Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 27 of 344
Found at i:9324975 original size:14 final size:14
Alignment explanation
Indices: 9324956--9324982 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9324946 TTATTTGACT
9324956 TGTTCTTAATTATG
1 TGTTCTTAATTATG
9324970 TGTTCTTAATTAT
1 TGTTCTTAATTAT
9324983 TGTCTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:9329120 original size:23 final size:23
Alignment explanation
Indices: 9329071--9329123 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
9329061 TACTAAAGTC
***
9329071 TAATAAAAATTAAAAAATAGTTT
1 TAATAAAAATTAAAAAATAGAAA
9329094 TAATAAAAATTAAAAACATA-AAA
1 TAATAAAAATTAAAAA-ATAGAAA
9329117 TAATAAA
1 TAATAAA
9329124 TAAATCTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (23 bp):
TAATAAAAATTAAAAAATAGAAA
Found at i:9351926 original size:58 final size:58
Alignment explanation
Indices: 9351859--9351971 Score: 208
Period size: 58 Copynumber: 1.9 Consensus size: 58
9351849 TTAAGTTAAC
*
9351859 ATTGTTGTAAACAAGAACAAAGAACACATAGCAAACATTTTTATATTAAACTAAAGAA
1 ATTGTTGTAAACAAGAACAAAGAACACATAGCAAACATTTTTAGATTAAACTAAAGAA
*
9351917 ATTGTTGTAAGCAAGAACAAAGAACACATAGCAAACATTTTTAGATTAAACTAAA
1 ATTGTTGTAAACAAGAACAAAGAACACATAGCAAACATTTTTAGATTAAACTAAA
9351972 TAAAAGAAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (58 bp):
ATTGTTGTAAACAAGAACAAAGAACACATAGCAAACATTTTTAGATTAAACTAAAGAA
Found at i:9366162 original size:64 final size:64
Alignment explanation
Indices: 9366082--9366265 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
9366072 AGACATTATG
* *
9366082 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
9366146 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
9366210 TAA
62 TAA
* * * *
9366213 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
9366266 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 23 0.23
65 4 0.04
66 18 0.18
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:9378989 original size:19 final size:19
Alignment explanation
Indices: 9378965--9379002 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
9378955 AACATAACAT
*
9378965 CAATAGGCATTCAAACCAA
1 CAATAGGAATTCAAACCAA
9378984 CAATAGGAATTCAAACCAA
1 CAATAGGAATTCAAACCAA
9379003 TCTCAACCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.24, G:0.11, T:0.16
Consensus pattern (19 bp):
CAATAGGAATTCAAACCAA
Found at i:9381974 original size:40 final size:38
Alignment explanation
Indices: 9381910--9382175 Score: 263
Period size: 38 Copynumber: 6.9 Consensus size: 38
9381900 ATTTGATGTG
* *
9381910 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
* * * *
9381950 TATCCGGGCTTAAAAACCCACAGGCTAT-ATGCTAGAATTA
1 TATCCGGG-TT-AAATCCCGCAGGCT-TCGTGCTGGAATTA
*
9381990 TATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
9382028 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* *
9382066 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
9382104 TATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
9382142 TATCTGAGCTTAAAGTCCCGCAGG-TTTGTGCTGG
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGG
9382176 TGACTAGATT
Statistics
Matches: 201, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
37 2 0.01
38 128 0.64
39 18 0.09
40 50 0.25
41 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:9382134 original size:114 final size:117
Alignment explanation
Indices: 9381910--9382176 Score: 339
Period size: 114 Copynumber: 2.3 Consensus size: 117
9381900 ATTTGATGTG
* *
9381910 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGG-AATTATATCCGGGCTTAAAAACCCACAGG
1 TATCCGGG-TTAAAGTCCCGCAGGCT-TGTGCTGGTAATTATATCCGGGCTTAAAAACCCACAGG
* *
9381974 CTATATGCTAGAATTATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATA
64 CTATATGCTAGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA
*
9382028 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAA-TATATCCGGG-TT-AAATCCCACAGGC
1 TATCCGGGTTAAAGTCCCGCAGGCTT-GTGCTGGTAATTATATCCGGGCTTAAAAACCCACAGGC
* * * *
9382089 T-TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
65 TAT-ATGCTAGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA
* * *
9382142 TATCTGAGCTTAAAGTCCCGCAGGTTTGTGCTGGT
1 TATCCG-GGTTAAAGTCCCGCAGGCTTGTGCTGGT
9382177 GACTAGATTC
Statistics
Matches: 132, Mismatches: 12, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
113 1 0.01
114 62 0.47
115 17 0.13
116 37 0.28
117 7 0.05
118 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (117 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTGTGCTGGTAATTATATCCGGGCTTAAAAACCCACAGGCT
ATATGCTAGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA
Found at i:9386681 original size:27 final size:26
Alignment explanation
Indices: 9386651--9386827 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 26
9386641 AAATTGTGCG
*
9386651 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTA
* *
9386678 GCACTAAGTGTGCGAAATGAATATG-A
1 GCACTAAGTGTGCG-ATTGACTATGTA
* **
9386704 TGCACTAAGTGTGCGAATTGACCATGCG
1 -GCACTAAGTGTGCG-ATTGACTATGTA
9386732 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTA
* * *
9386760 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTA
* *
9386787 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTA
*
9386814 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
9386828 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTA
Found at i:9386770 original size:82 final size:81
Alignment explanation
Indices: 9386647--9386806 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
9386637 GATTAAATTG
* * *
9386647 TGCGGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTA
1 TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTA
9386711 AGTGTGCGAATTGACCA
65 AGTGTGCGAATTGACCA
** *
9386728 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TGCGGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTA
*
9386793 AGTGTGCGAGTTGA
65 AGTGTGCGAATTGA
9386807 TTATATAGCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 22 0.31
82 48 0.69
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
GTGTGCGAATTGACCA
Found at i:9386818 original size:82 final size:81
Alignment explanation
Indices: 9386651--9386827 Score: 212
Period size: 82 Copynumber: 2.2 Consensus size: 81
9386641 AAATTGTGCG
* * *
9386651 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
9386716 GCGAATTGACCATGCG
66 GCGAATTGACCATACA
** *
9386732 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
9386796 GTGCGAGTTGATTATATA
64 GTGCGAATTGACCATACA
*
9386814 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
9386828 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACA
Found at i:9400740 original size:26 final size:26
Alignment explanation
Indices: 9400709--9400816 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
9400699 TGAAATGCCC
*
9400709 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
9400735 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
9400761 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
9400787 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9400813 ATCA
1 ATCA
9400817 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:9401988 original size:20 final size:21
Alignment explanation
Indices: 9401949--9401990 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
9401939 TTCCTCAGTG
9401949 TCGAACACGATCATCCACCAC
1 TCGAACACGATCATCCACCAC
9401970 TCGAACAC-ATCGA-CCACCAC
1 TCGAACACGATC-ATCCACCAC
9401990 T
1 T
9401991 TGATGAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.33, C:0.43, G:0.10, T:0.14
Consensus pattern (21 bp):
TCGAACACGATCATCCACCAC
Found at i:9405218 original size:15 final size:15
Alignment explanation
Indices: 9405200--9405229 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9405190 TTAGTTCATA
9405200 TAAGCCCATATCTTT
1 TAAGCCCATATCTTT
9405215 TAAGCCCATATCTTT
1 TAAGCCCATATCTTT
9405230 CATTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (15 bp):
TAAGCCCATATCTTT
Found at i:9411070 original size:25 final size:24
Alignment explanation
Indices: 9411002--9411084 Score: 123
Period size: 24 Copynumber: 3.4 Consensus size: 24
9410992 CTGGAGGCCT
9411002 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
9411026 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGGGGCAA
9411050 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTGGGGCA-A
9411076 AGCCCTTTT
1 AGCCCTTTT
9411085 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.13
24 24 0.44
25 13 0.24
26 10 0.19
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:9411200 original size:20 final size:20
Alignment explanation
Indices: 9411134--9411190 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
9411124 TTATGAATAC
*
9411134 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
9411154 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
9411174 GTCATGTGCATATCATA
1 ATCATGTGCATATCATA
9411191 TCAACCATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:9411279 original size:25 final size:25
Alignment explanation
Indices: 9411236--9411283 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
9411226 ATAAGTAAAC
* **
9411236 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGTAAAACAGTTATTTTTA
9411261 CCTAGGGGTAAAACAGTTATTTT
1 CCTAGGGGTAAAACAGTTATTTT
9411284 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (25 bp):
CCTAGGGGTAAAACAGTTATTTTTA
Found at i:9418426 original size:18 final size:18
Alignment explanation
Indices: 9418400--9418434 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9418390 TTGTAACGTT
*
9418400 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
9418418 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
9418435 CGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:9429037 original size:43 final size:43
Alignment explanation
Indices: 9428887--9429039 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 43
9428877 CGTACAATGG
* * * *
9428887 CAACGTCCCAGATGTGGTCTTACATGCT-ATCACATATCAATGC
1 CAACGTCCCAGACGTGGTCTTACACG-TAATCAAATATCGATGC
*
9428930 C-ACTGTCCCAGACAG-GGTCTTACACG-AATCAAATAT-GATAC
1 CAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAATATCGATGC
** * * * *
9428971 TGATGTCCCAAACATGGTCTTACACGTAATCATATATCGATGC
1 CAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCGATGC
*
9429014 CAACGTCCTAGACGTGGTCTTACACG
1 CAACGTCCCAGACGTGGTCTTACACG
9429040 AGTACACATA
Statistics
Matches: 86, Mismatches: 17, Indels: 14
0.74 0.15 0.12
Matches are distributed among these distances:
41 22 0.26
42 20 0.23
43 43 0.50
44 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
CAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCGATGC
Found at i:9437018 original size:79 final size:79
Alignment explanation
Indices: 9436887--9437033 Score: 192
Period size: 79 Copynumber: 1.9 Consensus size: 79
9436877 TACAATGCCA
* * *
9436887 ATGTCTCAGACATGGTCTTACATGCTATCACATATCAATGCCACTATCCCAGACAG-GGTCTTAC
1 ATGTCCCAGACATGGTCTTACACGCTATCACATATCAATGCAACTATCCCAGA-AGTGGTCTTAC
9436951 ACGAATACGATGCTG
65 ACGAATACGATGCTG
* * *
9436966 ATGTCCCAGACATGGTCTTACACG-TAATCATATATCGATGCTAAC-GTCCCAGAAGTGGTCTTA
1 ATGTCCCAGACATGGTCTTACACGCT-ATCACATATCAATGC-AACTATCCCAGAAGTGGTCTTA
9437029 CACGA
64 CACGA
9437034 GAACACATAT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 3 0.05
79 54 0.92
80 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (79 bp):
ATGTCCCAGACATGGTCTTACACGCTATCACATATCAATGCAACTATCCCAGAAGTGGTCTTACA
CGAATACGATGCTG
Found at i:9437044 original size:43 final size:43
Alignment explanation
Indices: 9436958--9437045 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
9436948 TACACGAATA
* * * *
9436958 CGATGCTGATGTCCCAGACATGGTCTTACACGTAATCATATAT
1 CGATGCTAACGTCCCAGACATGGTCTTACACGTAAACACATAT
9437001 CGATGCTAACGTCCCAGA-AGTGGTCTTACACG-AGAACACATAT
1 CGATGCTAACGTCCCAGACA-TGGTCTTACACGTA-AACACATAT
9437044 CG
1 CG
9437046 GAATCCTATG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
42 2 0.05
43 37 0.95
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
CGATGCTAACGTCCCAGACATGGTCTTACACGTAAACACATAT
Found at i:9437582 original size:28 final size:26
Alignment explanation
Indices: 9437548--9437599 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
9437538 TACATTTCAT
*
9437548 TTATTTTACATTTTAGTCCCTCAATTTA
1 TTATTTTACAATTTA-TCCCT-AATTTA
*
9437576 TTATTTTGCAATTTATCCCTAATT
1 TTATTTTACAATTTATCCCTAATT
9437600 ACTCAAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 5 0.23
28 13 0.59
ACGTcount: A:0.25, C:0.17, G:0.04, T:0.54
Consensus pattern (26 bp):
TTATTTTACAATTTATCCCTAATTTA
Found at i:9437798 original size:19 final size:19
Alignment explanation
Indices: 9437767--9437803 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
9437757 ACTGCAACGA
9437767 TATCAAAAACGAA-AAAAT
1 TATCAAAAACGAACAAAAT
9437785 TATCAAAAACCGAACAAAA
1 TATCAAAAA-CGAACAAAA
9437804 ACTAACCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.65, C:0.16, G:0.05, T:0.14
Consensus pattern (19 bp):
TATCAAAAACGAACAAAAT
Found at i:9443998 original size:22 final size:23
Alignment explanation
Indices: 9443974--9444020 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 23
9443964 CTAAATAAGT
9443974 AGACTCGATAATGGTAAAAAATAGA
1 AGACTCGATAATGGTAAAAAAT--A
9443999 AGACTCGATAATGGTAAAAAAT
1 AGACTCGATAATGGTAAAAAAT
9444021 GGATCCCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.09, G:0.19, T:0.21
Consensus pattern (23 bp):
AGACTCGATAATGGTAAAAAATA
Found at i:9444601 original size:30 final size:29
Alignment explanation
Indices: 9444568--9444683 Score: 90
Period size: 30 Copynumber: 3.8 Consensus size: 29
9444558 AACTAAATCT
* *
9444568 AATAGAAATACTAAGAAAATAAAATAATAT
1 AATAGAAATAATAA-AAAATAAAATAATAA
* *
9444598 AATAGCAATAAGAAAAAATTTAAAATAATAA
1 AATAGAAATAATAAAAAA--TAAAATAATAA
* *
9444629 AATA-AAAAAATAAAAAAATAAAAAAAATAA
1 AATAGAAATAAT-AAAAAAT-AAAATAATAA
* *
9444659 AATAGAATAAAAATAAAAACTAAAA
1 AATAG-A-AATAATAAAAAATAAAA
9444684 AATGGAAAGA
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
29 5 0.07
30 28 0.40
31 24 0.34
32 7 0.10
33 6 0.09
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (29 bp):
AATAGAAATAATAAAAAATAAAATAATAA
Found at i:9444629 original size:8 final size:8
Alignment explanation
Indices: 9444618--9444662 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
9444608 AGAAAAAATT
9444618 TAAAATAA
1 TAAAATAA
9444626 TAAAATAA
1 TAAAATAA
*
9444634 AAAAATAA
1 TAAAATAA
*
9444642 AAAAATAA
1 TAAAATAA
9444650 -AAAA-AA
1 TAAAATAA
9444656 TAAAATA
1 TAAAATA
9444663 GAATAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
6 2 0.06
7 8 0.24
8 24 0.71
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (8 bp):
TAAAATAA
Found at i:9444634 original size:5 final size:5
Alignment explanation
Indices: 9444624--9444676 Score: 54
Period size: 5 Copynumber: 10.4 Consensus size: 5
9444614 AATTTAAAAT
* * *
9444624 AATAA AATAA AAAAA TAAAAA AATAA AA-AA AATAA AATAG AATAAA AATAA
1 AATAA AATAA AATAA -AATAA AATAA AATAA AATAA AATAA AAT-AA AATAA
9444675 AA
1 AA
9444677 ACTAAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 4 0.10
5 28 0.68
6 9 0.22
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (5 bp):
AATAA
Found at i:9444638 original size:16 final size:15
Alignment explanation
Indices: 9444619--9444676 Score: 64
Period size: 16 Copynumber: 3.8 Consensus size: 15
9444609 GAAAAAATTT
*
9444619 AAAATAATAAAATAA
1 AAAAAAATAAAATAA
*
9444634 AAAAATAAAAAAAT-A
1 AAAAA-AATAAAATAA
9444649 AAAAAAATAAAATAGA
1 AAAAAAATAAAATA-A
*
9444665 ATAAAAATAAAA
1 AAAAAAATAAAA
9444677 ACTAAAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 7 0.19
15 10 0.28
16 19 0.53
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.16
Consensus pattern (15 bp):
AAAAAAATAAAATAA
Found at i:9444684 original size:31 final size:30
Alignment explanation
Indices: 9444583--9444685 Score: 86
Period size: 31 Copynumber: 3.4 Consensus size: 30
9444573 AAATACTAAG
* *
9444583 AAAATAAAATAATATAATAGCAATAAGAAA-A
1 AAAATAAAAAAATAAAATAG-AATAA-AAATA
** * *
9444614 AATTTAAAATAATAAAATA-AA-AAAATAAA
1 AAAATAAAAAAATAAAATAGAATAAAA-ATA
9444643 AAAATAAAAAAAATAAAATAGAATAAAAATA
1 AAAAT-AAAAAAATAAAATAGAATAAAAATA
9444674 AAAACTAAAAAA
1 AAAA-TAAAAAA
9444686 TGGAAAGAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 6 0.10
30 13 0.22
31 30 0.51
32 5 0.08
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (30 bp):
AAAATAAAAAAATAAAATAGAATAAAAATA
Found at i:9447773 original size:14 final size:14
Alignment explanation
Indices: 9447735--9447777 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
9447725 ATAGTTTAAT
9447735 AATAAAATAAA-GA
1 AATAAAATAAATGA
*
9447748 AATGAAATAAATGA
1 AATAAAATAAATGA
*
9447762 AATAAAAGAAATGA
1 AATAAAATAAATGA
9447776 AA
1 AA
9447778 CAGAAAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (14 bp):
AATAAAATAAATGA
Found at i:9448075 original size:39 final size:39
Alignment explanation
Indices: 9448032--9448154 Score: 106
Period size: 39 Copynumber: 3.1 Consensus size: 39
9448022 TTAAGGGCTA
*
9448032 AATTGATAGAAATTCAAGTTAGAAATGAAATAATGATTG
1 AATTGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
* ** ** *** *
9448071 AATTGTAAAGTGATTCATAAGTT--TTATGCTTTAAGGATTA
1 AATTG-ATAGAAATTC--AAGTTAGAAATGAAATAAGGATTG
*
9448111 AATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
1 AATTGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
9448150 AATTG
1 AATTG
9448155 TAAAGTGATT
Statistics
Matches: 58, Mismatches: 21, Indels: 10
0.65 0.24 0.11
Matches are distributed among these distances:
37 5 0.09
39 27 0.47
40 21 0.36
42 5 0.09
ACGTcount: A:0.45, C:0.03, G:0.19, T:0.33
Consensus pattern (39 bp):
AATTGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
Found at i:9448121 original size:79 final size:79
Alignment explanation
Indices: 9448022--9448192 Score: 306
Period size: 79 Copynumber: 2.2 Consensus size: 79
9448012 AAATGATGAA
* * *
9448022 TTAAGGGCTAAATTGATAGAAATTCAAGTTAGAAATGAAATAATGATTGAATTGTAAAGTGATTC
1 TTAAGGACTAAATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
9448087 ATAAGTTTTATGCT
66 ATAAGTTTTATGCT
*
9448101 TTAAGGATTAAATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
1 TTAAGGACTAAATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
9448166 ATAAGTTTTATGCT
66 ATAAGTTTTATGCT
9448180 TTAAGGACTAAAT
1 TTAAGGACTAAAT
9448193 TGAAAGAATT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 87 1.00
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.35
Consensus pattern (79 bp):
TTAAGGACTAAATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
ATAAGTTTTATGCT
Found at i:9448185 original size:40 final size:40
Alignment explanation
Indices: 9448066--9448186 Score: 113
Period size: 40 Copynumber: 3.0 Consensus size: 40
9448056 ATGAAATAAT
9448066 GATTGAATTGTAAAGTGATTCATAAGTTTTATGCTTTAAG
1 GATTGAATTGTAAAGTGATTCATAAGTTTTATGCTTTAAG
* * * ** ** ***
9448106 GATTAAATAG-ATAGAAATTC--AAGTTAGAAATGAAATAAG
1 GATTGAATTGTAAAGTGATTCATAAGTT--TTATGCTTTAAG
9448145 GATTGAATTGTAAAGTGATTCATAAGTTTTATGCTTTAAG
1 GATTGAATTGTAAAGTGATTCATAAGTTTTATGCTTTAAG
9448185 GA
1 GA
9448187 CTAAATTGAA
Statistics
Matches: 56, Mismatches: 20, Indels: 10
0.65 0.23 0.12
Matches are distributed among these distances:
37 5 0.09
39 22 0.39
40 24 0.43
42 5 0.09
ACGTcount: A:0.40, C:0.04, G:0.20, T:0.36
Consensus pattern (40 bp):
GATTGAATTGTAAAGTGATTCATAAGTTTTATGCTTTAAG
Found at i:9449719 original size:45 final size:45
Alignment explanation
Indices: 9449525--9449713 Score: 279
Period size: 45 Copynumber: 4.2 Consensus size: 45
9449515 CTATTACCGC
* * *
9449525 TACTGCTACTGTTACCGATTCGGCACCTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
9449570 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
9449615 TACTGTTACCGCTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * * * *
9449660 TACTGTTACCATTACCGATTCAGCTCTTTGTGTGTTGAATACTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
9449705 TACTATTAC
1 TACTGTTAC
9449714 TATTACTGTT
Statistics
Matches: 131, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 131 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:9449932 original size:18 final size:18
Alignment explanation
Indices: 9449911--9450181 Score: 176
Period size: 18 Copynumber: 14.6 Consensus size: 18
9449901 TAACTGATTA
*
9449911 TTACCGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
9449929 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
9449947 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* *
9449965 TTACTGAATAATTGAATA
1 TTACTGAATAATTGACTG
* *
9449983 TTACTGAATAATTGATTA
1 TTACTGAATAATTGACTG
* *
9450001 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
9450019 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
9450037 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
9450056 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
9450073 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
9450091 TTACTGGATAACCGATCAATTGA-TCG
1 TTACT-G---A---AT-AATTGACT-G
* * ** *
9450117 ATACTGAATAACTGGTTA
1 TTACTGAATAATTGACTG
* *
9450135 TTATTGAATAATTGATTG
1 TTACTGAATAATTGACTG
*
9450153 TTACTGAATAACTGACTG
1 TTACTGAATAATTGACTG
9450171 TTACTGAATAA
1 TTACTGAATAA
9450182 ATAATTATTC
Statistics
Matches: 205, Mismatches: 28, Indels: 40
0.75 0.10 0.15
Matches are distributed among these distances:
17 18 0.09
18 150 0.73
19 20 0.10
22 2 0.01
25 4 0.02
26 11 0.05
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:9450025 original size:54 final size:54
Alignment explanation
Indices: 9449899--9450181 Score: 205
Period size: 54 Copynumber: 5.1 Consensus size: 54
9449889 AAAGGTATAA
* * * * * *
9449899 AATAACTGATTATTACCGAATAATTGACTGTTACCGGATAATTGACTGTTACTG
1 AATAACTGATTGTTACTGAATAATTGACTGTTACTGAATAATTGAATATTACTG
* * * * * *
9449953 GAT-ATTAGACTGTTACTGAATAATTGAATATTACTGAATAATTGATTATTACTG
1 AATAACT-GATTGTTACTGAATAATTGACTGTTACTGAATAATTGAATATTACTG
* *
9450007 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTGAATAACTT-AATAGTTACTG
1 AATAACTGATTGTTACTGAAT-AATTGACTGTTACTGAATAA-TTGAATA-TTACTG
* * * *
9450062 AATATCTGATT-TTACTGAATAATTGACTGTTACTGGATAACCGATCAATTGATCGATACTG
1 AATAACTGATTGTTACTGAATAATTGACTGTTACTGAATAA---TTGAA-T-AT---TACTG
* * * * * * *
9450123 AATAACTGGTTATTATTGAATAATTGATTGTTACTGAATAACTGACTGTTACTG
1 AATAACTGATTGTTACTGAATAATTGACTGTTACTGAATAATTGAATATTACTG
9450177 AATAA
1 AATAA
9450182 ATAATTATTC
Statistics
Matches: 180, Mismatches: 34, Indels: 30
0.74 0.14 0.12
Matches are distributed among these distances:
53 4 0.02
54 104 0.58
55 22 0.12
56 1 0.01
57 3 0.02
58 3 0.02
59 3 0.02
61 14 0.08
62 26 0.14
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (54 bp):
AATAACTGATTGTTACTGAATAATTGACTGTTACTGAATAATTGAATATTACTG
Found at i:9450179 original size:36 final size:36
Alignment explanation
Indices: 9449899--9450181 Score: 196
Period size: 36 Copynumber: 7.6 Consensus size: 36
9449889 AAAGGTATAA
* * * * *
9449899 AATAACTGATTATTACCGAATAATTGACTGTTACCG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
* * * *
9449935 GATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 AATAACTGACTGTTACTGAATAATT-GATTGTTACTG
* * * *
9449971 AATAATTGAATATTACTGAATAATTGATTATTACTG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
* * * *
9450007 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGACTGTTACTGAAT-AATTGATTGTTACTG
* *
9450043 AATAACTTAATAGTTACTGAAT-ATCTGATT-TTACTG
1 AATAACTGACT-GTTACTGAATAAT-TGATTGTTACTG
* * *
9450079 AATAATTGACTGTTACTGGATAACCGATCAATTGATCGATACTG
1 AATAACTGACTGTTACT-G---A---AT-AATTGATTGTTACTG
** * *
9450123 AATAACTGGTTATTATTGAATAATTGATTGTTACTG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
9450159 AATAACTGACTGTTACTGAATAA
1 AATAACTGACTGTTACTGAATAA
9450182 ATAATTATTC
Statistics
Matches: 190, Mismatches: 41, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
35 10 0.05
36 132 0.69
37 20 0.11
39 1 0.01
40 1 0.01
42 2 0.01
43 5 0.03
44 19 0.10
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (36 bp):
AATAACTGACTGTTACTGAATAATTGATTGTTACTG
Found at i:9453173 original size:21 final size:20
Alignment explanation
Indices: 9453128--9453195 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
9453118 AACAAATGAA
* *
9453128 AAATTAGAATGAAAAA-ATT
1 AAATTAAAATAAAAAATATT
9453147 AAATTAAAA-ACAAAAATATT
1 AAATTAAAATA-AAAAATATT
*
9453167 AAAATTAAAATAAAAAATAGCT
1 -AAATTAAAATAAAAAATA-TT
9453189 AAATTAA
1 AAATTAA
9453196 TAGAAATAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.32
20 3 0.07
21 23 0.56
22 2 0.05
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (20 bp):
AAATTAAAATAAAAAATATT
Found at i:9454168 original size:100 final size:100
Alignment explanation
Indices: 9453995--9454194 Score: 366
Period size: 100 Copynumber: 2.0 Consensus size: 100
9453985 ACAAGAAACA
9453995 AGAAAAGCCATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
1 AGAAAAGCCATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
9454060 CAGAGTCGGCTTCAATGGTG-TTTTCTGAGTTGTTT
66 CAGAGTCGGCTTCAATGGTGTTTTTC-GAGTTGTTT
* *
9454095 AGAAAAGTCATAATGAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
1 AGAAAAGCCATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
9454160 CAGAGTCGGCTTCAATGGTGTTTTTCGAGTTGTTT
66 CAGAGTCGGCTTCAATGGTGTTTTTCGAGTTGTTT
9454195 TCTTTAATAA
Statistics
Matches: 97, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
100 92 0.95
101 5 0.05
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (100 bp):
AGAAAAGCCATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
CAGAGTCGGCTTCAATGGTGTTTTTCGAGTTGTTT
Found at i:9458299 original size:12 final size:12
Alignment explanation
Indices: 9458284--9458363 Score: 60
Period size: 12 Copynumber: 6.6 Consensus size: 12
9458274 GTTATATAAA
9458284 ATATTATTATTT
1 ATATTATTATTT
**
9458296 ATA-TATTATCC
1 ATATTATTATTT
9458307 AT-TATATTATTT
1 ATAT-TATTATTT
9458319 ATATTATTATTTT
1 ATATTATTA-TTT
*
9458332 ACATT-TTATTT
1 ATATTATTATTT
9458343 ATAAATT-TTATTAT
1 AT--ATTATTATT-T
9458357 ATATTAT
1 ATATTAT
9458364 ATGTTATTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
11 12 0.22
12 22 0.41
13 17 0.31
14 3 0.06
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (12 bp):
ATATTATTATTT
Found at i:9458363 original size:7 final size:7
Alignment explanation
Indices: 9458246--9458378 Score: 54
Period size: 7 Copynumber: 20.0 Consensus size: 7
9458236 ATTAAATACC
9458246 TTATATA
1 TTATATA
*
9458253 TTATTTA
1 TTATATA
9458260 TT-T-T-
1 TTATATA
*
9458264 TTAAATA
1 TTATATA
9458271 TTAGTTATA
1 TTA--TATA
* *
9458280 TAAAATA
1 TTATATA
9458287 TTAT-TA
1 TTATATA
9458293 TTTATATA
1 -TTATATA
**
9458301 TTATCCA
1 TTATATA
9458308 TTATATTA
1 TTATA-TA
9458316 TT-TATA
1 TTATATA
9458322 TTAT-TA
1 TTATATA
* *
9458328 TTTTACA
1 TTATATA
*
9458335 TTTTAT-
1 TTATATA
*
9458341 TTATAAA
1 TTATATA
9458348 TT-T-TA
1 TTATATA
9458353 TTATATA
1 TTATATA
*
9458360 TTATATG
1 TTATATA
9458367 TTAT-TA
1 TTATATA
9458373 -TATATA
1 TTATATA
9458379 CTATTCCTTA
Statistics
Matches: 93, Mismatches: 19, Indels: 29
0.66 0.13 0.21
Matches are distributed among these distances:
4 2 0.02
5 7 0.08
6 22 0.24
7 52 0.56
8 5 0.05
9 5 0.05
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (7 bp):
TTATATA
Found at i:9458433 original size:22 final size:23
Alignment explanation
Indices: 9458363--9458433 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 23
9458353 TTATATATTA
* * *
9458363 TATGTTATTATATATACTATTCCT
1 TATGTTATTAT-TTTATTATTCAT
* **
9458387 TATGTTTTTATTTTATTATAAAT
1 TATGTTATTATTTTATTATTCAT
9458410 TATG-TATTATTTTATTATTCAT
1 TATGTTATTATTTTATTATTCAT
9458432 TA
1 TA
9458434 ATTGTCTAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 17 0.45
23 11 0.29
24 10 0.26
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.61
Consensus pattern (23 bp):
TATGTTATTATTTTATTATTCAT
Found at i:9458513 original size:11 final size:9
Alignment explanation
Indices: 9458497--9458585 Score: 63
Period size: 10 Copynumber: 8.9 Consensus size: 9
9458487 ATATTATCCT
9458497 TATTTATATGA
1 TATTTAT-T-A
9458508 TATTTATTA
1 TATTTATTA
9458517 TATTTATTTA
1 TATTTA-TTA
9458527 TATTTCATTA
1 TATTT-ATTA
9458537 TATTTTATTTA
1 TA-TTTA-TTA
9458548 TATATT-TTA
1 TAT-TTATTA
* *
9458557 TTACTTATCA
1 -TATTTATTA
9458567 TATATTATTA
1 TAT-TTATTA
9458577 TATATTATT
1 TAT-TTATT
9458586 CCCTGTATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
9 14 0.21
10 34 0.52
11 18 0.27
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (9 bp):
TATTTATTA
Found at i:9458514 original size:15 final size:14
Alignment explanation
Indices: 9458496--9458558 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 14
9458486 TATATTATCC
9458496 TTATTTATATGATAT
1 TTATTTATAT-ATAT
*
9458511 TTA-TTATATTTAT
1 TTATTTATATATAT
9458524 TTATATT-TCATTATATT
1 TTAT-TTAT-A-TATA-T
9458541 TTATTTATATAT-T
1 TTATTTATATATAT
9458554 TTATT
1 TTATT
9458559 ACTTATCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
13 12 0.30
14 7 0.17
15 9 0.22
16 6 0.15
17 6 0.15
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (14 bp):
TTATTTATATATAT
Found at i:9458515 original size:24 final size:23
Alignment explanation
Indices: 9458480--9458529 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
9458470 TAAATAATAG
*
9458480 TATGTATATATTATCCTTATTTA
1 TATGTATATATTATACTTATTTA
* *
9458503 TATGATATTTATTATATTTATTTA
1 TATG-TATATATTATACTTATTTA
9458527 TAT
1 TAT
9458530 TTCATTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (23 bp):
TATGTATATATTATACTTATTTA
Found at i:9458545 original size:21 final size:19
Alignment explanation
Indices: 9458497--9458585 Score: 74
Period size: 20 Copynumber: 4.4 Consensus size: 19
9458487 ATATTATCCT
*
9458497 TATTTATATGATATTTATTA
1 TATTTAT-TTATATTTATTA
9458517 TATTTATTTATATTTCATTA
1 TATTTATTTATATTT-ATTA
9458537 TATTTTATTTATATATT-TTA
1 TA-TTTATTTATAT-TTATTA
* *
9458557 TTACTTA-TCATATATTATTA
1 -TATTTATTTATAT-TTATTA
9458577 TATATTATT
1 TAT-TTATT
9458586 CCCTGTATTA
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
19 17 0.29
20 25 0.43
21 14 0.24
22 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (19 bp):
TATTTATTTATATTTATTA
Found at i:9458557 original size:20 final size:21
Alignment explanation
Indices: 9458496--9458582 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 21
9458486 TATATTATCC
9458496 TTATTTATATGATATTTATTATAT
1 TTATTTATAT-AT-TTTA-TATAT
9458520 TTATTTATAT-TTCATTATAT-T
1 TTATTTATATATT--TTATATAT
*
9458541 TTATTTATATATTTTAT-TAC
1 TTATTTATATATTTTATATAT
*
9458561 TTA-TCATATATTATTATATAT
1 TTATTTATATATT-TTATATAT
9458582 T
1 T
9458583 ATTCCCTGTA
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
19 9 0.17
20 11 0.20
21 15 0.28
22 6 0.11
23 3 0.06
24 10 0.19
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (21 bp):
TTATTTATATATTTTATATAT
Found at i:9458574 original size:17 final size:16
Alignment explanation
Indices: 9458535--9458576 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
9458525 TATATTTCAT
*
9458535 TATATT-TTATTTATA
1 TATATTATTACTTATA
*
9458550 TATTTTATTACTTATCA
1 TATATTATTACTTAT-A
9458567 TATATTATTA
1 TATATTATTA
9458577 TATATTATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 5 0.23
16 7 0.32
17 10 0.45
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATTATTACTTATA
Found at i:9458579 original size:10 final size:10
Alignment explanation
Indices: 9458507--9458585 Score: 69
Period size: 10 Copynumber: 8.0 Consensus size: 10
9458497 TATTTATATG
9458507 ATAT-TTATT
1 ATATATTATT
9458516 ATAT-TTATT
1 ATATATTATT
9458525 -TATATTTCATT
1 ATATA-TT-ATT
*
9458536 ATATTTTATTT
1 ATATATTA-TT
9458547 ATATATT-TT
1 ATATATTATT
*
9458556 AT-TACTTATC
1 ATATA-TTATT
9458566 ATATATTATT
1 ATATATTATT
9458576 ATATATTATT
1 ATATATTATT
9458586 CCCTGTATTA
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
8 5 0.09
9 15 0.26
10 20 0.34
11 15 0.26
12 3 0.05
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (10 bp):
ATATATTATT
Found at i:9468652 original size:222 final size:218
Alignment explanation
Indices: 9468285--9468804 Score: 688
Period size: 222 Copynumber: 2.3 Consensus size: 218
9468275 GACCTTCAGG
*
9468285 TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGA
1 TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGA
* * * *
9468350 AACAGATTTGGCATCTCCGTATTCGACGGAAAGCAGATCGAAGACATAACAGATCTAACCTTCGG
66 AACAGATTTGGAACCTCCATATTCGACGGAAAGCAGATCGAAGACATAACAGATCTAACATTCGG
* *
9468415 ATGTTTTCACATCGAAGTAGATACAAGATGATTTGGCATCCTTGCGTTTTACAAGGAGTAGATAG
131 ATGTTTTCACATCGAAGCAGATACAAGATGATTTGGCATCCTTGCG-TTTACAAGGAGCAGATAG
9468480 AAGACATAGCAGATTTGGCTTTCACA
195 AAG--ATAGCAGATTTGGCTTTCACA
* * *
9468506 TGTTTACGCTGAAGCAAGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAG
1 TGTTTACACTGAAGC-AGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * **
9468571 GAACAGATTTGGAACCTCCATATTCGACGGAGAGTAGATCGAAGATATAGTAGATCTAACATTCG
65 AAACAGATTTGGAACCTCCATATTCGACGGAAAGCAGATCGAAGACATAACAGATCTAACATTCG
* * *
9468636 GATGTTTTCGCATCGAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCG
130 GATGTTTTCACATCGAAGCAGATACAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATAG
* *
9468701 AAGATAGCAGATTTGG-TATCTCTA
195 AAGATAGCAGATTTGGCTTTCAC-A
* * *
9468725 TATTGT-CA--GAGAGCAGATCGAAGATAGCAGGTTTGGCATCTCTGTATTGTCAGAGAACAGAT
1 TGTT-TACACTGA-AGCAGATCCAAGAT-G-A--TTTGGCATCTCTGTATTGTCAGAGAACAAAT
9468787 CGAAGATAACAGATTTGG
60 CGAAGA-AACAGATTTGG
9468805 TATTCCTAAG
Statistics
Matches: 263, Mismatches: 27, Indels: 17
0.86 0.09 0.06
Matches are distributed among these distances:
217 12 0.05
218 8 0.03
219 19 0.07
220 1 0.00
221 67 0.25
222 156 0.59
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (218 bp):
TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGA
AACAGATTTGGAACCTCCATATTCGACGGAAAGCAGATCGAAGACATAACAGATCTAACATTCGG
ATGTTTTCACATCGAAGCAGATACAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATAGA
AGATAGCAGATTTGGCTTTCACA
Found at i:9468739 original size:44 final size:44
Alignment explanation
Indices: 9468691--9468807 Score: 189
Period size: 44 Copynumber: 2.7 Consensus size: 44
9468681 CGTTTACAAG
9468691 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGA
* * *
9468735 GAGCAGATCGAAGATAGCAGGTTTGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGA
* *
9468779 GAACAGATCGAAGATAACAGATTTGGTAT
1 GAGCAGATCGAAGATAGCAGATTTGGTAT
9468808 TCCTAAGTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.27
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGA
Found at i:9470410 original size:12 final size:12
Alignment explanation
Indices: 9470395--9470456 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
9470385 GTTATATAAA
9470395 ATATTATTATTT
1 ATATTATTATTT
**
9470407 ATA-TATTATCC
1 ATATTATTATTT
9470418 AT-TATATTATTT
1 ATAT-TATTATTT
9470430 ATATTATTATTAT
1 ATATTATTATT-T
*
9470443 ACATT-TTATTT
1 ATATTATTATTT
9470454 ATA
1 ATA
9470457 AATTTTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
11 11 0.28
12 23 0.57
13 6 0.15
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATTATTATTT
Found at i:9470544 original size:22 final size:23
Alignment explanation
Indices: 9470474--9470544 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 23
9470464 TTATATACTA
* * *
9470474 TATGTTATTATATATACTATTCCT
1 TATGTTATTAT-TTTATTATTCAT
* **
9470498 TATGTTTTTATTTTATTATAAAT
1 TATGTTATTATTTTATTATTCAT
9470521 TATG-TATTATTTTATTATTCAT
1 TATGTTATTATTTTATTATTCAT
9470543 TA
1 TA
9470545 ATTGTCTAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 17 0.45
23 11 0.29
24 10 0.26
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.61
Consensus pattern (23 bp):
TATGTTATTATTTTATTATTCAT
Found at i:9470634 original size:24 final size:24
Alignment explanation
Indices: 9470607--9470673 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
9470597 TATACTATCC
*
9470607 TTATTTATATGATATTTATTGTA-T
1 TTATTTATAT-ATATTTATTATATT
*
9470631 TTATTTATATTTTATTTA-TATATT
1 TTATTTATA-TATATTTATTATATT
9470655 TTATTTATATAT-TTTATTA
1 TTATTTATATATATTTATTA
9470674 CATACCATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 4 0.11
23 7 0.19
24 25 0.68
25 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (24 bp):
TTATTTATATATATTTATTATATT
Found at i:9470637 original size:13 final size:13
Alignment explanation
Indices: 9470636--9470672 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
9470626 TGTATTTATT
9470636 TATATTTTATTTA
1 TATATTTTATTTA
9470649 TATATTTTATTTA
1 TATATTTTATTTA
9470662 TATATTTTATT
1 TATATTTTATT
9470673 ACATACCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TATATTTTATTTA
Found at i:9470663 original size:11 final size:11
Alignment explanation
Indices: 9470607--9470664 Score: 53
Period size: 11 Copynumber: 4.9 Consensus size: 11
9470597 TATACTATCC
*
9470607 TTATTTATATG
1 TTATTTATATT
* *
9470618 ATATTTATTGTAT
1 TTATTTA-TAT-T
9470631 TTATTTATATT
1 TTATTTATATT
9470642 TTATTTATATATT
1 TTA-TT-TATATT
9470655 TTATTTATAT
1 TTATTTATAT
9470665 ATTTTATTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
11 15 0.39
12 8 0.21
13 15 0.39
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (11 bp):
TTATTTATATT
Found at i:9479293 original size:17 final size:17
Alignment explanation
Indices: 9479271--9479304 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
9479261 ATATCATATA
9479271 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
9479288 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
9479305 GCATATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
ATATCATATCTAAGATT
Found at i:9480725 original size:205 final size:205
Alignment explanation
Indices: 9479939--9481100 Score: 1888
Period size: 205 Copynumber: 5.7 Consensus size: 205
9479929 AAATCTGTTT
* * *
9479939 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCCTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * * * *
9480004 GCAAAAACCAAATCTGCTATGCCTTCGATTTGTTCCTTGTAAGCACAAGGATTCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
9480069 GGATCTGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
9480129 AGATGCCAGA
196 AGATGCCAGA
* *
9480139 CTTCTATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
9480204 GTG-AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCTAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
9480268 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
9480333 AGATGCCAGA
196 AGATGCCAGA
* *
9480343 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
9480408 GTG-AAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGTCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
9480472 GGATTTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
9480537 AGATGCCAGA
196 AGATGCCAGA
* * *
9480547 CTTCGATTTATTCTCTGACAATACAGAGATGGCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
9480612 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTTCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
9480677 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
9480742 AGATGCCAGA
196 AGATGCCAGA
* *
9480752 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGTGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
9480817 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
9480882 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCGATATATCTACTCTCCGCCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
9480947 AGATGCCAAA
196 AGATGCCAGA
*
9480957 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * * ** *
9481022 GCGAAAACCAAATAAGCTATGTTTTCGATTTGCTCAGTGTAAGAACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
9481087 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
9481101 CCAGATCTGC
Statistics
Matches: 899, Mismatches: 56, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
199 68 0.08
200 61 0.07
201 1 0.00
204 315 0.35
205 446 0.50
206 8 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:9482057 original size:8 final size:8
Alignment explanation
Indices: 9482044--9482115 Score: 74
Period size: 8 Copynumber: 8.6 Consensus size: 8
9482034 GGCTTCTCCA
9482044 TTTTTCTT
1 TTTTTCTT
9482052 TTTTTC-T
1 TTTTTCTT
9482059 TTTTTCTTT
1 TTTTTC-TT
9482068 TTTTTCTT
1 TTTTTCTT
* *
9482076 TTTATATT
1 TTTTTCTT
9482084 TTTTTCTCT
1 TTTTTCT-T
*
9482093 TTTTCTTTT
1 TTTT-TCTT
9482102 CTTTTTCTT
1 -TTTTTCTT
9482111 TTTTT
1 TTTTT
9482116 TTGAAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
7 7 0.13
8 24 0.45
9 16 0.30
10 6 0.11
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:9482061 original size:6 final size:6
Alignment explanation
Indices: 9482052--9482117 Score: 61
Period size: 6 Copynumber: 11.7 Consensus size: 6
9482042 CATTTTTCTT
* * *
9482052 TTTTTC TTTTT- TCTTT- TTTTTC TTTTTA TATTTT- TTTCTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC
9482098 -TTTTC TTTTTC TTTTT- TTTT
1 TTTTTC TTTTTC TTTTTC TTTT
9482118 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
5 20 0.39
6 27 0.53
7 4 0.08
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:9482069 original size:16 final size:16
Alignment explanation
Indices: 9482044--9482114 Score: 83
Period size: 16 Copynumber: 4.3 Consensus size: 16
9482034 GGCTTCTCCA
9482044 TTTTTC-TTTTTTTCT
1 TTTTTCTTTTTTTTCT
9482059 TTTTTCTTTTTTTTCT
1 TTTTTCTTTTTTTTCT
*
9482075 TTTTAT-ATTTTTTTCT
1 TTTT-TCTTTTTTTTCT
9482091 CTTTTTCTTTTCTTTTTCT
1 -TTTTTC-TTT-TTTTTCT
9482110 TTTTT
1 TTTTT
9482115 TTTGAAATAG
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
15 6 0.12
16 23 0.48
17 5 0.10
18 7 0.15
19 7 0.15
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTTTTTTTCT
Found at i:9482072 original size:24 final size:25
Alignment explanation
Indices: 9482044--9482114 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
9482034 GGCTTCTCCA
9482044 TTTTTCTTTTTTTCTTTTTTCT-TT
1 TTTTTCTTTTTTTCTTTTTTCTCTT
9482068 TTTTTCTTTTTATAT-TTTTTTCTCTT
1 TTTTTCTTTTT-T-TCTTTTTTCTCTT
9482094 TTTCTT-TTCTTTTTCTTTTTT
1 TTT-TTCTT-TTTTTCTTTTTT
9482115 TTTGAAATAG
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
24 11 0.27
25 10 0.24
26 15 0.37
27 5 0.12
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.85
Consensus pattern (25 bp):
TTTTTCTTTTTTTCTTTTTTCTCTT
Found at i:9482096 original size:11 final size:11
Alignment explanation
Indices: 9482045--9482117 Score: 59
Period size: 9 Copynumber: 6.9 Consensus size: 11
9482035 GCTTCTCCAT
9482045 TTTTCTTTTT-
1 TTTTCTTTTTC
*
9482055 TTCT-TTTTTC
1 TTTTCTTTTTC
9482065 -TTT-TTTTTC
1 TTTTCTTTTTC
*
9482074 TTTT-TATATTTT
1 TTTTCT-T-TTTC
9482086 TTTCTCTTTTTC
1 TTT-TCTTTTTC
9482098 TTTTCTTTTTC
1 TTTTCTTTTTC
9482109 TTTT-TTTTT
1 TTTTCTTTTT
9482118 GAAATAGAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
9 13 0.25
10 12 0.23
11 13 0.25
12 12 0.23
13 2 0.04
14 1 0.02
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:9482117 original size:16 final size:16
Alignment explanation
Indices: 9482044--9482117 Score: 82
Period size: 17 Copynumber: 4.6 Consensus size: 16
9482034 GGCTTCTCCA
*
9482044 TTTTTCTTTTTTTCT-
1 TTTTTCTTTTTTTTTC
9482059 TTTTTC-TTTTTTTTC
1 TTTTTCTTTTTTTTTC
*
9482074 TTTTTATATTTTTTTCTC
1 TTTTTCT-TTTTTTT-TC
9482092 TTTTTCTTTTCTTTTTC
1 TTTTTCTTTT-TTTTTC
9482109 TTTTT-TTTT
1 TTTTTCTTTT
9482118 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
14 7 0.14
15 11 0.22
16 4 0.08
17 17 0.33
18 12 0.24
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTC
Found at i:9487516 original size:28 final size:28
Alignment explanation
Indices: 9487457--9487510 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
9487447 TCAAATGTAT
9487457 AAAAGATAGGAATAAATATACATATTAC
1 AAAAGATAGGAATAAATATACATATTAC
9487485 AAAAGATAGGAATAAATATACATATT
1 AAAAGATAGGAATAAATATACATATT
9487511 TGAAAAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.57, C:0.06, G:0.11, T:0.26
Consensus pattern (28 bp):
AAAAGATAGGAATAAATATACATATTAC
Found at i:9491840 original size:23 final size:22
Alignment explanation
Indices: 9491805--9491847 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
9491795 GTTAAATTAA
*
9491805 TAAAATAAAAAATTAAATGTTT
1 TAAAAAAAAAAATTAAATGTTT
*
9491827 TAAAAAAAAGAAATTACATGT
1 TAAAAAAAA-AAATTAAATGT
9491848 CATCTGCCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.30
Consensus pattern (22 bp):
TAAAAAAAAAAATTAAATGTTT
Found at i:9491981 original size:27 final size:29
Alignment explanation
Indices: 9491938--9492014 Score: 86
Period size: 27 Copynumber: 2.7 Consensus size: 29
9491928 ATAACGTTTG
* * *
9491938 ACAAGTTTATGTACCAAATT-GAACAAAA
1 ACAAATTTAGGTACCAAATTAGAAAAAAA
9491966 A-AAATTTAGGTACCAAATTAGGAAAAAAA
1 ACAAATTTAGGTACCAAATTA-GAAAAAAA
*
9491995 ATCAAATTTAGGTACAAAAT
1 A-CAAATTTAGGTACCAAAT
9492015 ATTATATTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 16 0.39
28 1 0.02
29 8 0.20
31 16 0.39
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (29 bp):
ACAAATTTAGGTACCAAATTAGAAAAAAA
Found at i:9492005 original size:31 final size:27
Alignment explanation
Indices: 9491943--9492014 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 27
9491933 GTTTGACAAG
* *
9491943 TTTATGTACCAAATTGAACAAAAAAAA
1 TTTAGGTACCAAATTGAAAAAAAAAAA
9491970 TTTAGGTACCAAATTAGGAAAAAAAATCAAA
1 TTTAGGTACCAAATT--GAAAAAAAA--AAA
*
9492001 TTTAGGTACAAAAT
1 TTTAGGTACCAAAT
9492015 ATTATATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 14 0.37
29 8 0.21
31 16 0.42
ACGTcount: A:0.53, C:0.10, G:0.11, T:0.26
Consensus pattern (27 bp):
TTTAGGTACCAAATTGAAAAAAAAAAA
Found at i:9492803 original size:32 final size:32
Alignment explanation
Indices: 9492760--9492822 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
9492750 TATTAAGAAT
*
9492760 GAATTTGGACATATAGTTGTCCAAATACATTA
1 GAATTTCGACATATAGTTGTCCAAATACATTA
* *
9492792 GAATTTCGACATATGGTTGTTCAAATACATT
1 GAATTTCGACATATAGTTGTCCAAATACATT
9492823 TATGTAACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
GAATTTCGACATATAGTTGTCCAAATACATTA
Found at i:9494030 original size:38 final size:38
Alignment explanation
Indices: 9493979--9494110 Score: 174
Period size: 38 Copynumber: 3.5 Consensus size: 38
9493969 AACACACTAG
*
9493979 TTTGCTCATAAGAGCTATTCCATCTGATAACATGCCAA
1 TTTGCTCATAAGAGCTATTCCATCCGATAACATGCCAA
* * * **
9494017 TTTGCTTATAAGAGTTATTCTATAGGATAACATGCCAA
1 TTTGCTCATAAGAGCTATTCCATCCGATAACATGCCAA
* * *
9494055 TTTTCTCATAAGAGCTATTCCATCCGTTAACATGCCAG
1 TTTGCTCATAAGAGCTATTCCATCCGATAACATGCCAA
*
9494093 TTTGCTTATAAGAGCTAT
1 TTTGCTCATAAGAGCTAT
9494111 AATTGAAAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 79 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (38 bp):
TTTGCTCATAAGAGCTATTCCATCCGATAACATGCCAA
Found at i:9498955 original size:35 final size:35
Alignment explanation
Indices: 9498916--9498990 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
9498906 ACAAGTAAGC
*
9498916 TTATATCAAACTTGAGTATTTGGTTACATGTGAAT
1 TTATATCAAACATGAGTATTTGGTTACATGTGAAT
** * * *
9498951 TTATATTGAGCATGTGTATTTGGTTACATGTGAGT
1 TTATATCAAACATGAGTATTTGGTTACATGTGAAT
9498986 TTATA
1 TTATA
9498991 CTGAGCTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (35 bp):
TTATATCAAACATGAGTATTTGGTTACATGTGAAT
Found at i:9498982 original size:16 final size:16
Alignment explanation
Indices: 9498931--9498982 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
9498921 TCAAACTTGA
9498931 GTATTTGGTTACATGT
1 GTATTTGGTTACATGT
* **
9498947 GAATTTATATTGAGCATGT
1 GTATTT-GGTT-A-CATGT
9498966 GTATTTGGTTACATGT
1 GTATTTGGTTACATGT
9498982 G
1 G
9498983 AGTTTATACT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
16 11 0.41
17 3 0.11
18 3 0.11
19 10 0.37
ACGTcount: A:0.23, C:0.06, G:0.25, T:0.46
Consensus pattern (16 bp):
GTATTTGGTTACATGT
Found at i:9503734 original size:27 final size:27
Alignment explanation
Indices: 9503686--9503842 Score: 162
Period size: 27 Copynumber: 5.8 Consensus size: 27
9503676 GCGAGGCTAC
* *
9503686 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
9503713 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
9503739 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
9503766 CAGATAATTGTGGCATAGCCACTAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
9503793 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
9503820 TAGATAAATTGTGGCATAGCCAC
1 CAGAT--ATTGTGGCAGAGCCAC
9503843 TAGGACGCTT
Statistics
Matches: 111, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
26 10 0.09
27 83 0.75
28 16 0.14
29 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:9503776 original size:54 final size:54
Alignment explanation
Indices: 9503704--9503842 Score: 217
Period size: 54 Copynumber: 2.6 Consensus size: 54
9503694 GTGACGAAGT
*
9503704 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
9503758 CACCAGATCAGATAATTGTGGCATAGCCACTAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
9503812 CACCAGATTAGATAAATTGTGGCATAGCCAC
1 CACCAGATCAGAT-AATTGTGGCATAGCCAC
9503843 TAGGACGCTT
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.72
55 17 0.22
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:9506703 original size:119 final size:120
Alignment explanation
Indices: 9506521--9506743 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
9506511 TCCTCGTTCA
*
9506521 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
9506586 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
9506641 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
9506703 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
9506744 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:9506743 original size:40 final size:40
Alignment explanation
Indices: 9506519--9506743 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
9506509 GCTCCTCGTT
* *
9506519 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
9506559 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
9506599 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
9506639 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
9506678 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
9506719 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
9506744 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:9513479 original size:16 final size:16
Alignment explanation
Indices: 9513461--9513490 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9513451 TTTCGTAAAA
9513461 AAAAT-TTTGTTTTTG
1 AAAATCTTTGTTTTTG
9513476 AAAATCTTTGTTTTT
1 AAAATCTTTGTTTTT
9513491 TGTAAACCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.60
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:9514502 original size:27 final size:27
Alignment explanation
Indices: 9514454--9514610 Score: 153
Period size: 27 Copynumber: 5.8 Consensus size: 27
9514444 GCGAGGCTGC
* *
9514454 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
9514481 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
9514507 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
9514534 CAGATAATTGTAGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
9514561 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
9514588 TAGATAAATTGTGGCATAGCCAC
1 CAGAT--ATTGTGGCAGAGCCAC
9514611 TAGGACGCTT
Statistics
Matches: 109, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
26 9 0.08
27 82 0.75
28 16 0.15
29 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:9514544 original size:54 final size:54
Alignment explanation
Indices: 9514472--9514610 Score: 208
Period size: 54 Copynumber: 2.6 Consensus size: 54
9514462 GTGACGAAGT
* *
9514472 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
9514526 CACCAGATCAGATAATTGTAGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
9514580 CACCAGATTAGATAAATTGTGGCATAGCCAC
1 CACCAGATCAGAT-AATTGTGGCATAGCCAC
9514611 TAGGACGCTT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 5 0.06
54 56 0.73
55 16 0.21
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:9518618 original size:22 final size:22
Alignment explanation
Indices: 9518593--9518647 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
9518583 ACAGGGGCAT
9518593 ACGCCCGTGTGGAAAAGGCAAC
1 ACGCCCGTGTGGAAAAGGCAAC
**
9518615 ACGCCCGTGTGGAAGGGGCAAC
1 ACGCCCGTGTGGAAAAGGCAAC
*
9518637 ATGCCCGTGTG
1 ACGCCCGTGTG
9518648 ATCAATTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.24, C:0.27, G:0.36, T:0.13
Consensus pattern (22 bp):
ACGCCCGTGTGGAAAAGGCAAC
Found at i:9531756 original size:23 final size:23
Alignment explanation
Indices: 9531695--9531756 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 23
9531685 AGGATTCATT
* * *
9531695 ATGTGAA-CCTTTA-GTATATTT
1 ATGTGAACCCTTTATGTTTAATC
*
9531716 ATGCGAACCCTATT-TGTTTAATC
1 ATGTGAACCCT-TTATGTTTAATC
9531739 ATGTGAACCCTTTATGTT
1 ATGTGAACCCTTTATGTT
9531757 ATTACATCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 6 0.19
22 5 0.16
23 21 0.66
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.44
Consensus pattern (23 bp):
ATGTGAACCCTTTATGTTTAATC
Found at i:9531799 original size:44 final size:44
Alignment explanation
Indices: 9531738--9531896 Score: 205
Period size: 44 Copynumber: 3.6 Consensus size: 44
9531728 TTTGTTTAAT
**
9531738 CATGTGAACCCTTTATGTTATTACATCTGAACCCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTACATCTGAACCCTAGGTTATGA
*
9531782 CATGCGAACCCCCTATGTTATTACA-CGTGAACCCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTACATC-TGAACCCTAGGTTATGA
* *
9531826 CATGTGAACCCCCTATGTTATTACATGC-GAGCTCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTACAT-CTGAACCCTAGGTTATGA
* **
9531870 CATGTGAGCCCCAAACTGTTATTACAT
1 CATGTGAACCCCCTA-TGTTATTACAT
9531897 GCGAACCTTA
Statistics
Matches: 102, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
43 1 0.01
44 89 0.87
45 11 0.11
46 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
CATGTGAACCCCCTATGTTATTACATCTGAACCCTAGGTTATGA
Found at i:9531852 original size:23 final size:23
Alignment explanation
Indices: 9531738--9531852 Score: 121
Period size: 23 Copynumber: 5.2 Consensus size: 23
9531728 TTTGTTTAAT
**
9531738 CATGTGAACCCTTTATGTTATTA
1 CATGTGAACCCCCTATGTTATTA
* * *
9531761 CATCTGAA--CCCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTA
*
9531782 CATGCGAACCCCCTATGTTATTA
1 CATGTGAACCCCCTATGTTATTA
* * *
9531805 CACGTGAA--CCCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTA
9531826 CATGTGAACCCCCTATGTTATTA
1 CATGTGAACCCCCTATGTTATTA
9531849 CATG
1 CATG
9531853 CGAGCTCTAG
Statistics
Matches: 72, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
21 33 0.46
23 39 0.54
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (23 bp):
CATGTGAACCCCCTATGTTATTA
Found at i:9531873 original size:21 final size:21
Alignment explanation
Indices: 9531754--9531880 Score: 92
Period size: 21 Copynumber: 5.9 Consensus size: 21
9531744 AACCCTTTAT
* * *
9531754 GTTATTACATCTGAACCCTAG
1 GTTATGACATGTGAGCCCTAG
* * *
9531775 GTTATGACATGCGAACCCCCTAT
1 GTTATGACATGTG-A-GCCCTAG
* * *
9531798 GTTATTACACGTGAACCCTAG
1 GTTATGACATGTGAGCCCTAG
* *
9531819 GTTATGACATGTGAACCCCCTAT
1 GTTATGACATGTG-A-GCCCTAG
* * *
9531842 GTTATTACATGCGAGCTCTAG
1 GTTATGACATGTGAGCCCTAG
9531863 GTTATGACATGTGAGCCC
1 GTTATGACATGTGAGCCC
9531881 CAAACTGTTA
Statistics
Matches: 80, Mismatches: 22, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
21 45 0.56
22 4 0.05
23 31 0.39
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (21 bp):
GTTATGACATGTGAGCCCTAG
Found at i:9536672 original size:14 final size:12
Alignment explanation
Indices: 9536627--9536685 Score: 57
Period size: 13 Copynumber: 4.7 Consensus size: 12
9536617 CAGCTTAGCG
*
9536627 ATATTTCTAAAA
1 ATATTTTTAAAA
9536639 A-AGTTTTTAAAA
1 ATA-TTTTTAAAA
*
9536651 AGTGTTTTTAAAA
1 A-TATTTTTAAAA
9536664 ATTATTTTTAAGAA
1 A-TATTTTTAA-AA
9536678 ATATTTTT
1 ATATTTTT
9536686 TTATTTTATG
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
11 1 0.03
12 10 0.26
13 25 0.64
14 3 0.08
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (12 bp):
ATATTTTTAAAA
Found at i:9541455 original size:14 final size:14
Alignment explanation
Indices: 9541438--9541464 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9541428 TTTTTTAGTT
9541438 TAATTTTTGTTTTC
1 TAATTTTTGTTTTC
9541452 TAATTTTTGTTTT
1 TAATTTTTGTTTT
9541465 GTTTGTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (14 bp):
TAATTTTTGTTTTC
Found at i:9545383 original size:21 final size:21
Alignment explanation
Indices: 9545358--9545418 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
9545348 TTTTATTTAT
9545358 TTATTTATTATATTATTATTA
1 TTATTTATTATATTATTATTA
*
9545379 TTA-TTAGTTATAATATT-TTA
1 TTATTTA-TTATATTATTATTA
*
9545399 TTGCTTTATTAT-TTATTATT
1 TT-ATTTATTATATTATTATT
9545419 CTTAGTGTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
20 12 0.36
21 18 0.55
22 3 0.09
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (21 bp):
TTATTTATTATATTATTATTA
Found at i:9545438 original size:24 final size:25
Alignment explanation
Indices: 9545377--9545445 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 25
9545367 ATATTATTAT
*
9545377 TATTATTAGTTATAATATT-TTATTGC
1 TATTATTAGTTAT--TATTCTTAGTGC
*
9545403 T-TTATTATTTATTATTCTTAGTG-
1 TATTATTAGTTATTATTCTTAGTGC
*
9545426 TATTATTAGTTATTTTTCTT
1 TATTATTAGTTATTATTCTT
9545446 TTCTAATTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
23 5 0.14
24 21 0.57
25 10 0.27
26 1 0.03
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.64
Consensus pattern (25 bp):
TATTATTAGTTATTATTCTTAGTGC
Found at i:9547112 original size:6 final size:5
Alignment explanation
Indices: 9547083--9547117 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
9547073 ATTAAGTCTA
9547083 TTTAT TTTAT TTTAT TTTATT TTTAGT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTA-T TTTA-T TTTAT TTT
9547118 TATGATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
5 18 0.64
6 10 0.36
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:9551403 original size:26 final size:26
Alignment explanation
Indices: 9551364--9551419 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
9551354 TGATACAAAT
9551364 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
9551390 TGATAATG-GTTTAGGTAAATGTTCCA
1 TGATAATGAG-TTAGGTAAATGTTCCA
9551416 TGAT
1 TGAT
9551420 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 1 0.03
26 28 0.97
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGAGTTAGGTAAATGTTCCA
Found at i:9553078 original size:27 final size:25
Alignment explanation
Indices: 9553038--9553177 Score: 145
Period size: 27 Copynumber: 5.2 Consensus size: 25
9553028 AGGAAGCATC
*
9553038 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCT-AT
*
9553065 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCT-AT
*
9553092 CTGGTGGCTATGCCACGATTATCTAT
1 CTGGTGGCTCTGCCAC-ATTATCTAT
9553118 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACAT-TATCTA-T
** *
9553145 CTGGTGGCTCCACCACAATATCTTTAT
1 CTGGTGGCTCTGCCACATTATC--TAT
9553172 CTGGTG
1 CTGGTG
9553178 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.02
26 28 0.28
27 65 0.66
28 4 0.04
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (25 bp):
CTGGTGGCTCTGCCACATTATCTAT
Found at i:9553138 original size:53 final size:54
Alignment explanation
Indices: 9553038--9553153 Score: 207
Period size: 53 Copynumber: 2.2 Consensus size: 54
9553028 AGGAAGCATC
*
9553038 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
*
9553092 CTGGTGGCTATGCCACGATTATCT-ATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
9553145 CTGGTGGCT
1 CTGGTGGCT
9553154 CCACCACAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
53 37 0.62
54 23 0.38
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
Found at i:9566448 original size:6 final size:6
Alignment explanation
Indices: 9566429--9566461 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
9566419 TGACTTGTTC
*
9566429 TAAAAA TAATAA TAAAAA TAAAAA TAAAAA TAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAA
9566462 TACAATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
TAAAAA
Found at i:9574328 original size:24 final size:24
Alignment explanation
Indices: 9574296--9574358 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
9574286 AAGGGTACAT
* *
9574296 TGGCACTATGTGTGCGGTGTAGTA
1 TGGCACTATGTGTGCGGAGTAGAA
*
9574320 TGGCACTATGTGTGCGGAGTTGAA
1 TGGCACTATGTGTGCGGAGTAGAA
*
9574344 TAGCACTATGTGTGC
1 TGGCACTATGTGTGC
9574359 TGATTTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.19, C:0.14, G:0.35, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGAGTAGAA
Found at i:9574379 original size:26 final size:24
Alignment explanation
Indices: 9574298--9574368 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
9574288 GGGTACATTG
* * * *
9574298 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
9574322 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
9574346 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
9574369 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:9588054 original size:40 final size:40
Alignment explanation
Indices: 9587864--9588047 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
9587854 TTGAATAATG
* * * *
9587864 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
9587903 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
9587943 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
9587982 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAGTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
9588023 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
9588048 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 43 0.35
40 70 0.57
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:9588069 original size:79 final size:79
Alignment explanation
Indices: 9587916--9588080 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
9587906 GGACTAAGAT
* * **
9587916 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
9587981 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
9587995 CCGAAGGCATTTGTGCGAGTTAGT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
9588058 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
9588074 CCGAAGG
1 CCGAAGG
9588081 TATGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:9595759 original size:27 final size:27
Alignment explanation
Indices: 9595675--9595779 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
9595665 AGGAAGCGTC
* *
9595675 CTGGTGGCTATGCCATAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
9595702 CTGATGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
9595729 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
9595756 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
9595780 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.13
27 58 0.85
28 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:9599221 original size:43 final size:43
Alignment explanation
Indices: 9599051--9599206 Score: 140
Period size: 43 Copynumber: 3.6 Consensus size: 43
9599041 ATATCATACA
* * * **
9599051 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAATCACATGTTA
1 ATGCCAACGTCCCAGACATGGTCTTAC-TCGAAATCACATATCG
* * * *
9599094 ATGCC-ACTGTACCAGACAGGGTCTTACACG-AATCATAATAAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACTCGAAATCA-CAT-ATCG
* *
9599137 ATGCCGATGTCCCAGACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACTCGAAATCACATATCG
*
9599180 ATGCCAACGTCCCAGATATGGTCTTAC
1 ATGCCAACGTCCCAGACATGGTCTTAC
9599207 ATGAGAACAC
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
42 9 0.10
43 75 0.82
44 7 0.08
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACTCGAAATCACATATCG
Found at i:9600686 original size:37 final size:37
Alignment explanation
Indices: 9600627--9600728 Score: 159
Period size: 37 Copynumber: 2.8 Consensus size: 37
9600617 AGCTCAGACG
* * *
9600627 AAATCTCCACATGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
*
9600664 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
*
9600701 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
9600729 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
Found at i:9600932 original size:47 final size:47
Alignment explanation
Indices: 9600851--9601445 Score: 974
Period size: 47 Copynumber: 12.5 Consensus size: 47
9600841 TCGGGACTTG
* * * * * * *
9600851 TCACATTTATACACTTTCACATCCATCACGTCGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
9600898 TCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
9600945 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
9600992 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
9601039 TCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
9601088 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
9601135 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
9601182 TCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
9601229 TCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
9601278 TCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
9601325 TCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
9601374 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
9601421 TCACATATATATACACTTTCACATT
1 TCAC--ATATATACACTTTCACATT
9601446 GATTCAAATA
Statistics
Matches: 515, Mismatches: 25, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
47 362 0.70
49 153 0.30
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:9601081 original size:96 final size:96
Alignment explanation
Indices: 9600851--9601445 Score: 1013
Period size: 96 Copynumber: 6.3 Consensus size: 96
9600841 TCGGGACTTG
* * * * * * *
9600851 TCACAT-T-TATACACTTTCACATCCATCACGTCGGCCACTCGGCCCTGTCTCATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
9600914 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
9600945 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
9601008 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
*
9601039 TCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
9601104 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
* *
9601135 TCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAATT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
9601198 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
* * *
9601229 TCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAATT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
9601294 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
* *
9601325 TCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
9601390 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
9601421 TCACATATATATACACTTTCACATT
1 TCACATATATATACACTTTCACATT
9601446 GATTCAAATA
Statistics
Matches: 482, Mismatches: 13, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
93 1 0.00
94 181 0.38
96 300 0.62
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:9601107 original size:143 final size:141
Alignment explanation
Indices: 9600851--9601445 Score: 974
Period size: 143 Copynumber: 4.2 Consensus size: 141
9600841 TCGGGACTTG
* * * * * * * *
9600851 TCACATTTATACACTTTCACATCCATCACGTCGGCCACTCGGCCCTGTCTCATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
9600916 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
9600981 ATTAGGCCTTA
131 ATTAGGCCTTA
9600992 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
*
9601057 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
64 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
9601122 CCATTAGGCCTTA
129 CCATTAGGCCTTA
* *
9601135 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAATTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
*
9601200 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGG
*
9601265 CCATTCGGCCTTA
129 CCATTAGGCCTTA
*
9601278 TCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
* *
9601343 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
64 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
9601408 CCATTAGGCCTTA
129 CCATTAGGCCTTA
9601421 TCACATATATATACACTTTCACATT
1 TCAC--ATATATACACTTTCACATT
9601446 GATTCAAATA
Statistics
Matches: 424, Mismatches: 22, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
141 88 0.21
143 274 0.65
145 62 0.15
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTA
Found at i:9604718 original size:14 final size:15
Alignment explanation
Indices: 9604692--9604720 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9604682 AAAATTAATT
9604692 CATGAAAATTTCACA
1 CATGAAAATTTCACA
9604707 CATGAAAA-TTCACA
1 CATGAAAATTTCACA
9604721 AAAAATAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
CATGAAAATTTCACA
Found at i:9604735 original size:13 final size:13
Alignment explanation
Indices: 9604717--9604741 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9604707 CATGAAAATT
9604717 CACAAAAAATAAA
1 CACAAAAAATAAA
9604730 CACAAAAAATAA
1 CACAAAAAATAA
9604742 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (13 bp):
CACAAAAAATAAA
Found at i:9605521 original size:43 final size:42
Alignment explanation
Indices: 9605451--9605563 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 42
9605441 CAATGTCAAC
* * *
9605451 GTCCCAGAT-GTGGTCTTACATGTAATCAAATATCTATGTCAG-T
1 GTCCCAGATAG-GGTCTTACACGAAATCAAATA-CGATG-CAGAT
* *
9605494 GTCCCAGATAGGGTCTTACACGAAATCATATACGATGCCGAT
1 GTCCCAGATAGGGTCTTACACGAAATCAAATACGATGCAGAT
* *
9605536 GTCCCAGACATGGTCTTACACGTAAATC
1 GTCCCAGATAGGGTCTTACACG-AAATC
9605564 TCAAATCGAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.03
42 25 0.42
43 32 0.53
44 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (42 bp):
GTCCCAGATAGGGTCTTACACGAAATCAAATACGATGCAGAT
Found at i:9605551 original size:42 final size:43
Alignment explanation
Indices: 9605493--9605603 Score: 127
Period size: 44 Copynumber: 2.6 Consensus size: 43
9605483 TCTATGTCAG
* * * *
9605493 TGTCCCAGATAGGGTCTTACACGAAA--TCATATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCTCAAAT-CGATGCCAA
9605535 TGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGCCAA
1 TGTCCCAGACATGGTCTTACACG-AAATCTCAAATCGATGCCAA
** *
9605579 CATCCCAAACATGGTCTTACACGAA
1 TGTCCCAGACATGGTCTTACACGAA
9605604 GTCACATCTC
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 21 0.36
43 5 0.08
44 28 0.47
45 5 0.08
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGAAATCTCAAATCGATGCCAA
Found at i:9611127 original size:32 final size:32
Alignment explanation
Indices: 9611086--9611150 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
9611076 TAATACACCA
9611086 ATTCGACCATATCACACAGACTAATTTCAGTT
1 ATTCGACCATATCACACAGACTAATTTCAGTT
* *
9611118 ATTCGACCATATCACATAGACTAATTTTAGTT
1 ATTCGACCATATCACACAGACTAATTTCAGTT
9611150 A
1 A
9611151 ACATAATAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (32 bp):
ATTCGACCATATCACACAGACTAATTTCAGTT
Found at i:9612122 original size:43 final size:43
Alignment explanation
Indices: 9612063--9612164 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
9612053 TCCCAGACCT
*
9612063 GGTCTTACA--TATAATCAAATATCGATCCCACTGTCCCAAACAG
1 GGTCTTACACGTA-AATCAAATA-CGATCCCAATGTCCCAAACAG
* * * * *
9612106 GGTTTTACACG-AAATCATATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAAATCAAATACGATCCCAATGTCCCAAACAG
9612148 GGTCTTACACGTAAATC
1 GGTCTTACACGTAAATC
9612165 TCAAATCGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
42 27 0.55
43 21 0.43
44 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAAATACGATCCCAATGTCCCAAACAG
Found at i:9612156 original size:42 final size:43
Alignment explanation
Indices: 9612044--9612206 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
9612034 AGGTCGTACA
* * *
9612044 ATGCCAACGTCCCAGACCTGGTCTTACA-TATAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGA-AATCATATATCG
* * * *
9612087 AT-CCCACTGTCCCAAACAGGGTTTTACACGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCATATATCG
* *
9612129 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-TCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCAT-ATATCG
* * * *
9612173 ATGCCAACATCCCAGACGTGGCCTTACATGAAAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAT
9612207 TACATCTCTG
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
42 28 0.29
43 40 0.42
44 28 0.29
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATCG
Found at i:9623849 original size:30 final size:30
Alignment explanation
Indices: 9623813--9623873 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
9623803 CATTTAATAC
*
9623813 AAACTTTGGCAAAATTACATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
9623843 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
9623873 A
1 A
9623874 GGCTCGTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:9636885 original size:27 final size:27
Alignment explanation
Indices: 9636837--9636941 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
9636827 GCGAGGCTGC
* *
9636837 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
9636864 CAGATATTATGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
9636890 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
9636917 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
9636942 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 8 0.12
27 56 0.84
28 3 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:9643252 original size:24 final size:23
Alignment explanation
Indices: 9643167--9643258 Score: 87
Period size: 23 Copynumber: 4.0 Consensus size: 23
9643157 GAGTTGATGG
*
9643167 ACAGTAAGCTC-TATTGAGCTGAA
1 ACAGTAAGCTCTTA-CGAGCTGAA
* * *
9643190 GCGGTAAGCTCTAACGAGCTGAA
1 ACAGTAAGCTCTTACGAGCTGAA
*
9643213 ACAGTAAGCTCATACGAGCTGAGA
1 ACAGTAAGCTCTTACGAGCTGA-A
** *
9643237 GTAGTAAGCTTTTACGAGCTGA
1 ACAGTAAGCTCTTACGAGCTGA
9643259 TATATCGATA
Statistics
Matches: 55, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
23 35 0.64
24 20 0.36
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (23 bp):
ACAGTAAGCTCTTACGAGCTGAA
Found at i:9659691 original size:24 final size:24
Alignment explanation
Indices: 9659659--9659707 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
9659649 GACATAAGAG
9659659 TCAATATACTCCTTTTTGGTTATC
1 TCAATATACTCCTTTTTGGTTATC
9659683 TCAATATACTCCTTTTTGGTTATC
1 TCAATATACTCCTTTTTGGTTATC
9659707 T
1 T
9659708 TCATGGGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.51
Consensus pattern (24 bp):
TCAATATACTCCTTTTTGGTTATC
Found at i:9665961 original size:47 final size:47
Alignment explanation
Indices: 9665908--9666343 Score: 674
Period size: 47 Copynumber: 9.3 Consensus size: 47
9665898 ACAAGATATG
9665908 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
9665955 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
9666002 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
9666049 TATATGAGATAAGACCTAATGGCCAATGTGATAAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
9666096 TATATGTGATAAGGCCGGATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
9666143 TATATGTGACAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
9666190 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
** * * * * *
9666237 TATATGAAATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
9666284 TATATGTGATAAGGCCGAATGGCCAATATGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
9666331 TAAATGTGATAAG
1 TATATGTGATAAG
9666344 TCCCGAAGGG
Statistics
Matches: 350, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 350 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:9673297 original size:29 final size:29
Alignment explanation
Indices: 9673240--9673299 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
9673230 GTTATAACCA
* * *
9673240 AACCTTTACATGCCATTGTTGACCAAATT
1 AACCTATACATGCCATTGATAACCAAATT
9673269 AACCTATACATGCCATT-ATAACCATAATT
1 AACCTATACATGCCATTGATAACCA-AATT
9673298 AA
1 AA
9673300 TTTACCATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (29 bp):
AACCTATACATGCCATTGATAACCAAATT
Found at i:9675961 original size:11 final size:11
Alignment explanation
Indices: 9675945--9676010 Score: 53
Period size: 11 Copynumber: 5.7 Consensus size: 11
9675935 ATATTACATG
9675945 AAATAATAATA
1 AAATAATAATA
9675956 AAATAATAATA
1 AAATAATAATA
*
9675967 AAATTAAATTAAAA
1 AAA-T-AA-TAATA
*
9675981 AAATTAA-ATTA
1 AAA-TAATAATA
*
9675992 AAATATTAATA
1 AAATAATAATA
*
9676003 AACTAATA
1 AAATAATA
9676011 TTTATTTAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
10 2 0.05
11 28 0.64
12 1 0.02
13 4 0.09
14 9 0.20
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATAATAATA
Found at i:9675994 original size:13 final size:14
Alignment explanation
Indices: 9675966--9675994 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9675956 AAATAATAAT
9675966 AAAATTAAATTAAA
1 AAAATTAAATTAAA
9675980 AAAATTAAATTAAA
1 AAAATTAAATTAAA
9675994 A
1 A
9675995 TATTAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATTAAATTAAA
Found at i:9677823 original size:30 final size:30
Alignment explanation
Indices: 9677715--9677824 Score: 150
Period size: 30 Copynumber: 3.7 Consensus size: 30
9677705 TAAAGCCATT
* **
9677715 CATATCCCCACTAACT-TTCATTACGCCACC
1 CATATCCCCACTAACTCCT-ATTAAACCACC
* *
9677745 AATATCCCCACTAACTCCCATTAAACCACC
1 CATATCCCCACTAACTCCTATTAAACCACC
9677775 CATATCCCCACTAACTCCTATTAAACCACC
1 CATATCCCCACTAACTCCTATTAAACCACC
*
9677805 CATATCCCTACTAACTCCTA
1 CATATCCCCACTAACTCCTA
9677825 AATTTGATTA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
30 71 1.00
ACGTcount: A:0.32, C:0.43, G:0.01, T:0.25
Consensus pattern (30 bp):
CATATCCCCACTAACTCCTATTAAACCACC
Found at i:9691034 original size:27 final size:28
Alignment explanation
Indices: 9690999--9691060 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
9690989 GTTTACTAGG
9690999 CCCTCTATAT-GATAAAATGACTATTTTT
1 CCCTCTATATAG-TAAAATGACTATTTTT
* *
9691027 CCCT-TATATAGTAAGATGACTATTTTA
1 CCCTCTATATAGTAAAATGACTATTTTT
9691054 CCC-CTAT
1 CCCTCTAT
9691061 GTCTTGTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
27 25 0.83
28 5 0.17
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (28 bp):
CCCTCTATATAGTAAAATGACTATTTTT
Found at i:9695966 original size:78 final size:78
Alignment explanation
Indices: 9695831--9695982 Score: 207
Period size: 78 Copynumber: 1.9 Consensus size: 78
9695821 GATCTCAAAC
* *
9695831 ATCGCTAAATAATGAGTTGATGTTGCTCACTCAAGCTGTTAAGAATCCACAACTTATGTTAGATC
1 ATCGCTAAATAATGAATTGATGTTGCTCACTCAAGCTGTCAAGAATCCACAACTTATGTTAGATC
9695896 TCAACCATCACAG
66 TCAACCATCACAG
* * ** * *
9695909 ATCGCTAACTAAT-AATTCGATGTTGCTCACTCAAGCTGTCGAGAATCTGCAATTTATGTTGGAT
1 ATCGCTAAATAATGAATT-GATGTTGCTCACTCAAGCTGTCAAGAATCCACAACTTATGTTAGAT
*
9695973 CTTAACCATC
65 CTCAACCATC
9695983 GAGTAAATCT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
77 3 0.05
78 61 0.95
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (78 bp):
ATCGCTAAATAATGAATTGATGTTGCTCACTCAAGCTGTCAAGAATCCACAACTTATGTTAGATC
TCAACCATCACAG
Done.