Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 277 of 344
Found at i:92956645 original size:4 final size:4
Alignment explanation
Indices: 92956638--92956692 Score: 58
Period size: 4 Copynumber: 13.2 Consensus size: 4
92956628 AAGAAAGAGC
* *
92956638 AAAG AAAG AAAG -AAG AGAG AAAG AAAG AAAG AAAA AAAGG AAGAG AAGAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA-G AA-AG AA-AG
92956688 AAAG A
1 AAAG A
92956693 GAGGGGGGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
3 3 0.07
4 30 0.68
5 10 0.23
6 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:92956648 original size:15 final size:14
Alignment explanation
Indices: 92956618--92956692 Score: 66
Period size: 15 Copynumber: 5.3 Consensus size: 14
92956608 AGGAGGGAAG
* *
92956618 AAGAAAGGGTAAGA
1 AAGAAAGAGAAAGA
92956632 AAGAGCAA-AGAAAGA
1 AAGA--AAGAGAAAGA
92956647 AAGAAGAGAGAAAGA
1 AAGAA-AGAGAAAGA
92956662 AAGAAAGA-AAA-A
1 AAGAAAGAGAAAGA
*
92956674 AAGGAAGAGAAGAGA
1 AAGAAAGAGAA-AGA
92956689 AAGA
1 AAGA
92956693 GAGGGGGGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
12 8 0.16
13 6 0.12
14 9 0.18
15 25 0.50
16 2 0.04
ACGTcount: A:0.67, C:0.01, G:0.31, T:0.01
Consensus pattern (14 bp):
AAGAAAGAGAAAGA
Found at i:92956660 original size:19 final size:19
Alignment explanation
Indices: 92956628--92956671 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
92956618 AAGAAAGGGT
92956628 AAGAAAGAGCAAAGAAAGA
1 AAGAAAGAGCAAAGAAAGA
92956647 AAGAAGAGAG-AAAGAAAGA
1 AAGAA-AGAGCAAAGAAAGA
92956666 AAGAAA
1 AAGAAA
92956672 AAAAGGAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.04
19 19 0.79
20 4 0.17
ACGTcount: A:0.70, C:0.02, G:0.27, T:0.00
Consensus pattern (19 bp):
AAGAAAGAGCAAAGAAAGA
Found at i:92956667 original size:23 final size:22
Alignment explanation
Indices: 92956632--92956692 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 22
92956622 AAGGGTAAGA
*
92956632 AAGAGCAAAGAAAGAAAGAAGAGAG
1 AAGAG-AAAGAAAGAAA-AAAAG-G
92956657 AA-AGAAAGAAAGAAAAAAAGG
1 AAGAGAAAGAAAGAAAAAAAGG
92956678 AAGAGAAGAGAAAGA
1 AAGAGAA-AGAAAGA
92956693 GAGGGGGGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 3 0.09
22 8 0.24
23 18 0.55
24 2 0.06
25 2 0.06
ACGTcount: A:0.69, C:0.02, G:0.30, T:0.00
Consensus pattern (22 bp):
AAGAGAAAGAAAGAAAAAAAGG
Found at i:92964434 original size:22 final size:22
Alignment explanation
Indices: 92964402--92964463 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
92964392 AAAATCATAT
*
92964402 ATTAATCATATATTATTTT-AA
1 ATTAATTATATATTATTTTGAA
92964423 ATTTAATTATATATTAATTTTGAA
1 A-TTAATTATATATT-ATTTTGAA
*
92964447 ATAAATTA-ATATTATTT
1 ATTAATTATATATTATTT
92964464 AAAAATAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.14
22 17 0.47
23 11 0.31
24 3 0.08
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATTAATTATATATTATTTTGAA
Found at i:92966431 original size:20 final size:19
Alignment explanation
Indices: 92966403--92966518 Score: 92
Period size: 20 Copynumber: 5.8 Consensus size: 19
92966393 ATTTTTATTT
*
92966403 TTATATTATATATTATATAA
1 TTATTTTATATATTATAT-A
92966423 TTATTTTATATATTACTCATA
1 TTATTTTATATATTA-T-ATA
* *
92966444 TTATTTAGATGTATTATATA
1 TTATTT-TATATATTATATA
* * *
92966464 TTACTTTCACATA-TATACTT
1 TTA-TTTTATATATTATA-TA
*
92966484 TTATATTATATATTATAT-
1 TTATTTTATATATTATATA
92966502 TTATTTTATATTATTAT
1 TTATTTTATA-TATTAT
92966519 GTCATTTTAT
Statistics
Matches: 78, Mismatches: 11, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
18 9 0.12
19 17 0.22
20 31 0.40
21 12 0.15
22 9 0.12
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (19 bp):
TTATTTTATATATTATATA
Found at i:92966447 original size:29 final size:29
Alignment explanation
Indices: 92966397--92966468 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
92966387 TGCTTTATTT
92966397 TTATTTT-TATATTA-TATATTATATA-A
1 TTATTTTATATATTACTATATTATATAGA
*
92966423 TTATTTTATATATTACTCATATTATTTAGA
1 TTATTTTATATATTACT-ATATTATATAGA
92966453 TGTA--TTATATATTACT
1 T-TATTTTATATATTACT
92966469 TTCACATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
26 7 0.17
27 7 0.17
28 1 0.03
29 21 0.52
30 2 0.05
31 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (29 bp):
TTATTTTATATATTACTATATTATATAGA
Found at i:92966511 original size:16 final size:18
Alignment explanation
Indices: 92966487--92966535 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
92966477 TATACTTTTA
*
92966487 TATTATATATTA-TAT-T
1 TATTTTATATTATTATGT
92966503 TATTTTATATTATTATGT
1 TATTTTATATTATTATGT
* *
92966521 CATTTTATACTATTA
1 TATTTTATATTATTA
92966536 AATATTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 11 0.39
17 3 0.11
18 14 0.50
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (18 bp):
TATTTTATATTATTATGT
Found at i:92966866 original size:17 final size:17
Alignment explanation
Indices: 92966809--92966866 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
92966799 TTTAAACCAT
*
92966809 TATATTTTATATTTTTA
1 TATATTATATATTTTTA
*
92966826 TATAATTAT-TATTCTTA
1 TAT-ATTATATATTTTTA
92966843 TA-A--ATATATTTTTA
1 TATATTATATATTTTTA
92966857 TATATTATAT
1 TATATTATAT
92966867 CATTAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
13 2 0.06
14 9 0.27
15 2 0.06
17 16 0.48
18 4 0.12
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATTATATATTTTTA
Found at i:92978505 original size:46 final size:47
Alignment explanation
Indices: 92978437--92978526 Score: 110
Period size: 46 Copynumber: 1.9 Consensus size: 47
92978427 ACAAGATCCA
**
92978437 AGATGATTTGACATTCTTGTGCTTACAAGGAA-CAAATCGAAGACAT
1 AGATGATTTGACATTCACGTGCTTACAAGGAAGCAAATCGAAGACAT
* * * * *
92978483 AGATGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGA
1 AGATGATTTGACATTCACGTGCTTACAAGGAAGCAAATCGAAGA
92978527 TGATTTCTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
46 26 0.72
47 10 0.28
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (47 bp):
AGATGATTTGACATTCACGTGCTTACAAGGAAGCAAATCGAAGACAT
Found at i:93006056 original size:21 final size:21
Alignment explanation
Indices: 93006009--93006059 Score: 95
Period size: 20 Copynumber: 2.5 Consensus size: 21
93005999 CTTGATGATG
93006009 AATCGGCTTCTGAGATGGATC
1 AATCGGCTTCTGAGATGGATC
93006030 -ATCGGCTTCTGAGATGGATC
1 AATCGGCTTCTGAGATGGATC
93006050 AATCGGCTTC
1 AATCGGCTTC
93006060 CTTGGAGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 20 0.69
21 9 0.31
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (21 bp):
AATCGGCTTCTGAGATGGATC
Found at i:93008905 original size:22 final size:23
Alignment explanation
Indices: 93008863--93008908 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
93008853 TTTGTGAAAA
93008863 TTTCGTGAGCTAATTTTATCGTT
1 TTTCGTGAGCTAATTTTATCGTT
93008886 TTTCGTGAGCTAA-TTTATCGTT
1 TTTCGTGAGCTAATTTTATCGTT
93008908 T
1 T
93008909 AATGGCTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.52
Consensus pattern (23 bp):
TTTCGTGAGCTAATTTTATCGTT
Found at i:93010115 original size:24 final size:23
Alignment explanation
Indices: 93010074--93010170 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
93010064 GCTTTATCAT
**
93010074 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCAAAGCC-CTTTTA
*
93010099 ATAACTGAGGCAAAGCCCTTTTTG
1 ATAACTGAGGCAAAGCCC-TTTTA
* *
93010123 ATAAACTGGGGCAAAGCCCTTTTCG
1 AT-AACTGAGGCAAAGCCCTTTT-A
* *
93010148 GTAAACTGTGGCAAAGCCCTTTT
1 AT-AACTGAGGCAAAGCCCTTTT
93010171 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.02
24 19 0.30
25 43 0.68
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (23 bp):
ATAACTGAGGCAAAGCCCTTTTA
Found at i:93010129 original size:25 final size:25
Alignment explanation
Indices: 93010101--93010170 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
93010091 CTCTTTTAAT
*
93010101 AACTGAGGCAAAGCCCTTTTTGATA
1 AACTGAGGCAAAGCCCTTTTCGATA
* *
93010126 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGAGGCAAAGCCCTTTTCGATA
*
93010151 AACTGTGGCAAAGCCCTTTT
1 AACTGAGGCAAAGCCCTTTT
93010171 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTGAGGCAAAGCCCTTTTCGATA
Found at i:93010243 original size:20 final size:21
Alignment explanation
Indices: 93010218--93010265 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
93010208 AAATGAATAC
*
93010218 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
93010238 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
93010259 ATCATGT
1 ATCATGT
93010266 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:93015784 original size:43 final size:43
Alignment explanation
Indices: 93015737--93015898 Score: 147
Period size: 43 Copynumber: 3.8 Consensus size: 43
93015727 AATGCCAACG
* *
93015737 TCCCAGACGTGGTCTTACATGTAATCATATCTCGATGCCACTA
1 TCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTA
* * *
93015780 TCCCAGACAG-GGTCTTACACG-AATCAAATAT-GATGTCGA-TG
1 TCCCAGAC-GTGGTCTTACATGTAATCAAATATCGATG-CCACTA
* * * *
93015821 TCCCAGACATGGTCTTACATGTAATTACATATCAATGCCAAC-A
1 TCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACTA
* *
93015864 TCCCAGATGTGGTCTTACATG-AATACACATATCGA
1 TCCCAGACGTGGTCTTACATGTAAT-CAAATATCGA
93015899 AAATCCTATG
Statistics
Matches: 95, Mismatches: 16, Indels: 16
0.75 0.13 0.13
Matches are distributed among these distances:
41 23 0.24
42 22 0.23
43 49 0.52
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTA
Found at i:93032942 original size:40 final size:40
Alignment explanation
Indices: 93032878--93032953 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
93032868 CTATGTTTGG
*
93032878 CACTTAGTGTGTGATTCGAGATAGCTTCAGCTATATAAAA
1 CACTTAGTGTGCGATTCGAGATAGCTTCAGCTATATAAAA
* **
93032918 CACTTAGTGTGCGAATTGGA-ATAGCTTTGGCTATAT
1 CACTTAGTGTGCG-ATTCGAGATAGCTTCAGCTATAT
93032954 GTGGCACTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 26 0.84
41 5 0.16
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (40 bp):
CACTTAGTGTGCGATTCGAGATAGCTTCAGCTATATAAAA
Found at i:93035497 original size:49 final size:49
Alignment explanation
Indices: 93035430--93035675 Score: 278
Period size: 49 Copynumber: 5.0 Consensus size: 49
93035420 GTAGACAAGG
** *
93035430 TTATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
93035479 TTATCTAGTACACGTAGTAGCCTGCACCTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
** * * * * *
93035529 CCATCTGATACACATAGAAGCCTGGACTTAGTACTACACACGTGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * *
93035579 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
93035629 TTAT-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TTATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
93035676 TCACAATAGA
Statistics
Matches: 162, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
49 81 0.50
50 44 0.27
51 37 0.23
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:93035952 original size:27 final size:27
Alignment explanation
Indices: 93035922--93035975 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
93035912 TCATACGACC
* *
93035922 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
93035949 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
93035976 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:93042363 original size:18 final size:18
Alignment explanation
Indices: 93042342--93042382 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
93042332 ATACATATTA
*
93042342 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
93042360 TATTACATACTATATTTT
1 TATTACATACTATATTTT
93042378 TATTA
1 TATTA
93042383 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:93042512 original size:21 final size:22
Alignment explanation
Indices: 93042486--93042546 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
93042476 GCAAGATACT
93042486 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
93042507 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
93042529 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
93042547 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:93046465 original size:40 final size:40
Alignment explanation
Indices: 93046369--93046513 Score: 195
Period size: 40 Copynumber: 3.6 Consensus size: 40
93046359 TATTCGGATG
93046369 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
*
93046412 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
93046452 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
* *
93046492 ATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
93046514 TACTTGGGTT
Statistics
Matches: 93, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
39 15 0.16
40 45 0.48
41 2 0.02
43 31 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:93054438 original size:37 final size:38
Alignment explanation
Indices: 93054362--93054571 Score: 261
Period size: 37 Copynumber: 5.6 Consensus size: 38
93054352 TATTCGGATG
* *
93054362 ATATCCGGGCTAAGT--CG-AGGCATTTGTGCAAGTTACT
1 ATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCT
93054399 ATATCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGCT
1 ATATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
93054436 ATATCGGGC-AAGTCCCGAAGGCATTTGTGCTAGTGCT
1 ATATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
* *
93054473 ATACCGGGCTAAGTCCCGAAGGCA-TTCTGCTAGTGACT
1 ATATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG-CT
* *
93054511 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCT
* *
93054551 ATATCCGGCTAAATCCCGAAG
1 ATATCGGGCTAAGTCCCGAAG
93054572 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
36 14 0.09
37 59 0.38
38 33 0.21
39 33 0.21
40 13 0.08
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (38 bp):
ATATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
Found at i:93056734 original size:49 final size:47
Alignment explanation
Indices: 93056669--93056796 Score: 150
Period size: 49 Copynumber: 2.7 Consensus size: 47
93056659 TGTTGGGTGT
*
93056669 CAGTGTAAGACCTGTCTGGGACATGGCATC-AGCTTGGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CTT-GA-ATATGAAAGC
* * * * **
93056718 TAGTGTAAGACCTGTCTAGGACACGGCATCGACTTTAATATGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTGAATATGAAAGC
93056765 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCG
93056797 GCATTTGATC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
47 18 0.27
48 18 0.27
49 30 0.45
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTGAATATGAAAGC
Found at i:93065340 original size:36 final size:36
Alignment explanation
Indices: 93065272--93065340 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
93065262 TTGGTCGCAT
* *
93065272 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA
1 GTGTAGTACTAAGTGCAAGCTACTACGCGTACCCGA
*
93065308 GTGTAGTACTAAGTGCAAGCTACTACGTGTACC
1 GTGTAGTACTAAGTGCAAGCTACTACGCGTACC
93065341 AGATTATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (36 bp):
GTGTAGTACTAAGTGCAAGCTACTACGCGTACCCGA
Found at i:93065366 original size:85 final size:85
Alignment explanation
Indices: 93065223--93065389 Score: 298
Period size: 85 Copynumber: 2.0 Consensus size: 85
93065213 GAGGTCACGT
* *
93065223 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
*
93065288 AGGCTACTATGCGTACCCGA
66 AAGCTACTATGCGTACCCGA
*
93065308 GTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
93065373 AAGCTACTATGCGTACC
66 AAGCTACTATGCGTACC
93065390 AGATGGCTTC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (85 bp):
GTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
AAGCTACTATGCGTACCCGA
Found at i:93071302 original size:12 final size:13
Alignment explanation
Indices: 93071285--93071318 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
93071275 CGTGTTGTGA
93071285 TACACGGTC-ATG
1 TACACGGTCAATG
93071297 TACACGGTCAATG
1 TACACGGTCAATG
93071310 TACACGGTC
1 TACACGGTC
93071319 GTGTGTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (13 bp):
TACACGGTCAATG
Found at i:93076394 original size:7 final size:7
Alignment explanation
Indices: 93076382--93076414 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
93076372 AAAATAAAAG
93076382 TTTTTTA
1 TTTTTTA
93076389 TTTTTTTA
1 -TTTTTTA
93076397 TTTTTTA
1 TTTTTTA
93076404 -TTTTTA
1 TTTTTTA
93076410 TTTTT
1 TTTTT
93076415 AATAAATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:93093336 original size:12 final size:12
Alignment explanation
Indices: 93093319--93093358 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
93093309 CAGAGAATAG
*
93093319 AGAAGAAAAGAA
1 AGAAGAAAAAAA
93093331 AGAAGAAAAAAA
1 AGAAGAAAAAAA
93093343 ATGAA-AAAAAAA
1 A-GAAGAAAAAAA
93093355 AGAA
1 AGAA
93093359 CTGGAAGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 3 0.12
12 20 0.77
13 3 0.12
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (12 bp):
AGAAGAAAAAAA
Found at i:93097789 original size:24 final size:24
Alignment explanation
Indices: 93097757--93097806 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
93097747 CGAAGTTCAA
93097757 CTTTATAAACATTGTCTTAGTTCT
1 CTTTATAAACATTGTCTTAGTTCT
*
93097781 CTTTATAAATATTGTCTTAGTTCT
1 CTTTATAAACATTGTCTTAGTTCT
93097805 CT
1 CT
93097807 ATCTTCCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (24 bp):
CTTTATAAACATTGTCTTAGTTCT
Found at i:93102629 original size:47 final size:47
Alignment explanation
Indices: 93102545--93103096 Score: 897
Period size: 47 Copynumber: 11.6 Consensus size: 47
93102535 TATTTGAATA
93102545 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
93102594 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
93102641 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
93102690 AATGTGAAATTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
93102737 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
93102784 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
93102831 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
93102880 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
93102927 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
93102976 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
93103023 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
93103070 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
93103097 TCCCGAAGGG
Statistics
Matches: 473, Mismatches: 24, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
47 325 0.69
49 148 0.31
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:93102657 original size:96 final size:96
Alignment explanation
Indices: 93102545--93103096 Score: 950
Period size: 96 Copynumber: 5.8 Consensus size: 96
93102535 TATTTGAATA
93102545 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
93102610 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATAGCCGATGTGATG
*
93102641 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
93102706 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATAGCCGATGTGATG
93102737 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
93102800 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATAGCCGATGTGATG
93102831 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
93102896 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATAGCCGATGTGATG
93102927 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
93102992 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATAGCCGATGTGATG
* * * * * * * *
93103023 AATGTGAAAGTG--TATATATGCGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
93103086 AATGTGATAAG
66 TATGTGATAAG
93103097 TCCCGAAGGG
Statistics
Matches: 439, Mismatches: 15, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
94 146 0.33
96 293 0.67
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:93102719 original size:143 final size:145
Alignment explanation
Indices: 93102545--93103096 Score: 922
Period size: 143 Copynumber: 3.9 Consensus size: 145
93102535 TATTTGAATA
93102545 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
93102610 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
93102675 ATGGCCGATGTGATG
131 ATGGCCGATGTGATG
* *
93102690 AATGTGAAA-T-TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
93102753 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
*
93102816 ATAGCCGATGTGATG
131 ATGGCCGATGTGATG
93102831 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
93102896 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
93102961 ATGGCCGATGTGATG
131 ATGGCCGATGTGATG
93102976 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * *
93103039 TATGCGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
93103097 TCCCGAAGGG
Statistics
Matches: 385, Mismatches: 18, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
141 53 0.14
142 2 0.01
143 274 0.71
144 1 0.00
145 55 0.14
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
ATGGCCGATGTGATG
Found at i:93103316 original size:37 final size:37
Alignment explanation
Indices: 93103215--93103316 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
93103205 CCGAGCTCTA
*
93103215 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
93103252 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
93103289 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
93103317 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:93111841 original size:28 final size:28
Alignment explanation
Indices: 93111821--93111902 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
93111811 GGCACTCAGG
* *
93111821 GTACGAAATATTGAGAATGGCACTTAGT
1 GTACGAGATATTGAGAATGACACTTAGT
**
93111849 GCGCGAGATATTGAGAATGACACTTAGT
1 GTACGAGATATTGAGAATGACACTTAGT
*
93111877 GTATGAGATATTGAGAATGACACTTA
1 GTACGAGATATTGAGAATGACACTTA
93111903 ATGTGCAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (28 bp):
GTACGAGATATTGAGAATGACACTTAGT
Found at i:93111915 original size:28 final size:28
Alignment explanation
Indices: 93111824--93111915 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
93111814 ACTCAGGGTA
* *
93111824 CGAAATATTGAGAATGGCACTTAGTGCG
1 CGAAATATTGAGAATGACACTTAGTGTG
* *
93111852 CGAGATATTGAGAATGACACTTAGTGTA
1 CGAAATATTGAGAATGACACTTAGTGTG
* * *
93111880 TGAGATATTGAGAATGACACTTAATGTG
1 CGAAATATTGAGAATGACACTTAGTGTG
*
93111908 CAAAATAT
1 CGAAATAT
93111916 CGAATGATTC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (28 bp):
CGAAATATTGAGAATGACACTTAGTGTG
Found at i:93114217 original size:31 final size:32
Alignment explanation
Indices: 93114182--93114244 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
93114172 CTTGGCCTGA
*
93114182 CGGAAGCCGGAGC-CAGAGAACTCTCCTCCTT
1 CGGAAGCCGGAGCTCAGAGAACTCTCCCCCTT
*
93114213 CGGAAGCCGGAGCTCGGAGAACTCTCCCCCTT
1 CGGAAGCCGGAGCTCAGAGAACTCTCCCCCTT
93114245 TCTCCTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 13 0.45
32 16 0.55
ACGTcount: A:0.21, C:0.37, G:0.27, T:0.16
Consensus pattern (32 bp):
CGGAAGCCGGAGCTCAGAGAACTCTCCCCCTT
Found at i:93114824 original size:18 final size:18
Alignment explanation
Indices: 93114803--93114885 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
93114793 TATTATATAA
93114803 ATAT-TTATAAATTTTATT
1 ATATGTTAT-AATTTTATT
*
93114821 ATATGTTATATTTTTATTAT
1 ATATGTTATAATTTTA-T-T
* * *
93114841 ATATATTATTTATTCTATT
1 ATATGTTA-TAATTTTATT
93114860 ATAT-TTAT-ATTTTATT
1 ATATGTTATAATTTTATT
93114876 ATATGTTATA
1 ATATGTTATA
93114886 TAATTTTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
16 11 0.21
17 5 0.09
18 13 0.25
19 10 0.19
20 9 0.17
21 5 0.09
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (18 bp):
ATATGTTATAATTTTATT
Found at i:93114831 original size:39 final size:37
Alignment explanation
Indices: 93114788--93114912 Score: 105
Period size: 39 Copynumber: 3.3 Consensus size: 37
93114778 AAAAATAATA
93114788 TATATTATTATATAA-ATATTTATAAATTTTATTATATGT
1 TATATTATTAT-TAATATA-TTATAAATTTTATTATAT-T
* ** *
93114827 TATATTTTTATTATATATATTATTTATTCTATTATATT
1 TATATTATTATTA-ATATATTATAAATTTTATTATATT
* * *
93114865 TATATT-TTATT-ATATGTTATATAATTTTTTTACTATA
1 TATATTATTATTAATATATTATA-AATTTTATTA-TATT
93114902 TATA-TATTATT
1 TATATTATTATT
93114913 TATTTTACTA
Statistics
Matches: 71, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
35 8 0.11
36 8 0.11
37 17 0.24
38 9 0.13
39 26 0.37
40 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (37 bp):
TATATTATTATTAATATATTATAAATTTTATTATATT
Found at i:93114859 original size:21 final size:21
Alignment explanation
Indices: 93114835--93114925 Score: 75
Period size: 21 Copynumber: 4.4 Consensus size: 21
93114825 GTTATATTTT
93114835 TATTATATATATTATTTATTC
1 TATTATATATATTATTTATTC
* *
93114856 TATTATATTTA-TATTTTATTA
1 TATTATATATATTA-TTTATTC
93114877 TATGT-TATATAATT-TTT-TTAC
1 TAT-TATATAT-ATTATTTATT-C
*
93114898 TA-TATATATATTATTTATTT
1 TATTATATATATTATTTATTC
*
93114918 TACTATAT
1 TATTATAT
93114926 TTTTATATGT
Statistics
Matches: 56, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
19 4 0.07
20 14 0.25
21 35 0.62
22 2 0.04
23 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (21 bp):
TATTATATATATTATTTATTC
Found at i:93114895 original size:23 final size:23
Alignment explanation
Indices: 93114867--93114925 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
93114857 ATTATATTTA
* *
93114867 TATTTTATTATATGTTATATAATT
1 TATTTTACTATAT-ATATATAATT
*
93114891 T-TTTTACTATATATATATTATT
1 TATTTTACTATATATATATAATT
93114913 TATTTTACTATAT
1 TATTTTACTATAT
93114926 TTTTATATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.29
23 21 0.68
24 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (23 bp):
TATTTTACTATATATATATAATT
Found at i:93114903 original size:25 final size:25
Alignment explanation
Indices: 93114867--93114933 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 25
93114857 ATTATATTTA
93114867 TATTTTA-T-TATATGTTATATAATT
1 TATTTTACTATATAT-TTATATAATT
*
93114891 T-TTTTACTATATA--TATATTATT
1 TATTTTACTATATATTTATATAATT
*
93114913 TATTTTACTATATTTTTATAT
1 TATTTTACTATATATTTATAT
93114934 GTAAAATTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
22 9 0.25
23 16 0.44
24 2 0.06
25 9 0.25
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (25 bp):
TATTTTACTATATATTTATATAATT
Found at i:93114911 original size:62 final size:56
Alignment explanation
Indices: 93114803--93114927 Score: 153
Period size: 62 Copynumber: 2.1 Consensus size: 56
93114793 TATTATATAA
*
93114803 ATATTTATAAATTTTATTATATGTTATATTTTTATTATATATATTATTTATTCTATT
1 ATATTTAT-AATTTTATTATATGTTATATTTTTATTATATATATTATTTATTCTACT
*
93114860 ATATTTAT-ATTTTATTATATGTTATATAATTTTTTTACTATATATATATTATTTATTTTACT
1 ATATTTATAATTTTATTATATG-T-TAT-A--TTTTTA-T-TATATATATTATTTATTCTACT
93114922 ATATTT
1 ATATTT
93114928 TTATATGTAA
Statistics
Matches: 59, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
55 13 0.22
56 1 0.02
57 11 0.19
58 1 0.02
60 6 0.10
61 1 0.02
62 26 0.44
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (56 bp):
ATATTTATAATTTTATTATATGTTATATTTTTATTATATATATTATTTATTCTACT
Found at i:93114980 original size:16 final size:14
Alignment explanation
Indices: 93114829--93114980 Score: 56
Period size: 16 Copynumber: 9.9 Consensus size: 14
93114819 TTATATGTTA
93114829 TATTTTTATTATAT
1 TATTTTTATTATAT
*
93114843 ATATTATTTATTCTAT
1 -TATT-TTTATTATAT
*
93114859 TATATTTATATTTTAT
1 TAT-TTT-TATTATAT
*
93114875 TATATGTTA-TATAAT
1 TAT-TTTTATTAT-AT
93114890 T-TTTTTACTATATAT
1 TATTTTTA-T-TATAT
*
93114905 ATATTATTTATTTTACT
1 -TATT-TTTATTATA-T
* *
93114922 ATATTTTTATATGTAA
1 -TATTTTTAT-TATAT
* * *
93114938 AATTACTTGTTATAT
1 TATT-TTTATTATAT
*
93114953 TATTTTTATTATTT
1 TATTTTTATTATAT
93114967 TATATTTTACTTAT
1 TAT-TTTTA-TTAT
93114981 CATATTGTTC
Statistics
Matches: 105, Mismatches: 17, Indels: 29
0.70 0.11 0.19
Matches are distributed among these distances:
13 4 0.04
14 13 0.12
15 30 0.29
16 42 0.40
17 12 0.11
18 4 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (14 bp):
TATTTTTATTATAT
Found at i:93124527 original size:44 final size:44
Alignment explanation
Indices: 93124477--93124776 Score: 492
Period size: 44 Copynumber: 6.8 Consensus size: 44
93124467 TCACCGGTGA
93124477 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
93124521 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* * *
93124565 CAGATTTGGCATTTCTATATTGTCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* *
93124609 TAGATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
93124653 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* ** *
93124697 CGGATTTGGCGTCTCTGTATTGTTTGAGAGTAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* * *
93124741 CAGATTTGGCATCTCTGTATTGTTAGAGAGTAGATC
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATC
93124777 AAAATAACGA
Statistics
Matches: 239, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 239 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
Found at i:93126401 original size:27 final size:27
Alignment explanation
Indices: 93126371--93126444 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 27
93126361 TATATGAAAA
93126371 ATAATATATATTATTATATTCATCTTT
1 ATAATATATATTATTATATTCATCTTT
* *
93126398 ATAA-AT-T-TTATTATATGGTGTATTTTT
1 ATAATATATATTATTATAT--T-CATCTTT
*
93126425 ATTATATATATTATT-TATTC
1 ATAATATATATTATTATATTC
93126445 TATTATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
24 9 0.24
25 1 0.03
26 3 0.08
27 13 0.35
28 2 0.05
29 4 0.11
30 5 0.14
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (27 bp):
ATAATATATATTATTATATTCATCTTT
Found at i:93126448 original size:21 final size:21
Alignment explanation
Indices: 93126424--93126516 Score: 77
Period size: 21 Copynumber: 4.4 Consensus size: 21
93126414 GGTGTATTTT
93126424 TATTATATATATTATTTATTC
1 TATTATATATATTATTTATTC
* *
93126445 TATTATATTTA-TATTTTATTA
1 TATTATATATATTA-TTTATTC
93126466 TATGT-TATATAATT-TTT-TTAC
1 TAT-TATATAT-ATTATTTATT-C
*
93126487 TATATATATATATTATTTATTT
1 TAT-TATATATATTATTTATTC
*
93126509 TACTATAT
1 TATTATAT
93126517 TTTTATATGT
Statistics
Matches: 57, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
20 4 0.07
21 38 0.67
22 12 0.21
23 3 0.05
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (21 bp):
TATTATATATATTATTTATTC
Found at i:93126476 original size:25 final size:23
Alignment explanation
Indices: 93126448--93126524 Score: 75
Period size: 25 Copynumber: 3.2 Consensus size: 23
93126438 TTTATTCTAT
*
93126448 TATATTTATATTTTATTATATGTTA
1 TATATTT-TATTTTACTATAT-TTA
* *
93126473 TATAATTT-TTTTACTATATATA
1 TATATTTTATTTTACTATATTTA
*
93126495 TATATTATTTATTTTACTATATTTT
1 TATA-T-TTTATTTTACTATATTTA
93126520 TATAT
1 TATAT
93126525 GTAAAATTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
22 6 0.14
23 10 0.23
24 5 0.12
25 22 0.51
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (23 bp):
TATATTTTATTTTACTATATTTA
Found at i:93126484 original size:23 final size:25
Alignment explanation
Indices: 93126456--93126516 Score: 81
Period size: 23 Copynumber: 2.5 Consensus size: 25
93126446 ATTATATTTA
* *
93126456 TATTTTATTATATGT-TATATAATT
1 TATTTTACTATATATATATATAATT
*
93126480 T-TTTTACTATATATATATATTATT
1 TATTTTACTATATATATATATAATT
93126504 TATTTTACTATAT
1 TATTTTACTATAT
93126517 TTTTATATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 11 0.34
24 10 0.31
25 11 0.34
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (25 bp):
TATTTTACTATATATATATATAATT
Found at i:93126577 original size:33 final size:33
Alignment explanation
Indices: 93126530--93126595 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
93126520 TATATGTAAA
* * ** *
93126530 ATTACTTGTTATATTATTTTTATTATTTTATAT
1 ATTACTTATCATATTATTCATATTATTATATAT
*
93126563 ATTACTTATCATATTGTTCATATTATTATATAT
1 ATTACTTATCATATTATTCATATTATTATATAT
93126596 TTTGTTTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (33 bp):
ATTACTTATCATATTATTCATATTATTATATAT
Found at i:93133166 original size:26 final size:28
Alignment explanation
Indices: 93133082--93133158 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
93133072 GCAATCAAAT
* *
93133082 ATGGCACTCATTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
** *
93133110 ATGGCACTTAGTGTGTGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
93133138 ATGGCACTTAGTGTACGAAAT
1 ATGGCACTTAGTGTACGAAAT
93133159 TTCAAATGAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:93144644 original size:6 final size:6
Alignment explanation
Indices: 93144633--93144659 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
93144623 GGTTTTGAGT
93144633 TTTAAA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT
93144660 GTTTTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:93150206 original size:27 final size:27
Alignment explanation
Indices: 93150176--93150363 Score: 209
Period size: 27 Copynumber: 7.0 Consensus size: 27
93150166 GTAGGAAAAT
93150176 CAGTCATTTTA-CCTCACAGGGGTATTA
1 CAGTCATTTTACCCT-ACAGGGGTATTA
*
93150203 CAGTCATTTTACCCTAAAGGGGTATTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* * * *
93150230 TAGTCATGTTACCCTACAGGGCTTTTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* *
93150257 TAGTCATTTTACCCTACAGGGGTGTTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* * * *
93150284 CAGTCATTTTACCTTATAAGGGTATTT
1 CAGTCATTTTACCCTACAGGGGTATTA
* *
93150311 CAGTCATTTTAACCTAC-GAGGGTATTT
1 CAGTCATTTTACCCTACAG-GGGTATTA
* *
93150338 CAATCATTTTACCCTATAGGGGTATT
1 CAGTCATTTTACCCTACAGGGGTATT
93150364 TTGGATATTA
Statistics
Matches: 136, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 132 0.97
28 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
CAGTCATTTTACCCTACAGGGGTATTA
Found at i:93150316 original size:81 final size:82
Alignment explanation
Indices: 93150177--93150363 Score: 235
Period size: 81 Copynumber: 2.3 Consensus size: 82
93150167 TAGGAAAATC
93150177 AGTCATTTTA-CCTCACAGGGGTATTACAGTCATTTTACCCTAAAGGGGTATTATAGTCATGTTA
1 AGTCATTTTACCCT-ACAGGGGTATTACAGTCATTTTACCCTAAAGGGGTATTATAGTCATGTTA
*
93150241 CCCTAC-AGGGCT-TTT-A
65 ACCTACGAGGG-TATTTCA
* * *
93150257 TAGTCATTTTACCCTACAGGGGTGTTACAGTCATTTTACCTTATAA-GGGTATT-TCAGTCATTT
1 -AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTA-AAGGGGTATTAT-AGTCATGT
93150320 TAACCTACGAGGGTATTTCA
63 TAACCTACGAGGGTATTTCA
*
93150340 A-TCATTTTACCCTATAGGGGTATT
1 AGTCATTTTACCCTACAGGGGTATT
93150364 TTGGATATTA
Statistics
Matches: 94, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
80 1 0.01
81 79 0.84
82 13 0.14
83 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (82 bp):
AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTAAAGGGGTATTATAGTCATGTTAA
CCTACGAGGGTATTTCA
Found at i:93153765 original size:13 final size:14
Alignment explanation
Indices: 93153747--93153776 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
93153737 GCTCTAATGA
93153747 TTTGAACTGAA-CT
1 TTTGAACTGAATCT
93153760 TTTGAACTGAATCT
1 TTTGAACTGAATCT
93153774 TTT
1 TTT
93153777 TGAGTTAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (14 bp):
TTTGAACTGAATCT
Found at i:93155010 original size:21 final size:19
Alignment explanation
Indices: 93154976--93155037 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
93154966 TAAGTTATGT
93154976 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
93154998 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
93155020 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
93155038 GTATCTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:93155100 original size:21 final size:22
Alignment explanation
Indices: 93155063--93155111 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
93155053 AAATATGGTA
*
93155063 AAATAATTAGTATTAAAAA-AT
1 AAATAATTAGTAATAAAAATAT
93155084 AAATAATATA-TAATAAAAATAT
1 AAATAAT-TAGTAATAAAAATAT
*
93155106 ATATAA
1 AAATAA
93155112 GAAAGATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AAATAATTAGTAATAAAAATAT
Found at i:93155164 original size:18 final size:18
Alignment explanation
Indices: 93155141--93155181 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
93155131 GAATATTGAA
93155141 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
93155159 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
93155177 AAATA
1 TAATA
93155182 TAATATGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:93155555 original size:14 final size:14
Alignment explanation
Indices: 93155525--93155599 Score: 64
Period size: 14 Copynumber: 5.3 Consensus size: 14
93155515 ACAATTTTAA
93155525 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
93155537 GAAATATATAAAAT
1 AAAATATATAAAAT
*
93155551 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
93155565 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
93155581 AAAATATATAATAAT
1 AAAATATATAA-AAT
93155596 AAAA
1 AAAA
93155600 AATAATGGAT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
12 8 0.16
13 3 0.06
14 17 0.35
15 14 0.29
16 7 0.14
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:93155568 original size:17 final size:17
Alignment explanation
Indices: 93155527--93155648 Score: 53
Period size: 17 Copynumber: 7.1 Consensus size: 17
93155517 AATTTTAAAA
*
93155527 AATAT-ATAAAGAAATAT
1 AATATAATAAA-ATATAT
*
93155544 -ATAAAATAAAATATAT
1 AATATAATAAAATATAT
*
93155560 AATATAATATAAT-T-T
1 AATATAATAAAATATAT
*
93155575 -ATA-GATAAAATATAT
1 AATATAATAAAATATAT
93155590 AATAATAA-AAAATAATGGAT
1 AAT-ATAATAAAAT-AT--AT
* *
93155610 AATAATAGTAATATATAACT
1 AAT-ATAATAAAATAT-A-T
93155630 AATATTAA-AAAATATAT
1 AATA-TAATAAAATATAT
93155647 AA
1 AA
93155649 AGTATTTAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
13 6 0.08
14 4 0.05
15 2 0.03
16 11 0.14
17 24 0.30
18 4 0.05
19 8 0.10
20 17 0.21
21 4 0.05
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (17 bp):
AATATAATAAAATATAT
Found at i:93155568 original size:26 final size:30
Alignment explanation
Indices: 93155525--93155593 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 30
93155515 ACAATTTTAA
93155525 AAAATATATAA-AGAAATAT-A-TA-AAAT
1 AAAATATATAATAGAAATATAATTATAAAT
* *
93155551 AAAATATATAATA-TAATATAATTTATAGAT
1 AAAATATATAATAGAAATATAA-TTATAAAT
93155581 AAAATATATAATA
1 AAAATATATAATA
93155594 ATAAAAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
26 16 0.44
27 2 0.06
29 2 0.06
30 16 0.44
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (30 bp):
AAAATATATAATAGAAATATAATTATAAAT
Found at i:93155594 original size:12 final size:12
Alignment explanation
Indices: 93155505--93155594 Score: 53
Period size: 12 Copynumber: 7.1 Consensus size: 12
93155495 CAAATTTAGT
93155505 AAATA-ATAATA
1 AAATATATAATA
* *
93155516 CAAT-TTTAA-A
1 AAATATATAATA
93155526 AAATATATAA-A
1 AAATATATAATA
93155537 GAAATATATAAAATA
1 -AAATATAT--AATA
93155552 AAATATATAATA
1 AAATATATAATA
93155564 TAATATAATTTATAGATA
1 -AA-AT-A--TATA-ATA
93155582 AAATATATAATA
1 AAATATATAATA
93155594 A
1 A
93155595 TAAAAAATAA
Statistics
Matches: 63, Mismatches: 4, Indels: 23
0.70 0.04 0.26
Matches are distributed among these distances:
10 4 0.06
11 11 0.17
12 16 0.25
13 6 0.10
14 12 0.19
15 3 0.05
16 2 0.03
17 6 0.10
18 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (12 bp):
AAATATATAATA
Found at i:93155634 original size:11 final size:11
Alignment explanation
Indices: 93155522--93155649 Score: 59
Period size: 11 Copynumber: 11.4 Consensus size: 11
93155512 AATACAATTT
*
93155522 TAAAAAATATA
1 TAAATAATATA
*
93155533 TAAAGAAATATA
1 TAAA-TAATATA
93155545 TAAAATAA-A-A
1 T-AAATAATATA
*
93155555 TATATAATATA
1 TAAATAATATA
* *
93155566 -ATATAATTTA
1 TAAATAATATA
* *
93155576 TAGATAAAATA
1 TAAATAATATA
93155587 TATAATAATA-A
1 TA-AATAATATA
*
93155598 AAAATAATGGATAA
1 TAAATAAT--AT-A
93155612 TAATAGTAATATA
1 TAA-A-TAATATA
*
93155625 TAACTAATAT-
1 TAAATAATATA
*
93155635 TAAAAAATATA
1 TAAATAATATA
93155646 TAAA
1 TAAA
93155650 GTATTTAAAG
Statistics
Matches: 91, Mismatches: 13, Indels: 26
0.70 0.10 0.20
Matches are distributed among these distances:
9 5 0.05
10 26 0.29
11 27 0.30
12 16 0.18
13 7 0.08
14 5 0.05
15 1 0.01
16 4 0.04
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (11 bp):
TAAATAATATA
Found at i:93157816 original size:205 final size:206
Alignment explanation
Indices: 93157246--93158006 Score: 1159
Period size: 206 Copynumber: 3.7 Consensus size: 206
93157236 AAATCTGCTT
* * * *
93157246 CTTCGATTTGTCCTCTGACAATACAGAGATGCCAAATCATCTTATATTTGCTTCAGCGAAAGCAC
1 CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * *
93157311 GCGAAAGCCAAATGAGCTATGTCTTCGATTTGCTCCTTGTAAGCACGAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * ** * * *
93157376 GGATCTGCTTCTGTTTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTTCTATGTGTCTGCTCTCCGTCGAATATG
93157441 GAGATGCCAAA
196 GAGATGCCAAA
* * * *
93157452 CTTTGATTTATTCTCTGAAAATACAGAGATGCCAAATAATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
93157517 GTGAAAGCTAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATTT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
*
93157581 TGGACCTGCTTCAGTATAAACATCTGAAGGCCAGATCTTCTATGTGTCTGCTCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTTCTATGTGTCTGCTCTCCGTCGAATAT
*
93157646 GGAGACGCCAAA
195 GGAGATGCCAAA
* *
93157658 CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTATATTTGCTTCATCGTAA-CAC
1 CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
93157722 GTGAAAGCCAATTCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
93157787 GGATCTGCTTCAGTATAAACATCTGAAGGCCAAAT-TTGCTATGTGTCTGCTCTCCGTCGAATAT
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTT-CTATGTGTCTGCTCTCCGTCGAATAT
93157851 GGAGATGCCAAA
195 GGAGATGCCAAA
* *
93157863 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
93157928 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGTATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
93157993 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
93158007 CCAGATCTGC
Statistics
Matches: 505, Mismatches: 45, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
204 3 0.01
205 191 0.38
206 302 0.60
207 9 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTTCTATGTGTCTGCTCTCCGTCGAATATG
GAGATGCCAAA
Found at i:93181170 original size:51 final size:51
Alignment explanation
Indices: 93181111--93181208 Score: 178
Period size: 51 Copynumber: 1.9 Consensus size: 51
93181101 TCCATCACCA
*
93181111 CTAATTACAACATAAGGACCTCCCATATAATAAGTCATGGCAATTAATGGT
1 CTAATTACAACATAAGGACCTCCCATATAATAAGCCATGGCAATTAATGGT
*
93181162 CTAATTACAACATAAGGACCTCCCATTTAATAAGCCATGGCAATTAA
1 CTAATTACAACATAAGGACCTCCCATATAATAAGCCATGGCAATTAA
93181209 GCATGTTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (51 bp):
CTAATTACAACATAAGGACCTCCCATATAATAAGCCATGGCAATTAATGGT
Found at i:93184646 original size:26 final size:27
Alignment explanation
Indices: 93184617--93184674 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
93184607 TACATTGATG
93184617 TATGAAAT-TGAGATAAAGGTTGTTTA
1 TATGAAATATGAGATAAAGGTTGTTTA
* * *
93184643 TATGTACTCATGAGATAAAGTTTGTTTA
1 TATGAAAT-ATGAGATAAAGGTTGTTTA
93184671 TATG
1 TATG
93184675 TACTCATGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 6 0.22
28 21 0.78
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.41
Consensus pattern (27 bp):
TATGAAATATGAGATAAAGGTTGTTTA
Found at i:93184656 original size:28 final size:28
Alignment explanation
Indices: 93184625--93184685 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
93184615 TGTATGAAAT
93184625 TGAGATAAAGGTTGTTTATATGTACTCA
1 TGAGATAAAGGTTGTTTATATGTACTCA
*
93184653 TGAGATAAAGTTTGTTTATATGTACTCA
1 TGAGATAAAGGTTGTTTATATGTACTCA
93184681 TGAGA
1 TGAGA
93184686 CTAACATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (28 bp):
TGAGATAAAGGTTGTTTATATGTACTCA
Found at i:93188532 original size:21 final size:22
Alignment explanation
Indices: 93188508--93188565 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
93188498 AATGAGTGTA
93188508 TCATAGCATATCATGTGCAT-C
1 TCATAGCATATCATGTGCATAC
* *
93188529 TCATAACATATCATGAGCATAC
1 TCATAGCATATCATGTGCATAC
93188551 -CAT-GTCATATCATGT
1 TCATAG-CATATCATGT
93188566 ATAACTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 30 0.97
22 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (22 bp):
TCATAGCATATCATGTGCATAC
Found at i:93191559 original size:716 final size:716
Alignment explanation
Indices: 93190186--93191622 Score: 2847
Period size: 716 Copynumber: 2.0 Consensus size: 716
93190176 AAGATCCCTT
93190186 TTCCACCATAATGACGCCACTTTTTTAGCTCCTTAGTGGCGTCACTTAACCACTTTGCTAGGGGC
1 TTCCACCATAATGACGCCACTTTTTTAGCTCCTTAGTGGCGTCACTTAACCACTTTGCTAGGGGC
93190251 TCTCTTGTGTTACATTTTACCCACATCTTTTAATATAGTCACCTATCCAATGCCCCTAACTCCTT
66 TCTCTTGTGTTACATTTTACCCACATCTTTTAATATAGTCACCTATCCAATGCCCCTAACTCCTT
*
93190316 AAGTCCAAAATTCAAAAATTCTATCGGGTTTTGGCCAACACATGGGCCTTCCATAGGCCCATTTA
131 AAGTCCAAAATTCAAAAATTCTATCGGGTTTTGGCCAACACATGGGCCTCCCATAGGCCCATTTA
93190381 CACACTCCAATTATGAATTTCACAACCAAATACCGAATTTTAAAAATTTTACCAAATTCTCAAAA
196 CACACTCCAATTATGAATTTCACAACCAAATACCGAATTTTAAAAATTTTACCAAATTCTCAAAA
*
93190446 ATTACGAAAATCCCGAAAATCAGGGTGTTACAACTCTACCCTCCTTAAAGAAATTTCGGCCTTGA
261 ATTACGAAAATCCCAAAAATCAGGGTGTTACAACTCTACCCTCCTTAAAGAAATTTCGGCCTTGA
93190511 AATTTTACCTGATCCAAATAGTTGAGGGTATTGTTGACGCATCGCCTCCTCTGACTCCCAAGTAG
326 AATTTTACCTGATCCAAATAGTTGAGGGTATTGTTGACGCATCGCCTCCTCTGACTCCCAAGTAG
93190576 CTTCTTCTTTGCCATGGTTTCTCCAAAGTACCTTCACCAATGGGACTGACTTCCTTCTCAACACC
391 CTTCTTCTTTGCCATGGTTTCTCCAAAGTACCTTCACCAATGGGACTGACTTCCTTCTCAACACC
93190641 TTGACGTCGCGATCAAGTATCTGCACAGGTTCTTCTTCGAAGGTCAAATCTAACTGCACCTCAAT
456 TTGACGTCGCGATCAAGTATCTGCACAGGTTCTTCTTCGAAGGTCAAATCTAACTGCACCTCAAT
93190706 TTCTACAACTGGCACGATATGAGTAGGATCAGAACGATATCGCCTTAGCATGGACACGTAAAAGA
521 TTCTACAACTGGCACGATATGAGTAGGATCAGAACGATATCGCCTTAGCATGGACACGTAAAAGA
93190771 CGTCGTGAATACGATCCAGCTCTAGAGGTAACTCTAGCTGATAAGCCACCGGCCCTATCCGCTTA
586 CGTCGTGAATACGATCCAGCTCTAGAGGTAACTCTAGCTGATAAGCCACCGGCCCTATCCGCTTA
93190836 AGGATCTGATAAGGCCCAATGAACCGTGGACTCAACTTGCCCTTCTTACCAAACCTCAAAATCTT
651 AGGATCTGATAAGGCCCAATGAACCGTGGACTCAACTTGCCCTTCTTACCAAACCTCAAAATCTT
93190901 C
716 C
93190902 TTCCACCATAATGACGCCACTTTTTTAGCTCCTTAGTGGCGTCACTTAACCACTTTGCTAGGGGC
1 TTCCACCATAATGACGCCACTTTTTTAGCTCCTTAGTGGCGTCACTTAACCACTTTGCTAGGGGC
93190967 TCTCTTGTGTTACATTTTACCCACATCTTTTAATATAGTCACCTATCCAATGCCCCTAACTCCTT
66 TCTCTTGTGTTACATTTTACCCACATCTTTTAATATAGTCACCTATCCAATGCCCCTAACTCCTT
93191032 AAGTCCAAAATTCAAAAATTCTATCGGGTTTTGGCCAACACATGGGCCTCCCATAGGCCCATTTA
131 AAGTCCAAAATTCAAAAATTCTATCGGGTTTTGGCCAACACATGGGCCTCCCATAGGCCCATTTA
93191097 CACACTCCAATTATGAATTTCACAACCAAATACCGAATTTTAAAAATTTTACCAAATTCTCAAAA
196 CACACTCCAATTATGAATTTCACAACCAAATACCGAATTTTAAAAATTTTACCAAATTCTCAAAA
*
93191162 ATTACGAAAATCCCAAAAATTAGGGTGTTACAACTCTACCCTCCTTAAAGAAATTTCGGCCTTGA
261 ATTACGAAAATCCCAAAAATCAGGGTGTTACAACTCTACCCTCCTTAAAGAAATTTCGGCCTTGA
93191227 AATTTTACCTGATCCAAATAGTTGAGGGTATTGTTGACGCATCGCCTCCTCTGACTCCCAAGTAG
326 AATTTTACCTGATCCAAATAGTTGAGGGTATTGTTGACGCATCGCCTCCTCTGACTCCCAAGTAG
93191292 CTTCTTCTTTGCCATGGTTTCTCCAAAGTACCTTCACCAATGGGACTGACTTCCTTCTCAACACC
391 CTTCTTCTTTGCCATGGTTTCTCCAAAGTACCTTCACCAATGGGACTGACTTCCTTCTCAACACC
93191357 TTGACGTCGCGATCAAGTATCTGCACAGGTTCTTCTTCGAAGGTCAAATCTAACTGCACCTCAAT
456 TTGACGTCGCGATCAAGTATCTGCACAGGTTCTTCTTCGAAGGTCAAATCTAACTGCACCTCAAT
93191422 TTCTACAACTGGCACGATATGAGTAGGATCAGAACGATATCGCCTTAGCATGGACACGTAAAAGA
521 TTCTACAACTGGCACGATATGAGTAGGATCAGAACGATATCGCCTTAGCATGGACACGTAAAAGA
93191487 CGTCGTGAATACGATCCAGCTCTAGAGGTAACTCTAGCTGATAAGCCACCGGCCCTATCCGCTTA
586 CGTCGTGAATACGATCCAGCTCTAGAGGTAACTCTAGCTGATAAGCCACCGGCCCTATCCGCTTA
93191552 AGGATCTGATAAGGCCCAATGAACCGTGGACTCAACTTGCCCTTCTTACCAAACCTCAAAATCTT
651 AGGATCTGATAAGGCCCAATGAACCGTGGACTCAACTTGCCCTTCTTACCAAACCTCAAAATCTT
93191617 C
716 C
93191618 TTCCA
1 TTCCA
93191623 AGGCGAAACC
Statistics
Matches: 718, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
716 718 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (716 bp):
TTCCACCATAATGACGCCACTTTTTTAGCTCCTTAGTGGCGTCACTTAACCACTTTGCTAGGGGC
TCTCTTGTGTTACATTTTACCCACATCTTTTAATATAGTCACCTATCCAATGCCCCTAACTCCTT
AAGTCCAAAATTCAAAAATTCTATCGGGTTTTGGCCAACACATGGGCCTCCCATAGGCCCATTTA
CACACTCCAATTATGAATTTCACAACCAAATACCGAATTTTAAAAATTTTACCAAATTCTCAAAA
ATTACGAAAATCCCAAAAATCAGGGTGTTACAACTCTACCCTCCTTAAAGAAATTTCGGCCTTGA
AATTTTACCTGATCCAAATAGTTGAGGGTATTGTTGACGCATCGCCTCCTCTGACTCCCAAGTAG
CTTCTTCTTTGCCATGGTTTCTCCAAAGTACCTTCACCAATGGGACTGACTTCCTTCTCAACACC
TTGACGTCGCGATCAAGTATCTGCACAGGTTCTTCTTCGAAGGTCAAATCTAACTGCACCTCAAT
TTCTACAACTGGCACGATATGAGTAGGATCAGAACGATATCGCCTTAGCATGGACACGTAAAAGA
CGTCGTGAATACGATCCAGCTCTAGAGGTAACTCTAGCTGATAAGCCACCGGCCCTATCCGCTTA
AGGATCTGATAAGGCCCAATGAACCGTGGACTCAACTTGCCCTTCTTACCAAACCTCAAAATCTT
C
Found at i:93197249 original size:24 final size:25
Alignment explanation
Indices: 93197222--93197273 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
93197212 GCCTAGCCTC
* *
93197222 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACAGAGGCAAAGCCCT
**
93197246 TTTTGGTAAACAGAGGCAAAGCCCT
1 TTTTAATAAACAGAGGCAAAGCCCT
93197271 TTT
1 TTT
93197274 CGCACTTCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
TTTTAATAAACAGAGGCAAAGCCCT
Found at i:93197343 original size:19 final size:20
Alignment explanation
Indices: 93197319--93197361 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
93197309 CATGTAATGA
*
93197319 GTGTA-TCATAGCATATCAT
1 GTGTACTCATAACATATCAT
93197338 GTGTATCTCATAACATATCAT
1 GTGTA-CTCATAACATATCAT
93197359 GTG
1 GTG
93197362 CATACCATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
21 16 0.76
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (20 bp):
GTGTACTCATAACATATCAT
Found at i:93199247 original size:19 final size:20
Alignment explanation
Indices: 93199223--93199260 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
93199213 CACAACCAAA
*
93199223 TACCAAATT-TTAAAAATTT
1 TACCAAATTCTCAAAAATTT
93199242 TACCAAATTCTCAAAAATT
1 TACCAAATTCTCAAAAATT
93199261 ACAAAAATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (20 bp):
TACCAAATTCTCAAAAATTT
Found at i:93208797 original size:24 final size:23
Alignment explanation
Indices: 93208770--93208820 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
93208760 ACCTAAAAAG
*
93208770 AAAATCACAAAAAATAAAGAATAA
1 AAAATAACAAAAAATAAA-AATAA
**
93208794 AAAATAATTAAAAATAAAAATAA
1 AAAATAACAAAAAATAAAAATAA
93208817 AAAA
1 AAAA
93208821 CCAAGTTGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (23 bp):
AAAATAACAAAAAATAAAAATAA
Found at i:93216167 original size:22 final size:23
Alignment explanation
Indices: 93216129--93216173 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
93216119 GTTTGTTAAT
93216129 GTTTATATATTTTATT-AATTTA
1 GTTTATATATTTTATTAAATTTA
*
93216151 GTTTTTAT-TTTTAATTAAATTTA
1 GTTTATATATTTT-ATTAAATTTA
93216174 ATTGTTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 10 0.50
23 6 0.30
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (23 bp):
GTTTATATATTTTATTAAATTTA
Found at i:93217874 original size:9 final size:9
Alignment explanation
Indices: 93217826--93217877 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
93217816 AAAGTAAAAA
93217826 ATAAAAATT
1 ATAAAAATT
*
93217835 TTAAAAATAT
1 ATAAAAAT-T
*
93217845 TTAAAAATAT
1 ATAAAAAT-T
* *
93217855 ATCAAATTT
1 ATAAAAATT
93217864 ATAAAAATT
1 ATAAAAATT
93217873 ATAAA
1 ATAAA
93217878 TTTGTCTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
9 20 0.56
10 16 0.44
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (9 bp):
ATAAAAATT
Found at i:93217878 original size:17 final size:19
Alignment explanation
Indices: 93217846--93217880 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
93217836 TAAAAATATT
93217846 TAAAAATATATCAAATTTA
1 TAAAAATATATCAAATTTA
93217865 TAAAAAT-TAT-AAATTT
1 TAAAAATATATCAAATTT
93217881 GTCTCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAAAATATATCAAATTTA
Found at i:93217972 original size:21 final size:21
Alignment explanation
Indices: 93217939--93217981 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
93217929 CTAGATATGT
* * *
93217939 TTTTTAGTATTTTTTTACATA
1 TTTTTAATATTTTATAACATA
*
93217960 TTTTTAATGTTTTATAACATA
1 TTTTTAATATTTTATAACATA
93217981 T
1 T
93217982 AATGTTTTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (21 bp):
TTTTTAATATTTTATAACATA
Found at i:93219704 original size:13 final size:13
Alignment explanation
Indices: 93219686--93219711 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93219676 GTGTTATCAC
93219686 TTATGACTTTGAG
1 TTATGACTTTGAG
93219699 TTATGACTTTGAG
1 TTATGACTTTGAG
93219712 GTAACTTCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (13 bp):
TTATGACTTTGAG
Found at i:93227926 original size:20 final size:19
Alignment explanation
Indices: 93227866--93227926 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 19
93227856 AAATTGAAAC
* *
93227866 AAAATTAAAACATTAGAACT
1 AAAATTAAAATATTA-AAAT
*
93227886 AAAATTAAAAATAAATAAAAT
1 AAAATT-AAAAT-ATTAAAAT
93227907 AAAATTATAAATATTAAAAT
1 AAAATTA-AAATATTAAAAT
93227927 TGTTAAAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 14 0.41
21 17 0.50
22 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAATTAAAATATTAAAAT
Found at i:93229370 original size:174 final size:175
Alignment explanation
Indices: 93229142--93229810 Score: 1053
Period size: 174 Copynumber: 3.8 Consensus size: 175
93229132 GTGAAAGCCA
* *
93229142 AAAT-TGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCT
1 AAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACT
* *
93229206 TCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGCCGAAATGGAGATGCCAG
66 TCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAG
93229271 ATCTGTTATCTTGGATCTACTTTGGTGTGGGAACATCCGAAAGTC
131 ATCTGTTATCTTGGATCTACTTTGGTGTGGGAACATCCGAAAGTC
* **
93229316 AAATCTGATATGTCTTCGATTTGTTCCTTGT-AACACAAGGATGCCAAATCATCTTGGATCTGTT
1 AAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACT
* * *
93229380 TCAGTGAAATCATTTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAG
66 TCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAG
**
93229445 ATCTGTTATCTTGGATCTTTTTTGGTGTGGGAACATCCGAAAGTC
131 ATCTGTTATCTTGGATCTACTTTGGTGTGGGAACATCCGAAAGTC
* *
93229490 AAATCTGCTACGCCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACT
1 AAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACT
* *
93229555 TCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGAAATGGAGATGCCAT
66 TCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAG
** * * *
93229620 ATCTGTTATCTTGGATCTACTTCAGTGT--AAACA-CGTGAAGGTC
131 ATCTGTTATCTTGGATCTACTTTGGTGTGGGAACATC-CGAAAGTC
* *
93229663 AGATCTGCTATG-CTTTCGATTTGTCCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTAC
1 AAATCTGCTATGTC-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTAC
*
93229727 TTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCTGTCGAAATGGAGATGCCA
65 TTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCA
*
93229792 GATTTGTTATCTTGGATCT
130 GATCTGTTATCTTGGATCT
93229811 GCTTCAGTGT
Statistics
Matches: 457, Mismatches: 34, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
172 2 0.00
173 149 0.33
174 167 0.37
175 139 0.30
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (175 bp):
AAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACT
TCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAG
ATCTGTTATCTTGGATCTACTTTGGTGTGGGAACATCCGAAAGTC
Found at i:93229742 original size:173 final size:173
Alignment explanation
Indices: 93229121--93229851 Score: 1017
Period size: 173 Copynumber: 4.2 Consensus size: 173
93229111 GATTTGCTTT
*
93229121 AGTGTAAACACGTGAAAGCCAAAAT-TGCTATG-TCTTCGATTTG-CTCCTTGTAAACACAAGGA
1 AGTGTAAACACGTGAAAGTC-AAATCTGCTATGCT-TTCGATTTGTC-CCTTGTAAACACAAGGA
* *
93229183 TGCCAAATCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCT
63 TGCCAAATCATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCT
* *
93229248 CTCCGCCGAAATGGAGATGCCAGATCTGTTATCTTGGATCTACTTT
128 CTCCGTCGAAATGGAGATGCCAGATCTGTTATCTTGGATCTACTTC
* * * * *
93229294 GGTGTGGGAACATC-CGAAAGTCAAATCTGATATG-TCTTCGATTTGTTCCTTGT-AACACAAGG
1 AGTGT--AAACA-CGTGAAAGTCAAATCTGCTATGCT-TTCGATTTGTCCCTTGTAAACACAAGG
** * * *
93229356 ATGCCAAATCATCTTGGATCTGTTTCAGTGAAATCATTTAAAGGTTAGATCTGCTATGTATCTAC
62 ATGCCAAATCATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGC
** *
93229421 TCTCCGTCGAAATGGAGATGCCAGATCTGTTATCTTGGATCTTTTTT
127 TCTCCGTCGAAATGGAGATGCCAGATCTGTTATCTTGGATCTACTTC
* * * * * *
93229468 GGTGTGGGAACATC-CGAAAGTCAAATCTGCTACGCCTTCGATTTGTTCCTTGTAAACACAAGGA
1 AGTGT--AAACA-CGTGAAAGTCAAATCTGCTATGCTTTCGATTTGTCCCTTGTAAACACAAGGA
93229532 TGCCAAATCATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCT
63 TGCCAAATCATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCT
* *
93229597 CTCCGTTGAAATGGAGATGCCATATCTGTTATCTTGGATCTACTTC
128 CTCCGTCGAAATGGAGATGCCAGATCTGTTATCTTGGATCTACTTC
* *
93229643 AGTGTAAACACGTGAAGGTCAGATCTGCTATGCTTTCGATTTGTCCCTTGTAAACACAAGGATGC
1 AGTGTAAACACGTGAAAGTCAAATCTGCTATGCTTTCGATTTGTCCCTTGTAAACACAAGGATGC
93229708 CAAATCATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTC
66 CAAATCATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTC
* * *
93229773 TGTCGAAATGGAGATGCCAGATTTGTTATCTTGGATCTGCTTC
131 CGTCGAAATGGAGATGCCAGATCTGTTATCTTGGATCTACTTC
* * *
93229816 AGTGTAAACACGTGAAGGCCAGATCTGCTATGCTTT
1 AGTGTAAACACGTGAAAGTCAAATCTGCTATGCTTT
93229852 GGTCTGTTAC
Statistics
Matches: 509, Mismatches: 41, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
172 1 0.00
173 193 0.38
174 166 0.33
175 148 0.29
176 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (173 bp):
AGTGTAAACACGTGAAAGTCAAATCTGCTATGCTTTCGATTTGTCCCTTGTAAACACAAGGATGC
CAAATCATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTC
CGTCGAAATGGAGATGCCAGATCTGTTATCTTGGATCTACTTC
Found at i:93229832 original size:86 final size:84
Alignment explanation
Indices: 93229192--93229847 Score: 296
Period size: 86 Copynumber: 7.6 Consensus size: 84
93229182 ATGCCAAATC
* * * * *
93229192 ATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGCCGA
1 ATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTGTCGA
93229257 AATGGAGATGCCAGATCTGTT
66 AATGGAGATGCCA-AT-TGTT
** * * * * * * *
93229278 ATCTTGGATCTACTTTGGTGTGGGAA-CATCCGAAAGTCAAATCTGATATGTCTTCGATTTGTTC
1 ATCTTGGATCTAC-TT-CAGT-GAAATCATCTGAAGGTCAGATCTGCTATG---T--ATCTGCTC
* *
93229342 -CTTGTAAC-ACAA--G-GATGCCAA--ATC
58 TC-TGT--CGA-AATGGAGATGCCAATTGTT
** * * * * *
93229366 ATCTTGGATCTGTTTCAGTGAAATCATTTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGA
1 ATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTGTCGA
93229431 AATGGAGATGCCAGATCTGTT
66 AATGGAGATGCCA-AT-TGTT
** ** * * * * * * *
93229452 ATCTTGGATCTTTTTTGGTGTGGGAA-CATCCGAAAGTCAAATCTGCTACGCCTTCGATTTGTTC
1 ATCTTGGATC-TACTT-CAGT-GAAATCATCTGAAGGTCAGATCTGCTATG---T--ATCTGCTC
*** * *
93229516 -CT-T-GTAAACACAAGGATGCCAA--ATC
58 TCTGTCG-AAA-TGGA-GATGCCAATTGTT
* * *
93229541 ATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGA
1 ATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTGTCGA
93229606 AATGGAGATGCCATATCTGTT
66 AATGGAGATGCCA-AT-TGTT
* *
93229627 ATCTTGGATCTACTTCAGTGTAAA-CA-CGTGAAGGTCAGATCTGCTATGCTTTC-GAT-T-TGT
1 ATCTTGGATCTACTTCAGTG-AAATCATC-TGAAGGTCAGATCTGCTATG-TATCTGCTCTCTGT
*** * *
93229687 CCCTTGTAAACACAAGGATGCCAA--ATC
63 --C--G-AAA-TGGA-GATGCCAATTGTT
*
93229714 ATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCTGTCGA
1 ATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTGTCGA
93229779 AATGGAGATGCCAGATTTGTT
66 AATGGAGATGCCA-A-TTGTT
* *
93229800 ATCTTGGATCTGCTTCAGTGTAAA-CA-CGTGAAGGCCAGATCTGCTATG
1 ATCTTGGATCTACTTCAGTG-AAATCATC-TGAAGGTCAGATCTGCTATG
93229848 CTTTGGTCTG
Statistics
Matches: 415, Mismatches: 93, Indels: 124
0.66 0.15 0.20
Matches are distributed among these distances:
79 3 0.01
80 1 0.00
81 8 0.02
82 28 0.07
83 7 0.02
84 10 0.02
85 8 0.02
86 135 0.33
87 83 0.20
88 58 0.14
89 23 0.06
90 3 0.01
91 14 0.03
92 11 0.03
93 19 0.05
94 1 0.00
95 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (84 bp):
ATCTTGGATCTACTTCAGTGAAATCATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTGTCGA
AATGGAGATGCCAATTGTT
Found at i:93229894 original size:349 final size:346
Alignment explanation
Indices: 93229134--93229825 Score: 980
Period size: 349 Copynumber: 2.0 Consensus size: 346
93229124 GTAAACACGT
* * * * *
93229134 GAAAGCCAAAAT-TGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTG
1 GAAAGCC-AAATCTGCTACGCCTTCGATCTGTTCCTTGTAAACACAAGGACGCC-AATCATCTTG
* *
93229198 GATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGCCGAAATGGA
64 GATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGCCGAAATGGA
** *
93229263 GATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGGGAACATCCGAAAGTCAAATCTGATATG
129 GATGCCAGATCTGTTATCTTGGATCTACTTCAGTGT-GAAACATCCGAAAGTCAAATCTGATATG
* **
93229328 TCTTCGATTTGTTCCTTGTAACACAAGGATGCCAAATCATCTTGGATCTGTTTCAGTGAAATCAT
193 TCTTCGATTTGTCCCTTGTAACACAAGGATGCCAAATCATCTTGGATCTACTTCAGTGAAATCAT
*
93229393 TTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCTTG
258 CTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCTTG
** ** *
93229458 GATCTTTTTTGGTGTGGGAACATCC
323 GATCTGCTTCAGTGT-GAAACATCC
* * *
93229483 GAAAGTCAAATCTGCTACGCCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
1 GAAAGCCAAATCTGCTACGCCTTCGATCTGTTCCTTGTAAACACAAGGACGCC-AATCATCTTGG
**
93229548 ATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGAAATGGAG
65 ATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGCCGAAATGGAG
* * * * *
93229613 ATGCCATATCTGTTATCTTGGATCTACTTCAGTGT-AAACA-CGTGAAGGTCAGATCTGCTATG-
130 ATGCCAGATCTGTTATCTTGGATCTACTTCAGTGTGAAACATC-CGAAAGTCAAATCTGATATGT
93229675 CTTTCGATTTGTCCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCAGTGAAATCA
194 C-TTCGATTTGTCCCTTGT-AACACAAGGATGCCAAATCATCTTGGATCTACTTCAGTGAAATCA
* * * *
93229740 TCTGAAGGTTAGATCTGCTATGTATCTGCTCTCTGTCGAAATGGAGATGCCAGATTTGTTATCTT
257 TCTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCTT
93229805 GGATCTGCTTCAGTGT-AAACA
322 GGATCTGCTTCAGTGTGAAACA
93229826 CGTGAAGGCC
Statistics
Matches: 310, Mismatches: 29, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
346 6 0.02
347 36 0.12
348 119 0.38
349 149 0.48
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (346 bp):
GAAAGCCAAATCTGCTACGCCTTCGATCTGTTCCTTGTAAACACAAGGACGCCAATCATCTTGGA
TCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGCCGAAATGGAGA
TGCCAGATCTGTTATCTTGGATCTACTTCAGTGTGAAACATCCGAAAGTCAAATCTGATATGTCT
TCGATTTGTCCCTTGTAACACAAGGATGCCAAATCATCTTGGATCTACTTCAGTGAAATCATCTA
AAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCTTGGAT
CTGCTTCAGTGTGAAACATCC
Found at i:93230793 original size:39 final size:39
Alignment explanation
Indices: 93230739--93230814 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
93230729 GGTTTTCGCC
93230739 CTGAATTATTCTCCTTTAGACAAAGTACTTTTTGACTCT
1 CTGAATTATTCTCCTTTAGACAAAGTACTTTTTGACTCT
* *
93230778 CTGAATTCTTTTCCTTTAGACAAAGTACTTTTTGACT
1 CTGAATTATTCTCCTTTAGACAAAGTACTTTTTGACT
93230815 GAGTCTGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.45
Consensus pattern (39 bp):
CTGAATTATTCTCCTTTAGACAAAGTACTTTTTGACTCT
Found at i:93235734 original size:28 final size:28
Alignment explanation
Indices: 93235694--93235750 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
93235684 CTCCTCCTCC
93235694 TTTACTGGCTCATTGATTGGTACTTCGG
1 TTTACTGGCTCATTGATTGGTACTTCGG
93235722 TTTACTGGCTCATTGATTGGTACTTCGG
1 TTTACTGGCTCATTGATTGGTACTTCGG
93235750 T
1 T
93235751 CTTTTTCTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.18, G:0.25, T:0.44
Consensus pattern (28 bp):
TTTACTGGCTCATTGATTGGTACTTCGG
Found at i:93237967 original size:14 final size:16
Alignment explanation
Indices: 93237936--93237968 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
93237926 CGATGCGATA
93237936 AAATGCTATGAGATGC
1 AAATGCTATGAGATGC
93237952 AAATGC-ATGA-ATGC
1 AAATGCTATGAGATGC
93237966 AAA
1 AAA
93237969 AAGGACATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 4 0.24
16 6 0.35
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.21
Consensus pattern (16 bp):
AAATGCTATGAGATGC
Found at i:93242494 original size:20 final size:19
Alignment explanation
Indices: 93242433--93242494 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 19
93242423 AAATTGAAAC
* *
93242433 AAAATTAAAACATTAGAACT
1 AAAATTAAAATATTA-AAAT
*
93242453 AAAATTAAAAAATAAATAAAAT
1 AAAATT--AAAAT-ATTAAAAT
93242475 AAAATTATAAATATTAAAAT
1 AAAATTA-AAATATTAAAAT
93242495 TGTTAAAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 14 0.41
21 4 0.12
22 13 0.38
23 3 0.09
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAATTAAAATATTAAAAT
Found at i:93243714 original size:38 final size:38
Alignment explanation
Indices: 93243672--93243760 Score: 119
Period size: 38 Copynumber: 2.3 Consensus size: 38
93243662 AAACAACAGA
* *
93243672 CATGCTTAACATGTATTC-AGTTCAACATTAGA-AGTAGG
1 CATGCTTAACATGTATTCGA-TTCAACAATA-ATAGTAAG
93243710 CATGCTTAACATGTATTCGATTCAACAATAATAGTAAG
1 CATGCTTAACATGTATTCGATTCAACAATAATAGTAAG
*
93243748 CATGCTGAACATG
1 CATGCTTAACATG
93243761 CAATCGGTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
37 1 0.02
38 44 0.96
39 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (38 bp):
CATGCTTAACATGTATTCGATTCAACAATAATAGTAAG
Found at i:93245908 original size:32 final size:32
Alignment explanation
Indices: 93245867--93245936 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
93245857 GTTTCTAGCA
93245867 AATCATGTTTCACCACTTGATTTATTAAATTT
1 AATCATGTTTCACCACTTGATTTATTAAATTT
93245899 AATCATGTTTCACCACTTGATTTATTAAATTT
1 AATCATGTTTCACCACTTGATTTATTAAATTT
*
93245931 AGTCAT
1 AATCAT
93245937 CAACAAGGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.46
Consensus pattern (32 bp):
AATCATGTTTCACCACTTGATTTATTAAATTT
Found at i:93246858 original size:25 final size:25
Alignment explanation
Indices: 93246829--93246879 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
93246819 TACAAATTTA
**
93246829 TGTTTTTAAGTTGCGTCTTTTAATT
1 TGTTTTTAAGTCACGTCTTTTAATT
* *
93246854 TGTTTTTAGGTCATGTCTTTTAATT
1 TGTTTTTAAGTCACGTCTTTTAATT
93246879 T
1 T
93246880 TCTCTTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.61
Consensus pattern (25 bp):
TGTTTTTAAGTCACGTCTTTTAATT
Found at i:93248831 original size:14 final size:15
Alignment explanation
Indices: 93248814--93248850 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
93248804 TATAACTTAA
*
93248814 AATTTTT-AATACTT
1 AATTTTTCAAGACTT
93248828 AATTTTTCAAGACTT
1 AATTTTTCAAGACTT
93248843 -ATTTTTCA
1 AATTTTTCA
93248851 GTACTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.54
Consensus pattern (15 bp):
AATTTTTCAAGACTT
Found at i:93248856 original size:14 final size:15
Alignment explanation
Indices: 93248815--93248861 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 15
93248805 ATAACTTAAA
93248815 ATTTTT-AA-TACTT
1 ATTTTTCAAGTACTT
93248828 AATTTTTCAAG-ACTT
1 -ATTTTTCAAGTACTT
93248843 ATTTTTC-AGTACTT
1 ATTTTTCAAGTACTT
93248857 -TTTTT
1 ATTTTT
93248862 TTAGTTTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 7 0.23
14 17 0.57
15 6 0.20
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.60
Consensus pattern (15 bp):
ATTTTTCAAGTACTT
Found at i:93249783 original size:50 final size:50
Alignment explanation
Indices: 93249703--93249801 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
93249693 GGATTAGTCT
* * *
93249703 ATATTATTTAAGGAGTAGGACGAATAATATATTTGTGTTTATATTTTTTC
1 ATATAATTTAAGGAGTAGGACCAATAATATATTTGGGTTTATATTTTTTC
* *
93249753 ATATAATTTAAGGTGTAGGACCAATCATATATTTGGGTTTATATTTTTT
1 ATATAATTTAAGGAGTAGGACCAATAATATATTTGGGTTTATATTTTTT
93249802 TACATAGATG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.47
Consensus pattern (50 bp):
ATATAATTTAAGGAGTAGGACCAATAATATATTTGGGTTTATATTTTTTC
Found at i:93253375 original size:30 final size:30
Alignment explanation
Indices: 93253339--93253399 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
93253329 GAGTTTTCAG
* * *
93253339 GATCCACTCAGGCTGGGCACATGCCCATGT
1 GATCCACACAGGCAGGCCACATGCCCATGT
* *
93253369 GATCCACACGGGCAGGCCACATGCTCATGT
1 GATCCACACAGGCAGGCCACATGCCCATGT
93253399 G
1 G
93253400 CCAGCCCGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (30 bp):
GATCCACACAGGCAGGCCACATGCCCATGT
Found at i:93253803 original size:12 final size:12
Alignment explanation
Indices: 93253768--93253806 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
93253758 TAAATACTTG
93253768 TTCTTGTTCTTAA
1 TTCTTGTT-TTAA
*
93253781 TTATGTGTTTTAA
1 TTCT-TGTTTTAA
93253794 TTCTTGTTTTAA
1 TTCTTGTTTTAA
93253806 T
1 T
93253807 ATTTTTAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 9 0.39
13 10 0.43
14 4 0.17
ACGTcount: A:0.18, C:0.08, G:0.10, T:0.64
Consensus pattern (12 bp):
TTCTTGTTTTAA
Found at i:93254519 original size:11 final size:11
Alignment explanation
Indices: 93254486--93254528 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
93254476 TAATTTAGCC
93254486 ATTTTTATTTT
1 ATTTTTATTTT
**
93254497 A-TTGCATTTT
1 ATTTTTATTTT
*
93254507 ATTTTTGTTTT
1 ATTTTTATTTT
93254518 ATTTTTATTTT
1 ATTTTTATTTT
93254529 TAATTACTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:93255882 original size:50 final size:52
Alignment explanation
Indices: 93255787--93255887 Score: 125
Period size: 50 Copynumber: 2.0 Consensus size: 52
93255777 AGGATAATAC
*
93255787 AATAATATAATAGTAATAATAACAATATAAAAATAGCAATGATAGTAATAAAA
1 AATAATATAATAG-AATAATAACAATATAAAAATAGCAATAATAGTAATAAAA
* * ***
93255840 AATAATATATTA-AATAATAGCAA-ATAAAAATAGTGCTAATAGTAATAA
1 AATAATATAATAGAATAATAACAATATAAAAATAGCAATAATAGTAATAA
93255888 TAGTGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
50 21 0.50
51 10 0.24
53 11 0.26
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (52 bp):
AATAATATAATAGAATAATAACAATATAAAAATAGCAATAATAGTAATAAAA
Found at i:93255891 original size:18 final size:18
Alignment explanation
Indices: 93255862--93255904 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
93255852 AATAATAGCA
* *
93255862 AATAAAAATAGTGCTAAT
1 AATAATAATAGTGATAAT
*
93255880 AGTAATAATAGTGATAAT
1 AATAATAATAGTGATAAT
93255898 AATAATA
1 AATAATA
93255905 GTATGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.30
Consensus pattern (18 bp):
AATAATAATAGTGATAAT
Found at i:93255957 original size:26 final size:24
Alignment explanation
Indices: 93255928--93255987 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 24
93255918 AGCAATAGTA
*
93255928 AAATAATGATATTAATACCTAAATAT
1 AAATAATGACA-TAATACCTAAA-AT
*
93255954 AAAT-ATAGACATAATATCTAAAAT
1 AAATAAT-GACATAATACCTAAAAT
93255978 ATAATAATGA
1 A-AATAATGA
93255988 AAATATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
24 3 0.10
25 17 0.59
26 9 0.31
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.32
Consensus pattern (24 bp):
AAATAATGACATAATACCTAAAAT
Found at i:93256571 original size:3 final size:3
Alignment explanation
Indices: 93256565--93256599 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
93256555 AAAAGAAGAT
93256565 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
93256600 GTGAGTAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:93260803 original size:30 final size:30
Alignment explanation
Indices: 93260767--93260823 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
93260757 TTAGAGAGTT
* *
93260767 ACACGGCCTGGCCACACGGGTGTGTGGAGC
1 ACACGGCCTAGCCACACGGGCGTGTGGAGC
93260797 ACACGGCCTAGCCACACGGGCGTGTGG
1 ACACGGCCTAGCCACACGGGCGTGTGG
93260824 GATCTCACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.18, C:0.32, G:0.39, T:0.12
Consensus pattern (30 bp):
ACACGGCCTAGCCACACGGGCGTGTGGAGC
Found at i:93260921 original size:199 final size:199
Alignment explanation
Indices: 93260574--93260990 Score: 726
Period size: 199 Copynumber: 2.1 Consensus size: 199
93260564 ACCTACATGA
93260574 CCTGGCCACACGGGTGTGTGGAGCACACGGCCTAGCCACACGGGCGTGTAGGATCTCACATGGGT
1 CCTGGCCACACGGGTGTGTGGAGCACACGGCCTAGCCACACGGGCGTGTAGGATCTCACATGGGT
* * *
93260639 GTGGGAGAAGCGAAGGAAAACACATACGGCCTGGCGACATGGCCATGTGACCCACACGGCTTGGA
66 GTGGGAGAAGCGAAGGAAAACACACACGACCTGGCGACATGGCCATGTGACCCACACAGCTTGGA
* * * * *
93260704 CACATGGGCGTGTCCTAGGCCGTGTGAAATCTGGAGCTAATTTTTTTTCAAAGTTAGAGAGTTAC
131 CAAACGGGCGTATCCTAGGCCGTGTGAAATCTGGAGCTAATTTTTTTTCAAAGTCAGAGAGTTAA
93260769 ACGG
196 ACGG
*
93260773 CCTGGCCACACGGGTGTGTGGAGCACACGGCCTAGCCACACGGGCGTGTGGGATCTCACATGGGT
1 CCTGGCCACACGGGTGTGTGGAGCACACGGCCTAGCCACACGGGCGTGTAGGATCTCACATGGGT
*
93260838 GTGGGAGAAGCGAAGGAAAACACACACGACTTGGCGACATGGCCATGTGACCCACACAGCTTGGA
66 GTGGGAGAAGCGAAGGAAAACACACACGACCTGGCGACATGGCCATGTGACCCACACAGCTTGGA
93260903 CAAACGGGCGTATCCTAGGCCGTGTGAAATCTGGAGCTAATTTTTTTTCAAAGTCAGAGAGTTAA
131 CAAACGGGCGTATCCTAGGCCGTGTGAAATCTGGAGCTAATTTTTTTTCAAAGTCAGAGAGTTAA
*
93260968 ATGG
196 ACGG
*
93260972 CCTGGCCACACGGGCGTGT
1 CCTGGCCACACGGGTGTGT
93260991 AGGATCTCAC
Statistics
Matches: 206, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
199 206 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (199 bp):
CCTGGCCACACGGGTGTGTGGAGCACACGGCCTAGCCACACGGGCGTGTAGGATCTCACATGGGT
GTGGGAGAAGCGAAGGAAAACACACACGACCTGGCGACATGGCCATGTGACCCACACAGCTTGGA
CAAACGGGCGTATCCTAGGCCGTGTGAAATCTGGAGCTAATTTTTTTTCAAAGTCAGAGAGTTAA
ACGG
Found at i:93261207 original size:9 final size:9
Alignment explanation
Indices: 93261195--93261236 Score: 59
Period size: 9 Copynumber: 4.6 Consensus size: 9
93261185 ATTCTTATAC
93261195 TTATATTTT
1 TTATATTTT
93261204 TTATATTTT
1 TTATATTTT
93261213 TTATATATTT
1 TTATAT-TTT
93261223 TT-TAATTTT
1 TTAT-ATTTT
93261232 TTATA
1 TTATA
93261237 AGCTTTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 22 0.73
10 8 0.27
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (9 bp):
TTATATTTT
Found at i:93261221 original size:20 final size:19
Alignment explanation
Indices: 93261196--93261236 Score: 73
Period size: 20 Copynumber: 2.1 Consensus size: 19
93261186 TTCTTATACT
93261196 TATATTTTTTATATTTTTTA
1 TATATTTTTTA-ATTTTTTA
93261216 TATATTTTTTAATTTTTTA
1 TATATTTTTTAATTTTTTA
93261235 TA
1 TA
93261237 AGCTTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
TATATTTTTTAATTTTTTA
Found at i:93261371 original size:11 final size:11
Alignment explanation
Indices: 93261349--93261378 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
93261339 ATCAATGAGT
93261349 TTATTATTATTA
1 TTATT-TTATTA
93261361 TTATTTTATTA
1 TTATTTTATTA
93261372 TTATTTT
1 TTATTTT
93261379 TTTAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:93261371 original size:14 final size:14
Alignment explanation
Indices: 93261352--93261382 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
93261342 AATGAGTTTA
93261352 TTATTATTATTATT
1 TTATTATTATTATT
*
93261366 TTATTATTATTTTT
1 TTATTATTATTATT
93261380 TTA
1 TTA
93261383 AATTTTGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTATTATTATT
Found at i:93262366 original size:11 final size:10
Alignment explanation
Indices: 93262348--93262377 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
93262338 TATTATTCAT
93262348 TCAAAAAAAG
1 TCAAAAAAAG
*
93262358 TTAAAAAAAG
1 TCAAAAAAAG
93262368 TCAAAAAAAG
1 TCAAAAAAAG
93262378 AAAAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.70, C:0.07, G:0.10, T:0.13
Consensus pattern (10 bp):
TCAAAAAAAG
Found at i:93262383 original size:20 final size:20
Alignment explanation
Indices: 93262348--93262386 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
93262338 TATTATTCAT
**
93262348 TCAAAAAAAGTTAAAAAAAG
1 TCAAAAAAAGAAAAAAAAAG
93262368 TCAAAAAAAGAAAAAAAAA
1 TCAAAAAAAGAAAAAAAAA
93262387 ACATATATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.05, G:0.08, T:0.10
Consensus pattern (20 bp):
TCAAAAAAAGAAAAAAAAAG
Found at i:93269006 original size:26 final size:27
Alignment explanation
Indices: 93268977--93269035 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
93268967 CAAACTCAAT
* *
93268977 AAAAATAAAATAATAATTAAAAAT-TA
1 AAAAATAAAATAAAAACTAAAAATGTA
**
93269003 AAAAATTTAATAAAAACTAAAAATGTA
1 AAAAATAAAATAAAAACTAAAAATGTA
93269030 ATAAAA
1 A-AAAA
93269036 ATTAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 20 0.74
27 3 0.11
28 4 0.15
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAAATAAAATAAAAACTAAAAATGTA
Found at i:93269015 original size:37 final size:37
Alignment explanation
Indices: 93268974--93269044 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
93268964 ACCCAAACTC
93268974 AATAAAAA-T-AAAATAATAATTAAAAATTAAAAAATTT
1 AATAAAAACTAAAAAT-ATAA-TAAAAATTAAAAAATTT
*
93269011 AATAAAAACTAAAAATGTAATAAAAATTAAAAAA
1 AATAAAAACTAAAAATATAATAAAAATTAAAAAA
93269045 ACATTAAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 22 0.71
38 4 0.13
39 5 0.16
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (37 bp):
AATAAAAACTAAAAATATAATAAAAATTAAAAAATTT
Found at i:93269017 original size:18 final size:19
Alignment explanation
Indices: 93268974--93269044 Score: 78
Period size: 18 Copynumber: 3.8 Consensus size: 19
93268964 ACCCAAACTC
93268974 AATAAAAA-TAAAATAA--T
1 AATAAAAATTAAAA-AATGT
*
93268991 AATTAAAAATTAAAAAATTT
1 AA-TAAAAATTAAAAAATGT
*
93269011 AATAAAAACT-AAAAATGT
1 AATAAAAATTAAAAAATGT
93269029 AATAAAAATTAAAAAA
1 AATAAAAATTAAAAAA
93269045 ACATTAAACC
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
17 2 0.04
18 24 0.52
19 17 0.37
20 3 0.07
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (19 bp):
AATAAAAATTAAAAAATGT
Found at i:93289715 original size:18 final size:18
Alignment explanation
Indices: 93289692--93289728 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
93289682 ATTGGTTGAC
93289692 TAAATTGTAAAAGTTCAA
1 TAAATTGTAAAAGTTCAA
93289710 TAAATTGTAAAAGTTCAA
1 TAAATTGTAAAAGTTCAA
93289728 T
1 T
93289729 TGATATTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (18 bp):
TAAATTGTAAAAGTTCAA
Found at i:93294019 original size:43 final size:43
Alignment explanation
Indices: 93293966--93294115 Score: 237
Period size: 43 Copynumber: 3.5 Consensus size: 43
93293956 GCTGGTATTA
*
93293966 TATTCGGGCCTTCGTGCCTAATAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAACAGGCTTAGTGCCGGTGATGTG
* *
93294009 TATTTGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAACAGGCTTAGTGCCGGTGATGTG
* * * *
93294052 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAACAGGCTTAGTGCCGGTGATGTG
93294095 TATTCGGGCCTTCGTGCCTAA
1 TATTCGGGCCTTCGTGCCTAA
93294116 GTTATCAAAT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.12, C:0.22, G:0.33, T:0.33
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAACAGGCTTAGTGCCGGTGATGTG
Found at i:93294089 original size:86 final size:84
Alignment explanation
Indices: 93293945--93294114 Score: 241
Period size: 86 Copynumber: 2.0 Consensus size: 84
93293935 GATAAATCCT
* *
93293945 GCAGGCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAATAGGCTTAGTGCCGGTGATGTGT
1 GCAGGCCTAGTGCCGGTATTATATTCGGGCCTTCGTGCCTAACAGGCTTAGTGCCGGTGATGTGT
*
93294010 ATTTGGGCCTTCGTGCCTA
66 ATTCGGGCCTTCGTGCCTA
* * * * * *
93294029 GCAGGCTTAGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGT
1 GCAGGCCTAGTGCCGGT-AT-TATATTCGGGCCTTCGTGCCTAACAGGCTTAGTGCCGGTGATGT
93294094 GTATTCGGGCCTTCGTGCCTA
64 GTATTCGGGCCTTCGTGCCTA
93294115 AGTTATCAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
84 15 0.20
85 2 0.03
86 58 0.77
ACGTcount: A:0.12, C:0.22, G:0.33, T:0.33
Consensus pattern (84 bp):
GCAGGCCTAGTGCCGGTATTATATTCGGGCCTTCGTGCCTAACAGGCTTAGTGCCGGTGATGTGT
ATTCGGGCCTTCGTGCCTA
Found at i:93296543 original size:38 final size:38
Alignment explanation
Indices: 93296501--93296577 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
93296491 CATTTGTTTC
93296501 ATGTGAAACTAGACATAATAAGCTTCAATTTGATATGT
1 ATGTGAAACTAGACATAATAAGCTTCAATTTGATATGT
93296539 ATGTGAAACTAGACATAATAAGCTTCAATTTGATATGT
1 ATGTGAAACTAGACATAATAAGCTTCAATTTGATATGT
93296577 A
1 A
93296578 GTCCATCACC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (38 bp):
ATGTGAAACTAGACATAATAAGCTTCAATTTGATATGT
Found at i:93297363 original size:46 final size:46
Alignment explanation
Indices: 93297296--93297470 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
93297286 TGTAACTCGC
* *
93297296 CCATAAGCGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
93297342 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
93297392 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
93297435 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
93297471 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:93297462 original size:93 final size:93
Alignment explanation
Indices: 93297303--93297474 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
93297293 CGCCCATAAG
* * *
93297303 CGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93297368 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
93297396 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93297461 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
93297475 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:93304973 original size:93 final size:93
Alignment explanation
Indices: 93304846--93305015 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
93304836 CCCATAAGCA
* * *
93304846 AACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
93304911 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
93304939 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
93305004 GAGTTCGGATGC
66 GAGTTCGGATGC
93305016 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:93305012 original size:46 final size:46
Alignment explanation
Indices: 93304837--93305012 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
93304827 TGTAACCCGC
* * * * *
93304837 CCATAAGCAAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
93304883 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
93304933 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
93304976 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
93305013 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:93305031 original size:46 final size:44
Alignment explanation
Indices: 93304888--93305031 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
93304878 CGCATCCATA
93304888 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
93304935 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
93304981 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
93305027 AGTGA
1 AGTGA
93305032 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Done.