Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 272 of 344
Found at i:90983302 original size:26 final size:26
Alignment explanation
Indices: 90983273--90983324 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
90983263 AAATGAAAAG
* * *
90983273 GGGGTTGTTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
90983299 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
90983325 TTCAGTGGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.15, C:0.19, G:0.35, T:0.31
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:90983311 original size:70 final size:72
Alignment explanation
Indices: 90983162--90983312 Score: 234
Period size: 72 Copynumber: 2.1 Consensus size: 72
90983152 TCATTGGTGG
* *
90983162 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
90983227 GAGGGGT
66 GAGGGGT
*** *
90983234 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGTTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
90983297 GAGGGGT
66 GAGGGGT
90983304 TGCTAAGTG
1 TGCTAAGTG
90983313 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
70 20 0.27
71 23 0.32
72 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:90990216 original size:30 final size:30
Alignment explanation
Indices: 90990158--90990218 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
90990148 ATTTCCGAGC
**
90990158 TTGGGGACAAAAGTGTAATTATGTAAAAGT
1 TTGGGGACAAAAGTGTAATTATCAAAAAGT
* * *
90990188 TTGGGGGCAAAATTGTAATTTTCAAAAAGT
1 TTGGGGACAAAAGTGTAATTATCAAAAAGT
90990218 T
1 T
90990219 GGGTGGTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (30 bp):
TTGGGGACAAAAGTGTAATTATCAAAAAGT
Found at i:90990661 original size:26 final size:26
Alignment explanation
Indices: 90990625--90990676 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
90990615 GAAATGTGAA
*
90990625 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
90990651 AGGGGTTGCTAAGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
90990677 GTTCATTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:90990725 original size:102 final size:103
Alignment explanation
Indices: 90990549--90990769 Score: 365
Period size: 102 Copynumber: 2.2 Consensus size: 103
90990539 TGTATATAAA
** * *
90990549 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
90990614 TGAAATGTGAAA-GGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
90990651 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
90990715 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
90990754 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
90990770 GATATCCATT
Statistics
Matches: 111, Mismatches: 6, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
102 69 0.62
103 42 0.38
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:90990822 original size:70 final size:71
Alignment explanation
Indices: 90990689--90990838 Score: 239
Period size: 70 Copynumber: 2.1 Consensus size: 71
90990679 TCATTGGTGG
* *
90990689 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
90990754 AGGGGT
66 AGGGGT
*** *
90990760 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGTTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
90990824 AGGGGT
66 AGGGGT
90990830 TGCTAAGTG
1 TGCTAAGTG
90990839 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
70 43 0.59
71 30 0.41
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
AGGGGT
Found at i:90990828 original size:26 final size:26
Alignment explanation
Indices: 90990799--90990850 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
90990789 AAATGAAAAG
* * *
90990799 GGGGTTGTTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
90990825 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
90990851 TTCAGTGGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.15, C:0.19, G:0.35, T:0.31
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:91001484 original size:25 final size:25
Alignment explanation
Indices: 91001437--91001496 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
91001427 NNNNNNNNNN
91001437 TTATTTTAAATTGTTTCATTATTAT
1 TTATTTTAAATTGTTTCATTATTAT
*
91001462 TTATTTTAAGTT-TTTCATATATTAT
1 TTATTTTAAATTGTTTCAT-TATTAT
*
91001487 GTATTTTAAA
1 TTATTTTAAA
91001497 CTATTATCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 6 0.19
25 25 0.81
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (25 bp):
TTATTTTAAATTGTTTCATTATTAT
Found at i:91001591 original size:21 final size:20
Alignment explanation
Indices: 91001555--91001602 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
91001545 TTATTTCGAA
91001555 TTATTTTTTATGTATATCT-T
1 TTATTTTTTATGTATAT-TAT
*
91001575 TTATTTTGTTTTGTATATTAT
1 TTATTTT-TTATGTATATTAT
91001596 TTATTTT
1 TTATTTT
91001603 AAATTTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.73
Consensus pattern (20 bp):
TTATTTTTTATGTATATTAT
Found at i:91001649 original size:22 final size:22
Alignment explanation
Indices: 91001624--91001673 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
91001614 TACATATTAT
* * *
91001624 TTATTTTAAACTCTTTTATATG
1 TTATTTTAAACTATTATATATA
*
91001646 TTATTTTAAAGTATTATATATA
1 TTATTTTAAACTATTATATATA
91001668 TTATTT
1 TTATTT
91001674 ATTTTAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATTTTAAACTATTATATATA
Found at i:91001675 original size:26 final size:25
Alignment explanation
Indices: 91001508--91001774 Score: 163
Period size: 26 Copynumber: 10.5 Consensus size: 25
91001498 TATTATCCAA
*
91001508 TTATATATATAGTTTATTTTAAACTA-
1 TTATATAT-TA-TTTATTTTAAATTAT
**
91001534 TTATATATTATTTATTTCGAATTAT
1 TTATATATTATTTATTTTAAATTAT
* * * ** *
91001559 TT-TTTATGTATATCTTTTATTTTGTT
1 TTATATAT-TATTTATTTTAAATT-AT
*
91001585 TTGTATATTATTTATTTTAAATTTATTT
1 TTATATATTATTTATTTTAAA-TTA--T
* * *
91001613 TTACATATTATTTATTTTAAACTCT
1 TTATATATTATTTATTTTAAATTAT
* *
91001638 TT-TATA-T-GTTATTTTAAAGTAT
1 TTATATATTATTTATTTTAAATTAT
91001660 TATATATATTATTTATTTTAAATTGCA-
1 T-TATATATTATTTATTTTAAATT--AT
* * *
91001687 TTGTATATTATTTATTTTAATTTTT
1 TTATATATTATTTATTTTAAATTAT
*
91001712 TTACT-TATTATTTATCTTAAATTAT
1 TTA-TATATTATTTATTTTAAATTAT
* * *
91001737 TT-TATCTTATTTACTTTAAATTGCT
1 TTATATATTATTTATTTTAAATT-AT
*
91001762 TTACATATTATTT
1 TTATATATTATTT
91001775 TGTTTCGTTT
Statistics
Matches: 183, Mismatches: 40, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
22 13 0.07
23 3 0.02
24 37 0.20
25 41 0.22
26 60 0.33
27 8 0.04
28 21 0.11
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.62
Consensus pattern (25 bp):
TTATATATTATTTATTTTAAATTAT
Found at i:91003963 original size:21 final size:21
Alignment explanation
Indices: 91003927--91004001 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 21
91003917 TCAATATCCA
*
91003927 AAAATAAATAATATAATAAAAT
1 AAAAT-AATAAAATAATAAAAT
91003949 AAAATAATAAAATAATAAAAT
1 AAAATAATAAAATAATAAAAT
*
91003970 AGTAA-AATAAAAT-ATAAAAT
1 A-AAATAATAAAATAATAAAAT
*
91003990 AAGAAAAATAAA
1 AA-AATAATAAA
91004002 TAAAAATAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
20 10 0.21
21 30 0.64
22 7 0.15
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (21 bp):
AAAATAATAAAATAATAAAAT
Found at i:91003978 original size:13 final size:13
Alignment explanation
Indices: 91003932--91004006 Score: 73
Period size: 13 Copynumber: 5.6 Consensus size: 13
91003922 ATCCAAAAAT
*
91003932 AAATAATATAATA
1 AAATAAAATAATA
91003945 AAATAAAATAATAAA
1 AAATAAAATAAT--A
*
91003960 ATAATAAAATAGTA
1 A-AATAAAATAATA
91003974 AAATAAAAT-ATA
1 AAATAAAATAATA
*
91003986 AAATAAGAAAAAT-
1 AAATAA-AATAATA
91003999 AAATAAAA
1 AAATAAAA
91004007 ATAAAGGTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
12 10 0.19
13 27 0.51
14 4 0.08
15 2 0.04
16 10 0.19
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
AAATAAAATAATA
Found at i:91003996 original size:8 final size:8
Alignment explanation
Indices: 91003932--91003979 Score: 60
Period size: 8 Copynumber: 5.8 Consensus size: 8
91003922 ATCCAAAAAT
91003932 AAATAATA
1 AAATAATA
*
91003940 TAATAAAATA
1 -AA-ATAATA
91003950 AAATAATA
1 AAATAATA
91003958 AAATAATA
1 AAATAATA
*
91003966 AAATAGTA
1 AAATAATA
91003974 AAATAA
1 AAATAA
91003980 AATATAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
8 25 0.74
9 4 0.12
10 5 0.15
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (8 bp):
AAATAATA
Found at i:91003997 original size:29 final size:29
Alignment explanation
Indices: 91003927--91003999 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
91003917 TCAATATCCA
* *
91003927 AAAATAAATAATATAATAAAATAAAATAAT
1 AAAATAAA-AAAATAGTAAAATAAAATAAT
*
91003957 AAAATAATAAAATAGTAAAATAAAAT-AT
1 AAAATAAAAAAATAGTAAAATAAAATAAT
91003985 AAAATAAGAAAAATA
1 AAAATAA-AAAAATA
91004000 AATAAAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 9 0.24
29 22 0.58
30 7 0.18
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (29 bp):
AAAATAAAAAAATAGTAAAATAAAATAAT
Found at i:91014113 original size:19 final size:20
Alignment explanation
Indices: 91014089--91014126 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91014079 GGTACCACCA
91014089 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
91014108 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
91014127 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:91014470 original size:47 final size:43
Alignment explanation
Indices: 91014402--91014522 Score: 147
Period size: 42 Copynumber: 2.7 Consensus size: 43
91014392 ATCCATAAAT
*
91014402 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG---CA--TAAGC
* * *
91014449 GAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATAAGC
91014491 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
91014523 TCAACCATCC
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
41 2 0.03
42 30 0.45
43 2 0.03
46 3 0.04
47 30 0.45
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (43 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATAAGC
Found at i:91014495 original size:42 final size:43
Alignment explanation
Indices: 91014351--91014524 Score: 181
Period size: 46 Copynumber: 3.9 Consensus size: 43
91014341 AACCCGCCCC
* * *
91014351 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCG--T-CA
* * *
91014397 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG-T-CA
* *
91014443 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCG-CA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGTCA
*
91014486 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
91014525 AACCATCCTA
Statistics
Matches: 109, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.02
42 33 0.30
43 2 0.02
46 38 0.35
47 32 0.29
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (43 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGTCA
Found at i:91014513 original size:89 final size:90
Alignment explanation
Indices: 91014356--91014522 Score: 264
Period size: 89 Copynumber: 1.8 Consensus size: 90
91014346 GCCCCTAAGT
* *
91014356 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCG---CCATAAATGAACTCGGACTCAACTCAA
91014421 CGAGTTCGGATGCCTAGTTACATCTCAC
63 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
91014449 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCG-CATAAGTGAACTCGGACTCAACTCAACGA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCCATAAATGAACTCGGACTCAACTCAACGA
91014513 GTTCGGATGC
66 GTTCGGATGC
91014523 TCAACCATCC
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
89 38 0.54
93 32 0.46
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (90 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCCATAAATGAACTCGGACTCAACTCAACGA
GTTCGGATGCCTAGTTACATCTCAC
Found at i:91015859 original size:14 final size:14
Alignment explanation
Indices: 91015842--91015895 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
91015832 ATTCTAAAAG
91015842 ATAAATATAATTAA
1 ATAAATATAATTAA
*
91015856 ATAAAGATAATTAA
1 ATAAATATAATTAA
* * *
91015870 AGAAAAATAAGGATAA
1 ATAAATATAA--TTAA
91015886 ATAAATATAA
1 ATAAATATAA
91015896 AAACTAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 21 0.66
16 11 0.34
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (14 bp):
ATAAATATAATTAA
Found at i:91015870 original size:10 final size:10
Alignment explanation
Indices: 91015838--91015896 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
91015828 TTAAATTCTA
91015838 AAAGATAAAT
1 AAAGATAAAT
*
91015848 ATAA-TTAAAT
1 A-AAGATAAAT
*
91015858 AAAGATAATT
1 AAAGATAAAT
*
91015868 AAAGAAAAAT
1 AAAGATAAAT
*
91015878 AAGGATAAAT
1 AAAGATAAAT
*
91015888 AAATATAAA
1 AAAGATAAA
91015897 AACTAAAATT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
9 2 0.05
10 34 0.89
11 2 0.05
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:91015947 original size:14 final size:13
Alignment explanation
Indices: 91015911--91015947 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
91015901 AAAATTAAAT
91015911 CTAAATAATTATC
1 CTAAATAATTATC
*
91015924 CTTAATAATTATC
1 CTAAATAATTATC
91015937 CTAATATAATT
1 CTAA-ATAATT
91015948 GGAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:91019162 original size:87 final size:87
Alignment explanation
Indices: 91019036--91019196 Score: 286
Period size: 87 Copynumber: 1.9 Consensus size: 87
91019026 TCATATTTCC
* **
91019036 TTTAAGCAAATATATATAGCAATATTTTGTACTAACATCAATGAAGGTAATAAAATATTTATTTT
1 TTTAAGCAAATATACATAGCAATATTTTGTACTAACATCAATGAAGGTAATAAAATATTTATTCC
91019101 CTCCTCTAGCTTCACCTTTGCT
66 CTCCTCTAGCTTCACCTTTGCT
*
91019123 TTTAAGCAAATATACATAGCAATATTTTGTACTATCATCAATGAAGGTAATAAAATATTTATTCC
1 TTTAAGCAAATATACATAGCAATATTTTGTACTAACATCAATGAAGGTAATAAAATATTTATTCC
91019188 CTCCTCTAG
66 CTCCTCTAG
91019197 TTTGAATAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (87 bp):
TTTAAGCAAATATACATAGCAATATTTTGTACTAACATCAATGAAGGTAATAAAATATTTATTCC
CTCCTCTAGCTTCACCTTTGCT
Found at i:91022596 original size:14 final size:14
Alignment explanation
Indices: 91022572--91022608 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
91022562 ATAATTTTTA
91022572 AATTT-AAATAAAT
1 AATTTAAAATAAAT
91022585 AATTTAAAATAAAT
1 AATTTAAAATAAAT
*
91022599 -TTTTAAAATA
1 AATTTAAAATA
91022609 TATAGACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 14 0.64
14 8 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTAAAATAAAT
Found at i:91022900 original size:26 final size:25
Alignment explanation
Indices: 91022851--91022900 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
91022841 TTTCTACAAA
*
91022851 TTTTTATACAAATTTAAGTTATATC
1 TTTTTATACAAATTTAAGTAATATC
91022876 TTTTTATACAAACTTATAA-TAATAT
1 TTTTTATACAAA-TT-TAAGTAATAT
91022901 TAAATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 12 0.55
26 7 0.32
27 3 0.14
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (25 bp):
TTTTTATACAAATTTAAGTAATATC
Found at i:91027049 original size:19 final size:18
Alignment explanation
Indices: 91027001--91027049 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
91026991 AAATAATAAT
91027001 AAATTATTAAAATTTATA
1 AAATTATTAAAATTTATA
*
91027019 AAGAATATTAAAA-TTACTA
1 AA-ATTATTAAAATTTA-TA
91027038 AAATTATATAAA
1 AAATTAT-TAAA
91027050 CATATAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAATTATTAAAATTTATA
Found at i:91027054 original size:28 final size:27
Alignment explanation
Indices: 91026849--91027067 Score: 80
Period size: 28 Copynumber: 7.9 Consensus size: 27
91026839 AAAAAAACTT
* * *
91026849 TAAAAAATATAAAAAATATTAAAATTGA
1 TAAAGAATATAAAAATTA-TAAAATTTA
* *
91026877 TATA-AAT-TTAAAATTATAAAA--TA
1 TAAAGAATATAAAAATTATAAAATTTA
*
91026900 TAAA-AATCTAATAAATTATACAAGAATTTA
1 TAAAGAATATAA-AAATTAT--AA-AATTTA
* *
91026930 TAAA-ATTAATAAAACTTATTTAAAATATT-
1 TAAAGAAT-ATAAAAATTA--TAAAAT-TTA
* * *
91026959 TAAA-ATTAGAAAAATGTATTATAATTCT-
1 TAAAGAATATAAAAAT-TA-TAAAATT-TA
*
91026987 TAAAAAATAATAATAAATTATTAAAATTTA
1 TAAAGAAT-ATAA-AAATTA-TAAAATTTA
*
91027017 TAAAGAATATTAAAATTACTAAAATTATA
1 TAAAGAATATAAAAATTA-TAAAATT-TA
* *
91027046 TAAA-CATATAAAAAGTATAAAA
1 TAAAGAATATAAAAATTATAAAA
91027068 AAAACATAAA
Statistics
Matches: 152, Mismatches: 21, Indels: 37
0.72 0.10 0.18
Matches are distributed among these distances:
23 7 0.05
24 2 0.01
25 12 0.08
26 7 0.05
27 11 0.07
28 45 0.30
29 24 0.16
30 36 0.24
31 7 0.05
32 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (27 bp):
TAAAGAATATAAAAATTATAAAATTTA
Found at i:91027487 original size:8 final size:8
Alignment explanation
Indices: 91027474--91027566 Score: 57
Period size: 9 Copynumber: 10.8 Consensus size: 8
91027464 GTTTTGTTAA
91027474 TTTTATAT
1 TTTTATAT
91027482 TTTTATAT
1 TTTTATAT
91027490 CAATTTTCAT-T
1 ---TTTT-ATAT
91027501 TTTTA-AT
1 TTTTATAT
91027508 TTTTAATAT
1 TTTT-ATAT
91027517 TTTT-TAT
1 TTTTATAT
*
91027524 TTTTCTAAT
1 TTTTAT-AT
91027533 TTTCTATATT
1 TTT-TATA-T
*
91027543 TTTTCTTAT
1 TTTT-ATAT
91027552 TTTTAATAT
1 TTTT-ATAT
91027561 TTTTAT
1 TTTTAT
91027567 GGAAAAATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 24
0.71 0.04 0.25
Matches are distributed among these distances:
7 13 0.19
8 16 0.23
9 25 0.36
10 8 0.12
11 5 0.07
12 2 0.03
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTTATAT
Found at i:91027510 original size:25 final size:24
Alignment explanation
Indices: 91027474--91027535 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 24
91027464 GTTTTGTTAA
91027474 TTTTATATTTTTATATCAATTTTCATT
1 TTTTA-ATTTTTA-AT-AATTTTCATT
* *
91027501 TTTTAATTTTTAATATTTTTTATT
1 TTTTAATTTTTAATAATTTTCATT
91027525 TTTCTAATTTT
1 TTT-TAATTTT
91027536 CTATATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 11 0.34
25 9 0.28
26 7 0.22
27 5 0.16
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (24 bp):
TTTTAATTTTTAATAATTTTCATT
Found at i:91027541 original size:25 final size:24
Alignment explanation
Indices: 91027504--91027565 Score: 61
Period size: 28 Copynumber: 2.4 Consensus size: 24
91027494 TTTCATTTTT
91027504 TAATTTTTAATATTTTTTATTTTT
1 TAATTTTTAATATTTTTTATTTTT
*
91027528 CTAATTTTCTATATTTTTTCTTATTTTT
1 -TAATTTT-TA-ATATTTT-TTATTTTT
*
91027556 AATATTTTTA
1 TA-ATTTTTA
91027566 TGGAAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 7 0.23
26 2 0.06
27 9 0.29
28 13 0.42
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (24 bp):
TAATTTTTAATATTTTTTATTTTT
Found at i:91027547 original size:19 final size:19
Alignment explanation
Indices: 91027523--91027564 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
91027513 ATATTTTTTA
91027523 TTTTTCTAATTTTCT-ATAT
1 TTTTTCTAATTTT-TAATAT
*
91027542 TTTTTCTTATTTTTAATAT
1 TTTTTCTAATTTTTAATAT
91027561 TTTT
1 TTTT
91027565 ATGGAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTTCTAATTTTTAATAT
Found at i:91034667 original size:27 final size:26
Alignment explanation
Indices: 91034627--91034738 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
91034617 AGGAAGCGTC
* *
91034627 CTGGCGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
91034654 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
91034681 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
91034709 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
91034735 CTGG
1 CTGG
91034739 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.68
28 16 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:91041040 original size:24 final size:24
Alignment explanation
Indices: 91040995--91041045 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
91040985 AAGTCTGTCA
***
91040995 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAACAGATAAG
91041019 GGATAGGATTTAGGAACAGATAAG
1 GGATAGGATTTAGGAACAGATAAG
91041043 GGA
1 GGA
91041046 GGAAATCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.37, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAACAGATAAG
Found at i:91042529 original size:27 final size:25
Alignment explanation
Indices: 91042476--91042571 Score: 106
Period size: 27 Copynumber: 3.7 Consensus size: 25
91042466 GGCGGCTATT
*
91042476 CCACAATTATCTGAT-TGGTGGCTCTG
1 CCAC-ATTATCTGTTCTGGTGG-TCTG
91042502 CCACATATATCTGTTCTGGTGGTTCTG
1 CCACAT-TATCTGTTCTGGTGG-TCTG
*
91042529 CCACATTATCTGTATCTGGT-GACTG
1 CCACATTATCTGT-TCTGGTGGTCTG
*
91042554 TCACATTATCTGTTCTGG
1 CCACATTATCTGTTCTGG
91042572 CAGCCATGCT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.08
25 17 0.27
26 19 0.30
27 22 0.35
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.39
Consensus pattern (25 bp):
CCACATTATCTGTTCTGGTGGTCTG
Found at i:91049116 original size:20 final size:20
Alignment explanation
Indices: 91049093--91049150 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
91049083 CTTCTTTCTC
91049093 CTTTTCTTTCCTTTTTCTTT
1 CTTTTCTTTCCTTTTTCTTT
* * * *
91049113 CTTTCCTTCCCTGTTTCATT
1 CTTTTCTTTCCTTTTTCTTT
*
91049133 C-TATCTTTCTCTTTTTCT
1 CTTTTCTTTC-CTTTTTCT
91049151 ATTTCCATTT
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
19 5 0.18
20 23 0.82
ACGTcount: A:0.03, C:0.29, G:0.02, T:0.66
Consensus pattern (20 bp):
CTTTTCTTTCCTTTTTCTTT
Found at i:91049190 original size:5 final size:5
Alignment explanation
Indices: 91049180--91049288 Score: 218
Period size: 5 Copynumber: 21.8 Consensus size: 5
91049170 TTTGTATTAT
91049180 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
91049230 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
91049280 TATAA TATA
1 TATAA TATA
91049289 TTTACTTAAA
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 104 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:91062276 original size:46 final size:46
Alignment explanation
Indices: 91062112--91062277 Score: 146
Period size: 46 Copynumber: 3.6 Consensus size: 46
91062102 AAGCTGACGC
* *
91062112 CATGT-CTGAGACAGGTCTTACACT--AGCTCGTATATCTCGAGGCCGATG
1 CATGTCCT-AGACATGTCTTACACTGGAGCTC-TA-ATCT--AGGTCGATG
* * *
91062160 TATGTCCTAGACATGTCTTACACT--AGCTCTAGTCTCAATGTCGATG
1 CATGTCCTAGACATGTCTTACACTGGAGCTCTAATCT--AGGTCGATG
** *
91062206 CATGTCCCGGACATGTCTTACACTGGATCTCATAATCT-GGTCGATG
1 CATGTCCTAGACATGTCTTACACTGGAGCTC-TAATCTAGGTCGATG
91062252 CATGTCCTAGACATGTCTTACACTGG
1 CATGTCCTAGACATGTCTTACACTGG
91062278 TACACATACC
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
46 63 0.63
47 2 0.02
48 28 0.28
49 7 0.07
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTGGAGCTCTAATCTAGGTCGATG
Found at i:91065138 original size:92 final size:93
Alignment explanation
Indices: 91065026--91065224 Score: 346
Period size: 92 Copynumber: 2.2 Consensus size: 93
91065016 TGAGACTTAC
* *
91065026 CCTGGACTGGTAATCCTAATTGACTGGATTTAGCTTGGATTGGTAATCCAGATATGACTCTATAG
1 CCTGGACTGGTAATCCTAATTGACTGGATTTAGCCTGGATTGGTAATCCAGATATGACGCTATAG
*
91065091 G-GATTCTTTGTCTTATAAAGGATTTAG
66 GTAATTCTTTGTCTTATAAAGGATTTAG
*
91065118 CCTGGACTGGTAATCCTAATTGACTGGATTTAGCCTGGATTGGTAATCCATATATGACGCTATAG
1 CCTGGACTGGTAATCCTAATTGACTGGATTTAGCCTGGATTGGTAATCCAGATATGACGCTATAG
91065183 GTAATTCTTTGTCTTATAAAGGATTTAG
66 GTAATTCTTTGTCTTATAAAGGATTTAG
*
91065211 CCTGGACTAGTAAT
1 CCTGGACTGGTAAT
91065225 TCGACAAAGC
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 63 0.62
93 38 0.38
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (93 bp):
CCTGGACTGGTAATCCTAATTGACTGGATTTAGCCTGGATTGGTAATCCAGATATGACGCTATAG
GTAATTCTTTGTCTTATAAAGGATTTAG
Found at i:91068693 original size:18 final size:19
Alignment explanation
Indices: 91068650--91068695 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
91068640 GGTTTTCTCC
*
91068650 AAAATGAAAATGACAATTGT
1 AAAATGAAAATGA-AATTGA
*
91068670 AAAATGAAAATG-ATTTGA
1 AAAATGAAAATGAAATTGA
91068688 AAAATGAA
1 AAAATGAA
91068696 TTTATGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 12 0.50
20 12 0.50
ACGTcount: A:0.59, C:0.02, G:0.15, T:0.24
Consensus pattern (19 bp):
AAAATGAAAATGAAATTGA
Found at i:91069393 original size:272 final size:272
Alignment explanation
Indices: 91068901--91069452 Score: 827
Period size: 272 Copynumber: 2.0 Consensus size: 272
91068891 ATAGAAAAAT
*
91068901 AAATATTGGGTTGGATCAAATTATAAAGTATTGGATTAAAAGCCAAAGAATTACTTGTAATCAGA
1 AAATATTGGGTTGGATCAAATTATAAAGTATTGGATTAAAAGCCAAAGAAGTACTTGTAATCAGA
* *
91068966 CCCGATAGGGAAGAAGCCTAAAAGTCCATTATGTTATAAGGTGGGATAACAAATCATAGTATCAT
66 CCCGATAGGGAAGAAGCCTAAAAGCCCATTATGTTATAAGGTGGGACAACAAATCATAGTATCAT
* ** *
91069031 TAACTAAAGTTGTTGCCGCCTACATCCTAGTTGAACTAAGGTTTCACTATTCTAGTTAAAATGAA
131 TAACTAAAGTTGTCGCCGCCTACATCCTAGTTGAACTAACATTTCACTATTCTAGTTAAAATAAA
91069096 CTCCTATAATTAAACAAAAGTTCTACATTCTCTCCTTAAAAATAGATGGCACCAGAAAGGCTATT
196 CTCCTATAATTAAACAAAAGTTCTACATTCTCTCCTTAAAAATAGATGGCACCAGAAAGGCTATT
91069161 TACACAACTTTA
261 TACACAACTTTA
* ** *
91069173 AAATATTGGGTTGGATCAAATTATAAAGTATTGGATTGAAAGCCCGAGAAGTACTTGTAATTAGA
1 AAATATTGGGTTGGATCAAATTATAAAGTATTGGATTAAAAGCCAAAGAAGTACTTGTAATCAGA
** * *
91069238 CTTGATAGGGAATAAGCCTAAAAGCCCCTTATGTTATAAGGTGGGACAACAAATCATAGTATCAT
66 CCCGATAGGGAAGAAGCCTAAAAGCCCATTATGTTATAAGGTGGGACAACAAATCATAGTATCAT
* * *** *
91069303 TAACTAAGGTTGTCG-CTCCTACATCCTAGTTGAACTAACATTTTGTTTTTCTAGTTAAAATAAA
131 TAACTAAAGTTGTCGCCGCCTACATCCTAGTTGAACTAACATTTCACTATTCTAGTTAAAATAAA
** * ** * * *
91069367 CTTTTTATAATTAAATAAGGGTTCTACATTCTCTCCTTATAAATAGATGGCACCAGTAGGGCTAT
196 C-TCCTATAATTAAACAAAAGTTCTACATTCTCTCCTTAAAAATAGATGGCACCAGAAAGGCTAT
91069432 TTACACAACTTTA
260 TTACACAACTTTA
91069445 AAATATTG
1 AAATATTG
91069453 TTACTCTGCT
Statistics
Matches: 250, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
271 42 0.17
272 208 0.83
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (272 bp):
AAATATTGGGTTGGATCAAATTATAAAGTATTGGATTAAAAGCCAAAGAAGTACTTGTAATCAGA
CCCGATAGGGAAGAAGCCTAAAAGCCCATTATGTTATAAGGTGGGACAACAAATCATAGTATCAT
TAACTAAAGTTGTCGCCGCCTACATCCTAGTTGAACTAACATTTCACTATTCTAGTTAAAATAAA
CTCCTATAATTAAACAAAAGTTCTACATTCTCTCCTTAAAAATAGATGGCACCAGAAAGGCTATT
TACACAACTTTA
Found at i:91079062 original size:49 final size:50
Alignment explanation
Indices: 91079000--91079136 Score: 177
Period size: 49 Copynumber: 2.7 Consensus size: 50
91078990 TATTGTGAGG
* * * *
91079000 TCACGTGTGTAGTACTAAGTGTACGCTACTACGTGTACCGGATAA-TCGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAACTCGA
* * * *
91079049 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAC-TCGA
*
91079100 TCACATGTGTAGTACTAAGTACAGGCTACTACGTGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA
91079137 TCAAATGGTT
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 38 0.51
51 36 0.49
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAACTCGA
Found at i:91079119 original size:51 final size:49
Alignment explanation
Indices: 91079000--91079233 Score: 173
Period size: 49 Copynumber: 4.9 Consensus size: 49
91078990 TATTGTGAGG
* * * * *
91079000 TCACGTGTGTAGTACTAAGTGTACGCTACTACGTGTACCGGATAATCGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATCGA
* * *
91079049 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA--TCGA
* * * *
91079100 TCACATGTGTAGTACTAAGTACAGGCTACTACGTGTATC--A-AAT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATCGA
* * * * *
91079145 T--TA-G-GTCACGT-GT-AGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACATGTGT-A-GTACTAAGTGCAGGCTACTACGCGTACCGGATAATCGA
* * * *
91079190 TCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATA
91079234 GCTTCGGCTA
Statistics
Matches: 147, Mismatches: 24, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
41 22 0.15
42 3 0.02
43 4 0.03
44 3 0.02
45 5 0.03
46 1 0.01
47 3 0.02
48 4 0.03
49 65 0.44
51 37 0.25
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (49 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATCGA
Found at i:91080765 original size:40 final size:40
Alignment explanation
Indices: 91080687--91080910 Score: 283
Period size: 40 Copynumber: 5.5 Consensus size: 40
91080677 ACCCAAGTAT
* * *
91080687 CTTCGGGATTTAG-CCGGATATA-ACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
91080726 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
91080766 CTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
91080806 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
91080849 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
91080889 CTTCGAGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
91080911 CATCCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.07
40 113 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:91080883 original size:83 final size:79
Alignment explanation
Indices: 91080687--91080910 Score: 281
Period size: 83 Copynumber: 2.8 Consensus size: 79
91080677 ACCCAAGTAT
* * * *
91080687 CTTCGGGATTTAG-CCGGATATAACTACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATAT-AGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
91080751 CACTAGCATGAATGC
65 CACTAGCACAAATGC
* *
91080766 CTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
91080830 CAACTACTCGCACAAATGC
65 C-ACTA---GCACAAATGC
* *
91080849 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGAGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
91080911 CATCCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
79 15 0.12
80 46 0.37
83 65 0.52
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:91094397 original size:36 final size:36
Alignment explanation
Indices: 91094355--91094423 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
91094345 TTCGCCATAG
*
91094355 TTCGATCAAGATCCATTACTATAAGAAAACATAATA
1 TTCGATCAAGATCCATTACTACAAGAAAACATAATA
*
91094391 TTCGATCAGGATCCATTACTACAAGAAAACATA
1 TTCGATCAAGATCCATTACTACAAGAAAACATA
91094424 GTAATAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (36 bp):
TTCGATCAAGATCCATTACTACAAGAAAACATAATA
Found at i:91100361 original size:25 final size:24
Alignment explanation
Indices: 91100307--91100361 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
91100297 TTTTTTTAAG
*
91100307 CAAAATTTTATAACATTATTTTAT
1 CAAAATTTTATAACATTATCTTAT
* *
91100331 CTAAATTTTATAACAATTCTCTTAT
1 CAAAATTTTATAAC-ATTATCTTAT
*
91100356 GAAAAT
1 CAAAAT
91100362 AAACCAAGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.45
Consensus pattern (24 bp):
CAAAATTTTATAACATTATCTTAT
Found at i:91104089 original size:11 final size:11
Alignment explanation
Indices: 91104015--91104089 Score: 50
Period size: 11 Copynumber: 6.7 Consensus size: 11
91104005 ATTTCAAAAA
*
91104015 AATATTATTTT
1 AATATTAATTT
91104026 AATAGTTTAATATT
1 AATA--TTAAT-TT
91104040 AA-ATTAAATTT
1 AATATT-AATTT
*
91104051 AATATTTATCTT
1 AATATTAAT-TT
*
91104063 AATAGT-ATTT
1 AATATTAATTT
91104073 --TATTAATTT
1 AATATTAATTT
91104082 AATATTAA
1 AATATTAA
91104090 AATGATTAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 18
0.70 0.05 0.25
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 20 0.39
12 13 0.25
13 5 0.10
14 4 0.08
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (11 bp):
AATATTAATTT
Found at i:91108184 original size:37 final size:36
Alignment explanation
Indices: 91108138--91108245 Score: 116
Period size: 37 Copynumber: 2.9 Consensus size: 36
91108128 ATTCCAAAAA
91108138 TAATATTATTTTAATAGTTTAATATTACATTTAAT-T
1 TAATATTATTTTAATAGTTTAATATTA-ATTTAATAT
*
91108174 TAATACTTATTTTAATAGTATT-TTATTAATTTAATAT
1 TAATA-TTATTTTAATAGT-TTAATATTAATTTAATAT
*
91108211 TAAAGTGATTATCTTAATA-TTTAAT-TTAATTTAAT
1 T-AA-T-ATTATTTTAATAGTTTAATATTAATTTAAT
91108246 GTTTATCTTG
Statistics
Matches: 62, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
36 12 0.19
37 32 0.52
38 6 0.10
39 11 0.18
40 1 0.02
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.55
Consensus pattern (36 bp):
TAATATTATTTTAATAGTTTAATATTAATTTAATAT
Found at i:91108211 original size:11 final size:11
Alignment explanation
Indices: 91108138--91108213 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
91108128 ATTCCAAAAA
*
91108138 TAATATTATTT
1 TAATATTAATT
91108149 TAATAGTTTAATAT
1 TAATA--TTAAT-T
91108163 TACAT-TTAATT
1 TA-ATATTAATT
*
91108174 TAATACTTATTT
1 TAATA-TTAATT
*
91108186 TAATAGT-ATT
1 TAATATTAATT
91108196 T--TATTAATT
1 TAATATTAATT
91108205 TAATATTAA
1 TAATATTAA
91108214 AGTGATTATC
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 5 0.10
11 15 0.29
12 15 0.29
13 4 0.08
14 3 0.06
15 2 0.04
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:91110314 original size:74 final size:74
Alignment explanation
Indices: 91110227--91110445 Score: 329
Period size: 74 Copynumber: 3.0 Consensus size: 74
91110217 AAAGTAATAC
* * *
91110227 TGAGATGCCTTTATTGGTCCTTTGTCATAAAGTTGTGTAACAATTATTATTATTTAAATCATCTT
1 TGAGATGCCTTTATTGGTCCTTTATCATATAGTTGTGTTACAATTATTATTATTTAAATCATCTT
91110292 GTCTTGTCT
66 GTCTTGTCT
* * * * *
91110301 TGAGATGTCTTTATTGGTCCTTTATCATGTAGTTGTGTTACAGTTATTGTAATTTAAATCATCTT
1 TGAGATGCCTTTATTGGTCCTTTATCATATAGTTGTGTTACAATTATTATTATTTAAATCATCTT
91110366 GTCTTGTCT
66 GTCTTGTCT
*
91110375 TGAGATGCCTTTATTGGTCCTTTATCACATAGTTGTGTTAC-A--ATTATTATTTAAATCATCTT
1 TGAGATGCCTTTATTGGTCCTTTATCATATAGTTGTGTTACAATTATTATTATTTAAATCATCTT
91110437 GTCTT-TCT
66 GTCTTGTCT
91110445 T
1 T
91110446 AAGGCTAAGA
Statistics
Matches: 131, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
70 4 0.03
71 23 0.18
74 104 0.79
ACGTcount: A:0.22, C:0.14, G:0.15, T:0.49
Consensus pattern (74 bp):
TGAGATGCCTTTATTGGTCCTTTATCATATAGTTGTGTTACAATTATTATTATTTAAATCATCTT
GTCTTGTCT
Found at i:91111017 original size:15 final size:15
Alignment explanation
Indices: 91110994--91111027 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
91110984 CCGGCTTCGA
*
91110994 TTTTCCTTTTTTCTT
1 TTTTCCTTTTTTATT
*
91111009 TTTTTCTTTTTTATT
1 TTTTCCTTTTTTATT
91111024 TTTT
1 TTTT
91111028 ATTTTTGCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTCCTTTTTTATT
Found at i:91112015 original size:26 final size:26
Alignment explanation
Indices: 91111985--91112036 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
91111975 AAATTAGTTT
91111985 TTATAACTTTAATGTAATCATACTTC
1 TTATAACTTTAATGTAATCATACTTC
91112011 TTATAACTTTAATGTAATCATACTTC
1 TTATAACTTTAATGTAATCATACTTC
91112037 CGAATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (26 bp):
TTATAACTTTAATGTAATCATACTTC
Found at i:91114297 original size:26 final size:27
Alignment explanation
Indices: 91114260--91114313 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
91114250 GTTACTCAAG
*
91114260 CTGTTGTTGATTGCCTTCTAGAG-CTT
1 CTGTTGTCGATTGCCTTCTAGAGTCTT
*
91114286 CTGTTGTCGATTGTCTTCTAGAGTCTT
1 CTGTTGTCGATTGCCTTCTAGAGTCTT
91114313 C
1 C
91114314 AATTGAAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.46
Consensus pattern (27 bp):
CTGTTGTCGATTGCCTTCTAGAGTCTT
Found at i:91126040 original size:17 final size:19
Alignment explanation
Indices: 91126020--91126057 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91126010 CAGGGGAAGG
91126020 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
91126037 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
91126056 AA
1 AA
91126058 TTTAAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:91141857 original size:22 final size:22
Alignment explanation
Indices: 91141832--91141873 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
91141822 CCATATGGTA
91141832 TTGGCTAATATTGGTTAAGTTG
1 TTGGCTAATATTGGTTAAGTTG
91141854 TTGGCTAATATTGGTTAAGT
1 TTGGCTAATATTGGTTAAGT
91141874 ATATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.05, G:0.26, T:0.45
Consensus pattern (22 bp):
TTGGCTAATATTGGTTAAGTTG
Found at i:91154055 original size:23 final size:24
Alignment explanation
Indices: 91154028--91154082 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
91154018 AAATATAAAA
*
91154028 AAATAAGAAAATA-AGAATTTTTT
1 AAATAAAAAAATACAGAATTTTTT
* **
91154051 AAATAAAAAAATACATAATTTTCA
1 AAATAAAAAAATACAGAATTTTTT
91154075 AAATAAAA
1 AAATAAAA
91154083 GTTTTACGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (24 bp):
AAATAAAAAAATACAGAATTTTTT
Found at i:91159401 original size:49 final size:49
Alignment explanation
Indices: 91159342--91159472 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 49
91159332 TGTTGTGTGT
* *
91159342 CAATGTAAGACCTGTCTGGGACATGGCATCGACACT-GTTAGATGAGAGC
1 CAATGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
** * * *
91159391 CAATGTAAGACCTGTCTGGGACATGAAATCGGCCTCGATATATGAAAGT
1 CAATGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* *
91159440 CAGA-GTAAGACCTGTTTGGAACATGGCATCGAC
1 CA-ATGTAAGACCTGTCTGGGACATGGCATCGAC
91159473 TTTAATGTGC
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 2 0.03
49 65 0.96
50 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (49 bp):
CAATGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:91160729 original size:21 final size:20
Alignment explanation
Indices: 91160697--91160736 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
91160687 GTCATAATGG
91160697 CCACAAGAACGTGTTGCCTTT
1 CCACAAGAACGTG-TGCCTTT
91160718 CCACACAG-ACGTGTGCCTT
1 CCACA-AGAACGTGTGCCTT
91160737 GCTTCAAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 10 0.56
22 2 0.11
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.25
Consensus pattern (20 bp):
CCACAAGAACGTGTGCCTTT
Found at i:91164413 original size:23 final size:23
Alignment explanation
Indices: 91164387--91164443 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
91164377 TGTATATATT
91164387 ACATCAAATTAATTATAATTTAA
1 ACATCAAATTAATTATAATTTAA
91164410 ACATCAAATTAATTATAATTTAA
1 ACATCAAATTAATTATAATTTAA
*
91164433 ACATGAAATTA
1 ACATCAAATTA
91164444 CAAATTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.37
Consensus pattern (23 bp):
ACATCAAATTAATTATAATTTAA
Found at i:91167171 original size:34 final size:34
Alignment explanation
Indices: 91167126--91167190 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
91167116 ATTAAACTAG
* * *
91167126 AAATTATAATACAGTTATGTTAAAAA-TAATATAA
1 AAATAATAATACA-TAATATTAAAAACTAATATAA
91167160 AAATAATAATACATAATATTAAAAACTAATA
1 AAATAATAATACATAATATTAAAAACTAATA
91167191 ATACAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 10 0.37
34 17 0.63
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (34 bp):
AAATAATAATACATAATATTAAAAACTAATATAA
Found at i:91167189 original size:23 final size:21
Alignment explanation
Indices: 91167151--91167195 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 21
91167141 TATGTTAAAA
91167151 ATAATATAAAAATAATAATAC
1 ATAATATAAAAATAATAATAC
91167172 ATAATATTAAAAACTAATAATAC
1 ATAATA-TAAAAA-TAATAATAC
91167195 A
1 A
91167196 ATTCATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 6 0.27
22 6 0.27
23 10 0.45
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (21 bp):
ATAATATAAAAATAATAATAC
Found at i:91170673 original size:12 final size:12
Alignment explanation
Indices: 91170630--91170697 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
91170620 TTAATGAAAT
*
91170630 AACAATAATAATC
1 AACAATAATAA-G
91170643 AA-AATAATAA-
1 AACAATAATAAG
91170653 AACACATAATAAG
1 AACA-ATAATAAG
*
91170666 AATAATAATAAG
1 AACAATAATAAG
* *
91170678 CAGAA-AATGAAG
1 AACAATAAT-AAG
91170690 AACAATAA
1 AACAATAA
91170698 AAATAACAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
10 2 0.04
11 4 0.09
12 32 0.71
13 7 0.16
ACGTcount: A:0.66, C:0.09, G:0.07, T:0.18
Consensus pattern (12 bp):
AACAATAATAAG
Found at i:91170780 original size:31 final size:32
Alignment explanation
Indices: 91170740--91170874 Score: 102
Period size: 31 Copynumber: 4.2 Consensus size: 32
91170730 AAGCTAGTGC
*
91170740 AAAAAATAATAATAATAGGAAAA-ATAATAAG
1 AAAAAATAATAATAATAAGAAAATATAATAAG
* *
91170771 AAAATATAATAATATTAAGAAAATATAATAAAAG
1 AAAAAATAATAATAATAAGAAAATATAAT--AAG
* *
91170805 TAAAAATAA-AATAATAA-AAAATAAAATAGTAGG
1 AAAAAATAATAATAATAAGAAAATATAATA--A-G
*
91170838 AAAATAA-AATAAGGAATAA-AAAATA-AATAAAG
1 AAAA-AATAATAA-TAATAAGAAAATATAAT-AAG
91170870 AAAAA
1 AAAAA
91170875 GGGTAAACGG
Statistics
Matches: 85, Mismatches: 9, Indels: 20
0.75 0.08 0.18
Matches are distributed among these distances:
30 1 0.01
31 21 0.25
32 20 0.24
33 14 0.16
34 17 0.20
35 12 0.14
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (32 bp):
AAAAAATAATAATAATAAGAAAATATAATAAG
Found at i:91170783 original size:16 final size:16
Alignment explanation
Indices: 91170760--91170849 Score: 85
Period size: 15 Copynumber: 5.4 Consensus size: 16
91170750 AATAATAGGA
91170760 AAAATAATAAGAAAATAT
1 AAAATAATAAG-AAA-AT
*
91170778 AATAATATTAAGAAAAT
1 AA-AATAATAAGAAAAT
*
91170795 ATAATAA-AAGTAAAAAT
1 AAAATAATAAG--AAAAT
91170812 AAAATAATAA-AAAAT
1 AAAATAATAAGAAAAT
* *
91170827 AAAATAGTAGGAAAAT
1 AAAATAATAAGAAAAT
91170843 AAAATAA
1 AAAATAA
91170850 GGAATAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
15 16 0.27
16 15 0.25
17 14 0.23
18 7 0.12
19 8 0.13
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (16 bp):
AAAATAATAAGAAAAT
Found at i:91170789 original size:19 final size:19
Alignment explanation
Indices: 91170762--91170821 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
91170752 TAATAGGAAA
91170762 AATAATAAGAAAATATAAT
1 AATAATAAGAAAATATAAT
*
91170781 AATATTAAGAAAATATAAT
1 AATAATAAGAAAATATAAT
*
91170800 AA-AAGT-A-AAAATAAAAT
1 AATAA-TAAGAAAATATAAT
91170817 AATAA
1 AATAA
91170822 AAAATAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 11 0.31
18 4 0.11
19 21 0.58
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (19 bp):
AATAATAAGAAAATATAAT
Found at i:91170794 original size:48 final size:48
Alignment explanation
Indices: 91170742--91170874 Score: 128
Period size: 48 Copynumber: 2.7 Consensus size: 48
91170732 GCTAGTGCAA
* * *
91170742 AAAATAATAATAATAGGAAAAAT-AATAAGAAAATATAATAATATTAAG
1 AAAATAATAATAAAAGGAAAAATAAATAAGAAAAAATAA-AATAGTAAG
* * *
91170790 AAAAT-ATAATAAAAGTAAAAATAAAATAATAAAAAATAAAATAGTAGG
1 AAAATAATAATAAAAGGAAAAAT-AAATAAGAAAAAATAAAATAGTAAG
**
91170838 AAAATAA-AATAAGGAATAAAAAATAAATAAAGAAAAA
1 AAAATAATAATAA--AAGGAAAAATAAAT-AAGAAAAA
91170875 GGGTAAACGG
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
47 15 0.21
48 22 0.31
49 18 0.26
50 15 0.21
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.20
Consensus pattern (48 bp):
AAAATAATAATAAAAGGAAAAATAAATAAGAAAAAATAAAATAGTAAG
Found at i:91171951 original size:27 final size:26
Alignment explanation
Indices: 91171916--91172027 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 26
91171906 AACATGGCTG
* *
91171916 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
91171942 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
91171970 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
91171997 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
91172025 CCA
1 CCA
91172028 AGACGCTTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.08
27 38 0.51
28 31 0.41
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:91173470 original size:24 final size:24
Alignment explanation
Indices: 91173443--91173513 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
91173433 CTAGATTTCC
**
91173443 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
91173467 TCCCTTATCAACTCCTAAATCTTA
1 TCCCTTATCAACTCCTAAATCCTA
91173491 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
91173514 CTCCTGACAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:91179806 original size:27 final size:25
Alignment explanation
Indices: 91179734--91179844 Score: 89
Period size: 27 Copynumber: 4.2 Consensus size: 25
91179724 AGCATGGTTG
* *
91179734 CCAGAACAGATAATGT-GAAAGAGTCA
1 CCAGAACAGATAATGTGGCAA-A-CCA
91179760 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCA-AACCA
*
91179788 CCAGAACAGATATATGTGGCAAGCCA
1 CCAGAACAGATA-ATGTGGCAAACCA
* * *
91179814 CCATATCAGATAATTTGTGGCATACCA
1 CCAGAACAGATAA--TGTGGCAAACCA
91179841 CCAG
1 CCAG
91179845 GATGCTTCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
25 1 0.01
26 19 0.27
27 35 0.50
28 11 0.16
29 3 0.04
30 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.18
Consensus pattern (25 bp):
CCAGAACAGATAATGTGGCAAACCA
Found at i:91179816 original size:54 final size:53
Alignment explanation
Indices: 91179734--91179844 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 53
91179724 AGCATGGTTG
*
91179734 CCAGAACAGATAATGTGAAAGAGTCACCAGATACAGATAA-TCGTGGCAGAACCA
1 CCAGAACAGATAATGTGAAAGAGCCACCAGAT-CAGATAATTCGTGGCA-AACCA
** * * *
91179788 CCAGAACAGATATATGTGGCA-AGCCACCATATCAGATAATTTGTGGCATACCA
1 CCAGAACAGATA-ATGTGAAAGAGCCACCAGATCAGATAATTCGTGGCAAACCA
91179841 CCAG
1 CCAG
91179845 GATGCTTCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
53 15 0.31
54 28 0.57
55 6 0.12
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATAATGTGAAAGAGCCACCAGATCAGATAATTCGTGGCAAACCA
Found at i:91190227 original size:29 final size:28
Alignment explanation
Indices: 91190144--91190235 Score: 89
Period size: 28 Copynumber: 3.2 Consensus size: 28
91190134 TGAGGCCTGA
* * *
91190144 ATAT-AATGTGACTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCC-TAAGGGCC
* *
91190172 ATATTAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTAA-GGGCC
91190200 ATATGAATGTGAATTGGGCCTCAAGGGCC
1 ATATGAATGTGAATTGGGCCT-AAGGGCC
*
91190229 ATTTGAA
1 ATATGAA
91190236 CATGAATTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
27 1 0.02
28 25 0.47
29 25 0.47
30 2 0.04
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (28 bp):
ATATGAATGTGAATTGGGCCTAAGGGCC
Found at i:91190241 original size:29 final size:29
Alignment explanation
Indices: 91190156--91190290 Score: 100
Period size: 29 Copynumber: 4.7 Consensus size: 29
91190146 ATAATGTGAC
** *
91190156 TTGGGCCGGATGGGCCATAT-TA-ATGAGA
1 TTGGGCCTAATGGGCCATATGAACATGA-A
**
91190184 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAACATGAA
*
91190213 TTGGGCCTCAA-GGGCCATTTGAACATGAA
1 TTGGGCCT-AATGGGCCATATGAACATGAA
* **
91190242 TTTGGCCGGATGGGCCATAT-AA-ATGAGA
1 TTGGGCCTAATGGGCCATATGAACATGA-A
** *
91190270 CCGGGCCTAATGGACCATATG
1 TTGGGCCTAATGGGCCATATG
91190291 CATGTTTGTA
Statistics
Matches: 84, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
27 4 0.05
28 36 0.43
29 39 0.46
30 5 0.06
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAACATGAA
Found at i:91190282 original size:28 final size:28
Alignment explanation
Indices: 91190156--91190289 Score: 110
Period size: 28 Copynumber: 4.7 Consensus size: 28
91190146 ATAATGTGAC
** *
91190156 TTGGGCCGGATGGGCCATATTAATGAGA
1 TTGGGCCTAATGGGCCATATAAATGAGA
* *
91190184 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATAAATGAG-A
*
91190213 TTGGGCCTCAA-GGGCCATTTGAACATGA-A
1 TTGGGCCT-AATGGGCCATAT-AA-ATGAGA
* **
91190242 TTTGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCTAATGGGCCATATAAATGAGA
** *
91190270 CCGGGCCTAATGGACCATAT
1 TTGGGCCTAATGGGCCATAT
91190290 GCATGTTTGT
Statistics
Matches: 83, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
27 4 0.05
28 41 0.49
29 32 0.39
30 3 0.04
31 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAAATGAGA
Found at i:91193765 original size:16 final size:16
Alignment explanation
Indices: 91193727--91193765 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
91193717 GTAGATCGGC
* *
91193727 AAAAGCCAAAATACCG
1 AAAAGCTAAAATACCA
*
91193743 AAAAGCTAAAATGCCA
1 AAAAGCTAAAATACCA
91193759 AAAAGCT
1 AAAAGCT
91193766 GAAAGTTTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.21, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAGCTAAAATACCA
Found at i:91203140 original size:16 final size:18
Alignment explanation
Indices: 91203121--91203158 Score: 55
Period size: 15 Copynumber: 2.3 Consensus size: 18
91203111 ATATTCTCAT
91203121 TTTTTTCA-TTTCT-TCC
1 TTTTTTCATTTTCTCTCC
91203137 -TTTTTCATTTTCTCTCC
1 TTTTTTCATTTTCTCTCC
91203154 TTTTT
1 TTTTT
91203159 GACAAACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.37
16 5 0.26
17 3 0.16
18 4 0.21
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTCATTTTCTCTCC
Found at i:91203142 original size:15 final size:17
Alignment explanation
Indices: 91203122--91203158 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
91203112 TATTCTCATT
91203122 TTTTTCA-TTTCT-TCC
1 TTTTTCATTTTCTCTCC
91203137 TTTTTCATTTTCTCTCC
1 TTTTTCATTTTCTCTCC
91203154 TTTTT
1 TTTTT
91203159 GACAAACAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 7 0.35
16 5 0.25
17 8 0.40
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTCATTTTCTCTCC
Found at i:91206943 original size:24 final size:24
Alignment explanation
Indices: 91206913--91206961 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
91206903 TGATTGCCAG
91206913 TGAATTTATTTCC-GATGATTGTTA
1 TGAATTTATTTCCAG-TGATTGTTA
91206937 TGAATTTATTTCCAGTGATTGTTA
1 TGAATTTATTTCCAGTGATTGTTA
91206961 T
1 T
91206962 AAAAATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.51
Consensus pattern (24 bp):
TGAATTTATTTCCAGTGATTGTTA
Found at i:91216241 original size:18 final size:19
Alignment explanation
Indices: 91216208--91216244 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
91216198 ACTGTTGCAC
91216208 ATGAATGGATTAGTTACAT
1 ATGAATGGATTAGTTACAT
91216227 ATGAATGGA-TAGTTACAT
1 ATGAATGGATTAGTTACAT
91216245 GTTAAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (19 bp):
ATGAATGGATTAGTTACAT
Found at i:91216778 original size:32 final size:32
Alignment explanation
Indices: 91216737--91216799 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
91216727 TGTTAAATGA
* *
91216737 ACAAATTTGACGAGGAAGATTCGACAACTTTG
1 ACAAATTTGACAAGGAAGATTCAACAACTTTG
*
91216769 ACAAATTTGACAAGGAAGATTCAACATCTTT
1 ACAAATTTGACAAGGAAGATTCAACAACTTT
91216800 AAAATGTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (32 bp):
ACAAATTTGACAAGGAAGATTCAACAACTTTG
Found at i:91216906 original size:69 final size:69
Alignment explanation
Indices: 91216795--91217392 Score: 860
Period size: 69 Copynumber: 8.7 Consensus size: 69
91216785 AGATTCAACA
*
91216795 TCTTTAAAATGTGTTCATTTACGTTCTATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
91216860 GTAG
66 GTAG
* * *
91216864 TCTTTACAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGTTGTAAAGGGCTGATAT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
91216929 GTAG
66 GTAG
* * * * *
91216933 TCTTTAAAATGTGTTCATTTACATTCGTTTTAAATGCTTAAGGTGCTACTATAAAGGGCTGA-TT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
91216997 GTAG
66 GTAG
* * * *
91217001 TCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
91217066 GTAG
66 GTAG
* * * * *
91217070 TCTTTAAAATGAGTTCGTTTACGGTCGATTCAAGTGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
91217135 GTAG
66 GTAG
* *
91217139 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGTTTAATGTGCTACTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
91217204 GTAG
66 GTAG
* * *
91217208 TCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTAATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
*
91217273 GTAT
66 GTAG
* * * * * * *
91217277 TCTTTAAAATGTGTTCATTTACATTCGATTTAAGTTCTTAATGAGTTGTTGTATAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
*
91217342 GTTG
66 GTAG
*
91217346 TC-TTAAAACTGTGTTCATTAACGTTC-ATTTTAAATGCTTAATGTGCT
1 TCTTTAAAA-TGTGTTCATTTACGTTCGA-TTTAAATGCTTAATGTGCT
91217393 TTTCAAAAAT
Statistics
Matches: 471, Mismatches: 55, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
68 69 0.15
69 402 0.85
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (69 bp):
TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
GTAG
Found at i:91217173 original size:275 final size:276
Alignment explanation
Indices: 91216795--91217392 Score: 869
Period size: 275 Copynumber: 2.2 Consensus size: 276
91216785 AGATTCAACA
* * * *
91216795 TCTTTAAAATGTGTTCATTTACGTTCTATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGAGTTCATTTACGGTCGATTCAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
* **
91216860 GTAGTCTTTACAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGTTGTAAAGGGCTG
66 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTG
* *
91216925 ATATGTAGTCTTTAAAATGTGTTCATTTACATTCGTTTTAAATGCTTAAGGTGCTACTATAAAGG
131 ATATGTAGTCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAAGGTGCTACTATAAAGG
* *
91216990 GCTGA-TTGTAGTCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGTGCTACTGTA
196 GCTAATTTGTAGTCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGAGCTACTGTA
91217054 AAGGGCTGATTTGTAG
261 AAGGGCTGATTTGTAG
* *
91217070 TCTTTAAAATGAGTTCGTTTACGGTCGATTCAAGTGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGAGTTCATTTACGGTCGATTCAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
*
91217135 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGTTTAATGTGCTACTGTAAAGGGCTG
66 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTG
* * * *
91217200 ATTTGTAGTCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGG
131 ATATGTAGTCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAAGGTGCTACTATAAAGG
* * * * * * **
91217265 GCTAATTTGTATTCTTTAAAATGTGTTCATTTACATTCGATTTAAGTTCTTAATGAGTTGTTGTA
196 GCTAATTTGTAGTCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGAGCTACTGTA
* *
91217330 TAGGGCTGATTTGTTG
261 AAGGGCTGATTTGTAG
* * * *
91217346 TC-TTAAAACTGTGTTCATTAACGTTC-ATTTTAAATGCTTAATGTGCT
1 TCTTTAAAA-TGAGTTCATTTACGGTCGA-TTCAAATGCTTAATGTGCT
91217393 TTTCAAAAAT
Statistics
Matches: 286, Mismatches: 34, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
275 190 0.66
276 96 0.34
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (276 bp):
TCTTTAAAATGAGTTCATTTACGGTCGATTCAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTG
ATATGTAGTCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAAGGTGCTACTATAAAGG
GCTAATTTGTAGTCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGAGCTACTGTA
AAGGGCTGATTTGTAG
Found at i:91217238 original size:35 final size:35
Alignment explanation
Indices: 91217130--91217238 Score: 80
Period size: 35 Copynumber: 3.1 Consensus size: 35
91217120 GTAAAGGGCT
* *
91217130 GATTTGTAGTCTTTAAAATGTGTTCATTTACGTTC
1 GATTTGTAGTCTTTAAAATGTGTTAATTTACATTC
* * * * * * * **
91217165 GATTT-AAATGTTT--AATGTGCTACTGTAAAGGGC
1 GATTTGTAGTCTTTAAAATGTGTTAATTTACA-TTC
91217198 TGATTTGTAGTCTTTAAAATGTGTTAATTTACATTC
1 -GATTTGTAGTCTTTAAAATGTGTTAATTTACATTC
91217234 GATTT
1 GATTT
91217239 AAATGCTTAA
Statistics
Matches: 49, Mismatches: 20, Indels: 10
0.62 0.25 0.13
Matches are distributed among these distances:
32 10 0.20
33 1 0.02
34 10 0.20
35 15 0.31
36 1 0.02
37 12 0.24
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.46
Consensus pattern (35 bp):
GATTTGTAGTCTTTAAAATGTGTTAATTTACATTC
Found at i:91225586 original size:6 final size:6
Alignment explanation
Indices: 91225567--91225599 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
91225557 GGATAGCAAT
*
91225567 TTTCCA TTTTCA TTTCCA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
91225600 TTATAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (6 bp):
TTTCCA
Found at i:91244771 original size:16 final size:16
Alignment explanation
Indices: 91244750--91244787 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
91244740 GAAAAAAATC
*
91244750 TTATTTTATTCTT-ATT
1 TTATTTCATT-TTGATT
91244766 TTATTTCATTTTGATT
1 TTATTTCATTTTGATT
91244782 TTATTT
1 TTATTT
91244788 AAATTAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATTTCATTTTGATT
Found at i:91247739 original size:40 final size:40
Alignment explanation
Indices: 91247669--91247846 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
91247659 AAACCAAGTA
* *
91247669 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
91247708 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
91247748 CCTTCGGGACTTAGCCTGGATATAGTAACGCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
91247788 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
91247828 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91247847 TTATCATCCG
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 14 0.11
40 110 0.89
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91255643 original size:40 final size:40
Alignment explanation
Indices: 91255573--91255750 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
91255563 AAACCAAGTA
* **
91255573 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTGAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
91255612 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
91255652 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
91255692 CCTTCGGGGCTTTGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
91255732 CCTTCGGTACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91255751 TTATCATCCA
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 15 0.12
40 109 0.88
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91273434 original size:16 final size:16
Alignment explanation
Indices: 91273413--91273443 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91273403 AATCTTATTT
*
91273413 TTATTTTTATTTTATA
1 TTATTTTGATTTTATA
91273429 TTATTTTGATTTTAT
1 TTATTTTGATTTTAT
91273444 GTTAAATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATTTTGATTTTATA
Found at i:91278002 original size:12 final size:12
Alignment explanation
Indices: 91277985--91278017 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
91277975 GTAGAAGACA
91277985 TTATGGATGTAT
1 TTATGGATGTAT
91277997 TTATGGATGTAT
1 TTATGGATGTAT
91278009 TTATGGATG
1 TTATGGATG
91278018 ACTTCTCGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.48
Consensus pattern (12 bp):
TTATGGATGTAT
Found at i:91280728 original size:8 final size:9
Alignment explanation
Indices: 91280707--91280739 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
91280697 TCTTCCTCCC
*
91280707 TTATTAATT
1 TTATTTATT
91280716 TTATTTA-T
1 TTATTTATT
91280724 TTATTTATT
1 TTATTTATT
91280733 TTATTTA
1 TTATTTA
91280740 CTTCTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
TTATTTATT
Found at i:91280733 original size:17 final size:17
Alignment explanation
Indices: 91280707--91280739 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
91280697 TCTTCCTCCC
91280707 TTATTAATTTTATTTAT
1 TTATTAATTTTATTTAT
*
91280724 TTATTTATTTTATTTA
1 TTATTAATTTTATTTA
91280740 CTTCTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTATTAATTTTATTTAT
Found at i:91280756 original size:9 final size:9
Alignment explanation
Indices: 91280744--91280830 Score: 52
Period size: 9 Copynumber: 9.3 Consensus size: 9
91280734 TATTTACTTC
91280744 TTTTATTAT
1 TTTTATTAT
91280753 TTTTATTAT
1 TTTTATTAT
91280762 TTTTAATATCAT
1 TTTT-AT-T-AT
* *
91280774 TATTATGAT
1 TTTTATTAT
**
91280783 TTTCCTAGCAT
1 TTT--TATTAT
*
91280794 TTCTATTAT
1 TTTTATTAT
*
91280803 TATTATTA-
1 TTTTATTAT
*
91280811 TTTTACT-T
1 TTTTATTAT
91280819 TTTTATTAT
1 TTTTATTAT
91280828 TTT
1 TTT
91280831 AATTTTTCTT
Statistics
Matches: 58, Mismatches: 13, Indels: 14
0.68 0.15 0.16
Matches are distributed among these distances:
8 11 0.19
9 31 0.53
10 2 0.03
11 9 0.16
12 5 0.09
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTATTAT
Found at i:91280826 original size:16 final size:16
Alignment explanation
Indices: 91280805--91280837 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
91280795 TCTATTATTA
*
91280805 TTATTATTTTACTTTT
1 TTATTATTTTAATTTT
91280821 TTATTATTTTAATTTT
1 TTATTATTTTAATTTT
91280837 T
1 T
91280838 CTTCTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTATTTTAATTTT
Found at i:91283767 original size:25 final size:25
Alignment explanation
Indices: 91283739--91283789 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
91283729 CCCTTATAAT
* * *
91283739 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
91283764 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
91283789 G
1 G
91283790 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:91290553 original size:22 final size:21
Alignment explanation
Indices: 91290504--91290553 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
91290494 CTTCTCCAAA
*
91290504 ACCAGTCTACTATTCCTTTCTT
1 ACCA-TCTACTACTCCTTTCTT
*
91290526 CCCATCTACTACTCTCTTTCTT
1 ACCATCTACTACTC-CTTTCTT
*
91290548 ATCATC
1 ACCATC
91290554 ACTTTTGCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.18, C:0.36, G:0.02, T:0.44
Consensus pattern (21 bp):
ACCATCTACTACTCCTTTCTT
Found at i:91301212 original size:50 final size:50
Alignment explanation
Indices: 91301135--91301373 Score: 255
Period size: 50 Copynumber: 4.7 Consensus size: 50
91301125 ACCGAAGCTC
*
91301135 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * *
91301185 TTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * * *
91301235 TCTGATACACGTAGTAGCCTTCACTCAGTACTACACATGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * *
91301286 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * **
91301335 TCGTCTTAAACACATAGTAGCATGCAAATAGTACTACAC
1 TC-TGGT--ACACATAGTAGCCTGCACTTAGTACTACAC
91301374 GTGTTGTCAC
Statistics
Matches: 155, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 3 0.02
50 86 0.55
51 40 0.26
52 26 0.17
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:91301320 original size:101 final size:100
Alignment explanation
Indices: 91301146--91301332 Score: 275
Period size: 101 Copynumber: 1.9 Consensus size: 100
91301136 CTGGTACGCA
* * ** *
91301146 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATTTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTCAGTACTACACATGTGACCGAACAATCGGGTACACATAGTAGCCTGCACTT
*
91301211 AGTACTACACACGTGACCTAACCATCTGATACACG
66 AGTACTACACAAGTGACCTAACCATCTGATACACG
* * * *
91301246 TAGTAGCCTTCACTCAGTACTACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTCAGTACTACACATGTGACCGAA-CAATCGGGTACACATAGTAGCCTGCACT
91301311 TAGTACTACACAAGTGACCTAA
65 TAGTACTACACAAGTGACCTAA
91301333 AATCGTCTTA
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
100 32 0.42
101 44 0.58
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTCAGTACTACACATGTGACCGAACAATCGGGTACACATAGTAGCCTGCACTT
AGTACTACACAAGTGACCTAACCATCTGATACACG
Found at i:91303587 original size:21 final size:21
Alignment explanation
Indices: 91303546--91303588 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
91303536 GGCAACCGAA
* *
91303546 TCATGCTATTTCATATACATT
1 TCATGCCATTTCATAAACATT
91303567 TCATGCCATTT-ATAAACCATT
1 TCATGCCATTTCATAAA-CATT
91303588 T
1 T
91303589 ATTCAACCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (21 bp):
TCATGCCATTTCATAAACATT
Found at i:91311280 original size:43 final size:41
Alignment explanation
Indices: 91311226--91311381 Score: 150
Period size: 43 Copynumber: 3.7 Consensus size: 41
91311216 ATGCCATATC
* *
91311226 CCAGATATGGTCTTACATGTTATCACACATCGATGCCAATGT
1 CCAGACATGGTCTTACATGTAATCACA-ATCGATGCCAATGT
*** * * *
91311268 CCTAGACATGGTCTTACACAAAATCATATAACGATGACAATGT
1 CC-AGACATGGTCTTACATGTAATCACA-ATCGATGCCAATGT
* * *
91311311 CCCAGACATGATCTTACATGTAACCACAATACAATGCCAATGT
1 -CCAGACATGGTCTTACATGTAATCACAAT-CGATGCCAATGT
*
91311354 CCCGAACATGGTCTTACATGTAATCACA
1 CCAG-ACATGGTCTTACATGTAATCACA
91311382 TCTCGGTAAT
Statistics
Matches: 89, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 6 0.07
43 81 0.91
44 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (41 bp):
CCAGACATGGTCTTACATGTAATCACAATCGATGCCAATGT
Found at i:91320970 original size:55 final size:55
Alignment explanation
Indices: 91320904--91321007 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
91320894 ATTCAATGTC
91320904 ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTCATACAT
1 ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTCATACAT
91320959 ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTC
1 ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTC
91321008 GTACGTACCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (55 bp):
ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTCATACAT
Found at i:91323729 original size:6 final size:6
Alignment explanation
Indices: 91323715--91323768 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
91323705 TTTTTCCCAA
*
91323715 TTTTC- TTTTCT TTTTCT TTTTCT TTCTT-T TTTT-T TTGTTTT TTTTACT
1 TTTTCT TTTTCT TTTTCT TTTTCT TT-TTCT TTTTCT TT-TTCT TTTT-CT
91323763 TTTTCT
1 TTTTCT
91323769 GCAGACTCTT
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
5 10 0.23
6 23 0.53
7 10 0.23
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:91323755 original size:10 final size:10
Alignment explanation
Indices: 91323715--91323766 Score: 61
Period size: 10 Copynumber: 5.0 Consensus size: 10
91323705 TTTTTCCCAA
91323715 TTTTCTTTTCT
1 TTTTCTTTT-T
91323726 TTTTCTTTTT
1 TTTTCTTTTT
*
91323736 CTTTCTTTTT
1 TTTTCTTTTT
91323746 TTTT-TGTTTT
1 TTTTCT-TTTT
91323756 TTTTACTTTTT
1 TTTT-CTTTTT
91323767 CTGCAGACTC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
9 1 0.03
10 21 0.58
11 13 0.36
12 1 0.03
ACGTcount: A:0.02, C:0.12, G:0.02, T:0.85
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:91323766 original size:21 final size:20
Alignment explanation
Indices: 91323715--91323766 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
91323705 TTTTTCCCAA
*
91323715 TTTTCTTTTCTTTTTCTTTT
1 TTTTCTTTTTTTTTTCTTTT
*
91323735 TCTTTCTTTTTTTTTTGTTTT
1 T-TTTCTTTTTTTTTTCTTTT
91323756 TTTTACTTTTT
1 TTTT-CTTTTT
91323767 CTGCAGACTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.02, C:0.12, G:0.02, T:0.85
Consensus pattern (20 bp):
TTTTCTTTTTTTTTTCTTTT
Found at i:91334031 original size:21 final size:22
Alignment explanation
Indices: 91334005--91334045 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
91333995 ACACACACTC
91334005 AACTTAATTGAGCT-ATTAATG
1 AACTTAATTGAGCTAATTAATG
91334026 AACTTAATTGAGCTAATTAA
1 AACTTAATTGAGCTAATTAA
91334046 AAACTACAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (22 bp):
AACTTAATTGAGCTAATTAATG
Found at i:91334050 original size:21 final size:21
Alignment explanation
Indices: 91334005--91334050 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
91333995 ACACACACTC
*
91334005 AACTTAATTGAGCTATTAATG
1 AACTTAATTGAGCTATTAATA
91334026 AACTTAATTGAGCTAATTAA-A
1 AACTTAATTGAGCT-ATTAATA
91334047 AACT
1 AACT
91334051 ACAAGACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (21 bp):
AACTTAATTGAGCTATTAATA
Found at i:91334676 original size:40 final size:40
Alignment explanation
Indices: 91334609--91334717 Score: 166
Period size: 40 Copynumber: 2.8 Consensus size: 40
91334599 TTTAGTGGCA
* *
91334609 TTAGCGGCGCTTTTTAAAAAACACCGCTAATGCTCGATCT
1 TTAGCGGCGCTTTTTAACAAACGCCGCTAATGCTCGATCT
*
91334649 TTAGTGGCGCTTTTTAACAAACGCCGCTAATGCTCGATCT
1 TTAGCGGCGCTTTTTAACAAACGCCGCTAATGCTCGATCT
* *
91334689 TTAGCGACGC-TTTGAACAAACGCCGCTAA
1 TTAGCGGCGCTTTTTAACAAACGCCGCTAA
91334718 AAATTTTGCA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 18 0.29
40 45 0.71
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTAACAAACGCCGCTAATGCTCGATCT
Found at i:91335765 original size:288 final size:286
Alignment explanation
Indices: 91335132--91335807 Score: 820
Period size: 288 Copynumber: 2.3 Consensus size: 286
91335122 TATGGCTGAT
* *
91335132 TGTTTTTTAATTTATATGTTAAATATTTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAA
1 TGTTTTTT-ATTTATATATTAAATATTTTCTTATATAATTGTAAAAGAGATAATATTAATTTTAA
* *
91335197 AATATTGAATTAATTATCATTATAGTTTAGGGTTTACGATTTAGGGCATATGGTTAAGGGTTTAA
65 AATATTGAATTAATTATCATTATAGTTTAGGGTTTAAGATTAAGGG-ATATGGTTAAGGGTTTAA
91335262 GGTTTATGAGTTACTATTTTAAGGTTTATGGATTATGGGTTCAGGGATTATAGTTTAAGGATTGG
129 GGTTTATGAGTTACTATTTTAAGGTTTATGGATTA---G-T-A-GGATTATA---TAAGGATTGG
* * *
91335327 GGATTAAGGTTTAGGGGTTAGGGGTCTAGGGTTAAGTGTTTATGTTTTAGGATTTAGGGTTTAAA
185 GGATTAAGCTTTAGGGGTTAGGGGTCTAGGGTTAAGTGTTTATATTTTAAGATTTAGGGTTTAAA
* *
91335392 AAATAGGGATTAGGAGTTTAGTGTTTAGATTAATTAG
250 AAATAGAGATTAGGAGTTTAGGGTTTAGATTAATTAG
*
91335429 TGTTTATTAATTTATATGA-TAAATATTTTCTTATATAATTGTAAAAGAGATAATATTAATTTTA
1 TGTTT-TTTATTTATAT-ATTAAATATTTTCTTATATAATTGTAAAAGAGATAATATTAATTTTA
* *
91335493 AAATATTGAATTAATTATTATTATTATTATAGTTTAGGGTTTATAGGTTAAGGTG-TATGGTTAA
64 AAATATTG----AATTA--ATTATCATTATAGTTTAGGGTTTA-AGATTAAGG-GATATGGTTAA
*
91335557 GGGTTTAAGGTTTATGAGTTACTATTTTAAGGTTTATGGATTA-T-GG-TT-TA-CAGG-TTGGG
121 GGGTTTAAGGTTTATGAGTTACTATTTTAAGGTTTATGGATTAGTAGGATTATATAAGGATTGGG
* *
91335616 GTTTAAGCTTTAGGGGTTAGGGGT-TCAGGGTTAA-TGGTTTATATTTTAAGATTTTATGGTTTA
186 GATTAAGCTTTAGGGGTTAGGGGTCT-AGGGTTAAGT-GTTTATATTTTAAGA-TTTAGGGTTTA
*** * *
91335679 TGGATTAGAGATTAGGGGTTTAGGGTTTAGATTAATTAG
248 AAAAATAGAGATTAGGAGTTTAGGGTTTAGATTAATTAG
* * *
91335718 TGTTTTTTATTTATATATTAAATAATTTCTTATATAATTGTAAAAGAGATAATATAAATTTTAAT
1 TGTTTTTTATTTATATATTAAATATTTTCTTATATAATTGTAAAAGAGATAATATTAATTTTAAA
* *
91335783 ATCTT-AA--AATTATGATTATAGTTTA
66 ATATTGAATTAATTATCATTATAGTTTA
91335808 AATTATTTAA
Statistics
Matches: 339, Mismatches: 26, Indels: 46
0.82 0.06 0.11
Matches are distributed among these distances:
279 16 0.05
281 1 0.00
283 2 0.01
287 3 0.01
288 106 0.31
289 50 0.15
293 2 0.01
294 2 0.01
295 2 0.01
297 65 0.19
298 3 0.01
301 5 0.01
303 75 0.22
304 6 0.02
305 1 0.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (286 bp):
TGTTTTTTATTTATATATTAAATATTTTCTTATATAATTGTAAAAGAGATAATATTAATTTTAAA
ATATTGAATTAATTATCATTATAGTTTAGGGTTTAAGATTAAGGGATATGGTTAAGGGTTTAAGG
TTTATGAGTTACTATTTTAAGGTTTATGGATTAGTAGGATTATATAAGGATTGGGGATTAAGCTT
TAGGGGTTAGGGGTCTAGGGTTAAGTGTTTATATTTTAAGATTTAGGGTTTAAAAAATAGAGATT
AGGAGTTTAGGGTTTAGATTAATTAG
Found at i:91338484 original size:23 final size:23
Alignment explanation
Indices: 91338454--91338657 Score: 142
Period size: 23 Copynumber: 9.2 Consensus size: 23
91338444 TGGCTACTGT
*
91338454 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
91338477 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
**
91338500 TGTTTAAATATTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
*
91338523 TGTCT--A----G-AAATTGAGA-
1 TGTTTAAATGCTGTAAATTGA-AG
* ** *
91338539 TGTTTTATCGCTGTA-ATTGAAT
1 TGTTTAAATGCTGTAAATTGAAG
* * * *
91338561 TATATAAATGTTGTTAATTG-AG
1 TGTTTAAATGCTGTAAATTGAAG
*
91338583 ATG-TTAAAGTGCTGCAAATTGAAG
1 -TGTTTAAA-TGCTGTAAATTGAAG
**
91338607 TGTTTAAACACTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* * *
91338630 TGCTTAAATGTTGTAAATTAAAG
1 TGTTTAAATGCTGTAAATTGAAG
91338653 TGTTT
1 TGTTT
91338658 TAAGTATTGC
Statistics
Matches: 139, Mismatches: 28, Indels: 28
0.71 0.14 0.14
Matches are distributed among these distances:
16 11 0.08
17 2 0.01
21 2 0.01
22 19 0.14
23 98 0.71
24 7 0.05
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Found at i:91338694 original size:23 final size:22
Alignment explanation
Indices: 91338668--91338735 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 22
91338658 TAAGTATTGC
91338668 AAATTGAAGAGTTTAGTTGCTAG
1 AAATTGAAGAGTTTAGTTGCT-G
*
91338691 AAATT-AAGATGTTTTA-TCGCTG
1 AAATTGAAGA-G-TTTAGTTGCTG
* *
91338713 CAAATTGAAGTGCTTAGTTGCTG
1 -AAATTGAAGAGTTTAGTTGCTG
91338736 GAAAAGAGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
22 8 0.22
23 21 0.58
24 7 0.19
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.37
Consensus pattern (22 bp):
AAATTGAAGAGTTTAGTTGCTG
Found at i:91339361 original size:11 final size:11
Alignment explanation
Indices: 91339341--91339369 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
91339331 TTTAATTTGA
91339341 TAAT-GAATTT
1 TAATAGAATTT
91339351 TAATAGAATTT
1 TAATAGAATTT
91339362 TAATAGAA
1 TAATAGAA
91339370 AATTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (11 bp):
TAATAGAATTT
Found at i:91341201 original size:667 final size:666
Alignment explanation
Indices: 91339816--91341560 Score: 2675
Period size: 667 Copynumber: 2.6 Consensus size: 666
91339806 GGATCGCATC
* *
91339816 AGATGATAAAGACACTTAGGTTTTAACCCCCTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
1 AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
91339881 CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
66 CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
* * * * *
91339946 CA-TTTTTTTAGTTGTGACTCATCTCGTTTTATTGACTCCCTTTTTGTCGACATTTGATTTTGTT
131 CATTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACT-CCTTTTTGTCGATATTTGATTTGGTT
* * * * * *
91340010 AGTTGCCCAACTATGCTCTTTTGTTTGATTTGCTGAATTATTTCTTATTGCTCTAAATAAG---A
195 AGTTGCCTAACTATGCTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTATAGATAAGAAAA
* * * * *
91340072 A-AAAAAATATCGATTATCAATTAGTTATTTGTTAATCGAGCTTGAATAGTCAATTTCATATTCT
260 AGAAAAAATATTGATTATTAATTAGTTATTTGTTGATTGAGCTTGAATAGTCAATTTCATATTTT
* * *
91340136 GAGAAGAAGCTCTTTTTTGTTCTTCAATAGTTATCGATGCGCTTGTTTTTAATTCAACATTTGTT
325 GAGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTGTTTTTAATTCAACATTTGTT
91340201 TAATTTTGCTAGTTTGGTAATTTCTAGTCAAACATGATAAGTTATTTTTAAAATTAAAATTTTTT
390 TAATTTTGCTAGTTTGGTAATTTCTAGTCAAACATGATAAGTTATTTTTAAAATTAAAATTTTTT
* * *
91340266 AGGTTGTTTCCTTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGCAAGTTTGACATTAAAACC
455 AGGCTGTTTCCCTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGCAAGTTTGACATCAAAACC
91340331 ATGATTTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTATCGTTGGTT
520 ATGATTTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTATCGTTGGTT
*
91340396 ATATGTGTGTCAACTTGACTTGTTATTCTAGAACTTACTTCGATTATGCATGTCGAGACCACACC
585 ATATGTATGTCAACTTGACTTGTTATTCTAGAACTTACTTCGATTATGCATGTCGAGACCACACC
*
91340461 TTTGATTTGGTATACTA
650 TTTGATTTGATATACTA
* *
91340478 AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCAT-AAAAGCCTCTCTTTTTATTTAACC
1 AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
* * *
91340542 CTTAGTGAAACCCGTTAAACCTAACATCCCGTTTCTTGATTAACTCGTTAATG-TAACCATAACC
66 CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
* *
91340606 CATTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTCATTTTTTGTTGATATTTGATTTGGTT
131 CATTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTC-CTTTTTGTCGATATTTGATTTGGTT
** *
91340671 AGTTGCCTAGTTATACTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTATAGATAAGAAAA
195 AGTTGCCTAACTATGCTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTATAGATAAGAAAA
*
91340736 ATGAAAATAATATTGATTATTAATTAGTAATTTGTTGATTGAGCTTGAATAGTCAATTTCATATT
260 A-GAAAA-AATATTGATTATTAATTAGTTATTTGTTGATTGAGCTTGAATAGTCAATTTCATATT
*
91340801 TTGAGAAGAAGCTCATTTTTGTTCTTGAATAGATATTGATGCGCTTGTTTTTAATTCAACATTTG
323 TTGAGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTGTTTTTAATTCAACATTTG
* *
91340866 TTTAATTTTGCTAGTTTGATAATTTCTAGTCAAACATGATAAGTTATTTTTAGAATTAAAATTTT
388 TTTAATTTTGCTAGTTTGGTAATTTCTAGTCAAACATGATAAGTTATTTTTAAAATTAAAATTTT
* *
91340931 TTAGGCTGTTTCCCTGAATTGAGGTATTATTTTGAAGTTTTAAATTTGTAAGTTTGACATCAAAA
453 TTAGGCTGTTTCCCTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGCAAGTTTGACATCAAAA
* *
91340996 CCATGA-TTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTGTTGTTGG
518 CCATGATTTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTATCGTTGG
* * * *
91341060 TTTTGA-GTATGTCAACTTGATTTGTTATTTTAGAACTTATTTCGATTATGCATGTCGAGACCAC
583 TTAT-ATGTATGTCAACTTGACTTGTTATTCTAGAACTTACTTCGATTATGCATGTCGAGACCAC
91341124 ACCTTTGATTTGATATACTA
647 ACCTTTGATTTGATATACTA
* * * *
91341144 AGATGATAAAGGCACTTAGGTTTTAACACACTTATCTCATAAAAAGGCACCCTTTTTAATTAACC
1 AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
* *
91341209 CTTAGTGAACCCCGTTAAACCAAACATCCCGTTTCTTGATTAGCCCATTAATGTTAACCATAACC
66 CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
* * * *
91341274 CATTTTTTTTCGTTGTGACTTTTCTTATTTTATTGACTCCTTTTTGTCAATATTTGATTTGATTA
131 CATTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTCCTTTTTGTCGATATTTGATTTGGTTA
* * ** * *
91341339 GTTGCCTAACTATGCTCTTCTATTTGATTTGCTAAATTATTTCTTATAATTTTAGATAAAAAAAG
196 GTTGCCTAACTATGCTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTATAGATAAGAAAA-
* * *
91341404 AGAAAACAAAAATATTGATTATTAATTAGTTATTTGTTGATTGAGTTTGGACAGTCAATTTCATA
260 AG---A-AAAAATATTGATTATTAATTAGTTATTTGTTGATTGAGCTTGAATAGTCAATTTCATA
* * *
91341469 TTTTGAGAAGAAGCTCGTTTTTTTTCTTGAATAGTTATTGATGCG-TGGATTTTTAATTCAACAT
321 TTTTGAGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTG-TTTTTAATTCAACAT
91341533 TTGTTTAATGTTT-CTAGTTTGGTAATTT
385 TTGTTTAAT-TTTGCTAGTTTGGTAATTT
91341561 ATCAACTCAA
Statistics
Matches: 982, Mismatches: 83, Indels: 28
0.90 0.08 0.03
Matches are distributed among these distances:
660 14 0.01
661 177 0.18
662 38 0.04
664 2 0.00
666 174 0.18
667 388 0.40
668 49 0.05
669 2 0.00
670 132 0.13
671 6 0.01
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.43
Consensus pattern (666 bp):
AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
CATTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTCCTTTTTGTCGATATTTGATTTGGTTA
GTTGCCTAACTATGCTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTATAGATAAGAAAAA
GAAAAAATATTGATTATTAATTAGTTATTTGTTGATTGAGCTTGAATAGTCAATTTCATATTTTG
AGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTGTTTTTAATTCAACATTTGTTT
AATTTTGCTAGTTTGGTAATTTCTAGTCAAACATGATAAGTTATTTTTAAAATTAAAATTTTTTA
GGCTGTTTCCCTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGCAAGTTTGACATCAAAACCA
TGATTTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTATCGTTGGTTA
TATGTATGTCAACTTGACTTGTTATTCTAGAACTTACTTCGATTATGCATGTCGAGACCACACCT
TTGATTTGATATACTA
Found at i:91345345 original size:24 final size:25
Alignment explanation
Indices: 91345318--91345365 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
91345308 AACATTAACA
*
91345318 ATTTTTTTTGTT-AATTTGATCATT
1 ATTTTTTTAGTTAAATTTGATCATT
*
91345342 ATTTTTTTAGTTAAATTTGGTCAT
1 ATTTTTTTAGTTAAATTTGATCAT
91345366 CAACCTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.23, C:0.04, G:0.10, T:0.62
Consensus pattern (25 bp):
ATTTTTTTAGTTAAATTTGATCATT
Found at i:91345549 original size:22 final size:23
Alignment explanation
Indices: 91345519--91345561 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
91345509 GTCAACAAAT
*
91345519 AATTTAAAAATT-ATAAAAATAA
1 AATTAAAAAATTCATAAAAATAA
*
91345541 AATTAAAAAGTTCATAAAAAT
1 AATTAAAAAATTCATAAAAAT
91345562 TAAGAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
AATTAAAAAATTCATAAAAATAA
Found at i:91350534 original size:46 final size:45
Alignment explanation
Indices: 91350481--91350656 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
91350471 TATTTGGGCA
91350481 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
91350527 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
91350574 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
91350620 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91350657 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:91350636 original size:93 final size:93
Alignment explanation
Indices: 91350477--91350648 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
91350467 GGGATATTTG
* * *
91350477 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
91350542 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
91350570 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
91350635 TTGAGTTCGAGTTC
66 TTGAGTCCGAGTTC
91350649 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:91359939 original size:5 final size:5
Alignment explanation
Indices: 91359929--91359960 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
91359919 CAATTTGTGA
91359929 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
91359961 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:91359954 original size:9 final size:9
Alignment explanation
Indices: 91359930--91359960 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
91359920 AATTTGTGAA
91359930 AAATAAAAT
1 AAATAAAAT
91359939 AAAATAAAAT
1 -AAATAAAAT
91359949 AAATAAAAT
1 AAATAAAAT
91359958 AAA
1 AAA
91359961 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:91360760 original size:19 final size:19
Alignment explanation
Indices: 91360724--91360771 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
91360714 TTGTTTTGTG
*
91360724 TGTCTTTTACTGTTCTTTT
1 TGTCTTTTACAGTTCTTTT
91360743 TGTCTTTT-CAGTTACTTTT
1 TGTCTTTTACAGTT-CTTTT
*
91360762 GGTCTGTTTA
1 TGTCT-TTTA
91360772 GTGTTGTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 4 0.17
19 17 0.71
20 3 0.12
ACGTcount: A:0.08, C:0.15, G:0.15, T:0.62
Consensus pattern (19 bp):
TGTCTTTTACAGTTCTTTT
Found at i:91364171 original size:115 final size:115
Alignment explanation
Indices: 91363954--91364168 Score: 273
Period size: 115 Copynumber: 1.9 Consensus size: 115
91363944 TTTGTTTAAT
* *
91363954 GTTTATTGTGATTTGTTAGGTAATGAATGTAAATTTTTATTAATTTTTAATTTACTTTAAAGTTA
1 GTTTATTATGATTTGTTAGGTAATGAATGTAAATTTTTAATAATTTTTAATTTACTTTAAAGTTA
* * * * *
91364019 TTTTGTTAGTAAGTTTTGTGATTAGGTTAATTGTTAGTTTAGGGTTTAGG
66 TTTTGTTAGTAACTATTATAATTAGATTAATTGTTAGTTTAGGGTTTAGG
* *
91364069 GTTTATTATGATTTGTTAGGTTATGAATG-CAATCTTTTAAT-ATCTTTTAATTTA-TTTGAAAG
1 GTTTATTATGATTTGTTAGGTAATGAATGTAAAT-TTTTAATAAT-TTTTAATTTACTTT-AAAG
91364131 TTATTTTGTTAGTAACTATTAT-A--A-ATTAATTGTTAGTT
63 TTATTTTGTTAGTAACTATTATAATTAGATTAATTGTTAGTT
91364169 AGTGACGACA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
111 13 0.15
112 1 0.01
114 9 0.10
115 66 0.74
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.53
Consensus pattern (115 bp):
GTTTATTATGATTTGTTAGGTAATGAATGTAAATTTTTAATAATTTTTAATTTACTTTAAAGTTA
TTTTGTTAGTAACTATTATAATTAGATTAATTGTTAGTTTAGGGTTTAGG
Found at i:91372320 original size:30 final size:30
Alignment explanation
Indices: 91372286--91372346 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91372276 TCCTTAACTA
91372286 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
91372316 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
91372346 A
1 A
91372347 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:91376672 original size:43 final size:43
Alignment explanation
Indices: 91376624--91376735 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 43
91376614 GCTGGTATTA
*
91376624 TATTCGTGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
91376667 TATTCGGGCCTTCGTGCATAGCACGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
91376710 TATTCGGGCCTTCATGCCCAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
91376736 GTAATGCGGT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.12, C:0.27, G:0.31, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Done.