAATAATA-GTAATAATAA-CATAAAAAG
* **
88840575 AA-AATATAATTATAGTAATAATAACATAAAATT
1 AATAATATAATAATAGTAATAATAACATAAAAAG
*
88840608 AATTAATATAATAATAG-AATGATAA
1 AA-TAATATAATAATAGTAATAATAA
88840633 TGATAAATTA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
32 2 0.04
33 21 0.43
34 14 0.29
35 12 0.24
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (34 bp):
AATAATATAATAATAGTAATAATAACATAAAAAG
Found at i:88840639 original size:35 final size:34
Alignment explanation
Indices: 88840577--88840644 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
88840567 ATAAAAAGAA
*
88840577 AATATAATTATAGTAATAATAACATAAAATTAATT
1 AATATAATAATAGTAATAATAACAT-AAATTAATT
* *
88840612 AATATAATAATAG-AATGATAATGATAAATTAAT
1 AATATAATAATAGTAATAATAA-CATAAATTAAT
88840645 AAAAAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 15 0.52
35 14 0.48
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.35
Consensus pattern (34 bp):
AATATAATAATAGTAATAATAACATAAATTAATT
Found at i:88840660 original size:28 final size:30
Alignment explanation
Indices: 88840608--88840665 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 30
88840598 ACATAAAATT
* *
88840608 AATTAATATAATAATAGAATGATAATGATA
1 AATTAATATAAAAATAAAATGATAATGATA
88840638 AATTAATA-AAAAATAAAAT-ATAATGATA
1 AATTAATATAAAAATAAAATGATAATGATA
88840666 GTAGTAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 9 0.35
29 9 0.35
30 8 0.31
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (30 bp):
AATTAATATAAAAATAAAATGATAATGATA
Found at i:88840757 original size:29 final size:30
Alignment explanation
Indices: 88840720--88840776 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
88840710 AGCAAAAAAA
* *
88840720 GGGCTAAATT-GAAAATGAAATGAAAAATTT
1 GGGCTAAATTAG-AAATAAAATAAAAAATTT
88840750 GGGC-AAATTAGAAATAAAATAAAAAAT
1 GGGCTAAATTAGAAATAAAATAAAAAAT
88840777 AAAAGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.23
Consensus pattern (30 bp):
GGGCTAAATTAGAAATAAAATAAAAAATTT
Found at i:88843428 original size:22 final size:22
Alignment explanation
Indices: 88843387--88843428 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
88843377 TGTTACTCTA
*
88843387 ATGGGCTAAGGCCTACACTGAT
1 ATGGGCTAAGGCCCACACTGAT
* *
88843409 ATGGGCTTAGGCCCAGACTG
1 ATGGGCTAAGGCCCACACTG
88843429 TTTTGTGCAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (22 bp):
ATGGGCTAAGGCCCACACTGAT
Found at i:88844927 original size:44 final size:44
Alignment explanation
Indices: 88844864--88844949 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
88844854 CTCCATCGCC
* * *
88844864 ATTTCAGAGAGATAGGATTTGTAGTTTCAAT-CTACTCCGCTGTA
1 ATTTCAAAGAGATAAGATTTATAGTTT-AATCCTACTCCGCTGTA
* * *
88844908 ATTTCAAAGATATAAGATTTATGGTTTTATCCTACTCCGCTG
1 ATTTCAAAGAGATAAGATTTATAGTTTAATCCTACTCCGCTG
88844950 CAACTTTAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.38
Consensus pattern (44 bp):
ATTTCAAAGAGATAAGATTTATAGTTTAATCCTACTCCGCTGTA
Found at i:88845046 original size:44 final size:45
Alignment explanation
Indices: 88844978--88846102 Score: 279
Period size: 44 Copynumber: 25.0 Consensus size: 45
88844968 ACCGGCTATG
* * *
88844978 GTAGATTTAATCTGATCCACTGCAACTTCAGAGGTG-TAGGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * *
88845022 GTCGCTTTAATCTGTTCCACTGCAACTTTAG-GGAGATAGGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * *
88845066 GTTGCTTCAATATGCTCCACTGCAACTTCA-AGGAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * *
88845110 ATAACTTTAATCTGCTCTACTGTAACTTCAGA-GAGAT--GAGTTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGA-TTT
* * * *
88845153 -T-GCTATAATAACTTCAATCCATCCCATTGCAACTTTA-AGG-GTATGGGATTTAT
1 GTAGCT-T--TAA--TC--TGC-T-CCACTGCAACTTCAGAGGAG-ATAGGA-TT-T
* * * * * * * *
88845206 GACTTGTACTTGAATCTGTTACACTGCAACTTCTG-GGAAATAAGATTC
1 G--TAG--CTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * *
88845254 GCTATCTTCAA-CTTGTTCCACTGCAACTTTAG-GGAGATAGGGTTT
1 G-TAGCTTTAATC-TGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* ** *
88845299 GTTATGATTT--TCT-CT--ACTTTAACTTCAGA-GAGATAAGATCTCTAATTT
1 G-TA-GCTTTAATCTGCTCCACTGCAACTTCAGAGGAGAT-AG------GATTT
* * * * * * * *
88845347 ATAGCTTCAATCTGTTCCACTGCAATTTCAG-GGAAACAAGATTC
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * * * * * *
88845391 GCTATCTTCAGTCTGCTCTATTGTAATTTCAG-GGAGATAAGACTT
1 G-TAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* *
88845436 GT--CATTTCAACCTGCTCCACTGCAACTTCAG-GGAGATAAGG-CTT
1 GTAGC-TTT-AATCTGCTCCACTGCAACTTCAGAGGAGAT-AGGATTT
* * * *
88845480 ATAGCTTTAATCTGCTCTACTGCAACTTCA-AAGAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
** * ** * * * * *
88845524 ACCATCTTCGATATACTCCACTGCAACTTTAG-GGAGATAAGATCT
1 -GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * * ** * *
88845569 ATAACTTCAACCTGCTCTACTATAACTTTAGA-GAGATAAGG-CTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGAT-AGGATTT
* * * * *
88845613 ATAGCTTTAATTTGCTCTACTGCAACTTCAGA-GAGTTAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * *
88845657 GCTATC-TTAGATCTACTCCACTACAACTTCAG-GGAGATAAGATCT
1 G-TAGCTTTA-ATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * *
88845702 ATAACTTCAATCTGCTCCACTGCAACTTCAG-GGAGATAAGACTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * *
88845746 ATAGCTTTAATCTGCTCTACTGTAACTTCAGA-GAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * * *
88845790 GCTATCTTCAATCTACTCCACTACAACTTCAGA-GAGATAAGACTT
1 G-TAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * *
88845835 ATAACTTCAACCTGCTCCACTGCAACTTTAG-GGAGATAAGG--TT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGAT-AGGATTT
* * * * * **
88845878 -T-GCTATGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATAATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAG-G---AGA--TAGGATTT
* * * * * *
88845927 ATAGCTTCAATTTGTTCCACTGCAACTTCAG-GGAAATAAGATTTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGA-TTT
* * * * * * ** *
88845972 CTATCTTCAGTCTGCTCCACTGCAACTTCTG-GGAGACAAAACTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * * *
88846016 GTAACTTCAACCTGCTCCATTGCAACTTTAG-GGAGATAAGG-TTC
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGAT-AGGATTT
* * *
88846060 GTGGCTTTAATCTGCTCCACTGTAACTTCAG-GGAGATAAGATT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATT
88846103 CGCCATAATA
Statistics
Matches: 789, Mismatches: 214, Indels: 156
0.68 0.18 0.13
Matches are distributed among these distances:
41 36 0.05
42 9 0.01
43 18 0.02
44 393 0.50
45 215 0.27
46 13 0.02
47 5 0.01
48 10 0.01
49 9 0.01
50 32 0.04
51 34 0.04
52 5 0.01
53 1 0.00
54 2 0.00
56 3 0.00
57 1 0.00
58 1 0.00
59 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (45 bp):
GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
Found at i:88845521 original size:133 final size:134
Alignment explanation
Indices: 88845345--88845917 Score: 714
Period size: 133 Copynumber: 4.3 Consensus size: 134
88845335 GATCTCTAAT
* * * * * * * * *
88845345 TTATAGCTTCAATCTGTTCCACTGCAATTTCAGGGAAACAAGATTCGCTATCTTCAG-TCTGCTC
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
* * ** * * * *
88845409 TATTGTAATTTCAGGGAGATAAGA-CTTGTCATTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
66 CACTACAACTTCAGGGAGATAAGATC-TATAACTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
88845473 AAGGC
130 AAGGC
* * * *
88845478 TTATAGCTTTAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTACCATCTTC-GATATACTC
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
* * * ** * *
88845542 CACTGCAACTTTAGGGAGATAAGATCTATAACTTCAACCTGCTCTACTATAACTTTAGAGAGATA
66 CACTACAACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
88845607 AGGC
131 AGGC
* *
88845611 TTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAGTTAAGATTTGCTATCTT-AGATCTACTC
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
*
88845675 CACTACAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
66 CACTACAACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
*
88845740 AGAC
131 AGGC
*
88845744 TTATAGCTTTAATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGCTATCTTCA-ATCTACTC
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
* *
88845808 CACTACAACTTCAGAGAGATAAGA-CTTATAACTTCAACCTGCTCCACTGCAACTTTAGGGAGAT
66 CACTACAACTTCAGGGAGATAAGATC-TATAACTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
88845872 AAGG-
130 AAGGC
* * * *
88845876 TT-T-GCTATGATCTACTCTACTACAACTTCAGAGAGATAAGAT
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
88845918 CTATAATTTA
Statistics
Matches: 382, Mismatches: 53, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
130 34 0.09
131 1 0.00
132 4 0.01
133 341 0.89
134 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (134 bp):
TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
CACTACAACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
AGGC
Found at i:88845604 original size:89 final size:88
Alignment explanation
Indices: 88845343--88846100 Score: 506
Period size: 89 Copynumber: 8.5 Consensus size: 88
88845333 AAGATCTCTA
* ** * * * * * *
88845343 ATTTATAGCTTCAATCTGTTCCACTGCAATTTCAGGGAAACAAGA-TTCGCTATCTTCAGTCTGC
1 ATTTATATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTT--ATAACTTCAATCTGC
* * * *
88845407 TCTATTGTAATTTCAGGGAGATAAG
64 TCTACTGCAACTTCAGAGAGATAAG
* * * * * * *
88845432 ACTTGTCAT-TTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTATAGCTTTAATCTGCT
1 ATTTAT-ATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGCT
*
88845496 CTACTGCAACTTCAAAGAGATAAG
65 CTACTGCAACTTCAGAGAGATAAG
* * * * *
88845520 ATTTACCATCTTCGATATACTCCACTGCAACTTTAGGGAGATAAGA-TCTATAACTTCAACCTGC
1 ATTTA-TATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACT-TATAACTTCAATCTGC
** *
88845584 TCTACTATAACTTTAGAGAGATAAG
64 TCTACTGCAACTTCAGAGAGATAAG
** * * * * * * * * * * *
88845609 GCTTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAGTTAAGATTTGCTATCTT-AGATCTAC
1 ATTTATATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTT-ATAACTTCA-ATCTGC
* * *
88845673 TCCACTACAACTTCAGGGAGATAAG
64 TCTACTGCAACTTCAGAGAGATAAG
* * * * *
88845698 ATCTATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTATAGCTTTAATCTGCTC
1 ATTTATATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGCTC
*
88845763 TACTGTAACTTCAGAGAGATAAG
66 TACTGCAACTTCAGAGAGATAAG
* * * *
88845786 ATTTGCTATCTTCAATCTACTCCACTACAACTTCAGAGAGATAAGACTTATAACTTCAACCTGCT
1 ATTT-ATATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGCT
* * *
88845851 CCACTGCAACTTTAGGGAGATAAG
65 CTACTGCAACTTCAGAGAGATAAG
* * * * * *
88845875 -GTT-T-GCTAT-GATCTACTCTACTACAACTTCAGAGAGATAAGATCTATAATTTATAGCTTCA
1 ATTTATATCT-TCAATCTACTCCACTGCAACTTCAGGGAGATAAGA-CT-T-A--TA-A-CTTCA
* * * * *
88845936 ATTTGTTCCACTGCAACTTCAGGGAAATAAG
58 ATCTGCTCTACTGCAACTTCAGAGAGATAAG
* * * * * * * *
88845967 ATTTTCTATCTTCAGTCTGCTCCACTGCAACTTCTGGGAGACAAAACTTGTAACTTCAACCTGCT
1 A-TTTATATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGCT
* * * *
88846032 CCATTGCAACTTTAGGGAGATAAG
65 CTACTGCAACTTCAGAGAGATAAG
* ** ** * * *
88846056 GTTCGTGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGA
1 ATTTATATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA
88846101 TTCGCCATAA
Statistics
Matches: 524, Mismatches: 122, Indels: 47
0.76 0.18 0.07
Matches are distributed among these distances:
85 33 0.06
86 4 0.01
87 1 0.00
88 140 0.27
89 273 0.52
90 6 0.01
91 3 0.01
92 31 0.06
94 3 0.01
95 4 0.01
96 26 0.05
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (88 bp):
ATTTATATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGCTC
TACTGCAACTTCAGAGAGATAAG
Found at i:88853831 original size:52 final size:54
Alignment explanation
Indices: 88853739--88853844 Score: 189
Period size: 52 Copynumber: 2.0 Consensus size: 54
88853729 TTGTAAAGTT
*
88853739 TGTTAAATATATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
1 TGTTAAATAGATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
88853793 TGTTAAATAGATGGTAA-T-TGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
1 TGTTAAATAGATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
88853845 ATTTGATTAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 34 0.67
53 1 0.02
54 16 0.31
ACGTcount: A:0.40, C:0.02, G:0.25, T:0.34
Consensus pattern (54 bp):
TGTTAAATAGATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
Found at i:88862233 original size:34 final size:34
Alignment explanation
Indices: 88862177--88862259 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
88862167 ATATGCATTT
* ** *
88862177 CTGATACTG-TACTGAATTGGGCTAAGGCCCATA
1 CTGATACTGCTACTGTAGCGGGCTAAGGCCCACA
88862210 CTGATACTGCTACTGTAGCGGGCTAAGGCCCACA
1 CTGATACTGCTACTGTAGCGGGCTAAGGCCCACA
**
88862244 CTGATTTTGCTACTGT
1 CTGATACTGCTACTGT
88862260 TAAGGGCTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 9 0.21
34 34 0.79
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (34 bp):
CTGATACTGCTACTGTAGCGGGCTAAGGCCCACA
Found at i:88862267 original size:34 final size:34
Alignment explanation
Indices: 88862177--88862280 Score: 104
Period size: 34 Copynumber: 3.1 Consensus size: 34
88862167 ATATGCATTT
* ** *
88862177 CTGATACTG-TACTGAATTGGGCTAAGGCCCATA
1 CTGATACTGCTACTGTAGAGGGCTAAGGCCCACA
*
88862210 CTGATACTGCTACTGTAGCGGGCTAAGGCCCACA
1 CTGATACTGCTACTGTAGAGGGCTAAGGCCCACA
** * *
88862244 CTGATTTTGCTACTGTTA-AGGGCTTAGGCCCAGA
1 CTGATACTGCTACTG-TAGAGGGCTAAGGCCCACA
88862278 CTG
1 CTG
88862281 GTTGCACTGC
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
33 9 0.15
34 49 0.82
35 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (34 bp):
CTGATACTGCTACTGTAGAGGGCTAAGGCCCACA
Found at i:88868662 original size:47 final size:48
Alignment explanation
Indices: 88868553--88868679 Score: 140
Period size: 46 Copynumber: 2.7 Consensus size: 48
88868543 AGATGGGTGC
* *
88868553 TAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAGAAGTAAGCT
1 TAGTGTAAGACGTGTCTGGGACATGGCATCGACATCGAGAAGTAAGCT
* *
88868600 T-GTGTAAGA-GATGTCTAGGACATGGCATCGACAT-GAGATA-TGAG-T
1 TAGTGTAAGACG-TGTCTGGGACATGGCATCGACATCGAGA-AGTAAGCT
*
88868645 TAGTGTAAGACCGTGTCTGGGACATGGGATCGACA
1 TAGTGTAAGA-CGTGTCTGGGACATGGCATCGACA
88868680 CCTTACCCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
45 2 0.03
46 34 0.50
47 31 0.46
48 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (48 bp):
TAGTGTAAGACGTGTCTGGGACATGGCATCGACATCGAGAAGTAAGCT
Found at i:88870184 original size:25 final size:25
Alignment explanation
Indices: 88870156--88870206 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
88870146 TTATATAATG
88870156 ATTAATTTTATTTGATTTGTGTTAT
1 ATTAATTTTATTTGATTTGTGTTAT
88870181 ATTAATTTTATTTGATTTGTGTTAT
1 ATTAATTTTATTTGATTTGTGTTAT
88870206 A
1 A
88870207 AATTGTAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.63
Consensus pattern (25 bp):
ATTAATTTTATTTGATTTGTGTTAT
Found at i:88874927 original size:25 final size:25
Alignment explanation
Indices: 88874890--88874941 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
88874880 AAGGAATTCG
88874890 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
88874915 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
88874940 CA
1 CA
88874942 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:88875161 original size:40 final size:40
Alignment explanation
Indices: 88875117--88875348 Score: 401
Period size: 40 Copynumber: 5.8 Consensus size: 40
88875107 CCAGCATGAT
* * * *
88875117 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
88875157 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
88875197 TGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
88875237 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
88875277 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
88875317 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
88875349 CTCAATTCTC
Statistics
Matches: 182, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:88885031 original size:79 final size:80
Alignment explanation
Indices: 88884868--88885047 Score: 188
Period size: 79 Copynumber: 2.3 Consensus size: 80
88884858 TCGTTCGAAT
* * * *
88884868 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTGGGGACTTAACCCGGATTT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTGCGGACTTAACCCGGATAT
* *
88884932 AGTAACTCGCACCAAT
65 AGTAACTAGCACCAAA
* * * **
88884948 GCCTTTGGG-CTTAGCTCGGAATTAGTATCTCGCACAAATGCCTT-CGGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTGCGGA-CTTAACCCGGATAT
* *
88885011 GGTCACTTAGCA-CAAA
65 AGTAAC-TAGCACCAAA
88885027 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
88885048 CATCATTCGA
Statistics
Matches: 81, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
78 3 0.04
79 55 0.68
80 23 0.28
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTGCGGACTTAACCCGGATATA
GTAACTAGCACCAAA
Found at i:88885047 original size:40 final size:40
Alignment explanation
Indices: 88884865--88885047 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
88884855 TACTCGTTCG
* *
88884865 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
88884905 AATGCCTTGGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
88884945 AATGCCTTTGGG-CTTAGCTCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
* * * *
88884984 AATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACA
88885025 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
88885048 CATCATTCGA
Statistics
Matches: 117, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 74 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:88894160 original size:80 final size:79
Alignment explanation
Indices: 88894046--88894279 Score: 310
Period size: 80 Copynumber: 2.9 Consensus size: 79
88894036 TTTCTAAATC
* *
88894046 AGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTCAGTAATTTCACAAACTAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTC-GTAATTTTACAAACCAG-GGTATTTT
88894111 -GTAATTTTACAAACT
64 AGTAATTTTACAAACT
88894126 AGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTCGATAATTTTACAAACCAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTCG-TAATTTTACAAACCA-GGGTATTTT
* *
88894191 AGCAATTTTACAGACT
64 AGTAATTTTACAAACT
* * * * **
88894207 A-GGGTATTTTTGGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTGTAAACCAGGGTATTTT
1 AGGGGTA-TTTTGGTAATTTTACAAATTGAGAGTA-TTTCGTAATTTTACAAACCAGGGTATTTT
88894271 AGTAATTTT
64 AGTAATTTT
88894280 GTAAATCGAG
Statistics
Matches: 138, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
79 1 0.01
80 81 0.59
81 52 0.38
82 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (79 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTCGTAATTTTACAAACCAGGGTATTTTAG
TAATTTTACAAACT
Found at i:88894409 original size:27 final size:27
Alignment explanation
Indices: 88894025--88894415 Score: 195
Period size: 27 Copynumber: 14.6 Consensus size: 27
88894015 GGCTGTCACA
* * *
88894025 ATTTTTGTAACTTTCTAAATC-AGGGGT
1 ATTTTGGTAATTTTATAAATCGA-GGGT
* * *
88894052 ATTTTGGTAATTTTACAAATTGAGAGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
** * * *
88894079 ATTTCAGTAATTTCACAAA-CTAGTGGT
1 ATTTTGGTAATTTTATAAATCGAG-GGT
* *
88894106 ATTTT-GTAATTTTACAAA-CTAGGGGT
1 ATTTTGGTAATTTTATAAATCGA-GGGT
* * *
88894132 ATTTTGGTAATTTTACAAATTGAGAGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
* * * *
88894159 ATTTCGATAATTTTACAAA-CCAGGGGT
1 ATTTTGGTAATTTTATAAATCGA-GGGT
* * * * *
88894186 ATTTTAGCAATTTTACAGA-CTAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
88894212 ATTTTTGGTAATTTTACT-AATCGAGGGT
1 A-TTTTGGTAATTTTA-TAAATCGAGGGT
* *
88894240 ATTTTGGTAATTTTGTAAA-CCAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
* *
88894266 ATTTTAGTAATTTTGTAAATCGAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
***** * *
88894293 AAAACAGTAATTCTATAAATCAAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
***** * *
88894320 AAAACAGTAATTCTATAAATCAAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
*** * *
88894347 AAAATGGTAATTCTATAAATTGAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
****
88894374 AAAACGGTAATTTTATAAATCGAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
*
88894401 ACTTTGGTAATTTTA
1 ATTTTGGTAATTTTA
88894416 CAATTTGAGG
Statistics
Matches: 298, Mismatches: 55, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
26 56 0.19
27 233 0.78
28 9 0.03
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (27 bp):
ATTTTGGTAATTTTATAAATCGAGGGT
Found at i:88910990 original size:25 final size:25
Alignment explanation
Indices: 88910952--88911021 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
88910942 AGGAAGTGCT
* *
88910952 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
88910977 AAAAGGGTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
88911002 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
88911022 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:88911034 original size:24 final size:24
Alignment explanation
Indices: 88910951--88911046 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
88910941 GAGGAAGTGC
*
88910951 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* * *
88910976 GAAAAGGGTTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
88911000 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
88911024 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
88911047 ATATGATAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
23 5 0.09
24 11 0.19
25 41 0.71
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:88911275 original size:30 final size:30
Alignment explanation
Indices: 88911241--88911323 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
88911231 CGCTTATAGT
88911241 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
*
88911271 AAAGGCTTCAGTCCAGTGATATGATTTATGA
1 AAAGGCTTC-GGCCAGTGATATGATTTATGA
88911302 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
88911324 TCGAGGCTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 15 0.31
31 34 0.69
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:88913701 original size:27 final size:27
Alignment explanation
Indices: 88913671--88913762 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
88913661 ATTGCCAAAG
* *
88913671 TACCCTCGATTTATAGACTCACTATTT
1 TACCCTCGATTTACAGAATCACTATTT
* *
88913698 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATCACTATTT
* * **
88913725 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATCACTATTT
88913752 TACCCTCGATT
1 TACCCTCGATT
88913763 GTGAAATTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATCACTATTT
Found at i:88913896 original size:27 final size:27
Alignment explanation
Indices: 88913761--88913906 Score: 143
Period size: 27 Copynumber: 5.4 Consensus size: 27
88913751 TTACCCTCGA
* *
88913761 TTGTGAAATTACTAAAATACCCCT-AT
1 TTGTAAAATTACCAAAATACCCCTAAT
** * *
88913787 AGGGTAGAATTACCAAAATACCCCTAGT
1 -TTGTAAAATTACCAAAATACCCCTAAT
* **
88913815 TTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAAT
* *
88913842 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AAT
88913869 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAAT
**
88913896 TTAAAAAATTA
1 TTGTAAAATTA
88913907 TAGAAATACC
Statistics
Matches: 96, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.03
27 88 0.92
28 5 0.05
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAAT
Found at i:88913968 original size:27 final size:27
Alignment explanation
Indices: 88913895--88913980 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
88913885 ATACCCCTAA
* *
88913895 TTTAAAAAATTATAGAAATACCATTGAC
1 TTTACAAAATTATAGAAATACCATTG-G
88913923 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
*
88913951 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
88913978 TTT
1 TTT
88913981 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 22 0.43
28 7 0.14
29 22 0.43
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:88914946 original size:25 final size:24
Alignment explanation
Indices: 88914908--88914977 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
88914898 AGGAAGTGCT
*
88914908 AAAAGGGCTATGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTTACC
* *
88914932 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCTAGTTTACC
88914957 AAATAGGGCTTTGCCCTAGTT
1 AAA-AGGGCTTTGCCCTAGTT
88914978 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 3 0.08
25 37 0.93
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTACC
Found at i:88914990 original size:24 final size:24
Alignment explanation
Indices: 88914907--88914990 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
88914897 GAGGAAGTGC
* *
88914907 TAAAAGGGCTATGCCCTAGTTTACC
1 TAAAAGGGCTTTGCCCTAGTTTA-T
* *
88914932 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCTAGTTTAT
*
88914956 CAAATAGGGCTTTGCCCTAG-TTAT
1 TAAA-AGGGCTTTGCCCTAGTTTAT
88914980 TAAAAGAGGCT
1 TAAAAG-GGCT
88914991 AGGCCTCCAA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 2 0.04
24 14 0.28
25 34 0.68
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCTAGTTTAT
Found at i:88915247 original size:31 final size:30
Alignment explanation
Indices: 88915197--88915279 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 30
88915187 CGCTTACAGT
88915197 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
88915227 AAAGGCTTCGGCGCAGTGATATGATTTATGA
1 AAAGGCTTCGGC-CAGTGATATGATTTATGA
88915258 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
88915280 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
30 17 0.33
31 33 0.65
32 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:88915351 original size:34 final size:33
Alignment explanation
Indices: 88915307--88915377 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
88915297 CTTAGGCCCA
** *
88915307 TACTACTACTGTTTAAGGGCTAAGGCCCAGATTG
1 TACTACTACTGAAT-AGGGCTAAGGCCCAGAATG
* **
88915341 TACTATTACTGAATAGGGCTTTGGCCCAGAATG
1 TACTACTACTGAATAGGGCTAAGGCCCAGAATG
88915374 TACT
1 TACT
88915378 GACACTGTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
33 20 0.65
34 11 0.35
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (33 bp):
TACTACTACTGAATAGGGCTAAGGCCCAGAATG
Found at i:88920813 original size:23 final size:23
Alignment explanation
Indices: 88920783--88920829 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
88920773 ATACAAGAAA
88920783 TGAATTGTTAGCTCAACGGGGTT
1 TGAATTGTTAGCTCAACGGGGTT
88920806 TGAATTGTTAGCTCAACGGGGTT
1 TGAATTGTTAGCTCAACGGGGTT
88920829 T
1 T
88920830 ACTAAGGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.13, G:0.30, T:0.36
Consensus pattern (23 bp):
TGAATTGTTAGCTCAACGGGGTT
Found at i:88932033 original size:28 final size:28
Alignment explanation
Indices: 88931970--88932180 Score: 327
Period size: 28 Copynumber: 7.5 Consensus size: 28
88931960 ATATTAAGTC
* *
88931970 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
88931997 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
88932025 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
88932053 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
88932081 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
88932109 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* * *
88932137 CGCACACTTAGTGCTGTACA-ATTTAAACC
1 CGCACACTTAGTGC--TACATAATCAAACT
88932166 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
88932181 GTACAATTTA
Statistics
Matches: 174, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
27 23 0.13
28 127 0.73
29 20 0.11
30 4 0.02
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:88940411 original size:28 final size:28
Alignment explanation
Indices: 88940348--88940520 Score: 303
Period size: 28 Copynumber: 6.2 Consensus size: 28
88940338 ATATTAAGTC
* *
88940348 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
88940375 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
88940403 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
88940431 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
88940459 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
88940487 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
88940515 CGCACA
1 CGCACA
88940521 TGCGTACATT
Statistics
Matches: 141, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
27 22 0.16
28 119 0.84
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:88942901 original size:43 final size:43
Alignment explanation
Indices: 88942789--88942903 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 43
88942779 TCGAAACCAC
* * *
88942789 TGTCCCAGACAGGGTCTTACACGAAATCATATAACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCATATAACAATGCCAA
* *
88942832 TGTCCTAGACATGGTCTTACACGTAATCATA-ATACAATGTCAA
1 TGTCCCAGACATGGTCTTACACGTAATCATATA-ACAATGCCAA
*
88942875 TGTCCCAGACATGGTCTTACATGTAATCA
1 TGTCCCAGACATGGTCTTACACGTAATCA
88942904 CATCTCGGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
42 1 0.02
43 63 0.98
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGTAATCATATAACAATGCCAA
Found at i:88955415 original size:14 final size:13
Alignment explanation
Indices: 88955389--88955428 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
88955379 GTTTAAATAA
*
88955389 TTTTATTTATTAT
1 TTTTATTTTTTAT
88955402 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
88955416 TTTTATCTTTTTA
1 TTTTAT-TTTTTA
88955429 AAACTACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:88963020 original size:92 final size:93
Alignment explanation
Indices: 88962855--88963029 Score: 230
Period size: 92 Copynumber: 1.9 Consensus size: 93
88962845 AGAAGCCGAC
* * * *
88962855 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATTGGTGTCGATGCCATCTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACT-GATCTCATATATCGGTGCCGATGCCATCTCCCAGACA
88962920 GGTCTTACACTAACACACCACAAGCTGAG
65 GGTCTTACACTAACACACCACAAGCTGAG
* *
88962949 GCCATGTCCCAGACA-GGTCTTACACT-ATCTTATATATCGTGTGGCCGATG-CATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACACTGATCTCATATATCG-GT-GCCGATGCCATCTCCCAGAC
* *
88963011 ATGTCTTACACTAGCACAC
64 AGGTCTTACACTAACACAC
88963030 ATATCACCCA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
91 9 0.13
92 30 0.42
93 17 0.24
94 15 0.21
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (93 bp):
GCCATGTCCCAGACATGGTCTTACACTGATCTCATATATCGGTGCCGATGCCATCTCCCAGACAG
GTCTTACACTAACACACCACAAGCTGAG
Found at i:88965840 original size:16 final size:16
Alignment explanation
Indices: 88965819--88965857 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
88965809 ATCGGCAAAG
88965819 GCCGAAATGCCAAAAA
1 GCCGAAATGCCAAAAA
*
88965835 GCCGAAATGCCGAAAA
1 GCCGAAATGCCAAAAA
*
88965851 TCCGAAA
1 GCCGAAA
88965858 GTTTGGCCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.26, G:0.21, T:0.08
Consensus pattern (16 bp):
GCCGAAATGCCAAAAA
Found at i:88966136 original size:57 final size:57
Alignment explanation
Indices: 88966069--88966215 Score: 149
Period size: 57 Copynumber: 2.6 Consensus size: 57
88966059 GTGAGCATGA
* *
88966069 ATATAATGTGATTTGGGCTAGATGGGCCATAT-AA-ATGAGATTGGGCCTAATGGGTC
1 ATATAATGTGATTTGGGCTAGATGGGCCATATGAACATGA-ATTGGGCCGAATGGGGC
* * *
88966125 ATATGAATGTGAATTGGGCCT-GATGGGCCATATGAACGTGAATTGGGCCGGATGGGGC
1 ATAT-AATGTGATTTGGG-CTAGATGGGCCATATGAACATGAATTGGGCCGAATGGGGC
* * * *
88966183 ATCTAAATGAGATTAGGCCTAGA-GGGCCATATG
1 ATAT-AATGTGATTTGGGCTAGATGGGCCATATG
88966216 CATGTATGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
56 4 0.05
57 36 0.48
58 32 0.43
59 3 0.04
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.27
Consensus pattern (57 bp):
ATATAATGTGATTTGGGCTAGATGGGCCATATGAACATGAATTGGGCCGAATGGGGC
Found at i:88966150 original size:29 final size:29
Alignment explanation
Indices: 88966069--88966220 Score: 134
Period size: 29 Copynumber: 5.3 Consensus size: 29
88966059 GTGAGCATGA
*
88966069 ATAT-AATGTGATTTGGG-CTAGATGGGCC
1 ATATGAATGTGAATTGGGCCT-GATGGGCC
* * * *
88966097 ATATAAATGAG-ATTGGGCCTAATGGGTC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
88966125 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
88966154 ATATGAACGTGAATTGGGCCGGATGGGGC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * * *
88966183 ATCTAAATGAG-ATTAGGCCTAGA-GGGCC
1 ATATGAATGTGAATTGGGCCT-GATGGGCC
*
88966211 ATATGCATGT
1 ATATGAATGT
88966221 ATGTAGGCGT
Statistics
Matches: 98, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
28 41 0.42
29 57 0.58
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:88969198 original size:27 final size:27
Alignment explanation
Indices: 88969158--88969269 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
88969148 AGGAAGCGTC
*
88969158 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
88969185 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
88969212 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
88969240 CTAGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
88969266 CTGG
1 CTGG
88969270 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:88969264 original size:54 final size:54
Alignment explanation
Indices: 88969158--88969269 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
88969148 AGGAAGCGTC
* * *
88969158 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
* * *
88969212 CTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTT
88969266 CTGG
1 CTGG
88969270 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:88970594 original size:42 final size:42
Alignment explanation
Indices: 88970547--88970633 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
88970537 ATGCTAAAAG
* * **
88970547 TATGTATAATTGTGTTGTATGTCTGGTAATGCTCCTTAACCC
1 TATGTATAATTATGTTGTAAGTCCAGTAATGCTCCTTAACCC
88970589 TATGTATAATTATGTTGTAAGTCCAGTAATGCTCCTTAACCC
1 TATGTATAATTATGTTGTAAGTCCAGTAATGCTCCTTAACCC
88970631 TAT
1 TAT
88970634 TCCGGCATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.41
Consensus pattern (42 bp):
TATGTATAATTATGTTGTAAGTCCAGTAATGCTCCTTAACCC
Found at i:88973391 original size:20 final size:20
Alignment explanation
Indices: 88973362--88973400 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
88973352 TGATTGGTTG
* *
88973362 TGATTGAATTGTATTTGAAT
1 TGATTAAATTGTATGTGAAT
88973382 TGATTAAATTGTATGTGAA
1 TGATTAAATTGTATGTGAA
88973401 ATATATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
TGATTAAATTGTATGTGAAT
Found at i:88975082 original size:22 final size:21
Alignment explanation
Indices: 88975042--88975082 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
88975032 AAACATTTTC
*
88975042 AGATTAAATCAAATAAAAGAA
1 AGATTAAACCAAATAAAAGAA
*
88975063 AGATTAAACCCAAATCAAAG
1 AGATTAAA-CCAAATAAAAG
88975083 TGGCTGTCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.61, C:0.12, G:0.10, T:0.17
Consensus pattern (21 bp):
AGATTAAACCAAATAAAAGAA
Found at i:88981025 original size:15 final size:15
Alignment explanation
Indices: 88981005--88981060 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
88980995 AATTATAATA
88981005 AAAATAATAAGAAAT
1 AAAATAATAAGAAAT
88981020 AAAATAA-AAGTAAAT
1 AAAATAATAAG-AAAT
*
88981035 AAATGAAAAATAAGAAAT
1 -AA--AATAATAAGAAAT
*
88981053 CAAATAAT
1 AAAATAAT
88981061 TGAATATGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
14 3 0.09
15 16 0.48
16 2 0.06
17 1 0.03
18 8 0.24
19 3 0.09
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.20
Consensus pattern (15 bp):
AAAATAATAAGAAAT
Found at i:88987071 original size:26 final size:26
Alignment explanation
Indices: 88987041--88987148 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
88987031 TGAAATGCCC
88987041 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
88987067 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
88987093 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
88987119 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
88987145 ATCA
1 ATCA
88987149 ATTTTTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:88992227 original size:32 final size:34
Alignment explanation
Indices: 88992191--88992255 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
88992181 TAACAGTGGT
*
88992191 ACTGGACCAGAGCCC-TT-TTCAGATTACAATAA
1 ACTGGACCAGAGCCCTTTATTCAGATAACAATAA
* **
88992223 ACTGGGCCTTAGCCCTTTATTCAGATAACAATA
1 ACTGGACCAGAGCCCTTTATTCAGATAACAATA
88992256 TGGCCCATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 12 0.44
33 2 0.07
34 13 0.48
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (34 bp):
ACTGGACCAGAGCCCTTTATTCAGATAACAATAA
Found at i:88994131 original size:26 final size:26
Alignment explanation
Indices: 88994101--88994208 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
88994091 TGAAATGCCC
*
88994101 ATCATGGAACATTTACCTAACCCAAT
1 ATCATGGAACATTTACCTAACCCATT
*
88994127 ATCATGGAACATTTACCTAACACATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
88994153 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
88994179 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
88994205 ATCA
1 ATCA
88994209 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:88996483 original size:18 final size:17
Alignment explanation
Indices: 88996462--88996495 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
88996452 TAGATTTTCC
*
88996462 AAAATAACTTTTTTTTGA
1 AAAATAA-TTTCTTTTGA
88996480 AAAATAATTTCTTTTG
1 AAAATAATTTCTTTTG
88996496 TTTTTATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (17 bp):
AAAATAATTTCTTTTGA
Found at i:88998925 original size:18 final size:19
Alignment explanation
Indices: 88998904--88998944 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
88998894 ACTTATGTAG
88998904 TTTT-CAATTTTGAAATAT
1 TTTTACAATTTTGAAATAT
* *
88998922 TTTTATAATTTTGAATTAT
1 TTTTACAATTTTGAAATAT
88998941 TTTT
1 TTTT
88998945 TGACGTGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTACAATTTTGAAATAT
Found at i:89003769 original size:43 final size:42
Alignment explanation
Indices: 89003641--89003757 Score: 148
Period size: 41 Copynumber: 2.8 Consensus size: 42
89003631 ATATCGAGAA
* *
89003641 ATCGATGCCACTGTCCCAGACAG-GGTCTTACACGAATCAAAT
1 ATCGATGCCAATGTCCCAGAC-GTGGTCTTACACGAATCACAT
* * *
89003683 A-CGATGCCGATGTCCCAGACATGGTGTTACACGTAATCACAT
1 ATCGATGCCAATGTCCCAGACGTGGTCTTACACG-AATCACAT
*
89003725 ATCGATGCCAATGTCCTAGACGTGGTCTTACAC
1 ATCGATGCCAATGTCCCAGACGTGGTCTTACAC
89003758 AAGAACACAT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
41 27 0.43
42 9 0.14
43 27 0.43
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (42 bp):
ATCGATGCCAATGTCCCAGACGTGGTCTTACACGAATCACAT
Found at i:89011840 original size:41 final size:43
Alignment explanation
Indices: 89011770--89011884 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 43
89011760 ATATCGATAA
* *
89011770 ATCGATGCC-ACTTCCTAGACA-AGGTCTTACACG-AATCAAAT
1 ATCGATGCCAACGTCCCAGACATA-GTCTTACACGTAATCAAAT
* * *
89011811 A-CGATGCCGATGTCCCAGACAT-GATCTTACACGTAATCACAT
1 ATCGATGCCAACGTCCCAGACATAG-TCTTACACGTAATCAAAT
89011853 ATCGATGCCAACGTCCCAGACATAGTCTTACA
1 ATCGATGCCAACGTCCCAGACATAGTCTTACA
89011885 AGAGGACACA
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
40 8 0.13
41 19 0.31
42 8 0.13
43 26 0.42
44 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
ATCGATGCCAACGTCCCAGACATAGTCTTACACGTAATCAAAT
Found at i:89017082 original size:28 final size:28
Alignment explanation
Indices: 89017050--89017177 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
89017040 ATAGTAAGTC
*
89017050 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
89017078 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
89017107 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
89017135 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
89017164 CGCACACTTAGTGC
1 CGCACACTTAGTGC
89017178 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:89017140 original size:57 final size:57
Alignment explanation
Indices: 89017049--89017177 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
89017039 TATAGTAAGT
*
89017049 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
89017106 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
89017163 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
89017178 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:89022997 original size:49 final size:49
Alignment explanation
Indices: 89022847--89023016 Score: 139
Period size: 49 Copynumber: 3.5 Consensus size: 49
89022837 GTACGATGTC
* * * * * * *
89022847 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAT-CTA-AGTT
1 GATGCCATGTCCCAGACA-AGTCTTACATTGGCTCTCATATATTAGGGTT
* ** * **
89022895 GATGCCATGTCGCAGACAAGTCTTACATTTTCTTTCATATATTAGGGCC
1 GATGCCATGTCCCAGACAAGTCTTACATTGGCTCTCATATATTAGGGTT
* * *
89022944 GATGCCACGTCCCAGACAAGTCTTACATTGGCTCTCATCTA-TCGGTGTT
1 GATGCCATGTCCCAGACAAGTCTTACATTGGCTCTCATATATTAGG-GTT
* *
89022993 GATGCCATGTTCCAGACAGGTCTT
1 GATGCCATGTCCCAGACAAGTCTT
89023017 GAACTAACAC
Statistics
Matches: 94, Mismatches: 25, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
47 16 0.17
48 20 0.21
49 58 0.62
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAAGTCTTACATTGGCTCTCATATATTAGGGTT
Found at i:89023179 original size:46 final size:46
Alignment explanation
Indices: 89023082--89023198 Score: 125
Period size: 46 Copynumber: 2.5 Consensus size: 46
89023072 CATATCTCGA
* * * *
89023082 GGCCAATGCATGTCCCACACATGTCTTACACTGGCTCTCGTCTCAAT
1 GGCCGATGCATGTCTCAGACATGTCTTACACTGGCTCTCG-ATCAAT
89023129 -GCCGATGCATGTCTCAGACATGTCTTACACTGGCTCTC-AT-AATGT
1 GGCCGATGCATGTCTCAGACATGTCTTACACTGGCTCTCGATCAA--T
*
89023174 GGCCGATGTATGT-TCCAGACATGTC
1 GGCCGATGCATGTCT-CAGACATGTC
89023199 CTATACTAGC
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
45 2 0.03
46 56 0.92
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
GGCCGATGCATGTCTCAGACATGTCTTACACTGGCTCTCGATCAAT
Found at i:89030903 original size:19 final size:19
Alignment explanation
Indices: 89030867--89030904 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
89030857 ACTTGAGACA
*
89030867 AAATTACCGATACTTTTTG
1 AAATTACCAATACTTTTTG
89030886 AAATGTACCAATACTTTTT
1 AAAT-TACCAATACTTTTT
89030905 TATTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (19 bp):
AAATTACCAATACTTTTTG
Found at i:89035481 original size:13 final size:11
Alignment explanation
Indices: 89035445--89035475 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
89035435 CTGCCCGTAT
89035445 TAATTTTTATA
1 TAATTTTTATA
*
89035456 TTATTTTTATA
1 TAATTTTTATA
89035467 TAATTTTTA
1 TAATTTTTA
89035476 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:89036011 original size:29 final size:30
Alignment explanation
Indices: 89035950--89036011 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
89035940 ACTTATTTTA
*
89035950 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTAGTTTAAAGGCAT
89035980 TTGTTAATTTTGTTATT-GTTTAAAGGCAT
1 TTGTTAATTTTGTTATTAGTTTAAAGGCAT
89036009 TTG
1 TTG
89036012 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTAGTTTAAAGGCAT
Found at i:89036373 original size:22 final size:22
Alignment explanation
Indices: 89036348--89036390 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
89036338 TATCCAAACA
89036348 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
*
89036370 ATAATAATAAAATAGTAGCAA
1 ATAATAACAAAATAGTAGCAA
89036391 AATAGGAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:89036403 original size:22 final size:22
Alignment explanation
Indices: 89036347--89036403 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
89036337 ATATCCAAAC
* *
89036347 AATAATAACAAAATAGTAGCAA
1 AATAAGAAGAAAATAGTAGCAA
* * *
89036369 CATAATAATAAAATAGTAGCAA
1 AATAAGAAGAAAATAGTAGCAA
*
89036391 AATAGGAAGAAAA
1 AATAAGAAGAAAA
89036404 CAATAAGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.63, C:0.07, G:0.12, T:0.18
Consensus pattern (22 bp):
AATAAGAAGAAAATAGTAGCAA
Found at i:89039291 original size:13 final size:13
Alignment explanation
Indices: 89039273--89039299 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89039263 CCTTAGATGG
89039273 TAATTAGACCATT
1 TAATTAGACCATT
89039286 TAATTAGACCATT
1 TAATTAGACCATT
89039299 T
1 T
89039300 TACTAAGTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (13 bp):
TAATTAGACCATT
Found at i:89040273 original size:42 final size:42
Alignment explanation
Indices: 89040225--89040322 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
89040215 ACCGAGGCTA
* * *
89040225 TGTGTAAGACCATATCTGGGATATGGCAT-TATTATGAGATAT
1 TGTGTAAGACCATATCTAGGATATGGCATCGA-TATGACATAT
*
89040267 TGTGTAAGACCATATCTAGGATATGGCATCGATATGACATTT
1 TGTGTAAGACCATATCTAGGATATGGCATCGATATGACATAT
*
89040309 TATGTAAGACCATA
1 TGTGTAAGACCATA
89040323 GTTGGGCTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
42 49 0.98
43 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (42 bp):
TGTGTAAGACCATATCTAGGATATGGCATCGATATGACATAT
Found at i:89046880 original size:42 final size:41
Alignment explanation
Indices: 89046817--89046971 Score: 148
Period size: 42 Copynumber: 3.7 Consensus size: 41
89046807 CCGAGGCTAT
*
89046817 GTGTAAGACCATATCTAGGATATGGCATCATTATGAGATTTT
1 GTGTAAGACCATATCTAGGATATGGCATCA-TATGAGATTTC
* * * *
89046859 GTGTAAGACCATATTTGGGATATGACATCGATATGACATTTC
1 GTGTAAGACCATATCTAGGATATGGCATC-ATATGAGATTTC
* * * * * *
89046901 GTGTAACACTATAGCTAGGCTATTGGCAGCAGTATGAGATTAC
1 GTGTAAGACCATATCTAGGATA-TGGCATCA-TATGAGATTTC
* * *
89046944 ATGTAAGACCATATCTGGGATTTGGCAT
1 GTGTAAGACCATATCTAGGATATGGCAT
89046972 TAGTGTGGTA
Statistics
Matches: 87, Mismatches: 23, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
42 57 0.66
43 30 0.34
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGGCATCATATGAGATTTC
Found at i:89049297 original size:44 final size:41
Alignment explanation
Indices: 89049237--89049487 Score: 180
Period size: 44 Copynumber: 5.9 Consensus size: 41
89049227 TTTCGATATA
* * *
89049237 TGATTTTGTGTAAGACCACGTCTAGGACGTTGGCATCGATT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
* * **
89049278 TGAGATTTGCGTGTAAGACCATGCCTGGGACAACGGCATCGTATT
1 T--GATTT-CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATT
* * ** * *
89049323 TGATTTTGTGTACGATAATGTTTGGGACATTGGCATCGATT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
* * * *
89049364 TGAGATTCACGTGTAAGACTATGTCTGGGACATCGGCATCGTATT
1 T--GATT-TCGTGTAAGACCACGTCTGGGACATTGGCATCG-ATT
* * * *
89049409 TGATTTCATGTAAGACC-CTGTCTAGGACAGTGGCATCAATATT
1 TGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATC--GATT
* * *
89049452 TGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
89049488 TATATGAGCT
Statistics
Matches: 164, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
41 5 0.03
42 48 0.29
43 51 0.31
44 52 0.32
45 8 0.05
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
Found at i:89049437 original size:86 final size:85
Alignment explanation
Indices: 89049245--89049479 Score: 258
Period size: 86 Copynumber: 2.7 Consensus size: 85
89049235 TATGATTTTG
* * *
89049245 TGTAAGACCAC-GTCTAGGACGTTGGCATCGATTTGAGATTTGCGTGTAAGACCATGCCTGGGAC
1 TGTAAGACC-CTGTCTAGGACATTGGCATCGATTTGAGA-TTACGTGTAAGACCATGTCTGGGAC
**
89049309 AACGGCATCGTATTTGATTTTG
64 AACGGCATCGTATTTGATTTCA
* *** * * *
89049331 TGTACGATAATGTTTGGGACATTGGCATCGATTTGAGATTCACGTGTAAGACTATGTCTGGGACA
1 TGTAAGACCCTGTCTAGGACATTGGCATCGATTTGAGATT-ACGTGTAAGACCATGTCTGGGACA
*
89049396 TCGGCATCGTATTTGATTTCA
65 ACGGCATCGTATTTGATTTCA
* * * * *
89049417 TGTAAGACCCTGTCTAGGACAGTGGCATCAATATT-TGATTACATGTAAGACCACGTCTGGGAC
1 TGTAAGACCCTGTCTAGGACATTGGCATCGAT-TTGAGATTACGTGTAAGACCATGTCTGGGAC
89049480 GTTGGCATTA
Statistics
Matches: 121, Mismatches: 25, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
85 22 0.18
86 97 0.80
87 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (85 bp):
TGTAAGACCCTGTCTAGGACATTGGCATCGATTTGAGATTACGTGTAAGACCATGTCTGGGACAA
CGGCATCGTATTTGATTTCA
Found at i:89049486 original size:43 final size:42
Alignment explanation
Indices: 89049245--89049492 Score: 126
Period size: 42 Copynumber: 5.8 Consensus size: 42
89049235 TATGATTTTG
* * * *
89049245 TGTAAGACCACGTCTAGGACGTTGGCATCGAT-TTGAGATTTGCG
1 TGTAAGACCACGTCTGGGACGTTGGCATC-ATATT-TGA-TTACA
* * *** * ***
89049289 TGTAAGACCATGCCTGGGACAACGGCATCGTATTTGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
* ** * * * * *
89049331 TGTACGATAATGTTTGGGACATTGGCATCGAT-TTGAGATTCACG
1 TGTAAGACCACGTCTGGGACGTTGGCATC-ATATT-TGATT-ACA
* * * * * *
89049375 TGTAAGACTATGTCTGGGACATCGGCATCGTATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
*
89049417 TGTAAGACC-CTGTCTAGGACAG-TGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATC-ATATTTGATTACA
*
89049460 TGTAAGACCACGTCTGGGACGTTGGCATTATAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCATAT
89049493 GAGCTTTCCG
Statistics
Matches: 155, Mismatches: 39, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
42 55 0.35
43 47 0.30
44 53 0.34
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
Found at i:89053595 original size:28 final size:29
Alignment explanation
Indices: 89053528--89053596 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
89053518 AATGAAAAGG
*
89053528 ATGCCTTTATGGCAAACCTCTGAAACGAA
1 ATGCCTTTGTGGCAAACCTCTGAAACGAA
* * *
89053557 ATGCCTCTGTGGCAAA-CTCTAGAGAGGAA
1 ATGCCTTTGTGGCAAACCTCT-GAAACGAA
89053586 A-GCCTTTGTGG
1 ATGCCTTTGTGG
89053597 TGATCTCTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 13 0.38
29 21 0.62
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (29 bp):
ATGCCTTTGTGGCAAACCTCTGAAACGAA
Found at i:89066101 original size:28 final size:28
Alignment explanation
Indices: 89066046--89066114 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
89066036 TATATAGTTT
* * *
89066046 GCACACTTAGTGCTCGATATTTAAACTC
1 GCACACTTAGTGCTCAATAATCAAACTC
*
89066074 GCACACTTAGTGCTCAATAATCACACTC
1 GCACACTTAGTGCTCAATAATCAAACTC
* *
89066102 ACAAACTTAGTGC
1 GCACACTTAGTGC
89066115 AAGATTCACA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTCAATAATCAAACTC
Found at i:89067274 original size:24 final size:24
Alignment explanation
Indices: 89067224--89067293 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
89067214 ACCGATATAT
**
89067224 CAGCTCGTAAGAGCTTACTAATCC
1 CAGCTCGTAAGAGCTTACTGTTCC
* * *
89067248 CAGCTTGTCAGAGCTTACTGTTTC
1 CAGCTCGTAAGAGCTTACTGTTCC
* *
89067272 CAGCTCATTAGAGCTTACTGTT
1 CAGCTCGTAAGAGCTTACTGTT
89067294 ATCAGCTCAG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACTGTTCC
Found at i:89067299 original size:24 final size:24
Alignment explanation
Indices: 89067257--89067302 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
89067247 CCAGCTTGTC
89067257 AGAGCTTACTGTTTCCAGCTCATT
1 AGAGCTTACTGTTTCCAGCTCATT
89067281 AGAGCTTACTGTTAT-CAGCTCA
1 AGAGCTTACTGTT-TCCAGCTCA
89067303 GGAGGAGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (24 bp):
AGAGCTTACTGTTTCCAGCTCATT
Found at i:89078104 original size:16 final size:16
Alignment explanation
Indices: 89078083--89078141 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
89078073 GTAGATCGGC
* *
89078083 AAAAGTCAAAATGCCG
1 AAAAGTCGAAATGCTG
89078099 AAAAGTCGAAATGCTG
1 AAAAGTCGAAATGCTG
*
89078115 AAAAGCCGAAATGCTG
1 AAAAGTCGAAATGCTG
*
89078131 AAAAGCCGAAA
1 AAAAGTCGAAA
89078142 GTTTGACTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.49, C:0.17, G:0.22, T:0.12
Consensus pattern (16 bp):
AAAAGTCGAAATGCTG
Found at i:89078141 original size:8 final size:8
Alignment explanation
Indices: 89078090--89078141 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
89078080 GGCAAAAGTC
89078090 AAAATGCCG
1 AAAA-GCCG
*
89078099 AAAAGTCG
1 AAAAGCCG
* *
89078107 AAATGCTG
1 AAAAGCCG
89078115 AAAAGCCG
1 AAAAGCCG
* *
89078123 AAATGCTG
1 AAAAGCCG
89078131 AAAAGCCG
1 AAAAGCCG
89078139 AAA
1 AAA
89078142 GTTTGACTAT
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
8 29 0.88
9 4 0.12
ACGTcount: A:0.48, C:0.17, G:0.23, T:0.12
Consensus pattern (8 bp):
AAAAGCCG
Found at i:89078387 original size:29 final size:29
Alignment explanation
Indices: 89078354--89078442 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 29
89078344 TGATCATGAC
* *
89078354 TATAAATGTGAATTGGGTCTGATGGGCCA
1 TATAAATGTGAATTGGGCCTAATGGGCCA
*
89078383 TATAAATGTGATTTGGGCCTAATGGGCC-
1 TATAAATGTGAATTGGGCCTAATGGGCCA
*
89078411 TATAAATGTG-ATTGGGCCTAATGGACCA
1 TATAAATGTGAATTGGGCCTAATGGGCCA
89078439 TATA
1 TATA
89078443 CAGGTATGTG
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
27 15 0.28
28 14 0.26
29 25 0.46
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (29 bp):
TATAAATGTGAATTGGGCCTAATGGGCCA
Found at i:89078752 original size:26 final size:27
Alignment explanation
Indices: 89078722--89078775 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
89078712 AACCGTAATA
* * *
89078722 AAAGG-AAAAATTACTGAAATGCCCCT
1 AAAGGCAAAAATGACCGAAATACCCCT
*
89078748 AAAGGCGAAAATGACCGAAATACCCCT
1 AAAGGCAAAAATGACCGAAATACCCCT
89078775 A
1 A
89078776 GGTGTTGAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.46, C:0.22, G:0.17, T:0.15
Consensus pattern (27 bp):
AAAGGCAAAAATGACCGAAATACCCCT
Found at i:89090252 original size:47 final size:47
Alignment explanation
Indices: 89090141--89090690 Score: 996
Period size: 47 Copynumber: 11.7 Consensus size: 47
89090131 GCCCTTCGGG
*
89090141 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
89090191 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
89090238 ACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
89090283 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
89090330 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
89090377 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
89090424 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
89090471 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
89090518 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
89090565 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCCCATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
89090612 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCCCATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
89090659 ACTTTCACATTCATCACTTCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
89090691 ATACTATCAT
Statistics
Matches: 491, Mismatches: 7, Indels: 7
0.97 0.01 0.01
Matches are distributed among these distances:
45 44 0.09
47 409 0.83
49 34 0.07
50 4 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:89098159 original size:17 final size:16
Alignment explanation
Indices: 89098137--89098171 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
89098127 ATTTTATATT
*
89098137 TATATTTAATTATTTAA
1 TATATTAAATTA-TTAA
89098154 TATATTAAATTATTAA
1 TATATTAAATTATTAA
89098170 TA
1 TA
89098172 ATTCAATACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATTAAATTATTAA
Found at i:89098524 original size:11 final size:11
Alignment explanation
Indices: 89098508--89098564 Score: 78
Period size: 11 Copynumber: 5.2 Consensus size: 11
89098498 TTTCCCTCTT
*
89098508 TCTCAATTCAC
1 TCTCAATTCTC
*
89098519 TCTCAACTCTC
1 TCTCAATTCTC
89098530 TCTCAATTCTC
1 TCTCAATTCTC
*
89098541 TCTTAATTCTC
1 TCTCAATTCTC
*
89098552 ACTCAATTCTC
1 TCTCAATTCTC
89098563 TC
1 TC
89098565 AGTTCACTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 39 1.00
ACGTcount: A:0.21, C:0.37, G:0.00, T:0.42
Consensus pattern (11 bp):
TCTCAATTCTC
Found at i:89098709 original size:164 final size:164
Alignment explanation
Indices: 89098529--89098838 Score: 514
Period size: 164 Copynumber: 1.9 Consensus size: 164
89098519 TCTCAACTCT
* **
89098529 CTCTCAATTCTCTCTTAATTCTCACTCAATTCTCTCAGTTCACTCTTATTTTTTATTAAACATT-
1 CTCTCAATTCTCTCTTAATTCTCACTCAATTCTCTCAATTCACTCACATTTTTTATTAAA-ATTG
**
89098593 TCTTAAGGTTTTTTTAATTAATTTTGTATTATGATTTTTATTCATATTTATTGAAATTCTTAATG
65 TCTTAAGGTTTTTTTAATTAATTTTGTATTACAATTTTTATTCATATTTATTGAAATTCTTAATG
89098658 GAAAATTCTCTTATTCGCTTCTCTCTCTCAATTTA
130 GAAAATTCTCTTATTCGCTTCTCTCTCTCAATTTA
* *
89098693 CTCTCAATTTTCTCTTAATTCTCACTTAATTCTCTCAATTCACTCACATTTTTTATTAAAATTGT
1 CTCTCAATTCTCTCTTAATTCTCACTCAATTCTCTCAATTCACTCACATTTTTTATTAAAATTGT
* * *
89098758 TTTAAGTTTTTTTTAATTAATTTTGTATTACAATTTTTATTCGTATTTATTGAAATTCTTAATGG
66 CTTAAGGTTTTTTTAATTAATTTTGTATTACAATTTTTATTCATATTTATTGAAATTCTTAATGG
89098823 AAAATTCTCTTATTCG
131 AAAATTCTCTTATTCG
89098839 TTTATATGGA
Statistics
Matches: 135, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
163 3 0.02
164 132 0.98
ACGTcount: A:0.26, C:0.16, G:0.05, T:0.52
Consensus pattern (164 bp):
CTCTCAATTCTCTCTTAATTCTCACTCAATTCTCTCAATTCACTCACATTTTTTATTAAAATTGT
CTTAAGGTTTTTTTAATTAATTTTGTATTACAATTTTTATTCATATTTATTGAAATTCTTAATGG
AAAATTCTCTTATTCGCTTCTCTCTCTCAATTTA
Found at i:89116011 original size:19 final size:18
Alignment explanation
Indices: 89115962--89116019 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 18
89115952 TTTACACAAG
89115962 TAATTTTAATATTTTCAAAA
1 TAATTTTAA-A-TTTCAAAA
89115982 TAATTTTAAATTTCAAAA
1 TAATTTTAAATTTCAAAA
89116000 T-ATTTATAAAATTTCAAAA
1 TAATTT-T-AAATTTCAAAA
89116019 T
1 T
89116020 TTATATTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.11
18 10 0.28
19 13 0.36
20 9 0.25
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TAATTTTAAATTTCAAAA
Found at i:89116062 original size:21 final size:22
Alignment explanation
Indices: 89116030--89116076 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
89116020 TTATATTTTT
89116030 AAAAAATATAAA-AAT-TATAA
1 AAAAAATATAAAGAATATATAA
*
89116050 AAAAAATCCTAAAGAATATATAA
1 AAAAAAT-ATAAAGAATATATAA
89116073 AAAA
1 AAAA
89116077 GTTAAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 4 0.17
22 3 0.13
23 9 0.39
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAAAATATAAAGAATATATAA
Found at i:89116115 original size:12 final size:11
Alignment explanation
Indices: 89116087--89116121 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
89116077 GTTAAAAATT
*
89116087 AAAACCGTAAA
1 AAAACCTTAAA
89116098 AAAACCTTAAA
1 AAAACCTTAAA
89116109 CAAAACCTTAAA
1 -AAAACCTTAAA
89116121 A
1 A
89116122 CTCTAAACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.63, C:0.20, G:0.03, T:0.14
Consensus pattern (11 bp):
AAAACCTTAAA
Found at i:89119749 original size:13 final size:13
Alignment explanation
Indices: 89119731--89119790 Score: 70
Period size: 13 Copynumber: 4.7 Consensus size: 13
89119721 TTTTCATTGT
89119731 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
89119744 TTTTGAAAAGTG-
1 TTTTGAAAAGTGC
* *
89119756 TTGTGGAAAAATGC
1 TT-TTGAAAAGTGC
*
89119770 TTTTGAGAAGTGC
1 TTTTGAAAAGTGC
89119783 -TTTGAAAA
1 TTTTGAAAA
89119791 AATTTAAGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
12 9 0.23
13 28 0.72
14 2 0.05
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:89123349 original size:46 final size:46
Alignment explanation
Indices: 89123264--89123432 Score: 218
Period size: 46 Copynumber: 3.7 Consensus size: 46
89123254 TGCCATAATG
* * * *
89123264 TCTTTCAACTATGGTC-TACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCACGTTGCCATGGTA
* ***
89123309 TCTTTCAACCATAGTCTTGTTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
* *
89123355 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
89123401 TC-TTCAACCATGGTCTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA
89123433 GAGAGCATAC
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
45 48 0.44
46 62 0.56
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
Found at i:89123409 original size:91 final size:91
Alignment explanation
Indices: 89123264--89123432 Score: 225
Period size: 91 Copynumber: 1.9 Consensus size: 91
89123254 TGCCATAATG
* * * * * **
89123264 TCTTTCAACTATGGTCTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATAGTCTTGT
1 TCTTTCAACCATGGTCTACACATTTTCTATCAGGCTGCCATGGTATCTTTCAACCATAGTCTTAC
*
89123329 TCATTTCATATCACGTTGCCATGGTA
66 ACATTTCATATCACGTTGCCATGGTA
*
89123355 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGCTGCCATGGTATC-TTCAACCATGGTCTT
1 TCTTTCAACCATGGTC-TACACATTTTC-TATCAGGCTGCCATGGTATCTTTCAACCATAGTCTT
89123418 ACACATTTCATATCA
64 ACACATTTCATATCA
89123433 GAGAGCATAC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
91 45 0.67
92 22 0.33
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (91 bp):
TCTTTCAACCATGGTCTACACATTTTCTATCAGGCTGCCATGGTATCTTTCAACCATAGTCTTAC
ACATTTCATATCACGTTGCCATGGTA
Found at i:89136885 original size:39 final size:40
Alignment explanation
Indices: 89136840--89136994 Score: 127
Period size: 39 Copynumber: 4.0 Consensus size: 40
89136830 ATAGAAATAC
*
89136840 GGTGATTATTCGAGCTACATGCTTAGCAGGCTCTGTG-CA
1 GGTGATTATTCGAGCTACATGCCTAGCAGGCTCTGTGCCA
* ** *
89136879 GGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCCA
1 GGTGATTATTCGAGCTACATGCCTAGCAGGCTCTGTGCCA
* * * ** ** *
89136919 -CTGATTATTCGGGCAATGTGCCTAGCAGATTATGTGCCA
1 GGTGATTATTCGAGCTACATGCCTAGCAGGCTCTGTGCCA
* *** *
89136958 -GTGATTATTCGGGCTTTGTGCCTAGCAGGCTGTGTGC
1 GGTGATTATTCGAGCTACATGCCTAGCAGGCTCTGTGC
89136995 TGATGTATTG
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 97 0.98
40 2 0.02
ACGTcount: A:0.17, C:0.20, G:0.31, T:0.32
Consensus pattern (40 bp):
GGTGATTATTCGAGCTACATGCCTAGCAGGCTCTGTGCCA
Found at i:89139800 original size:21 final size:21
Alignment explanation
Indices: 89139757--89139800 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
89139747 TTTAATTTTC
89139757 TTTATAAAAATATGATATCATT
1 TTTATAAAAATA-GATATCATT
*
89139779 TTTATAAGAAATA-ATATTATT
1 TTTATAA-AAATAGATATCATT
89139800 T
1 T
89139801 GATTTTTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 7 0.35
23 5 0.25
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (21 bp):
TTTATAAAAATAGATATCATT
Found at i:89146004 original size:23 final size:23
Alignment explanation
Indices: 89145961--89146005 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
89145951 ATATTTTTAT
* *
89145961 TTTTACTAAAATTATGTTTATTA
1 TTTTACTAAAATAATGATTATTA
89145984 TTTTA-TAAAATAATTGATTATT
1 TTTTACTAAAATAA-TGATTATT
89146006 TGGTAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTACTAAAATAATGATTATTA
Found at i:89146235 original size:21 final size:21
Alignment explanation
Indices: 89146209--89146277 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
89146199 TTGTTGGAAA
*
89146209 ATAATTATTGAGTGAAGAATG
1 ATAATTATTGAGTGATGAATG
* * * **
89146230 ATAATTGAAT-ATTGTTGAAAA
1 ATAATT-ATTGAGTGATGAATG
89146251 ATAATTATTGAGTGATGAATG
1 ATAATTATTGAGTGATGAATG
89146272 ATAATT
1 ATAATT
89146278 GTATCTCTTG
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
20 2 0.06
21 31 0.89
22 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (21 bp):
ATAATTATTGAGTGATGAATG
Found at i:89146256 original size:42 final size:42
Alignment explanation
Indices: 89146197--89146278 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
89146187 GTTTTTTTTT
*
89146197 TATTGTTGGAAAATAATTATTGAGTGAAGAATGATAATTGAA
1 TATTGTTGAAAAATAATTATTGAGTGAAGAATGATAATTGAA
*
89146239 TATTGTTGAAAAATAATTATTGAGTGATGAATGATAATTG
1 TATTGTTGAAAAATAATTATTGAGTGAAGAATGATAATTG
89146279 TATCTCTTGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (42 bp):
TATTGTTGAAAAATAATTATTGAGTGAAGAATGATAATTGAA
Found at i:89148130 original size:16 final size:15
Alignment explanation
Indices: 89148104--89148138 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
89148094 TGATGTGAAT
89148104 AATATAAAATATTAA
1 AATATAAAATATTAA
*
89148119 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
89148135 AATA
1 AATA
89148139 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:89148540 original size:11 final size:11
Alignment explanation
Indices: 89148524--89148553 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
89148514 TAACATTAAG
89148524 AATATATATAT
1 AATATATATAT
*
89148535 AATATAAATAT
1 AATATATATAT
89148546 AATATATA
1 AATATATA
89148554 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:89149007 original size:13 final size:13
Alignment explanation
Indices: 89148961--89149008 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
89148951 CCAAATGTAA
89148961 TTTTTT-TTATAT
1 TTTTTTATTATAT
*
89148973 TTGTTTTGTATATAT
1 TT-TTTTAT-TATAT
*
89148988 ATTTTTATTATAT
1 TTTTTTATTATAT
89149001 TTTTTTAT
1 TTTTTTAT
89149009 GATGTATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 2 0.07
13 16 0.53
14 6 0.20
15 6 0.20
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (13 bp):
TTTTTTATTATAT
Found at i:89149016 original size:28 final size:28
Alignment explanation
Indices: 89148955--89149017 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
89148945 CGGCCACCAA
*
89148955 ATGTA-ATTTTTTTTATATTTGTTTTGT
1 ATGTATATTTTTATTATATTTGTTTTGT
* *
89148982 ATATATATTTTTATTATATTT-TTTTAT
1 ATGTATATTTTTATTATATTTGTTTTGT
89149009 GATGTATAT
1 -ATGTATAT
89149018 ATAGATTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 9 0.30
28 21 0.70
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (28 bp):
ATGTATATTTTTATTATATTTGTTTTGT
Found at i:89149054 original size:6 final size:6
Alignment explanation
Indices: 89149045--89149078 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
89149035 AAAAAAGGAA
89149045 AAAAAT AAAAAAT AAAAAAT AAAAAT AAAAAT AA
1 AAAAAT -AAAAAT -AAAAAT AAAAAT AAAAAT AA
89149079 GAGTAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 14 0.52
7 13 0.48
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:89149054 original size:7 final size:7
Alignment explanation
Indices: 89149044--89149075 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
89149034 GAAAAAAGGA
89149044 AAAAAAT
1 AAAAAAT
89149051 AAAAAAT
1 AAAAAAT
89149058 AAAAAAT
1 AAAAAAT
89149065 -AAAAAT
1 AAAAAAT
89149071 AAAAA
1 AAAAA
89149076 TAAGAGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:89149061 original size:14 final size:13
Alignment explanation
Indices: 89149044--89149093 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
89149034 GAAAAAAGGA
89149044 AAAAAATAAAAAAT
1 AAAAAAT-AAAAAT
89149058 AAAAAATAAAAAT
1 AAAAAATAAAAAT
* *
89149071 -AAAAATAAGAGT
1 AAAAAATAAAAAT
89149083 AAAATAATAAA
1 AAAA-AATAAA
89149094 GAAGATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 10 0.32
13 9 0.29
14 12 0.39
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:89149088 original size:17 final size:17
Alignment explanation
Indices: 89149049--89149104 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
89149039 AAGGAAAAAA
89149049 ATAAAA-AATAAA-AA-
1 ATAAAATAATAAAGAAG
*
89149063 ATAAAAATAA-AAATAAG
1 AT-AAAATAATAAAGAAG
89149080 AGTAAAATAATAAAGAAG
1 A-TAAAATAATAAAGAAG
89149098 ATAAAAT
1 ATAAAAT
89149105 CACCTTTAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
14 2 0.06
15 7 0.20
16 4 0.11
17 14 0.40
18 8 0.23
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (17 bp):
ATAAAATAATAAAGAAG
Found at i:89149346 original size:27 final size:26
Alignment explanation
Indices: 89149306--89149370 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 26
89149296 AGGTGGCTAG
89149306 GGTTTTTTGGTTTTTTTT-GGGGGGTTA
1 GGTTTTTT--TTTTTTTTGGGGGGGTTA
89149333 GGTTTTTCTTTTTTTTTGGGGGGGTTA
1 GGTTTTT-TTTTTTTTTGGGGGGGTTA
89149360 GGTTTTTTTTT
1 GGTTTTTTTTT
89149371 GGGGGACTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
26 12 0.33
27 23 0.64
28 1 0.03
ACGTcount: A:0.03, C:0.02, G:0.32, T:0.63
Consensus pattern (26 bp):
GGTTTTTTTTTTTTTTGGGGGGGTTA
Found at i:89152598 original size:13 final size:13
Alignment explanation
Indices: 89152580--89152613 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
89152570 AACATTTAGG
89152580 GTCACACGGCCAA
1 GTCACACGGCCAA
89152593 GTCACACGGCCAA
1 GTCACACGGCCAA
89152606 GTCACACG
1 GTCACACG
89152614 CCCATGTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.38, G:0.24, T:0.09
Consensus pattern (13 bp):
GTCACACGGCCAA
Found at i:89152911 original size:25 final size:25
Alignment explanation
Indices: 89152882--89152932 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
89152872 ACCTTACCAC
89152882 TTATACTTTTATACCATAATTATCT
1 TTATACTTTTATACCATAATTATCT
89152907 TTATACTTTTATACCATAATTATCT
1 TTATACTTTTATACCATAATTATCT
89152932 T
1 T
89152933 CATGTCCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (25 bp):
TTATACTTTTATACCATAATTATCT
Found at i:89153073 original size:30 final size:30
Alignment explanation
Indices: 89153039--89153103 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
89153029 CTCGACTAAG
89153039 ACATTCTACACCAATTCCATATTCAGTTTA
1 ACATTCTACACCAATTCCATATTCAGTTTA
89153069 ACATTCTACACCAATTCCATATTCAGTTTA
1 ACATTCTACACCAATTCCATATTCAGTTTA
89153099 ACATT
1 ACATT
89153104 ATTACAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (30 bp):
ACATTCTACACCAATTCCATATTCAGTTTA
Found at i:89154529 original size:50 final size:50
Alignment explanation
Indices: 89154464--89154897 Score: 429
Period size: 50 Copynumber: 8.6 Consensus size: 50
89154454 CTGGTATGCA
** **
89154464 TAGTAGCCTGCACTTAGCCCTACACATGCAACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * *
89154514 TAGTAGCCTGTACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * ** * * * * * *
89154564 TATTAGCCTGGACTTAGTACTACACACATGATCGAAGCTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTGGTACACG
*
89154615 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * *
89154665 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * * * ** *
89154715 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTGGTACACG
* * * * *
89154766 TAGTAGCTTGCACTTAGTACTACACATGCGACCAAACAATTTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * *** *
89154816 TAGTAGCCTGCATTTAGTACTACACACGTGACCTAA-AACCGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA---TCTGGTACACG
* *
89154868 TAGTAGCCTACACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
89154898 TTCTCACAAT
Statistics
Matches: 313, Mismatches: 66, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
49 2 0.01
50 201 0.64
51 79 0.25
52 31 0.10
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
Found at i:89154636 original size:101 final size:100
Alignment explanation
Indices: 89154462--89154893 Score: 361
Period size: 101 Copynumber: 4.3 Consensus size: 100
89154452 CTCTGGTATG
** * * *
89154462 CATAGTAGCCTGCACTTAGCCCT--ACACATGCAACCTAACAATCTGG-TACACGTAGTAGCCTG
1 CATAGTAGCCTGCACTTAGTACTACACACATG--ACCGAACCATC-GGATACACATAGTAGCCTG
* *
89154524 TACTTAGTACTACACATGTGACCTAACCATCTGATACA
63 CACTTAGTACTACACATGTGACCTAACAATCTGATACA
* * * * * * *
89154562 CGTATTAGCCTGGACTTAGTACTACACACATGATCGAAGCTATCGGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCGAA-CCATCGGATACACATAGTAGCCTGCA
*
89154627 CTTAGTACTACACATGTGACCTAACAATCTGGTACA
65 CTTAGTACTACACATGTGACCTAACAATCTGATACA
* * * * *
89154663 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCTTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCGAACCATCGGATACACATAGTAGCCTGCAC
* * * * * * **
89154728 TTAGTACTACACACGTGATCGAAGCTATCGGGTATG
66 TTAGTACTACACATGTGACCTAA-CAATCTGATACA
* *** * * * **
89154764 CATAGTAGCTTGCACTTAGTACTACACATGCGACCAAACAATTTGG-TACATGTAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCGAACCA-TCGGATACACATAGTAGCCTGCA
* * * *
89154828 TTTAGTACTACACACGTGACCTAA-AACCGTCTTAAACA
65 CTTAGTACTACACATGTGACCTAACAA---TCTGATACA
* *
89154866 CATAGTAGCCTACACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
89154894 TGTGTTCTCA
Statistics
Matches: 269, Mismatches: 54, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
99 1 0.00
100 65 0.24
101 166 0.62
102 37 0.14
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACATGACCGAACCATCGGATACACATAGTAGCCTGCAC
TTAGTACTACACATGTGACCTAACAATCTGATACA
Found at i:89154730 original size:151 final size:151
Alignment explanation
Indices: 89154445--89154893 Score: 655
Period size: 151 Copynumber: 3.0 Consensus size: 151
89154435 CCCTTGTAAC
* * ** *
89154445 CGAAGCTCTCTGGTATGCATAGTAGCCTGCACTTAGCCCTACACATGCAACCTAACAATCTGGTA
1 CGAAGCTATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* * * *
89154510 CACGTAGTAGCCTGTACTTAGTACTACACATGTGACCTAACCATCTGATACACGTATTAGCCTGG
66 CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGC
89154575 ACTTAGTACTACACACATGAT
131 ACTTAGTACTACACACATGAT
* *
89154596 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTA
1 CGAAGCTATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* *
89154661 CACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCTTGC
66 CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGC
*
89154726 ACTTAGTACTACACACGTGAT
131 ACTTAGTACTACACACATGAT
* * *
89154747 CGAAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAAACAATTTGGTA
1 CGAAGCTATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* * * * * *
89154812 CATGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAAAACCGTCTTAAACACATAGTAGCCT
66 CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACACGTAGTAGCCT
* *
89154877 ACACATAGTACTACACA
129 GCACTTAGTACTACACA
89154894 TGTGTTCTCA
Statistics
Matches: 267, Mismatches: 29, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
151 232 0.87
153 35 0.13
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
CGAAGCTATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGC
ACTTAGTACTACACACATGAT
Found at i:89160707 original size:40 final size:40
Alignment explanation
Indices: 89160486--89160703 Score: 359
Period size: 40 Copynumber: 5.5 Consensus size: 40
89160476 AAACCAAGTA
* *
89160486 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
89160525 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
89160565 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
89160605 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
89160645 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
89160685 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
89160704 TTATCATCCG
Statistics
Matches: 169, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.08
40 155 0.92
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:89166913 original size:42 final size:42
Alignment explanation
Indices: 89166854--89166934 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
89166844 CATGTAGGGG
89166854 ATTGTTGAAAAATAATTATTGAGTGAAGAATGATAATTGAAT
1 ATTGTTGAAAAATAATTATTGAGTGAAGAATGATAATTGAAT
* *
89166896 ATTGTTGGAAAATAATTATTGAGTGATGAATGATAATTG
1 ATTGTTGAAAAATAATTATTGAGTGAAGAATGATAATTG
89166935 TATCTCTTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (42 bp):
ATTGTTGAAAAATAATTATTGAGTGAAGAATGATAATTGAAT
Found at i:89166931 original size:21 final size:21
Alignment explanation
Indices: 89166865--89166933 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
89166855 TTGTTGAAAA
*
89166865 ATAATTATTGAGTGAAGAATG
1 ATAATTATTGAGTGATGAATG
* * * *
89166886 ATAATTGAAT-ATTGTTGGAA-A
1 ATAATT-ATTGAGTGAT-GAATG
89166907 ATAATTATTGAGTGATGAATG
1 ATAATTATTGAGTGATGAATG
89166928 ATAATT
1 ATAATT
89166934 GTATCTCTTC
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
20 5 0.14
21 25 0.71
22 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
ATAATTATTGAGTGATGAATG
Found at i:89178233 original size:19 final size:18
Alignment explanation
Indices: 89178209--89178276 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 18
89178199 ATTTATATTT
89178209 TAAAAAATATTAATTACAA
1 TAAAAAATATTAA-TACAA
* *
89178228 TAAAAATTATCAATACAA
1 TAAAAAATATTAATACAA
*
89178246 TAAAAAATTTTAA-ACAAA
1 TAAAAAATATTAATAC-AA
89178264 TAACAAAA-ATTAA
1 TAA-AAAATATTAA
89178277 AATAAAATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
17 2 0.05
18 24 0.59
19 15 0.37
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAAAATATTAATACAA
Found at i:89179388 original size:20 final size:20
Alignment explanation
Indices: 89179357--89179402 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
89179347 TTATAAAATA
* *
89179357 TCTAACAATTTATTAATATT
1 TCTAAGAATTTACTAATATT
*
89179377 TTTAAGAATTTACTAATATT
1 TCTAAGAATTTACTAATATT
89179397 TCTAAG
1 TCTAAG
89179403 GATGTTAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (20 bp):
TCTAAGAATTTACTAATATT
Found at i:89180133 original size:32 final size:32
Alignment explanation
Indices: 89180092--89180152 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
89180082 GGCTATTACT
*
89180092 CCCTTTACTTTGTGAAAATTATGTATTTAGTC
1 CCCTTTACTTTGTGAAAATTATGGATTTAGTC
* *
89180124 CCCTTTACTTTGTGGAAATTGTGGATTTA
1 CCCTTTACTTTGTGAAAATTATGGATTTA
89180153 ATCCTTATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.16, T:0.46
Consensus pattern (32 bp):
CCCTTTACTTTGTGAAAATTATGGATTTAGTC
Done.