Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 274 of 344
Found at i:91782905 original size:12 final size:13
Alignment explanation
Indices: 91782888--91782925 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
91782878 ATCCTGGAAT
91782888 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
91782900 ATTAAGAACACATA
1 ATTAAGAACA-AGA
91782914 ATTAAGAACAAG
1 ATTAAGAACAAG
91782926 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:91788835 original size:46 final size:45
Alignment explanation
Indices: 91788780--91788948 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 45
91788770 TTATTTGGCT
91788780 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACATTATGAGAGCC
* * *
91788826 AGTGTAAGACCATGTCTGGGACATGGCGTCG--ACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCACATT---ATGAGAGCC
* * *
91788874 AGTGTAAGACATGTCTGGGATATGCATCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCAC-ATTATG-AGAGCC
*
91788920 AGTGTAAGACATGTCTAGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
91788949 GGTAAGAGAT
Statistics
Matches: 102, Mismatches: 11, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
45 6 0.06
46 44 0.43
47 30 0.29
48 20 0.20
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACATTATGAGAGCC
Found at i:91788949 original size:46 final size:46
Alignment explanation
Indices: 91788780--91789043 Score: 205
Period size: 47 Copynumber: 5.6 Consensus size: 46
91788770 TTATTTGGCT
* * *
91788780 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * * *
91788826 AGTGTAAGACCATGTCTGGGACATGGCGTCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
91788874 AGTGTAAGACATGTCTGGGATATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * * *
91788920 AGTGTAAGACATGTCTAGGACATGCATCGG-GTAAGAGATG-GTAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAG-AGCC
* * * * *
91788966 AGTGTAAGACCATGTCTGAGACATGGCATC-GACTTGAGATGTGAACC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
* * *
91789013 AGTATAAGGCCATGTCTGGGATATGGCATCG
1 AGTGTAA-GACATGTCTGGGACAT-GCATCG
91789044 ACACTTTACC
Statistics
Matches: 174, Mismatches: 31, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 70 0.40
47 73 0.42
48 29 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:91789005 original size:47 final size:47
Alignment explanation
Indices: 91788822--91789045 Score: 210
Period size: 47 Copynumber: 4.8 Consensus size: 47
91788812 ACATTATGAG
* *
91788822 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACATTGAGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATGTA
* * * *
91788869 GAGCTAGTGTAAGA-CATGTCTGGGATAT-GCATCGGCCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATGTA
* ** *
91788916 AGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGGTAAGAGATGGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGAT-GTA
* *
91788962 AGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGT-A
* * *
91789010 A-CCAGTATAAGGCCATGTCTGGGATATGGCATCGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
91789046 ACTTTACCTA
Statistics
Matches: 145, Mismatches: 23, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
45 2 0.01
46 58 0.40
47 65 0.45
48 20 0.14
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTA
Found at i:91789005 original size:93 final size:94
Alignment explanation
Indices: 91788874--91789043 Score: 213
Period size: 93 Copynumber: 1.8 Consensus size: 94
91788864 GACGAGAGCT
* * * *
91788874 AGTGTAAGACATGTCTGGGATATGCATCGGCCTCGAGATGT-AAGCCAGTGTAA-GACATGTCTA
1 AGTGTAAGACATGTCTGAGACATGCATCGGACTCGAGATGTGAA-CCAGTATAAGGACATGTCTA
91788937 GGACAT-GCATCGGGTAAGAGATGGTAGTC
65 GGACATGGCATCGGGTAAGAGATGGTAGTC
* *
91788966 AGTGTAAGACCATGTCTGAGACATGGCATC-GACTTGAGATGTGAACCAGTATAAGGCCATGTCT
1 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGACTCGAGATGTGAACCAGTATAAGGACATGTCT
* *
91789030 GGGATATGGCATCG
64 AGGACATGGCATCG
91789044 ACACTTTACC
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
92 9 0.14
93 30 0.46
94 20 0.31
95 6 0.09
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGACTCGAGATGTGAACCAGTATAAGGACATGTCTAG
GACATGGCATCGGGTAAGAGATGGTAGTC
Found at i:91790848 original size:30 final size:30
Alignment explanation
Indices: 91790813--91790896 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
91790803 TAGGCACATC
* *
91790813 CACACGGGTAAACCACACGCCCGTGTGAA-G
1 CACACGGGTAGACCACACGCCCATGT-AAGG
* *
91790843 CACACGAGTAGACCACATGCCCATGTAAGG
1 CACACGGGTAGACCACACGCCCATGTAAGG
*
91790873 CACACGGGCAGACCACACGCCCAT
1 CACACGGGTAGACCACACGCCCAT
91790897 ATGTCATGGC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
29 2 0.04
30 44 0.96
ACGTcount: A:0.31, C:0.36, G:0.24, T:0.10
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCATGTAAGG
Found at i:91795759 original size:18 final size:17
Alignment explanation
Indices: 91795707--91795772 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 17
91795697 TCTTTATTTC
* *
91795707 ATTTATTTTTATTCTTAA
1 ATTTATTTTTGTTCTT-T
**
91795725 ATTTTATTTTT-CACTTT
1 A-TTTATTTTTGTTCTTT
*
91795742 ATTTCTATTTTGTTCTTT
1 ATTTAT-TTTTGTTCTTT
91795760 ATTTATTTTTGTT
1 ATTTATTTTTGTT
91795773 TATTTTCTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
16 4 0.11
17 12 0.32
18 13 0.34
19 9 0.24
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTATTTTTGTTCTTT
Found at i:91796049 original size:14 final size:15
Alignment explanation
Indices: 91796030--91796061 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
91796020 TCCTTTGTCA
91796030 TTTGATTTTT-CACT
1 TTTGATTTTTGCACT
91796044 TTTGATTTTTGCACT
1 TTTGATTTTTGCACT
91796059 TTT
1 TTT
91796062 TTAATATTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.12, C:0.12, G:0.09, T:0.66
Consensus pattern (15 bp):
TTTGATTTTTGCACT
Found at i:91798418 original size:4 final size:4
Alignment explanation
Indices: 91798409--91798961 Score: 710
Period size: 4 Copynumber: 138.2 Consensus size: 4
91798399 TCTTAAAAAC
*
91798409 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACGT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
91798457 ACCT ACAT ACGT ACAT ACGT ATAT ACAT ACAT ACAT ACAT ACAT ACGT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * ** * * *
91798505 ACGT ACAT ATAT ACGT ACAT ATGT ACGT ACAT ACGT ACGT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
91798553 ACAT ACAT ACAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * ** * * *
91798601 ACAT ACAT ACGT ACAT ACAT ACGT ATGT ACAT ACAT ACGT ACGT ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
91798649 ACGT ACAT ACAT ACGT ACAT ACAT ACAT ACGT ACGT ACAT ACGT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* ** *
91798697 ACAT ACGT ACAT ACAT ACAT ACAT ACAT ATGT ACAT ACAT ACAT ACGT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
91798745 ACAT ACAT ACAT ACAT ACAT ACAT ACGT ACGT ACGT ACAT ACGT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
91798793 ACAT ACAT ACAT ACAT ACGT ACAT ACAT ACGT ACAT ACAT ACGT ACGT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
91798841 ACAT ACGT ACAT ACAT ACAT ACAT ACAT ACAT ACGT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
91798889 ACAT ATAT ACAT ACAT ACAT ACAT ACAT ATAT ACGT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
91798937 ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
91798962 TTGGTAGTAA
Statistics
Matches: 479, Mismatches: 70, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 479 1.00
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:91807152 original size:5 final size:5
Alignment explanation
Indices: 91807142--91807169 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
91807132 TTGTGTGTTC
91807142 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
91807170 TCACAATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:91822082 original size:52 final size:48
Alignment explanation
Indices: 91821962--91822095 Score: 133
Period size: 49 Copynumber: 2.7 Consensus size: 48
91821952 ATAAGTTACC
* * *
91821962 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATTGAGGCT
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTATCGTCATTCAGACT
* * * *
91822011 GATGCCATATCCTAGACATGGTCTTACACTAGCTCTCGTATATATACATACT
1 GATGCCATGTCC-AGACATGGTCTTACACTAGCTATCGT-CAT-T-CAGACT
* *
91822063 GATGCCATGTCTCAGACATGGCCTTATACTAGC
1 GATGCCATGTC-CAGACATGGTCTTACACTAGC
91822096 ACAACTCTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
48 2 0.03
49 33 0.47
50 2 0.03
51 1 0.01
52 31 0.44
53 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCAGACATGGTCTTACACTAGCTATCGTCATTCAGACT
Found at i:91822211 original size:47 final size:47
Alignment explanation
Indices: 91821960--91822274 Score: 170
Period size: 47 Copynumber: 6.6 Consensus size: 47
91821950 GGATAAGTTA
* * *
91821960 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCGTCATTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCGTC--TAATG
* * * * * *
91822009 CTGATGCCATATCCTAGACATGGTCTTACACTAGCTCTCGTATATATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTA-ATG
* * * * *
91822057 CATACTGATGCCATGTCTCAGACATGGCCTTATACTAGCACAAC-TCTTAT-
1 C---C-GATGCCATGTCCCAGACATGGTCTTACACTAGCAC-TCGTCTAATG
* * * * *
91822107 CCAATG-CATGTCCCAGACAT-GTCTTACATTGGCTA-TCATCATCAAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCGTC-T-AATG
* *
91822154 CCGAT-ACATGTCCTAGACAT-GTCTTACACTAGCACTCGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCT-AATG
* * *
91822200 CCGATGCCATGTCCCAAACATGGTCTTATACT-G-GCTC-TCATAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTC-TAA--T-G
91822248 CCGATG-CATGTCCCAGACAT-GTCTTAC
1 CCGATGCCATGTCCCAGACATGGTCTTAC
91822275 GCTGACACAC
Statistics
Matches: 205, Mismatches: 41, Indels: 43
0.71 0.14 0.15
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 19 0.09
46 25 0.12
47 61 0.30
48 18 0.09
49 35 0.17
50 1 0.00
51 2 0.01
52 31 0.15
53 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTAATG
Found at i:91834272 original size:49 final size:45
Alignment explanation
Indices: 91834200--91834328 Score: 147
Period size: 49 Copynumber: 2.8 Consensus size: 45
91834190 GATAAGTTGT
* * *
91834200 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TATCGTCTTCGAGGC
1 CGATGGCATGTCCCAGACATGGTCTTA-ACTGGCACAAC-TCTT--A-GC
*
91834249 CGATGGCATGTCCCAGACATGGTCTTATACTAGCACAACTCTTAGC
1 CGATGGCATGTCCCAGACATGGTCTTA-ACTGGCACAACTCTTAGC
91834295 CGAT-GCATGTCCCAGACAT-GTCTTAACTGGCACA
1 CGATGGCATGTCCCAGACATGGTCTTAACTGGCACA
91834329 CAAATAACCC
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
43 8 0.11
44 6 0.08
45 15 0.21
46 6 0.08
47 1 0.01
49 35 0.48
50 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (45 bp):
CGATGGCATGTCCCAGACATGGTCTTAACTGGCACAACTCTTAGC
Found at i:91838117 original size:39 final size:39
Alignment explanation
Indices: 91838063--91838141 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
91838053 ATTGGCTGTA
91838063 ATAGTCCAGAAGGCAACTGATGTTTAGCTTTTACTTGCT
1 ATAGTCCAGAAGGCAACTGATGTTTAGCTTTTACTTGCT
91838102 ATAGTCCAGAAGGCAACTGATGTTTAGCTTTTACTTGCT
1 ATAGTCCAGAAGGCAACTGATGTTTAGCTTTTACTTGCT
91838141 A
1 A
91838142 ACATAACAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (39 bp):
ATAGTCCAGAAGGCAACTGATGTTTAGCTTTTACTTGCT
Found at i:91847791 original size:30 final size:31
Alignment explanation
Indices: 91847748--91847833 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 31
91847738 ATATGGGCAT
91847748 TAAT-ATTCATATTTACATATGCATA-CCTA
1 TAATCATTCATATTTACATATGCATACCCTA
* * * *
91847777 TAATCATTCTTATTTGCATATTCATACCCTG
1 TAATCATTCATATTTACATATGCATACCCTA
* * *
91847808 TAATCATTTACATTTACCTAT-CATAC
1 TAATCATTCATATTTACATATGCATAC
91847834 ACTGTGTTCG
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 4 0.09
30 23 0.50
31 19 0.41
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.43
Consensus pattern (31 bp):
TAATCATTCATATTTACATATGCATACCCTA
Found at i:91854069 original size:77 final size:77
Alignment explanation
Indices: 91853941--91854098 Score: 289
Period size: 77 Copynumber: 2.1 Consensus size: 77
91853931 GCTAAGGCCC
*
91853941 TTGTGCATACTGATACTGATACTGAAAGGGGCTTAGGCCCAAGACTGTTTTTGACTGTGCACTAT
1 TTGTGCATACTGATACTGATACTGAAAGGGGCTTAGGCCCAAGACTATTTTTGACTGTGCACTAT
91854006 GTTTACTGTTGT
66 GTTTACTGTTGT
* *
91854018 TTGTGCATACTGATACTGATACTGAAAGGGGCTTAGGCCCAAGACTATTTTTTACTGTGCACTGT
1 TTGTGCATACTGATACTGATACTGAAAGGGGCTTAGGCCCAAGACTATTTTTGACTGTGCACTAT
91854083 GTTTACTGTTGT
66 GTTTACTGTTGT
91854095 TTGT
1 TTGT
91854099 TTTCTTTAGA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (77 bp):
TTGTGCATACTGATACTGATACTGAAAGGGGCTTAGGCCCAAGACTATTTTTGACTGTGCACTAT
GTTTACTGTTGT
Found at i:91860412 original size:22 final size:24
Alignment explanation
Indices: 91860384--91860427 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
91860374 ATTTTGTTGA
91860384 ACTTTAA-CTTTTAT-TCAAAAAC
1 ACTTTAATCTTTTATATCAAAAAC
*
91860406 ACTTTAATTTTTTATATCAAAA
1 ACTTTAATCTTTTATATCAAAA
91860428 CATAATATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 6 0.32
24 6 0.32
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (24 bp):
ACTTTAATCTTTTATATCAAAAAC
Found at i:91877660 original size:29 final size:29
Alignment explanation
Indices: 91877627--91877751 Score: 164
Period size: 29 Copynumber: 4.3 Consensus size: 29
91877617 GAAAGCATGT
91877627 ATATGAATGTAATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* *
91877656 ATATGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* *
91877685 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* *
91877714 ATATGAATG-AGA-TTGGGCCTAGTGGGCT
1 ATATGAATGTA-ATTTGGGCCTAATGGGCC
*
91877742 ATATGCATGT
1 ATATGAATGT
91877752 TTGTAGAATT
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
28 22 0.26
29 63 0.74
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (29 bp):
ATATGAATGTAATTTGGGCCTAATGGGCC
Found at i:91877702 original size:58 final size:57
Alignment explanation
Indices: 91877631--91877739 Score: 182
Period size: 58 Copynumber: 1.9 Consensus size: 57
91877621 GCATGTATAT
*
91877631 GAATGTAATTTGGGCCTAATGGGCCATATGAATGTGATTTGGGCCTAATGGGTCATAC
1 GAATGTAATTTGGGCCTAATGGGCCATATGAATGAGA-TTGGGCCTAATGGGTCATAC
* *
91877689 GAATGTGATTTGGGCCTAATGGGCCATATGAATGAGATTGGGCCTAGTGGG
1 GAATGTAATTTGGGCCTAATGGGCCATATGAATGAGATTGGGCCTAATGGG
91877740 CTATATGCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
57 13 0.27
58 35 0.73
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.29
Consensus pattern (57 bp):
GAATGTAATTTGGGCCTAATGGGCCATATGAATGAGATTGGGCCTAATGGGTCATAC
Found at i:91881456 original size:30 final size:30
Alignment explanation
Indices: 91881420--91881477 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
91881410 TCTAGAAATC
91881420 AAAGGAGAAAAACCAAGACCAAATCATCTT
1 AAAGGAGAAAAACCAAGACCAAATCATCTT
91881450 AAAGGAGAAAAACCAAGACCAAATCATC
1 AAAGGAGAAAAACCAAGACCAAATCATC
91881478 AAACTTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (30 bp):
AAAGGAGAAAAACCAAGACCAAATCATCTT
Found at i:91885655 original size:19 final size:19
Alignment explanation
Indices: 91885627--91885716 Score: 74
Period size: 19 Copynumber: 4.5 Consensus size: 19
91885617 CCTTTTTTAA
*
91885627 TTATTCATTTTAAACTATT
1 TTATTTATTTTAAACTATT
*
91885646 TTATTTATTTTAAAGTTTTTATAT
1 TTATTTATTTTAAA----CTAT-T
*
91885670 ATTATTCATTTTAAACTATT
1 -TTATTTATTTTAAACTATT
*
91885690 TTATTTATTTTAAAGT-TT
1 TTATTTATTTTAAACTATT
*
91885708 TTATATATT
1 TTATTTATT
91885717 ATTTATATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
18 10 0.17
19 27 0.47
20 1 0.02
21 3 0.05
23 3 0.05
24 1 0.02
25 13 0.22
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
TTATTTATTTTAAACTATT
Found at i:91885674 original size:44 final size:44
Alignment explanation
Indices: 91885619--91885744 Score: 211
Period size: 44 Copynumber: 2.9 Consensus size: 44
91885609 ATTTTAACCC
91885619 TTTTT-TA-ATTATTCATTTTAAACTATTTTATTTATTTTAAAG
1 TTTTTATATATTATTCATTTTAAACTATTTTATTTATTTTAAAG
91885661 TTTTTATATATTATTCATTTTAAACTATTTTATTTATTTTAAAG
1 TTTTTATATATTATTCATTTTAAACTATTTTATTTATTTTAAAG
* *
91885705 TTTTTATATATTATTTATATTAAACTATTTTATATTATTT
1 TTTTTATATATTATTCATTTTAAACTATTTTAT-TTATTT
91885745 ATTTTAAATT
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
42 5 0.06
43 2 0.03
44 66 0.84
45 6 0.08
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (44 bp):
TTTTTATATATTATTCATTTTAAACTATTTTATTTATTTTAAAG
Found at i:91885820 original size:52 final size:51
Alignment explanation
Indices: 91885690--91885956 Score: 197
Period size: 52 Copynumber: 5.2 Consensus size: 51
91885680 TTAAACTATT
* *
91885690 TTATTTATTTTAAAGTTTTTATATATTATTTATATTAAACTATTT--TATA
1 TTATTTATTTTAAAGTTTTTATATATTATTTATTTTAAACTGTTTCATATA
* * *
91885739 TTATTTATTTTAAATTTTTTTAGATATTATTTATTTTAAATTGTTTCATATA
1 TTATTTATTTTAAA-GTTTTTATATATTATTTATTTTAAACTGTTTCATATA
** * *
91885791 TTATTTATTTTGGAGTACTTTATACATTATTTTATTTTAAAACTGTTTCATAAATA
1 TTATTTATTTTAAAGT-TTTTATATATTA-TTTATTTT-AAACTGTTTCAT--ATA
* ** * * * *
91885847 TTTTTTATTTT-ATTTTTTTACATATTATTTCTTTAAAAAAATGCTTT-ATATA
1 TTATTTATTTTAAAGTTTTTATATATTATTTATTT--TAAACTG-TTTCATATA
* * ** *
91885899 TTATTTATTTTAAA-TTGCTTTAGAT-TT-TTTATTTCAAACTGTTTTGTATT
1 TTATTTATTTTAAAGTT--TTTATATATTATTTATTTTAAACTGTTTCATATA
91885949 TTATTTAT
1 TTATTTAT
91885957 GTTAGTTTTT
Statistics
Matches: 173, Mismatches: 30, Indels: 29
0.75 0.13 0.12
Matches are distributed among these distances:
49 17 0.10
50 42 0.24
51 1 0.01
52 46 0.27
53 17 0.10
54 33 0.19
55 4 0.02
56 13 0.08
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (51 bp):
TTATTTATTTTAAAGTTTTTATATATTATTTATTTTAAACTGTTTCATATA
Found at i:91885876 original size:54 final size:52
Alignment explanation
Indices: 91885690--91885968 Score: 173
Period size: 50 Copynumber: 5.4 Consensus size: 52
91885680 TTAAACTATT
** * * *
91885690 TTATTTATTTTAAAGTTTTTATATATTA-TTTATATTAAACTATTT--TATA
1 TTATTTATTTTAATTTTTTTACATATTATTTTATTTTAAACTGTTTCATATA
* *
91885739 TTATTTATTTTAAATTTTTTTAGATATTA-TTTATTTTAAATTGTTTCATATA
1 TTATTTATTTT-AATTTTTTTACATATTATTTTATTTTAAACTGTTTCATATA
* * ** * *
91885791 TTATTTATTTTGGAGTACTTTATACATTATTTTATTTTAAAACTGTTTCATAAATA
1 TTATTTATTTT-AATTTTTTTACATATTATTTTATTTT-AAACTGTTTCAT--ATA
* ** *
91885847 TTTTTTATTTT-ATTTTTTTACATATTATTTCT-TTAAAAAAATGCTTT-ATATA
1 TTATTTATTTTAATTTTTTTACATATTATTT-TATT-TTAAACTG-TTTCATATA
** * * ** *
91885899 TTATTTATTTTAAATTGCTTT--AGATT-TTTTATTTCAAACTGTTTTGTATT
1 TTATTTATTTT-AATTTTTTTACATATTATTTTATTTTAAACTGTTTCATATA
* *
91885949 TTATTTATGTTAGTTTTTTT
1 TTATTTATTTTAATTTTTTT
91885969 GTTTTCATAT
Statistics
Matches: 180, Mismatches: 36, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
49 20 0.11
50 47 0.26
51 5 0.03
52 43 0.24
53 8 0.04
54 40 0.22
55 4 0.02
56 13 0.07
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.61
Consensus pattern (52 bp):
TTATTTATTTTAATTTTTTTACATATTATTTTATTTTAAACTGTTTCATATA
Found at i:91885917 original size:26 final size:25
Alignment explanation
Indices: 91885690--91885956 Score: 166
Period size: 26 Copynumber: 10.3 Consensus size: 25
91885680 TTAAACTATT
91885690 TTATTTATTTTAAAGTT-TTTATATA
1 TTATTTATTTTAAA-TTGTTTATATA
* * *
91885715 TTATTTATATTAAACTATTT-TATA
1 TTATTTATTTTAAATTGTTTATATA
* *
91885739 TTATTTATTTTAAATTTTTTTAGATA
1 TTATTTATTTTAAA-TTGTTTATATA
91885765 TTATTTATTTTAAATTGTTTCATATA
1 TTATTTATTTTAAATTGTTT-ATATA
* * ** *
91885791 TTATTTATTTTGGAGTACTTTATACA
1 TTATTTATTTT-AAATTGTTTATATA
*
91885817 TTATTTTATTTTAAAACTGTTTCATAAATA
1 TTA-TTTATTTT-AAATTGTTT-AT--ATA
* * * *
91885847 TTTTTTATTTT-ATTTTTTTACATA
1 TTATTTATTTTAAATTGTTTATATA
* * *
91885871 TTATTTCTTTAAAAAAATGCTTTATATA
1 TTATTTATTT--TAAATTG-TTTATATA
*
91885899 TTATTTATTTTAAATTGCTTTAGAT-
1 TTATTTATTTTAAATTG-TTTATATA
* * * *
91885924 TT-TTTATTTCAAACTGTTTTGTATT
1 TTATTTATTTTAAATTG-TTTATATA
91885949 TTATTTAT
1 TTATTTAT
91885957 GTTAGTTTTT
Statistics
Matches: 186, Mismatches: 41, Indels: 29
0.73 0.16 0.11
Matches are distributed among these distances:
24 46 0.25
25 29 0.16
26 57 0.31
27 24 0.13
28 18 0.10
29 8 0.04
30 4 0.02
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (25 bp):
TTATTTATTTTAAATTGTTTATATA
Found at i:91899800 original size:15 final size:15
Alignment explanation
Indices: 91899780--91899813 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
91899770 AATATTTTGA
91899780 TAATAAAATCATAGG
1 TAATAAAATCATAGG
91899795 TAATAAAATCATAGG
1 TAATAAAATCATAGG
91899810 TAAT
1 TAAT
91899814 CTTCTTCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (15 bp):
TAATAAAATCATAGG
Found at i:91901326 original size:6 final size:6
Alignment explanation
Indices: 91901301--91901343 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
91901291 AAAAGAAAAT
* *
91901301 AATAAA AAT-GA AATAAA AATATA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AA
91901344 GATAGGACGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:91907061 original size:282 final size:282
Alignment explanation
Indices: 91906551--91907113 Score: 1027
Period size: 282 Copynumber: 2.0 Consensus size: 282
91906541 CCATAAGGAT
**
91906551 GTTTGTTGAACACATGGTAATAGTTTTACAATGGCCAGGAAAATTATGAGATTTAGGTATTATTG
1 GTTTGTTGAACACATACTAATAGTTTTACAATGGCCAGGAAAATTATGAGATTTAGGTATTATTG
91906616 GTCCACCATGGAAGGGGATTGTACAAATTATGCCAAGAGATGTCATAAGTGCCAAATTTATGGAG
66 GTCCACCATGGAAGGGGATTGTACAAATTATGCCAAGAGATGTCATAAGTGCCAAATTTATGGAG
* *
91906681 ACAAAATTCATGTGTCTCATTTACCTCTTCATGTTATGACTTCTCCATGGCCTTTCTCTATGTGG
131 ACAAAATTCATGTGTCTCATTTACCTCTTCACGTTATGACTTCTCCATGGCCTTTCTCTATGTAG
* * *
91906746 GGCATAGACGTGATTGGACCAATATTTCCAAAAGATTCCAATGGGCATCGATTCATCTTTCTGGT
196 GGCATAGACGTGATTGGACCAATATTGCCAAAAGATTCCAATGGGCATCAATTCATCTTTCTGAT
91906811 CATCAATTACTTCACCAAGTGC
261 CATCAATTACTTCACCAAGTGC
91906833 GTTTGTTGAACACATACTAATAGTTTTACAATGGCCAGGAAAATTATGAGATTTAGGTATTATTG
1 GTTTGTTGAACACATACTAATAGTTTTACAATGGCCAGGAAAATTATGAGATTTAGGTATTATTG
91906898 GTCCACCATGGAAGGGGATTGTACAAATTATGCCAAGAGATGTCATAAGTGCCAAATTTATGGAG
66 GTCCACCATGGAAGGGGATTGTACAAATTATGCCAAGAGATGTCATAAGTGCCAAATTTATGGAG
91906963 ACAAAATTCATGTGTCTCATTTACCTCTTCACGTTATGACTTCTCCATGGCCTTTCTCTATGTAG
131 ACAAAATTCATGTGTCTCATTTACCTCTTCACGTTATGACTTCTCCATGGCCTTTCTCTATGTAG
* * *
91907028 GGCATGGACGTGATTGGGCCAATATTGCCAAAAGCTTCCAATGGGCATCAATTCATCTTTCTGAT
196 GGCATAGACGTGATTGGACCAATATTGCCAAAAGATTCCAATGGGCATCAATTCATCTTTCTGAT
*
91907093 CATCGATTACTTCACCAAGTG
261 CATCAATTACTTCACCAAGTG
91907114 GGTAGAAGTC
Statistics
Matches: 270, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
282 270 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (282 bp):
GTTTGTTGAACACATACTAATAGTTTTACAATGGCCAGGAAAATTATGAGATTTAGGTATTATTG
GTCCACCATGGAAGGGGATTGTACAAATTATGCCAAGAGATGTCATAAGTGCCAAATTTATGGAG
ACAAAATTCATGTGTCTCATTTACCTCTTCACGTTATGACTTCTCCATGGCCTTTCTCTATGTAG
GGCATAGACGTGATTGGACCAATATTGCCAAAAGATTCCAATGGGCATCAATTCATCTTTCTGAT
CATCAATTACTTCACCAAGTGC
Found at i:91909697 original size:6 final size:6
Alignment explanation
Indices: 91909686--91909744 Score: 109
Period size: 6 Copynumber: 9.7 Consensus size: 6
91909676 TTTTATTCTG
91909686 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
91909734 TTTTTTA TTTT
1 -TTTTTA TTTT
91909745 GGAATACTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 46 0.88
7 6 0.12
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:91915723 original size:48 final size:48
Alignment explanation
Indices: 91915652--91915836 Score: 212
Period size: 48 Copynumber: 3.9 Consensus size: 48
91915642 TACTTAAGAG
* * * *
91915652 TCTCGCACACTAAGTGCCAATATCATGGCTCGAAGCCAATTCAATAAA
1 TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAA
* * *
91915700 TCTCGCACCCGAAGTGCTAATATCATGGCCCGTAGCCAAATCAATGAA
1 TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAA
* *
91915748 GCTCGCACCTGAAGTGCCAATATCATGGCCCGAAGCCAAATCAA-AGTAA
1 TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATA--AA
* * * * *
91915797 -CTCACACCCGAAGTTCTAATATCATGGCTCGTAGCCAAAT
1 TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAAT
91915837 AAATGTATTC
Statistics
Matches: 117, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
48 115 0.98
49 2 0.02
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (48 bp):
TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAA
Found at i:91915774 original size:96 final size:95
Alignment explanation
Indices: 91915653--91915841 Score: 274
Period size: 96 Copynumber: 2.0 Consensus size: 95
91915643 ACTTAAGAGT
* * *
91915653 CTCGCACACTAAGTGCCAATATCATGGCTCGAAGCCAATTCAATA-AATCTCGCACCCGAAGTGC
1 CTCGCACACTAAGTGCCAATATCATGGCCCGAAGCCAAATCAA-AGAA-CTCACACCCGAAGTGC
*
91915717 TAATATCATGGCCCGTAGCCAAATCAATGAAG
64 TAATATCATGGCCCGTAGCCAAATAAATGAAG
*
91915749 CTCGCAC-CTGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAACTCACACCCGAAGTTC
1 CTCGCACACT-AAGTGCCAATATCATGGCCCGAAGCCAAATCAAAG-AACTCACACCCGAAGTGC
*
91915813 TAATATCATGGCTCGTAGCCAAATAAATG
64 TAATATCATGGCCCGTAGCCAAATAAATG
91915842 TATTCCCTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
95 3 0.04
96 79 0.94
97 2 0.02
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (95 bp):
CTCGCACACTAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGAACTCACACCCGAAGTGCTA
ATATCATGGCCCGTAGCCAAATAAATGAAG
Found at i:91916416 original size:20 final size:20
Alignment explanation
Indices: 91916386--91916434 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
91916376 TCACTTAACA
91916386 AAACTTGCAT-ATCTATCAAC
1 AAACTT-CATAATCTATCAAC
*
91916406 AAACATTCATAATCTATCAAG
1 AAAC-TTCATAATCTATCAAC
91916427 AAACTTCA
1 AAACTTCA
91916435 AAATACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.45, C:0.22, G:0.04, T:0.29
Consensus pattern (20 bp):
AAACTTCATAATCTATCAAC
Found at i:91923521 original size:12 final size:12
Alignment explanation
Indices: 91923504--91923529 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91923494 TAATACTCAA
91923504 ATCTATATATAT
1 ATCTATATATAT
91923516 ATCTATATATAT
1 ATCTATATATAT
91923528 AT
1 AT
91923530 ATTGCTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (12 bp):
ATCTATATATAT
Found at i:91926134 original size:21 final size:21
Alignment explanation
Indices: 91926108--91926151 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
91926098 GGCGAAAAAT
*
91926108 GGCCGTGTGATCAACAAGTCA
1 GGCCGTGTGATCAACAAGCCA
91926129 GGCCGTGTGATCAACAAGCCA
1 GGCCGTGTGATCAACAAGCCA
91926150 GG
1 GG
91926152 TCGTATGCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.32, T:0.16
Consensus pattern (21 bp):
GGCCGTGTGATCAACAAGCCA
Found at i:91926701 original size:40 final size:40
Alignment explanation
Indices: 91926636--91926714 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
91926626 ATACGATAGC
*
91926636 ACTTGGTGTGTAGGGTTGGAGGGGTTGATTTCATCCCCAA
1 ACTTGGTGTGTAGGGCTGGAGGGGTTGATTTCATCCCCAA
*
91926676 ACTTGGTGTGTAGGGCTGG-GTGGGTTGATTTTATCCCCA
1 ACTTGGTGTGTAGGGCTGGAG-GGGTTGATTTCATCCCCA
91926715 CATGGTGTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 35 0.97
ACGTcount: A:0.15, C:0.15, G:0.35, T:0.34
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGAGGGGTTGATTTCATCCCCAA
Found at i:91933403 original size:17 final size:18
Alignment explanation
Indices: 91933381--91933420 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
91933371 CAAATGGCCA
*
91933381 GTGTGGG-CCTCACGAGC
1 GTGTGGGCCCACACGAGC
*
91933398 GTGTGGGCCCACACGGGC
1 GTGTGGGCCCACACGAGC
91933416 GTGTG
1 GTGTG
91933421 AGAATCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.10, C:0.28, G:0.45, T:0.17
Consensus pattern (18 bp):
GTGTGGGCCCACACGAGC
Found at i:91933900 original size:40 final size:40
Alignment explanation
Indices: 91933836--91933913 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
91933826 TACGGTACCA
*
91933836 CTTGGTGTGTAGGGTTGGAAGGGTTGATTTCATCCCCATT
1 CTTGGTGTGTAGGGCTGGAAGGGTTGATTTCATCCCCATT
** *
91933876 CTTGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCCCA
1 CTTGGTGTGTAGGGCTGGAAGGGTTGATTTCATCCCCA
91933914 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.13, C:0.15, G:0.35, T:0.37
Consensus pattern (40 bp):
CTTGGTGTGTAGGGCTGGAAGGGTTGATTTCATCCCCATT
Found at i:91935585 original size:14 final size:15
Alignment explanation
Indices: 91935568--91935596 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91935558 GAGTATGGTA
91935568 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
91935582 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
91935597 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:91940812 original size:294 final size:294
Alignment explanation
Indices: 91940216--91940902 Score: 675
Period size: 293 Copynumber: 2.3 Consensus size: 294
91940206 TTATGCAAGT
* * * *
91940216 TTTATTACTTCCATCAATTATACCTATACTATATATTAATTGTTTTATTGAGTAGGTGTCACCCT
1 TTTATTA-TTCCATCAATTATACATATACTATATATTAAGTGTTTTACTGAGTAGGTATCACCCT
* * * * *
91940281 CAATCGAGTCACCAATTCATTTAGAAAAATTATGGAAACATATTTTTATAATTAAAGTAAGTTAT
65 CAACCGAGTCACCAACTCAGTTAGAAAAATTATGGAAACATATTTTCATAATTAAAGTAAATTAT
* * * * *
91940346 ACTATTTGAGGTTATTTTAGTATTTTTATTTTAACACAAACCAATAAAAATATACATTTGTTGAG
130 ACTAATCGAGGATATTTTAGTATTTTTATTTTAACACAAAACAATAAAAATATACATTTGTAGAG
* ** * * * * * * **
91940411 ATTTGAAACCGCAATGATTGGATTAGTAAATTCTTAAATTTACCACTCAACGAGATCTTCATTCT
195 ATTTGAAACCACAACAATTGAAGTAATAAATACTTAAATTTACCACTCAACCAAAGATTCATTCT
* ** *
91940476 AATTAATTTTGTAATTTTTATTTTAATATGCACAA
260 AATAAATTTTACAATTTTTATTTGAATATGCACAA
* * *
91940511 TTTATTATTCCATCAATTGTATATATGTACTATTTATTAAGTGTTTTACTGAGTTA-GTATCACC
1 TTTATTATTCCATCAA-T-TATACATATACTATATATTAAGTGTTTTACTGAG-TAGGTATCACC
* * *
91940575 CTCAACCTG-GTCATCAACTCGAGTTAGGAAAATTATGG-AA-ATATTTTCATAATTAAATTAAA
63 CTCAACC-GAGTCACCAACTC-AGTTAGAAAAATTATGGAAACATATTTTCATAATTAAAGTAAA
*
91940637 TTATACTAATCGAGGATATTTTAGT-TTTTTCA-TTTAA-A-AAAATAATAAAAATATACATTTG
126 TTATACTAATCGAGGATATTTTAGTATTTTT-ATTTTAACACAAAACAATAAAAATATACATTT-
* *
91940698 GTAG-GATTTGAAACCAACACCAATTGAAGTAATAAA-ACATTTAATTTACCACTCAACCAAAGA
189 GTAGAGATTTGAAACC-ACAACAATTGAAGTAATAAATAC-TTAAATTTACCACTCAACCAAAGA
*
91940761 TTCATTTTAATAAATTTTACATATTTTTATTTGAATATGCACAA
252 TTCATTCTAATAAATTTTACA-ATTTTTATTTGAATATGCACAA
* * * * *
91940805 TTTATTA-T-C-TCAA--ATAGCTGTATAACTATACTATTTGAAGTGTTTTATTGAGTTGATGTC
1 TTTATTATTCCATCAATTATA-C-ATAT-ACTATA-TA-TT-AAGTGTTTTACTGAGTAGGTATC
* * * **
91940865 ACCCTCAATCAAGTCACTAACTCAGTTAGGCAAATTAT
60 ACCCTCAACCGAGTCACCAACTCAGTTAGAAAAATTAT
91940903 AAAAATGACC
Statistics
Matches: 322, Mismatches: 52, Indels: 39
0.78 0.13 0.09
Matches are distributed among these distances:
287 3 0.01
289 2 0.01
290 5 0.02
291 6 0.02
292 50 0.16
293 89 0.28
294 47 0.15
295 50 0.16
296 52 0.16
297 18 0.06
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.40
Consensus pattern (294 bp):
TTTATTATTCCATCAATTATACATATACTATATATTAAGTGTTTTACTGAGTAGGTATCACCCTC
AACCGAGTCACCAACTCAGTTAGAAAAATTATGGAAACATATTTTCATAATTAAAGTAAATTATA
CTAATCGAGGATATTTTAGTATTTTTATTTTAACACAAAACAATAAAAATATACATTTGTAGAGA
TTTGAAACCACAACAATTGAAGTAATAAATACTTAAATTTACCACTCAACCAAAGATTCATTCTA
ATAAATTTTACAATTTTTATTTGAATATGCACAA
Found at i:91942271 original size:22 final size:22
Alignment explanation
Indices: 91942243--91942297 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
91942233 AACTTAATTT
91942243 ATTGAATGTAATACATTTACTA
1 ATTGAATGTAATACATTTACTA
91942265 ATTGAATGTAATACATTTACTA
1 ATTGAATGTAATACATTTACTA
91942287 ATTGAATGTAA
1 ATTGAATGTAA
91942298 AGGAGCTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (22 bp):
ATTGAATGTAATACATTTACTA
Found at i:91952540 original size:11 final size:12
Alignment explanation
Indices: 91952520--91952544 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91952510 GTGCTGGTAC
91952520 AAAAGAAAAAAA
1 AAAAGAAAAAAA
91952532 AAAAGAAAAAAA
1 AAAAGAAAAAAA
91952544 A
1 A
91952545 GGTTGTTGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:91955887 original size:16 final size:17
Alignment explanation
Indices: 91955861--91955893 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
91955851 TTTAATTAGA
*
91955861 TAAATTAATTTTTCAAT
1 TAAATTAATTTTCCAAT
91955878 TAAA-TAATTTTCCAAT
1 TAAATTAATTTTCCAAT
91955894 CTAATTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATTAATTTTCCAAT
Found at i:91959351 original size:22 final size:22
Alignment explanation
Indices: 91959307--91959352 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
91959297 TTAAAAAGAA
91959307 TTATAATTTGATTATTAAATTAT
1 TTATAATTT-ATTATTAAATTAT
*
91959330 TTATAATTT-TTATTTAAGTTAT
1 TTATAATTTATTA-TTAAATTAT
91959352 T
1 T
91959353 AAAATATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 3 0.14
22 9 0.43
23 9 0.43
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
TTATAATTTATTATTAAATTAT
Found at i:91965408 original size:60 final size:57
Alignment explanation
Indices: 91965318--91965437 Score: 168
Period size: 60 Copynumber: 2.1 Consensus size: 57
91965308 TTAATATTTC
* * *
91965318 TATGGAGATTACTTTATATAATGCTAAGATTACACCACAAGAAAGAACATGCCATGT
1 TATGGAGATTAATTTATATAATGCTAAGATTACACCAAAAGAAAGAACATACCATGT
* *
91965375 TATGGAGATTAATATTATCTATTATGCTAAGATTACACCAAAAGAAAGAGCATACCATGT
1 TATGGAGATTAAT-TTA--TATAATGCTAAGATTACACCAAAAGAAAGAACATACCATGT
91965435 TAT
1 TAT
91965438 TTAGATTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
57 12 0.22
58 3 0.05
60 40 0.73
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (57 bp):
TATGGAGATTAATTTATATAATGCTAAGATTACACCAAAAGAAAGAACATACCATGT
Found at i:91966823 original size:27 final size:26
Alignment explanation
Indices: 91966790--91966857 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 26
91966780 GTGAAAATCT
91966790 AATTA-AAAAATTTAAAATAAT-ATAA
1 AATTATAAAAATTTAAAATAATGA-AA
* *
91966815 AATTCTAAAAATATGAAAATAATGAAA
1 AATTATAAAAAT-TTAAAATAATGAAA
91966842 AATTATTAAAAATTTA
1 AATTA-TAAAAATTTA
91966858 GAAAATTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 4 0.11
26 6 0.17
27 17 0.49
28 8 0.23
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (26 bp):
AATTATAAAAATTTAAAATAATGAAA
Found at i:91966904 original size:17 final size:18
Alignment explanation
Indices: 91966871--91966908 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
91966861 AATTCAAAAG
*
91966871 ATATTTTTGTAATTTTAA
1 ATATTTTTGGAATTTTAA
91966889 ATATTTTTGGAA-TTTAA
1 ATATTTTTGGAATTTTAA
91966906 ATA
1 ATA
91966909 ATTATTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
ATATTTTTGGAATTTTAA
Found at i:91967814 original size:23 final size:23
Alignment explanation
Indices: 91967787--91967836 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
91967777 TGATCAAAAT
*
91967787 TAAAATT-TTAAAAGTACAAGAAC
1 TAAAATTGATAAAA-TACAAGAAC
*
91967810 TAAAATTGATAAAATACAAGTAC
1 TAAAATTGATAAAATACAAGAAC
91967833 TAAA
1 TAAA
91967837 TCCATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.26
Consensus pattern (23 bp):
TAAAATTGATAAAATACAAGAAC
Found at i:91969200 original size:34 final size:34
Alignment explanation
Indices: 91969162--91969230 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
91969152 TAAAATCATC
*
91969162 AATTAAGTGAAATAGTGAATCACCATGTATTTTT
1 AATTAAGTGAAATAGTGAACCACCATGTATTTTT
*
91969196 AATTAGGTGAAATAGTGAACCACCATGTATTTTT
1 AATTAAGTGAAATAGTGAACCACCATGTATTTTT
91969230 A
1 A
91969231 GTTTCTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (34 bp):
AATTAAGTGAAATAGTGAACCACCATGTATTTTT
Found at i:91975985 original size:46 final size:46
Alignment explanation
Indices: 91975918--91976185 Score: 199
Period size: 46 Copynumber: 5.8 Consensus size: 46
91975908 TGTAACCCGC
91975918 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
91975964 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * *
91976014 -C-TCA-CGAACTCAGACCCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * * **
91976057 CCATAAGTGAGCTCAGACTCAACTCAACGAGCTCGGATGCCTAGTAACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGT--TCGCAT
* * * * * * * * *
91976107 -C-TCA-CGAACTCGGACTTAACTCAATGAGTTCAGACGTCCGCGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
91976150 CCATAAGTGAACTCGGACTCAACTAAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
91976186 ATGCCCAAAT
Statistics
Matches: 169, Mismatches: 37, Indels: 32
0.71 0.16 0.13
Matches are distributed among these distances:
42 3 0.02
43 5 0.03
44 3 0.02
45 6 0.04
46 85 0.50
47 47 0.28
48 7 0.04
49 3 0.02
50 7 0.04
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:91976041 original size:47 final size:47
Alignment explanation
Indices: 91975972--91976130 Score: 157
Period size: 47 Copynumber: 3.4 Consensus size: 47
91975962 ATCCATAAGT
*
91975972 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * * *
91976019 GAACTCAGACCCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
* *
91976065 GAGCTCAGACTCAACTCAACGAGCTCGGATGCCTAGTAACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* *
91976112 GAACTCGGACTTAACTCAA
1 GAACTCAGACTCAACTCAA
91976131 TGAGTTCAGA
Statistics
Matches: 87, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 26 0.30
47 42 0.48
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:91976052 original size:93 final size:93
Alignment explanation
Indices: 91975926--91976190 Score: 404
Period size: 93 Copynumber: 2.8 Consensus size: 93
91975916 GCCCATAAGT
* *
91975926 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
91975991 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTAACATCTCAC
* * * *
91976019 GAACTCAGACCCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAGCTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91976084 CGAGCTCGGATGCCTAGTAACATCTCAC
66 CGAGCTCGGATGCCTAGTAACATCTCAC
* * * * * *
91976112 GAACTCGGACTTAACTCAATGAGTTCAGACGTCCGCGTCCATAAGTGAACTCGGACTCAACTAAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
91976177 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
91976191 CAAATATCCG
Statistics
Matches: 154, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 154 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTAACATCTCAC
Found at i:91979521 original size:30 final size:30
Alignment explanation
Indices: 91979487--91979547 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
91979477 TGGTAAAATG
91979487 TAAATTTATAATAACAAACTTAATTTGTTT
1 TAAATTTATAATAACAAACTTAATTTGTTT
91979517 TAAATTTATAATAACAAACTTAATTTGTTT
1 TAAATTTATAATAACAAACTTAATTTGTTT
91979547 T
1 T
91979548 TTAAAATGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.48
Consensus pattern (30 bp):
TAAATTTATAATAACAAACTTAATTTGTTT
Found at i:91980349 original size:39 final size:39
Alignment explanation
Indices: 91980302--91980441 Score: 217
Period size: 39 Copynumber: 3.6 Consensus size: 39
91980292 ATCGTGATCT
** * *
91980302 GAAGCCCGAAATCTAGCTGAAGCACATAAGTGCTAAACT
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
91980341 GCAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
91980380 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
91980419 GAAGCCCGGAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
91980442 TCATCAAAGC
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.36, C:0.24, G:0.26, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:91983831 original size:31 final size:31
Alignment explanation
Indices: 91983796--91983944 Score: 228
Period size: 31 Copynumber: 4.8 Consensus size: 31
91983786 CTTGTCACTT
*
91983796 GTAGCCGAAGCTACCA-TTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTT-TTCACTGATCAG
* *
91983827 GTAGCTGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
91983858 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
91983889 GTAGCCGGAGCTACCACTTTTCATTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
91983920 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
91983945 TGTCATTTGT
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
31 107 0.98
32 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:91984026 original size:50 final size:51
Alignment explanation
Indices: 91983920--91984048 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
91983910 CATTGATCAG
* * *
91983920 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
91983971 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
91984021 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
91984049 TTCCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:91985350 original size:39 final size:40
Alignment explanation
Indices: 91985305--91985405 Score: 127
Period size: 39 Copynumber: 2.6 Consensus size: 40
91985295 ATCGTGATCT
* *
91985305 GAAGCCCGAAA-TCTAGCTAAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAAGGCTAACTAAAGCACATAAGTGCTAAACG
* *
91985344 GCAGCCC-AAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAAGGCTAACTAAAGCACATAAGTGCTAAACG
* *
91985383 GAAGCCCG-GAGGCTAACTGAAGC
1 GAAGCCCGAAAGGCTAACTAAAGC
91985406 TCATCAGAGC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
38 3 0.06
39 51 0.94
ACGTcount: A:0.38, C:0.25, G:0.25, T:0.13
Consensus pattern (40 bp):
GAAGCCCGAAAGGCTAACTAAAGCACATAAGTGCTAAACG
Found at i:91985387 original size:21 final size:21
Alignment explanation
Indices: 91985324--91985387 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
91985314 AATCTAGCTA
91985324 AAGCACATAAGTGCTAAACGG
1 AAGCACATAAGTGCTAAACGG
* * *
91985345 CAGCCCA-AAG-GCT-AACTG
1 AAGCACATAAGTGCTAAACGG
91985363 AAGCACATAAGTGCTAAACGG
1 AAGCACATAAGTGCTAAACGG
91985384 AAGC
1 AAGC
91985388 CCGGAGGCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 9 0.26
19 6 0.18
20 6 0.18
21 13 0.38
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.12
Consensus pattern (21 bp):
AAGCACATAAGTGCTAAACGG
Found at i:91990270 original size:29 final size:29
Alignment explanation
Indices: 91990225--91990281 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
91990215 TGGCTTTTGG
*
91990225 CCCTTGGTGTGAGCCATGCAACTATAAAA
1 CCCTTGGTGTGAACCATGCAACTATAAAA
91990254 CCCTTGGTGTGAACCATGCAACTATAAA
1 CCCTTGGTGTGAACCATGCAACTATAAA
91990282 CCTGGAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (29 bp):
CCCTTGGTGTGAACCATGCAACTATAAAA
Found at i:91992777 original size:26 final size:28
Alignment explanation
Indices: 91992756--91992810 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
91992746 TGATTATTTT
*
91992756 TATATTATA-AAAAT-TAAAATTAATTA
1 TATATTAAATAAAATATAAAATTAATTA
91992782 TATATTAAATAAAATATAAAATATAATTA
1 TATATTAAATAAAATATAAAAT-TAATTA
91992811 AATTTCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 8 0.32
27 5 0.20
28 6 0.24
29 6 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
TATATTAAATAAAATATAAAATTAATTA
Found at i:91992820 original size:29 final size:27
Alignment explanation
Indices: 91992757--91992822 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 27
91992747 GATTATTTTT
* *
91992757 ATATTATA-AAAATTAAAATTAATTAT
1 ATATTAAATAAAATTAAAATTAATTAA
91992783 ATATTAAATAAAATATAAAATATAATTAA
1 ATATTAAATAAAAT-TAAAAT-TAATTAA
91992812 AT-TTCAAATAA
1 ATATT-AAATAA
91992823 TCGCAACTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 7 0.21
27 5 0.15
28 8 0.24
29 14 0.41
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
ATATTAAATAAAATTAAAATTAATTAA
Found at i:91995061 original size:59 final size:60
Alignment explanation
Indices: 91994966--91995089 Score: 155
Period size: 59 Copynumber: 2.1 Consensus size: 60
91994956 AGTCAGTCTT
* * * *
91994966 CTATTAGTAAATTTCTTTCTTGATCATCCTATTATG-AAAGTTACAAAAT-GATCACCCAA
1 CTATTAGTAAATTTCTTTCTTGATCACCCAACTATGAAAAGTCACAAAATAG-TCACCCAA
* *
91995025 CTATTAGTAAATTTC-TTCTTTGATCACCCAACTATGAAAAGTCATAAAATAGTCATCCAA
1 CTATTAGTAAATTTCTTTC-TTGATCACCCAACTATGAAAAGTCACAAAATAGTCACCCAA
91995085 CTATT
1 CTATT
91995090 CAATTTTGCC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
58 3 0.05
59 29 0.52
60 23 0.41
61 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (60 bp):
CTATTAGTAAATTTCTTTCTTGATCACCCAACTATGAAAAGTCACAAAATAGTCACCCAA
Found at i:92005923 original size:20 final size:20
Alignment explanation
Indices: 92005898--92005938 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
92005888 GAGGTTAAAA
*
92005898 TTTCTTTTGGGGGGTAAAGT
1 TTTCTTTTAGGGGGTAAAGT
92005918 TTTCTTTTAGGGGGTAAAGT
1 TTTCTTTTAGGGGGTAAAGT
92005938 T
1 T
92005939 GTAACGTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.05, G:0.32, T:0.46
Consensus pattern (20 bp):
TTTCTTTTAGGGGGTAAAGT
Found at i:92017242 original size:40 final size:40
Alignment explanation
Indices: 92017187--92017374 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
92017177 TAATTGAGGA
* *
92017187 TTATATCCGGGTTAAGTCCCGAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
92017227 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
92017267 TTATATCTGGGCTAAGTCCTGAAGGCATTCGTGCTGGTTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* ** * *
92017307 TTATATCCGGGCCAAGTTTCGAAGGCACTCGTACTGG-TG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
92017346 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
92017375 TGTGTTTGGA
Statistics
Matches: 131, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 26 0.20
40 105 0.80
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (40 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:92025142 original size:40 final size:40
Alignment explanation
Indices: 92025087--92025257 Score: 261
Period size: 40 Copynumber: 4.3 Consensus size: 40
92025077 TAATTGAGGA
*
92025087 TTATATCCGGGTTAAGTCCCAAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
* *
92025127 TTATATCCGGTTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
** *
92025167 TTATATCCGGGTTAAGTCCTGAAGGCATTCGTGCCGGTTG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
* * *
92025207 TTATATCTGGGCTAAGTCCTAAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
92025247 TTATATCCGGG
1 TTATATCCGGG
92025258 CCAAGTTCCG
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 120 1.00
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.35
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
Found at i:92025272 original size:40 final size:40
Alignment explanation
Indices: 92025087--92025299 Score: 243
Period size: 40 Copynumber: 5.3 Consensus size: 40
92025077 TAATTGAGGA
* * * *
92025087 TTATATCCGGGTTAAGTCCCAAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
** *
92025127 TTATATCCGGTTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
* *
92025167 TTATATCCGGGTTAAG-TCCTGAAGGCATTCGTGCCGGTTG
1 TTATATCCGGGCTAAGTTCC-GAAGGCATTCGTGCTGGTTG
* *
92025207 TTATATCTGGGCTAAG-TCCTAAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTTCC-GAAGGCATTCGTGCTGGTTG
* * * * *
92025247 TTATATCCGGGCCAAGTTCCGAAGGCACTCATACT-GATG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
92025286 TTATATCCGGGCTA
1 TTATATCCGGGCTA
92025300 TGTAACACCC
Statistics
Matches: 153, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 18 0.12
40 132 0.86
41 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.33
Consensus pattern (40 bp):
TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
Found at i:92026865 original size:40 final size:40
Alignment explanation
Indices: 92026682--92026851 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
92026672 TCCTCGTTCA
* * * * *
92026682 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
92026721 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
92026761 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
92026801 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
92026841 AAGGCCTTCGG
1 AATGCCTTCGG
92026852 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:92045940 original size:40 final size:40
Alignment explanation
Indices: 92045849--92046018 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
92045839 TCCTCGTTCA
* * * * *
92045849 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
92045888 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
92045928 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
92045968 AATGCCTTCGTGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
92046008 AAGGCCTTCGG
1 AATGCCTTCGG
92046019 ATCTTAGTCA
Statistics
Matches: 114, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 33 0.29
40 81 0.71
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:92053820 original size:40 final size:40
Alignment explanation
Indices: 92053729--92053951 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
92053719 TCCTCGTTCA
* * * * *
92053729 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
92053768 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
92053808 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
92053848 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
92053888 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
92053928 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92053952 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 36 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:92053960 original size:41 final size:41
Alignment explanation
Indices: 92053883--92053960 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
92053873 TTAGTATCTC
* * *
92053883 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
92053924 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
92053961 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:92063495 original size:26 final size:25
Alignment explanation
Indices: 92063457--92063506 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
92063447 ATTTAAAAAC
*
92063457 TAAAAATAACTAATTAGTTATAAAT
1 TAAAAATAACTAATTAGCTATAAAT
* *
92063482 TAAAAATCATCTAATTGGCTATAAA
1 TAAAAAT-AACTAATTAGCTATAAA
92063507 AAGAACTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.34
Consensus pattern (25 bp):
TAAAAATAACTAATTAGCTATAAAT
Found at i:92063574 original size:21 final size:22
Alignment explanation
Indices: 92063534--92063575 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
92063524 AAATTGGTTT
* *
92063534 ATTAAAATTGTAAAATATAACC
1 ATTAAAAATGTAAAACATAACC
92063556 ATTAAAAAT-TAAAACATAAC
1 ATTAAAAATGTAAAACATAAC
92063576 TAGTAAACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (22 bp):
ATTAAAAATGTAAAACATAACC
Found at i:92064594 original size:18 final size:17
Alignment explanation
Indices: 92064583--92064618 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
92064573 ATAAATATTA
92064583 GTTAAAAAATAAAAACT
1 GTTAAAAAATAAAAACT
*
92064600 GTTAAAAAAACAAAAACT
1 GTT-AAAAAATAAAAACT
92064618 G
1 G
92064619 ATGTGACACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.19
Consensus pattern (17 bp):
GTTAAAAAATAAAAACT
Found at i:92064676 original size:27 final size:27
Alignment explanation
Indices: 92064646--92064709 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
92064636 GGCATGTCAA
*
92064646 AGGCGGCACTAATGAAGCCTCTGGCAG
1 AGGCGGCACTAATGAAGCCTATGGCAG
* * * *
92064673 AGGCGGCACCAGTGAAGCCTATGTCAT
1 AGGCGGCACTAATGAAGCCTATGGCAG
92064700 AGGCGGCACT
1 AGGCGGCACT
92064710 TACACCCTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.25, C:0.27, G:0.33, T:0.16
Consensus pattern (27 bp):
AGGCGGCACTAATGAAGCCTATGGCAG
Found at i:92065290 original size:17 final size:17
Alignment explanation
Indices: 92065268--92065301 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
92065258 AGTGTCACAT
92065268 CAGTTTTTGTTTTTTAA
1 CAGTTTTTGTTTTTTAA
92065285 CAGTTTTTGTTTTTTAA
1 CAGTTTTTGTTTTTTAA
92065302 AACTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.12, T:0.65
Consensus pattern (17 bp):
CAGTTTTTGTTTTTTAA
Found at i:92065500 original size:18 final size:19
Alignment explanation
Indices: 92065477--92065512 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
92065467 GAGAATAGAA
92065477 GAGAAGAAAG-AAAGAAAG
1 GAGAAGAAAGAAAAGAAAG
92065495 GAGAAGAAAGAAAAGAAA
1 GAGAAGAAAGAAAAGAAA
92065513 AGGTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
GAGAAGAAAGAAAAGAAAG
Found at i:92072176 original size:32 final size:31
Alignment explanation
Indices: 92072140--92072219 Score: 76
Period size: 32 Copynumber: 2.5 Consensus size: 31
92072130 TGGCCTTTTG
92072140 TTTTTATTATTTATTTTATTTTTGGATTTTAT
1 TTTTTA-TATTTATTTTATTTTTGGATTTTAT
** *
92072172 TTTTTA-AAATATGCTATT-TTTTTGTATTTTAT
1 TTTTTATATTTAT--T-TTATTTTTGGATTTTAT
92072204 TTTTTATA-TTATTTTA
1 TTTTTATATTTATTTTA
92072220 GTACATAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
29 2 0.05
30 5 0.13
32 29 0.74
33 3 0.08
ACGTcount: A:0.23, C:0.01, G:0.05, T:0.71
Consensus pattern (31 bp):
TTTTTATATTTATTTTATTTTTGGATTTTAT
Found at i:92072216 original size:17 final size:17
Alignment explanation
Indices: 92072165--92072219 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
92072155 TTATTTTTGG
*
92072165 ATTTTATTTTTTAAAAT
1 ATTTTATTTTTTATAAT
** *
92072182 ATGCTATTTTTT-T-GT
1 ATTTTATTTTTTATAAT
*
92072197 ATTTTATTTTTTATATT
1 ATTTTATTTTTTATAAT
92072214 ATTTTA
1 ATTTTA
92072220 GTACATAATG
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
15 11 0.38
16 1 0.03
17 17 0.59
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (17 bp):
ATTTTATTTTTTATAAT
Found at i:92072287 original size:156 final size:153
Alignment explanation
Indices: 92071843--92072683 Score: 1138
Period size: 156 Copynumber: 5.5 Consensus size: 153
92071833 TATATTTTGG
*
92071843 TATTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTA
1 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTA
92071908 TTTTAGTAC-TAATGTTTCAAATGTATTATTTTAGTGTTTTTTTATATTAATTTAGTAAAAAACT
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG-TTTTTTATATTAATTTAGTAAAAAACT
* *
92071972 CTAATTTTGGCCGTTTG---TT-T
130 CTGATTTTGGCCCTTTGTTTTTAT
* *
92071992 T-TTTATTTTATTTTCGAATTTTATTTTTT-AAATATACTATTTTTGTATTTTATTTTTTAATAT
1 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA-TTTTT-ATAT
*
92072055 TATTTTAATACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTTTATATTAATTTAGTAAAAA
64 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG--TTTTTTATATTAATTTAGTAAAAA
*
92072120 ACTCT-AGTTTTGGCCTTTTGTTTTTAT
127 ACTCTGA-TTTTGGCCCTTTGTTTTTAT
* * *
92072147 TATTTATTTTATTTTTGGATTTTATTTTTTAAAATATGCTATTTTTTTGTATTTTATTTTTTATA
1 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTA--TTTTCGTATTTTA-TTTTTATA
92072212 TTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAA
63 TTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAA
92072277 CTCTGATTTTGG----TTGTTTTTATTT
128 CTCTGATTTTGGCCCTTTGTTTTTA--T
** * *
92072301 TATTTTATTTTATTTTTAGATTTTATTTATTAAATTATACTATTTTCGTATTTTATTTTTTTATA
1 TA-TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA--TTTTTATA
* * *
92072366 ATAATTTAGTACATAATGTTTCAAATGTATTATTTTTCGTGTTTTTTATATTAATTTAGTAAAAA
63 TTATTTTAGTACATAATGTTTCAAATGTATTA-TTTTAGTGTTTTTTATATTAATTTAGT-AAAA
*
92072431 AACTCTGATTTTCGCCCTTTGTTTTTAT
126 AACTCTGATTTTGGCCCTTTGTTTTTAT
* * * *
92072459 TATTTATTCTATTTTTGGATTTTATTTTTTTTAAATATCCTATTTTCGTATTTTATTTTTATATT
1 TATTTATTTTATTTTCGGATTTTA-TTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATT
* *
92072524 ATTTTAGTATATAATGTTTCAAATATATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACT
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACT
* *
92072589 CTGGTTTTGGCCCTTTGTTCTTA-
130 CTGATTTTGGCCCTTTGTTTTTAT
* *
92072612 T-TTT-TTTTATTTTCGTATTTTAATTTTTAAAA-ATAACCTATTTTCGTATTTTATTTTTATAT
1 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATAT-A-CTATTTTCGTATTTTATTTTTATAT
*
92072674 TATTTAAGTA
64 TATTTTAGTA
92072684 GAAAAATCCG
Statistics
Matches: 626, Mismatches: 39, Indels: 52
0.87 0.05 0.07
Matches are distributed among these distances:
147 22 0.04
148 31 0.05
149 17 0.03
150 36 0.06
151 91 0.15
152 12 0.02
153 13 0.02
154 72 0.12
155 89 0.14
156 114 0.18
157 30 0.05
158 71 0.11
159 19 0.03
160 9 0.01
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.60
Consensus pattern (153 bp):
TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACTC
TGATTTTGGCCCTTTGTTTTTAT
Found at i:92072487 original size:31 final size:31
Alignment explanation
Indices: 92072452--92072520 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
92072442 TCGCCCTTTG
** * *
92072452 TTTTTATTATTTATTCTATTTTTGGATTTTA
1 TTTTTATTAAATATCCTATTTTCGGATTTTA
* *
92072483 TTTTTTTTAAATATCCTATTTTCGTATTTTA
1 TTTTTATTAAATATCCTATTTTCGGATTTTA
92072514 TTTTTAT
1 TTTTTAT
92072521 ATTATTTTAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.70
Consensus pattern (31 bp):
TTTTTATTAAATATCCTATTTTCGGATTTTA
Found at i:92073568 original size:96 final size:98
Alignment explanation
Indices: 92073444--92073648 Score: 258
Period size: 96 Copynumber: 2.1 Consensus size: 98
92073434 ATTTTTAAAT
* * ** *
92073444 TTTAGGG-TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGTGTTTGTTAATTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
*
92073508 CT-AATTTT-AAAAAATTAGATTATGG-TTTAGTG
66 -TAAATTTTAAAAAAATTAGATTA-GGATTTAGGG
* * *
92073540 TTTATGGTTTTTAAGG-AAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
*
92073604 TAAATTTTAAAAAAATTATATTAGGACTTTAGGG
66 TAAATTTTAAAAAAATTAGATTAGGA-TTTAGGG
92073638 TTTAGGGTTTT
1 TTTAGGGTTTT
92073649 AGGGCATTTA
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
95 1 0.01
96 55 0.59
97 21 0.23
98 16 0.17
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (98 bp):
TTTAGGGTTTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
TAAATTTTAAAAAAATTAGATTAGGATTTAGGG
Found at i:92074105 original size:126 final size:126
Alignment explanation
Indices: 92073736--92074272 Score: 837
Period size: 126 Copynumber: 4.3 Consensus size: 126
92073726 AAAAACTTTT
* * *
92073736 ACGTGGACGTTCTTTTGTTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
92073801 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTATTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
92073862 ACGTGGACGTTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAA-A-GTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
92073925 ATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
92073986 ACATGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAACTAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * *
92074051 ATAGTGGT-AAAAACGCTTCAAGCAGGATACATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * **
92074112 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
92074177 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGTAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
92074238 ACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
92074273 TAACTTGGGC
Statistics
Matches: 378, Mismatches: 29, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
124 115 0.30
125 4 0.01
126 257 0.68
127 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:92077388 original size:116 final size:116
Alignment explanation
Indices: 92077216--92077597 Score: 651
Period size: 116 Copynumber: 3.3 Consensus size: 116
92077206 TTTATATTTT
* *
92077216 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
* * *
92077281 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
92077332 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
* *
92077397 ACAATATAAAAGTAAATTACAATTACTTTATTTAAAACAGCCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
92077448 ATTACATGAAATAATAT-AAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATT-
92077512 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
92077564 ATTACATGAAA-AATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
92077598 TGTACAAATA
Statistics
Matches: 251, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
115 50 0.20
116 201 0.80
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:92078010 original size:18 final size:18
Alignment explanation
Indices: 92077984--92078026 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
92077974 GACTAGAAAA
* *
92077984 AGGAAACATATAAGGGCT
1 AGGATACATAAAAGGGCT
92078002 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
92078020 AGGATAC
1 AGGATAC
92078027 GTACTTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:92079845 original size:11 final size:11
Alignment explanation
Indices: 92079822--92079873 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
92079812 ATTAACGAGT
*
92079822 TTTGAGAGGAA
1 TTTGAGAGAAA
*
92079833 TTTAAGAGAAA
1 TTTGAGAGAAA
92079844 TTTGAGAG--A
1 TTTGAGAGAAA
*
92079853 TTTGAGAGGAA
1 TTTGAGAGAAA
92079864 TTTGAGAGAA
1 TTTGAGAGAA
92079874 TACTGAAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
9 9 0.26
11 26 0.74
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:92079860 original size:20 final size:20
Alignment explanation
Indices: 92079822--92079872 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
92079812 ATTAACGAGT
92079822 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGA-G-ATTTAAGAGAAA
* *
92079844 TTTGAGAGATTTGAGAGGAA
1 TTTGAGAGATTTAAGAGAAA
92079864 TTTGAGAGA
1 TTTGAGAGA
92079873 ATACTGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 19 0.70
21 1 0.04
22 7 0.26
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.29
Consensus pattern (20 bp):
TTTGAGAGATTTAAGAGAAA
Found at i:92079885 original size:31 final size:31
Alignment explanation
Indices: 92079822--92079885 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
92079812 ATTAACGAGT
* *
92079822 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGGAATTTAAGAGAAATCTGAAAGA
*
92079853 TTTGAGAGGAATTTGAGAG-AATACTGAAAGA
1 TTTGAGAGGAATTTAAGAGAAAT-CTGAAAGA
92079884 TT
1 TT
92079886 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.41, C:0.02, G:0.28, T:0.30
Consensus pattern (31 bp):
TTTGAGAGGAATTTAAGAGAAATCTGAAAGA
Found at i:92080966 original size:15 final size:16
Alignment explanation
Indices: 92080932--92080969 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
92080922 TTGATTTATT
92080932 TTTATTTCTAATTAAA
1 TTTATTTCTAATTAAA
* *
92080948 TTTATTTTTAA-TCAA
1 TTTATTTCTAATTAAA
92080963 TTTATTT
1 TTTATTT
92080970 GATTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTATTTCTAATTAAA
Found at i:92081501 original size:13 final size:13
Alignment explanation
Indices: 92081485--92081525 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
92081475 AAAAATTAAA
92081485 AAAAAGATTGAAT
1 AAAAAGATTGAAT
* * *
92081498 AAAAAAATTAAAA
1 AAAAAGATTGAAT
92081511 AAAAAGATTGAAT
1 AAAAAGATTGAAT
92081524 AA
1 AA
92081526 TTTTAAATTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.20
Consensus pattern (13 bp):
AAAAAGATTGAAT
Found at i:92081501 original size:25 final size:26
Alignment explanation
Indices: 92081473--92081525 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
92081463 AATTGTGTTA
92081473 AAAAAAATT-AAAAAAAAGATTGAAT
1 AAAAAAATTAAAAAAAAAGATTGAAT
92081498 AAAAAAATTAAAAAAAAAGATTGAAT
1 AAAAAAATTAAAAAAAAAGATTGAAT
92081524 AA
1 AA
92081526 TTTTAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.19
Consensus pattern (26 bp):
AAAAAAATTAAAAAAAAAGATTGAAT
Found at i:92082638 original size:32 final size:32
Alignment explanation
Indices: 92082597--92082678 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 32
92082587 ATTGTCAATC
*
92082597 ATTTCAATATCCAACAAGCTT-AAAACATAATA
1 ATTTCAATATCCAACAA-ATTCAAAACATAATA
* **
92082629 ATTTCAATATCTAACAAATTCAAGTCATAATA
1 ATTTCAATATCCAACAAATTCAAAACATAATA
*
92082661 ATTTCAAAATCCAACAAA
1 ATTTCAATATCCAACAAA
92082679 CTAATTTCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 2 0.05
32 41 0.95
ACGTcount: A:0.50, C:0.18, G:0.02, T:0.29
Consensus pattern (32 bp):
ATTTCAATATCCAACAAATTCAAAACATAATA
Found at i:92082666 original size:16 final size:17
Alignment explanation
Indices: 92082622--92082667 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
92082612 AAGCTTAAAA
92082622 CATAATAATTTCAATAT
1 CATAATAATTTCAATAT
* * *
92082639 C-TAACAAATTCAA-GT
1 CATAATAATTTCAATAT
92082654 CATAATAATTTCAA
1 CATAATAATTTCAA
92082668 AATCCAACAA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
15 2 0.09
16 20 0.87
17 1 0.04
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (17 bp):
CATAATAATTTCAATAT
Found at i:92085297 original size:20 final size:20
Alignment explanation
Indices: 92085272--92085310 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
92085262 ACTTGTAACT
92085272 TACCATAATCTTTCACAACA
1 TACCATAATCTTTCACAACA
*
92085292 TACCATAGTCTTTCACAAC
1 TACCATAATCTTTCACAAC
92085311 TTAAACATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.03, T:0.31
Consensus pattern (20 bp):
TACCATAATCTTTCACAACA
Found at i:92085502 original size:42 final size:43
Alignment explanation
Indices: 92085401--92085517 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
92085391 TACCAATACC
* ** ** *
92085401 ATATCCCAGATATGGTCTTACATGGCATCTTGTATCAATGCCG
1 ATATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
* * *
92085444 ATAGCCCAGCTATGGTCTTACACGAAATCTCATATCGATG-CA
1 ATATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
*
92085486 ATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATATCCCAGATATGGTCTTACACGAAATCTCA
92085518 ACTAACTCTA
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
Found at i:92108165 original size:19 final size:21
Alignment explanation
Indices: 92108118--92108188 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 21
92108108 AAATCATAGA
*
92108118 ATAATATTATGATTATTATTAA-
1 ATAATTTTATGATT-TT-TTAAT
*
92108140 ATAAATTTTAT-ATTTTTT-TT
1 AT-AATTTTATGATTTTTTAAT
* *
92108160 ATAATTGTATGCTTTTTTAAT
1 ATAATTTTATGATTTTTTAAT
92108181 ATAATTTT
1 ATAATTTT
92108189 TAAAATTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
19 7 0.18
20 10 0.26
21 10 0.26
22 5 0.13
23 7 0.18
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (21 bp):
ATAATTTTATGATTTTTTAAT
Found at i:92109731 original size:20 final size:20
Alignment explanation
Indices: 92109706--92109744 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
92109696 ATTTACTAAT
*
92109706 ATAATTCTATTTATTAAAAA
1 ATAATTCTATTTAATAAAAA
*
92109726 ATAATTTTATTTAATAAAA
1 ATAATTCTATTTAATAAAA
92109745 TATGATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAATTCTATTTAATAAAAA
Found at i:92113561 original size:26 final size:25
Alignment explanation
Indices: 92113532--92113582 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
92113522 ATTTTATAAT
92113532 AAATAATATAGATTTTGAAGTTTTTA
1 AAATAATATAGATTTTGAA-TTTTTA
* **
92113558 AAATTATATATTTTTTGAATTTTTA
1 AAATAATATAGATTTTGAATTTTTA
92113583 GGATTTGGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (25 bp):
AAATAATATAGATTTTGAATTTTTA
Found at i:92124470 original size:42 final size:42
Alignment explanation
Indices: 92124424--92124543 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 42
92124414 CTTACATGGG
*
92124424 ATCTCACATAGATGCCATATCCCAGATATGGTCTTATACGAA
1 ATCTCATATAGATGCCATATCCCAGATATGGTCTTATACGAA
* * * * * * **
92124466 ATCTCATTTTGATACGATGTCCCAAACGTGGTCTTATACGAA
1 ATCTCATATAGATGCCATATCCCAGATATGGTCTTATACGAA
* *
92124508 ATCTCATATCA-ACGCCATATCCCAGATAAGGTCTTA
1 ATCTCATAT-AGATGCCATATCCCAGATATGGTCTTA
92124544 CATGATAACA
Statistics
Matches: 58, Mismatches: 19, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (42 bp):
ATCTCATATAGATGCCATATCCCAGATATGGTCTTATACGAA
Found at i:92138628 original size:13 final size:13
Alignment explanation
Indices: 92138606--92138636 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
92138596 ATTATATTTA
*
92138606 TTATTTTGTTTTC
1 TTATTCTGTTTTC
92138619 TTATTCTGTTTTC
1 TTATTCTGTTTTC
92138632 TTATT
1 TTATT
92138637 TTTATTATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.10, G:0.06, T:0.74
Consensus pattern (13 bp):
TTATTCTGTTTTC
Found at i:92150908 original size:96 final size:96
Alignment explanation
Indices: 92150744--92150934 Score: 303
Period size: 96 Copynumber: 2.0 Consensus size: 96
92150734 CTTCTTTTTT
* *
92150744 CTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTTGTC
1 CTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGTATC
* *
92150809 TGCTCCATCGTTCCC-TCCGATGACAGACTTG
66 TGCTCCATCATTCCCAT-CGATAACAGACTTG
* *
92150840 CTCCTCTTTGCCCTCTTGGCTTCGGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCGTATC
1 CTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGTATC
*
92150905 TGCTCGATCATTCCCATCGATAACAGACTT
66 TGCTCCATCATTCCCATCGATAACAGACTT
92150935 CCTTGGACAC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 86 0.99
97 1 0.01
ACGTcount: A:0.13, C:0.36, G:0.18, T:0.34
Consensus pattern (96 bp):
CTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGTATC
TGCTCCATCATTCCCATCGATAACAGACTTG
Found at i:92153448 original size:47 final size:47
Alignment explanation
Indices: 92153370--92153832 Score: 721
Period size: 47 Copynumber: 9.8 Consensus size: 47
92153360 CCCTTCGGGA
* * * *
92153370 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
92153417 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92153464 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92153511 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92153560 CTTATCACATATATACACTTTTACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92153607 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92153654 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92153701 CTTATCACATATATACACTTTCACATTCATTACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92153748 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92153797 CTTATCACATATATACACTTTCACATTCATCACATC
1 CTTATCACATATATACACTTTCACATTCATCACATC
92153833 ACAATTATCC
Statistics
Matches: 382, Mismatches: 29, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
46 2 0.01
47 292 0.76
49 88 0.23
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:92153639 original size:143 final size:140
Alignment explanation
Indices: 92153370--92153831 Score: 719
Period size: 143 Copynumber: 3.2 Consensus size: 140
92153360 CCCTTCGGGA
* * * * *
92153370 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTTGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TTGGCCTTATCACATATATACAC
* *
92153435 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACTTTCACATTCATCACATC
92153500 GGCCATTAGGC
130 GGCCATTAGGC
92153511 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATT-GGCCTTATCACATATATAC
*
92153576 ACTTTTACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
92153641 TCGGCCATTAGGC
128 TCGGCCATTAGGC
* * *
92153654 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-GGCCTTATCACATATATACAC
*
92153719 TTTCACATTCATTACATCGG-TCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
65 TTTCACATTCATCACATCGGCT-ATTAGGCCTTATCACATATATAT--ACTTTCACATTCATCAC
* *
92153783 ATTGGCCATTCGGC
127 ATCGGCCATTAGGC
92153797 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
92153832 CACAATTATC
Statistics
Matches: 298, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
140 1 0.00
141 103 0.35
142 2 0.01
143 192 0.64
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:92153785 original size:237 final size:237
Alignment explanation
Indices: 92153370--92153832 Score: 804
Period size: 237 Copynumber: 2.0 Consensus size: 237
92153360 CCCTTCGGGA
* * * *
92153370 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTTGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTTGGCCCTATCACATATATACAC
92153435 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
92153500 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
92153565 CACATATATACACTTTTACATTCATCACATCGGCTATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
92153607 CTTATCACATATATATACTTTCACATTCATCACATCGGCCA-TTAGG-CCTCATCACATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTT-GGCCCT-ATCACATATATAC
* *
92153670 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATTACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
92153735 TCGGTCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
129 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
92153800 ATCACATATATACACTTTCACATTCATCACATC
194 ATCACATATATACACTTTCACATTCATCACATC
92153833 ACAATTATCC
Statistics
Matches: 214, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
236 5 0.02
237 209 0.98
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTTGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT
CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:92157583 original size:13 final size:13
Alignment explanation
Indices: 92157565--92157589 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92157555 TAATGGTATA
92157565 TTGAATCCATGAC
1 TTGAATCCATGAC
92157578 TTGAATCCATGA
1 TTGAATCCATGA
92157590 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:92158169 original size:27 final size:27
Alignment explanation
Indices: 92158134--92158312 Score: 184
Period size: 27 Copynumber: 6.6 Consensus size: 27
92158124 TTAAATTGTA
92158134 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
92158161 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
92158188 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
92158215 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
92158243 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* *
92158270 TAGCACTAAGTGTGCGAGT-TGATTATA
1 TAGCACTAAGTGTGCGA-TATGACTATG
*
92158297 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
92158313 GGCTCAATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:92158250 original size:82 final size:81
Alignment explanation
Indices: 92158136--92158291 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
92158126 AAATTGTATA
* *
92158136 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
92158200 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
92158217 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
92158282 TGCGAGTTGA
65 TGCGAATTGA
92158292 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:92158303 original size:82 final size:81
Alignment explanation
Indices: 92158132--92158312 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
92158122 GATTAAATTG
* *
92158132 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
92158197 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
92158213 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
92158277 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
92158295 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
92158313 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:92162290 original size:17 final size:17
Alignment explanation
Indices: 92162268--92162352 Score: 58
Period size: 17 Copynumber: 5.4 Consensus size: 17
92162258 CATATCTGGG
92162268 ATATGACATCGGCATCA
1 ATATGACATCGGCATCA
* * *
92162285 ATATGAAATCCG-A--G
1 ATATGACATCGGCATCA
92162299 ATATGACATCGGCATCA
1 ATATGACATCGGCATCA
* * *
92162316 ATATAAAATCTGG----G
1 ATATGACATC-GGCATCA
92162330 ATATGACATCGGCATCA
1 ATATGACATCGGCATCA
92162347 ATATGA
1 ATATGA
92162353 AATCCCATGT
Statistics
Matches: 48, Mismatches: 12, Indels: 16
0.63 0.16 0.21
Matches are distributed among these distances:
13 2 0.04
14 18 0.38
15 1 0.02
16 1 0.02
17 24 0.50
18 2 0.04
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (17 bp):
ATATGACATCGGCATCA
Found at i:92162305 original size:31 final size:31
Alignment explanation
Indices: 92162267--92162357 Score: 155
Period size: 31 Copynumber: 2.9 Consensus size: 31
92162257 CCATATCTGG
92162267 GATATGACATCGGCATCAATATGAAATCCGA
1 GATATGACATCGGCATCAATATGAAATCCGA
* * *
92162298 GATATGACATCGGCATCAATATAAAATCTGG
1 GATATGACATCGGCATCAATATGAAATCCGA
92162329 GATATGACATCGGCATCAATATGAAATCC
1 GATATGACATCGGCATCAATATGAAATCC
92162358 CATGTAAGAC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (31 bp):
GATATGACATCGGCATCAATATGAAATCCGA
Found at i:92162383 original size:48 final size:48
Alignment explanation
Indices: 92162323--92162522 Score: 199
Period size: 48 Copynumber: 4.2 Consensus size: 48
92162313 TCAATATAAA
* *
92162323 ATCTGGGATATGACATCGGCATCAATATGAAATCCCATGTAAGACCAT
1 ATCTAGGATATGACATCGGCATCAATATGAGATCCCATGTAAGACCAT
*
92162371 ATCTAGGATATGACATTGGCATCGAA-ATGAGATCCCATGTAAGACCAT
1 ATCTAGGATATGACATCGGCATC-AATATGAGATCCCATGTAAGACCAT
* * * * * *
92162419 ATC-AGGGATATGGCATTGGCATTAATATGAGGTCCCGTATAAGACCAT
1 ATCTA-GGATATGACATCGGCATCAATATGAGATCCCATGTAAGACCAT
* * * * * ** *
92162467 GTCTGGGACATGGCATCGGCACCGTTATGAGA-CTTCATGTAAGACCAT
1 ATCTAGGATATGACATCGGCATCAATATGAGATC-CCATGTAAGACCAT
92162515 ATCTAGGA
1 ATCTAGGA
92162523 CATGGCTTTG
Statistics
Matches: 125, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
47 4 0.03
48 119 0.95
49 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (48 bp):
ATCTAGGATATGACATCGGCATCAATATGAGATCCCATGTAAGACCAT
Found at i:92162497 original size:96 final size:96
Alignment explanation
Indices: 92162327--92162517 Score: 222
Period size: 96 Copynumber: 2.0 Consensus size: 96
92162317 TATAAAATCT
* * *
92162327 GGGATATGACATCGGCATCAATATGAAATCCCATGTAAGACCATATCTAGGATATGACATTGGCA
1 GGGATATGACATCGGCATCAATATGAAATCCCATATAAGACCATATCTAGGACATGACATCGGCA
*
92162392 TCGAAATGAGA-TCCCATGTAAGACCATATCA
66 CCGAAATGAGACT-CCATGTAAGACCATATCA
* * * ** * * * *
92162423 GGGATATGGCATTGGCATTAATATGAGGTCCCGTATAAGACCATGTCTGGGACATGGCATCGGCA
1 GGGATATGACATCGGCATCAATATGAAATCCCATATAAGACCATATCTAGGACATGACATCGGCA
** *
92162488 CCGTTATGAGACTTCATGTAAGACCATATC
66 CCGAAATGAGACTCCATGTAAGACCATATC
92162518 TAGGACATGG
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
96 77 0.99
97 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (96 bp):
GGGATATGACATCGGCATCAATATGAAATCCCATATAAGACCATATCTAGGACATGACATCGGCA
CCGAAATGAGACTCCATGTAAGACCATATCA
Found at i:92162551 original size:42 final size:41
Alignment explanation
Indices: 92162492--92162728 Score: 190
Period size: 42 Copynumber: 5.6 Consensus size: 41
92162482 TCGGCACCGT
* *
92162492 TATGAGACTTCATGTAAGACCATATCTAGGACATGGCTTTGA
1 TATGAGATTTCATGTAAGACCATATCT-GGACATGGCTTCGA
* * **
92162534 TATGATATTTCATGTAAGACCATATTTGGGACATGGCACCGA
1 TATGAGATTTCATGTAAGACCATATCT-GGACATGGCTTCGA
* * * * *
92162576 TACGAGATTCCGTGTAAGACCATAGCTGGGCTACTGG-TATCGA
1 TATGAGATTTCATGTAAGACCATATCTGGAC-A-TGGCT-TCGA
* * * * * *
92162619 TATGATATTACGTATAAGACCATGTCTAGGACATGGCATT-GT
1 TATGAGATTTCATGTAAGACCATATCT-GGACATGGC-TTCGA
* *
92162661 TATGAGATTTCATGTAAGACCATAGCTGGGCTATTGGCTTCGA
1 TATGAGATTTCATGTAAGACCATATCTGGAC-A-TGGCTTCGA
* *
92162704 TATGAGATTACATGTAAGATCATAT
1 TATGAGATTTCATGTAAGACCATAT
92162729 TCGGGATATG
Statistics
Matches: 151, Mismatches: 35, Indels: 17
0.74 0.17 0.08
Matches are distributed among these distances:
41 6 0.04
42 85 0.56
43 56 0.37
44 4 0.03
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (41 bp):
TATGAGATTTCATGTAAGACCATATCTGGACATGGCTTCGA
Found at i:92162638 original size:43 final size:43
Alignment explanation
Indices: 92162590--92162727 Score: 122
Period size: 43 Copynumber: 3.2 Consensus size: 43
92162580 AGATTCCGTG
* *
92162590 TAAGACCATAGCTGGGCTACTGGTATCGATATGATATTACGTA
1 TAAGACCATAGCTGGGCTACTGGTATCGATATGAGATTACATA
* * * * * *
92162633 TAAGACCAT-GTCTAGG--ACATGGCATTGTTATGAGATTTCATG
1 TAAGACCATAG-CTGGGCTAC-TGGTATCGATATGAGATTACATA
* *
92162675 TAAGACCATAGCTGGGCTATTGGCT-TCGATATGAGATTACATG
1 TAAGACCATAGCTGGGCTACTGG-TATCGATATGAGATTACATA
*
92162718 TAAGATCATA
1 TAAGACCATA
92162728 TTCGGGATAT
Statistics
Matches: 74, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
41 2 0.03
42 30 0.41
43 41 0.55
44 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (43 bp):
TAAGACCATAGCTGGGCTACTGGTATCGATATGAGATTACATA
Found at i:92162740 original size:85 final size:84
Alignment explanation
Indices: 92162490--92162745 Score: 275
Period size: 85 Copynumber: 3.0 Consensus size: 84
92162480 CATCGGCACC
* * * * *
92162490 GTTATGAGACTTCATGTAAGACCATATCTAGGAC-ATGGCTTTGATATGATATTTCATGTAAGAC
1 GTTATGAGATTTCATGTAAGACCATAGCT-GGGCTATGGCTTCGATATGATATTACATGTAAGAC
* **
92162554 CATATTTGGGACATGGCACC
65 CATATTCGGGACATGGCATT
* * * * * *
92162574 GATACGAGATTCCGTGTAAGACCATAGCTGGGCTACTGG-TATCGATATGATATTACGTATAAGA
1 GTTATGAGATTTCATGTAAGACCATAGCTGGGCTA-TGGCT-TCGATATGATATTACATGTAAGA
* *
92162638 CCAT-GTCTAGGACATGGCATT
64 CCATATTC-GGGACATGGCATT
* *
92162659 GTTATGAGATTTCATGTAAGACCATAGCTGGGCTATTGGCTTCGATATGAGATTACATGTAAGAT
1 GTTATGAGATTTCATGTAAGACCATAGCTGGGCTA-TGGCTTCGATATGATATTACATGTAAGAC
*
92162724 CATATTCGGGATATGGCATT
65 CATATTCGGGACATGGCATT
92162744 GT
1 GT
92162746 ACGACATATG
Statistics
Matches: 138, Mismatches: 28, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
83 3 0.02
84 26 0.19
85 106 0.77
86 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (84 bp):
GTTATGAGATTTCATGTAAGACCATAGCTGGGCTATGGCTTCGATATGATATTACATGTAAGACC
ATATTCGGGACATGGCATT
Found at i:92166242 original size:18 final size:18
Alignment explanation
Indices: 92166219--92166255 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
92166209 TATAGTTTAC
*
92166219 TATTCGATTTATTCAAAT
1 TATTCGAGTTATTCAAAT
*
92166237 TATTCGAGTTATTCTAAT
1 TATTCGAGTTATTCAAAT
92166255 T
1 T
92166256 CGAAAACTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.51
Consensus pattern (18 bp):
TATTCGAGTTATTCAAAT
Found at i:92178330 original size:43 final size:43
Alignment explanation
Indices: 92178248--92178332 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
92178238 AAACCGTACA
*
92178248 ATGCCAACGTCCCAAACGTGGTCTTACATGTAACCACATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACATGTAAACACATATCG
*
92178291 ATGCC-ACTGTCCCAAACAG-GGTCTTAC-TCGTAAATACATATC
1 ATGCCAAC-GTCCCAAAC-GTGGTCTTACAT-GTAAACACATATC
92178333 AGAATCACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 33 0.89
44 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACATGTAAACACATATCG
Found at i:92185786 original size:18 final size:19
Alignment explanation
Indices: 92185752--92185792 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
92185742 CTATGCAGAC
92185752 TTTTGGGATTGTTTTTT-G
1 TTTTGGGATTGTTTTTTGG
*
92185770 TTTT-GGATTTTTATTTTGG
1 TTTTGGGATTGTT-TTTTGG
92185789 TTTT
1 TTTT
92185793 CTAGCATGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 7 0.35
18 8 0.40
19 5 0.25
ACGTcount: A:0.07, C:0.00, G:0.22, T:0.71
Consensus pattern (19 bp):
TTTTGGGATTGTTTTTTGG
Found at i:92192361 original size:15 final size:15
Alignment explanation
Indices: 92192337--92192367 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
92192327 AGATTTGAAT
92192337 TATGTAGAGGAAGTG
1 TATGTAGAGGAAGTG
*
92192352 TATGTGGAGGAAGTG
1 TATGTAGAGGAAGTG
92192367 T
1 T
92192368 TCTGTGTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.42, T:0.29
Consensus pattern (15 bp):
TATGTAGAGGAAGTG
Found at i:92198833 original size:25 final size:27
Alignment explanation
Indices: 92198788--92198850 Score: 87
Period size: 25 Copynumber: 2.4 Consensus size: 27
92198778 AAAACAAGTC
92198788 GAAAT-AATAATATAATGAAAAGGCTT
1 GAAATAAATAATATAATGAAAAGGCTT
*
92198814 GAAATAAATAATA-AAT-AAAAGGTTT
1 GAAATAAATAATATAATGAAAAGGCTT
*
92198839 GCAATAAATAAT
1 GAAATAAATAAT
92198851 GAAAGTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 19 0.56
26 8 0.24
27 7 0.21
ACGTcount: A:0.57, C:0.03, G:0.13, T:0.27
Consensus pattern (27 bp):
GAAATAAATAATATAATGAAAAGGCTT
Found at i:92201849 original size:18 final size:19
Alignment explanation
Indices: 92201811--92201849 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
92201801 TAATGGTACT
*
92201811 AATTATATAGAAGTTTCTC
1 AATTATATAGAAGTTTATC
92201830 AATTATATAG-AGTTTATC
1 AATTATATAGAAGTTTATC
92201848 AA
1 AA
92201850 AACTTGCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (19 bp):
AATTATATAGAAGTTTATC
Found at i:92202891 original size:9 final size:9
Alignment explanation
Indices: 92202877--92202903 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
92202867 AAAATACCAT
92202877 TAAAATTTC
1 TAAAATTTC
92202886 TAAAATTTC
1 TAAAATTTC
92202895 TAAAATTTC
1 TAAAATTTC
92202904 CTAAGAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (9 bp):
TAAAATTTC
Done.