Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 285 of 344
Found at i:95587754 original size:28 final size:28
Alignment explanation
Indices: 95587704--95587758 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
95587694 TATCAACTCC
95587704 ATAAGTTATAAAACTCTTCCTATACCCA
1 ATAAGTTATAAAACTCTTCCTATACCCA
* * * *
95587732 ATAAGTTATGAGACTTTTTCTATACCC
1 ATAAGTTATAAAACTCTTCCTATACCC
95587759 CATTAATATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.07, T:0.36
Consensus pattern (28 bp):
ATAAGTTATAAAACTCTTCCTATACCCA
Found at i:95588101 original size:23 final size:23
Alignment explanation
Indices: 95588069--95588139 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
95588059 TCGTTGATTC
95588069 AATTAATTTAATAAATTTATTTA
1 AATTAATTTAATAAATTTATTTA
* *
95588092 ATTTAATTTAATAAA-TAATTTA
1 AATTAATTTAATAAATTTATTTA
** *
95588114 AATTAATAAAAATAAATATATTTA
1 AATTAAT-TTAATAAATTTATTTA
95588138 AA
1 AA
95588140 AAATCTAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
22 12 0.31
23 20 0.51
24 7 0.18
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AATTAATTTAATAAATTTATTTA
Found at i:95588112 original size:17 final size:17
Alignment explanation
Indices: 95588090--95588123 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
95588080 TAAATTTATT
*
95588090 TAATTTAATTTAATAAA
1 TAATTTAAATTAATAAA
95588107 TAATTTAAATTAATAAA
1 TAATTTAAATTAATAAA
95588124 AATAAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTTAAATTAATAAA
Found at i:95593903 original size:25 final size:26
Alignment explanation
Indices: 95593871--95593925 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
95593861 TTATTAAATT
*
95593871 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
95593896 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
95593921 A-ATAT
1 ATATAT
95593926 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:95594112 original size:44 final size:45
Alignment explanation
Indices: 95594063--95594157 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
95594053 TTACACCTCT
* *
95594063 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
95594107 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
95594152 ATTACA
1 ATTACA
95594158 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:95594157 original size:16 final size:16
Alignment explanation
Indices: 95594138--95594189 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
95594128 GATTTGCTAT
* *
95594138 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
95594154 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
95594170 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
95594186 TACA
1 TACA
95594190 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:95594296 original size:27 final size:27
Alignment explanation
Indices: 95594243--95594298 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
95594233 TTATCTTTTT
* * *
95594243 AATTTCTTTTATTTTTTTCTTTTATAA
1 AATTACTTTTATTTTTTTCTCTAATAA
95594270 AATTACTTTTAGTTTTTTTC-CTAATAA
1 AATTACTTTTA-TTTTTTTCTCTAATAA
95594297 AA
1 AA
95594299 AGAAAAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.61
Consensus pattern (27 bp):
AATTACTTTTATTTTTTTCTCTAATAA
Found at i:95594299 original size:28 final size:27
Alignment explanation
Indices: 95594243--95594299 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 27
95594233 TTATCTTTTT
* **
95594243 AATTTCTTTTATTTTTTTCTTTTATAA
1 AATTACTTTTATTTTTTTCTAATATAA
95594270 AATTACTTTTAGTTTTTTTCCTAATA-AA
1 AATTACTTTTA-TTTTTTT-CTAATATAA
95594298 AA
1 AA
95594300 GAAAAACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 10 0.40
28 11 0.44
29 4 0.16
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.60
Consensus pattern (27 bp):
AATTACTTTTATTTTTTTCTAATATAA
Found at i:95601787 original size:15 final size:15
Alignment explanation
Indices: 95601762--95601800 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
95601752 TAAATTATTT
*
95601762 TTTACTTAAAAATATA
1 TTTA-TTAAAAATAAA
*
95601778 TTTATTAAAATTAAA
1 TTTATTAAAAATAAA
95601793 TTTATTAA
1 TTTATTAA
95601801 TAAAGGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTATTAAAAATAAA
Found at i:95622671 original size:44 final size:44
Alignment explanation
Indices: 95622623--95622788 Score: 136
Period size: 51 Copynumber: 3.6 Consensus size: 44
95622613 TAAAACCACA
* *
95622623 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATGCG
1 AATCTTATCTCCCTAAAGTTGTAGTGAAGTAGATTGAAGATGCG
* * * * * *
95622667 AATCTTTTTTCCCTAAAGTTATAGTGGAA-TAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGT-GAAGTAGATT---G----AAGATGCG
* * *
95622718 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCG
1 AATCTTATCTCCCTAAAGTTGTAGTGAAGTAGATTGAAGAT-GCG
*
95622763 AATCTTATTTCCCTAAAGTTGTAGTG
1 AATCTTATCTCCCTAAAGTTGTAGTG
95622789 GGACAGATTA
Statistics
Matches: 93, Mismatches: 19, Indels: 19
0.71 0.15 0.15
Matches are distributed among these distances:
44 30 0.32
45 28 0.30
47 1 0.01
48 1 0.01
50 2 0.02
51 31 0.33
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGTAGTGAAGTAGATTGAAGATGCG
Found at i:95622743 original size:51 final size:51
Alignment explanation
Indices: 95622667--95622944 Score: 240
Period size: 51 Copynumber: 5.7 Consensus size: 51
95622657 TGAAGATGCG
* * * *
95622667 AATCTTTTTTCCCTAAAGTTATAGTGGAATAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * *
95622718 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG--A-TAG---CG
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* *
95622763 AATCTTATTTCCCTAAAGTTGTAGTGGGACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * * * *
95622814 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAG--A-TAG---CG
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * *
95622859 AATCTTATTTTCCTAAAGTTATAGTAGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
*
95622910 AATCTTATCTTCCTAAAGTTGTAGT-GAAGCAGATT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAA-CAGATT
95622945 GAAGATGCGA
Statistics
Matches: 174, Mismatches: 40, Indels: 26
0.73 0.17 0.11
Matches are distributed among these distances:
45 65 0.37
47 2 0.01
48 8 0.05
49 2 0.01
50 3 0.02
51 94 0.54
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (51 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
Found at i:95622902 original size:192 final size:190
Alignment explanation
Indices: 95622620--95623011 Score: 579
Period size: 191 Copynumber: 2.1 Consensus size: 190
95622610 GATTAAAACC
* *
95622620 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATGCGAATCTTTTTTCCCTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGATGCGAATCTTTTTTCCCTAAAG
* * * *
95622685 TTATAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAG
66 TTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGCAG
* * * * *
95622750 ATTGAAGATAGCGAATCTTATTTCCCTAAAGTTGTAGTGGGACAGATTAAAGCTACAAGTT
131 ATTGAAGAT-GCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
* *
95622811 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATTTT-CCTAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAT-GCGAATCTT-TTTTCCCTAA
*
95622875 AGTTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTTCCTAAAGTTGTAGTGAAGC
64 AGTTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGC
* * * *
95622940 AGATTGAAGATGCGAATATTATTTGCTTGAAGTTGGAGTGGAATAGACTAAAGCTACAAGCT
129 AGATTGAAGATGCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
*
95623002 ATAAATCTTA
1 ACAAATCTTA
95623012 CCTCTCTAAA
Statistics
Matches: 180, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
191 91 0.51
192 85 0.47
193 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (190 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGATGCGAATCTTTTTTCCCTAAAG
TTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGCAG
ATTGAAGATGCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
Found at i:95623039 original size:95 final size:96
Alignment explanation
Indices: 95622620--95623042 Score: 553
Period size: 96 Copynumber: 4.4 Consensus size: 96
95622610 GATTAAAACC
* * *
95622620 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGAT-GCGAATCTTTTTTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
*
95622684 GTTATAGTGGAATAGATTAAAGCTACAAGTT
66 GTTATAGTGGAACAGATTAAAGCTACAAGTT
*
95622715 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
* *
95622780 GTTGTAGTGGGACAGATTAAAGCTACAAGTT
66 GTTATAGTGGAACAGATTAAAGCTACAAGTT
* * *
95622811 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATTTTCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
*
95622876 GTTATAGTAGAACAGATTAAAGCTACAAGTT
66 GTTATAGTGGAACAGATTAAAGCTACAAGTT
* * * * * * * *
95622907 ACAAATCTTATCTTCCTAAAGTTGTAGTGAAGCAGATTGAAGAT-GCGAATATTATTTGCTTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
** * * *
95622971 GTTGGAGTGGAATAGACTAAAGCTACAAGCT
66 GTTATAGTGGAACAGATTAAAGCTACAAGTT
* * * * * * *
95623002 ATAAATCTTACCTCTCTAAAGTTACAGCGGAGTAGATTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
95623043 ACTACAACTC
Statistics
Matches: 288, Mismatches: 39, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
95 114 0.40
96 174 0.60
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (96 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
GTTATAGTGGAACAGATTAAAGCTACAAGTT
Found at i:95628669 original size:26 final size:24
Alignment explanation
Indices: 95628606--95628669 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 24
95628596 ATGGTTATGG
95628606 CTAAAAATTTCTTATATTTAAAATA
1 CTAAAAATTT-TTATATTTAAAATA
*
95628631 CTAAAAAAATTTATATTATTT-AAAT-
1 CT--AAAAATTTTTA-TATTTAAAATA
95628656 CTTAAAAATTTTTA
1 C-TAAAAATTTTTA
95628670 AAGTTGTGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
24 10 0.30
25 3 0.09
26 7 0.21
27 13 0.39
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (24 bp):
CTAAAAATTTTTATATTTAAAATA
Found at i:95631624 original size:17 final size:18
Alignment explanation
Indices: 95631599--95631632 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
95631589 AGTCTCTATA
95631599 TTCAAAAAAAA-AACTTG
1 TTCAAAAAAAATAACTTG
*
95631616 TTCATAAAAAATAACTT
1 TTCAAAAAAAATAACTT
95631633 TATGAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29
Consensus pattern (18 bp):
TTCAAAAAAAATAACTTG
Found at i:95631626 original size:18 final size:17
Alignment explanation
Indices: 95631599--95631632 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
95631589 AGTCTCTATA
95631599 TTCAAAAAAAAAACTTG
1 TTCAAAAAAAAAACTTG
*
95631616 TTCATAAAAAATAACTT
1 TTCA-AAAAAAAAACTT
95631633 TATGAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29
Consensus pattern (17 bp):
TTCAAAAAAAAAACTTG
Found at i:95631730 original size:16 final size:14
Alignment explanation
Indices: 95631705--95631742 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
95631695 TTATAAAACC
95631705 TTAT-TTATAAATGT
1 TTATATTATAAAT-T
95631719 TATATATTATAAATT
1 T-TATATTATAAATT
95631734 TTATATTAT
1 TTATATTAT
95631743 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 5 0.23
16 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TTATATTATAAATT
Found at i:95638220 original size:21 final size:21
Alignment explanation
Indices: 95638194--95638234 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
95638184 ATCTGCTTAA
*
95638194 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
95638215 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
95638235 TTGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:95641419 original size:21 final size:21
Alignment explanation
Indices: 95641395--95641440 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
95641385 AGACAAGTTC
95641395 TTTTA-ATTAAATTAAATTAAA
1 TTTTATATT-AATTAAATTAAA
*
95641416 TTTTATATTAATTGAATTAAA
1 TTTTATATTAATTAAATTAAA
95641437 TTTT
1 TTTT
95641441 TGAGTGGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TTTTATATTAATTAAATTAAA
Found at i:95644470 original size:21 final size:21
Alignment explanation
Indices: 95644444--95644487 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
95644434 ATATTTTACA
95644444 AATTTG-TTGATATTTTGTATT
1 AATTTGATTGATATTTT-TATT
*
95644465 AATTTGATTTTATATTTTTATT
1 AATTTGA-TTGATATTTTTATT
95644487 A
1 A
95644488 GCTCTGGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (21 bp):
AATTTGATTGATATTTTTATT
Found at i:95645183 original size:9 final size:9
Alignment explanation
Indices: 95645167--95645209 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
95645157 GGTATTTTTC
95645167 GGTAATTCG
1 GGTAATTCG
*
95645176 GTTAATTCG
1 GGTAATTCG
*
95645185 GTTAATTCG
1 GGTAATTCG
95645194 GGTAATTCG
1 GGTAATTCG
95645203 GGTAATT
1 GGTAATT
95645210 TTTAACCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.23, C:0.09, G:0.28, T:0.40
Consensus pattern (9 bp):
GGTAATTCG
Found at i:95650255 original size:29 final size:29
Alignment explanation
Indices: 95650197--95650268 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
95650187 TATTAAAATC
*
95650197 AATATGATTTATAT-TCCGAATAAAAACA
1 AATATGTTTTATATATCCGAATAAAAACA
*
95650225 AATATGTTTTATATATGCGAATAAAAACA
1 AATATGTTTTATATATCCGAATAAAAACA
95650254 AATATGTTTTATATA
1 AATATGTTTTATATA
95650269 CGCATATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 13 0.32
29 28 0.68
ACGTcount: A:0.47, C:0.07, G:0.08, T:0.38
Consensus pattern (29 bp):
AATATGTTTTATATATCCGAATAAAAACA
Found at i:95670737 original size:15 final size:17
Alignment explanation
Indices: 95670717--95670749 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
95670707 ACAAAAAGAC
95670717 AAAA-GGAAAA-GAAAA
1 AAAAGGGAAAATGAAAA
95670732 AAAAGGGAAAATGAAAA
1 AAAAGGGAAAATGAAAA
95670749 A
1 A
95670750 GTGACCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 6 0.38
17 6 0.38
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (17 bp):
AAAAGGGAAAATGAAAA
Found at i:95687101 original size:23 final size:23
Alignment explanation
Indices: 95687070--95687124 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
95687060 TAATGATGTG
95687070 AATAATAAAATAT-ATAAATATAA
1 AATAATAAAATATCA-AAATATAA
* *
95687093 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATA-TAA
95687117 AATAATAA
1 AATAATAA
95687125 TTAATATTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AATAATAAAATATCAAAATATAA
Found at i:95687110 original size:8 final size:7
Alignment explanation
Indices: 95687074--95687113 Score: 53
Period size: 8 Copynumber: 5.3 Consensus size: 7
95687064 GATGTGAATA
95687074 ATAAAAT
1 ATAAAAT
95687081 ATATAAAT
1 ATA-AAAT
95687089 ATAAAAT
1 ATAAAAT
95687096 ATTAAAAT
1 A-TAAAAT
95687104 ATCAAAAT
1 AT-AAAAT
95687112 AT
1 AT
95687114 TAGAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 9 0.30
8 21 0.70
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (7 bp):
ATAAAAT
Found at i:95687112 original size:16 final size:15
Alignment explanation
Indices: 95687074--95687120 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
95687064 GATGTGAATA
95687074 ATAAAATA-TATAAAT
1 ATAAAATATTA-AAAT
95687089 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
95687104 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
95687120 A
1 A
95687121 ATAATTAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 14 0.48
16 15 0.52
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:95687120 original size:8 final size:8
Alignment explanation
Indices: 95687070--95687120 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
95687060 TAATGATGTG
*
95687070 AATAATAA
1 AATATTAA
95687078 AATA-TATA
1 AATATTA-A
95687086 AATA-TAA
1 AATATTAA
95687093 AATATTAA
1 AATATTAA
*
95687101 AATATCAA
1 AATATTAA
*
95687109 AATATTAG
1 AATATTAA
95687117 AATA
1 AATA
95687121 ATAATTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
7 7 0.18
8 31 0.82
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:95687284 original size:20 final size:21
Alignment explanation
Indices: 95687233--95687288 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
95687223 ATACTACATC
95687233 AATATGTACAT-ATATAAAAA
1 AATATGTACATAATATAAAAA
* * *
95687253 AATACGT-GATAATAT-TAAA
1 AATATGTACATAATATAAAAA
95687272 AATATGTACATAATATA
1 AATATGTACATAATATA
95687289 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
AATATGTACATAATATAAAAA
Found at i:95687330 original size:22 final size:24
Alignment explanation
Indices: 95687267--95687331 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
95687257 CGTGATAATA
*
95687267 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
95687292 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
95687315 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
95687332 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:95687384 original size:35 final size:35
Alignment explanation
Indices: 95687320--95687386 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
95687310 TATAGTTAAG
*
95687320 ATATATACATAAGATAACATGTAAAATATATATAT
1 ATATATAAATAAGATAACATGTAAAATATATATAT
* *
95687355 ATATATAAATAATATAATAT-TAAAGATATATA
1 ATATATAAATAAGATAACATGTAAA-ATATATA
95687387 CATAAAATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 4 0.14
35 24 0.86
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (35 bp):
ATATATAAATAAGATAACATGTAAAATATATATAT
Found at i:95687391 original size:25 final size:25
Alignment explanation
Indices: 95687355--95687486 Score: 100
Period size: 25 Copynumber: 5.6 Consensus size: 25
95687345 ATATATATAT
*
95687355 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * * *
95687380 ATATATACATAAAATAGTATAAAAT
1 ATATATACATAATATAATATTAAAG
* *
95687405 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATATTAAAG
* *
95687429 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
*
95687451 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
95687474 AAATATA-ATAATA
1 ATATATACATAATA
95687487 ACAAAAAAGG
Statistics
Matches: 85, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 24 0.28
24 7 0.08
25 38 0.45
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:95688010 original size:30 final size:30
Alignment explanation
Indices: 95687974--95688177 Score: 320
Period size: 30 Copynumber: 6.8 Consensus size: 30
95687964 TAGGTACAAG
* * *
95687974 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
95688004 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
95688034 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
95688064 TGGTGGTGGAAAAAGAGT-GCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
95688093 TGGTGGTGGAAAAAGAGTGGCTAGTGGAAT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
95688123 TGGTGGTGGAAAATGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
95688153 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGT
95688178 TGAGAAAAGT
Statistics
Matches: 160, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
29 29 0.18
30 131 0.82
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:95688144 original size:89 final size:90
Alignment explanation
Indices: 95687974--95688177 Score: 356
Period size: 89 Copynumber: 2.3 Consensus size: 90
95687964 TAGGTACAAG
* * *
95687974 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAATTGGTG
95688039 GTGGAAAAGGTGTGGCTAGTGGAGT
66 GTGGAAAAGGTGTGGCTAGTGGAGT
*
95688064 TGGTGGTGGAAAAAGAGT-GCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAATTGGTG
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAATTGGTG
*
95688128 GTGGAAAATGTGTGGCTAGTGGAGT
66 GTGGAAAAGGTGTGGCTAGTGGAGT
95688153 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
95688178 TGAGAAAAGT
Statistics
Matches: 107, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 86 0.80
90 21 0.20
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.25
Consensus pattern (90 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAATTGGTG
GTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:95688943 original size:14 final size:14
Alignment explanation
Indices: 95688924--95688973 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
95688914 GAGTTGATTT
* *
95688924 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
95688938 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
95688953 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
95688967 TT-AAAAA
1 TTGAAAAA
95688974 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:95689082 original size:73 final size:74
Alignment explanation
Indices: 95688953--95689176 Score: 317
Period size: 74 Copynumber: 3.0 Consensus size: 74
95688943 AAAACAGAAA
* * ** *
95688953 TTGAAAAGCAGAAA-TTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTTAAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATA
*
95689017 TGAGTTAATTT
64 TGAGTTGATTT
* * *
95689028 TTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
95689092 AGTCGATTT
66 AGTTGATTT
*
95689101 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
95689166 AGTTGATTT
66 AGTTGATTT
95689175 TT
1 TT
95689177 TTTTACGAAC
Statistics
Matches: 133, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
73 51 0.38
74 57 0.43
75 25 0.19
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (74 bp):
TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTT
Found at i:95689203 original size:14 final size:14
Alignment explanation
Indices: 95689184--95689212 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
95689174 TTTTTTTACG
95689184 AACAGAAATTGAAA
1 AACAGAAATTGAAA
95689198 AACAGAAATTGAAA
1 AACAGAAATTGAAA
95689212 A
1 A
95689213 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:95689257 original size:92 final size:91
Alignment explanation
Indices: 95689101--95689267 Score: 266
Period size: 92 Copynumber: 1.8 Consensus size: 91
95689091 GAGTCGATTT
* *
95689101 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
95689166 AGTTGATTTTTTTTTACGAACAGAAA
66 AGTTGATTTTTTTTTACGAACAGAAA
*
95689192 TTGAAAAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
95689255 ATGAGTTGATTTT
63 ATGAGTTGATTTT
95689268 GACAAACAGA
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
90 14 0.20
91 14 0.20
92 40 0.57
93 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (91 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTTACGAACAGAAA
Found at i:95689325 original size:72 final size:72
Alignment explanation
Indices: 95689231--95689569 Score: 294
Period size: 72 Copynumber: 4.5 Consensus size: 72
95689221 CATGTGAGCC
95689231 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGC
95689296 GTGTCTT
66 GTGTCTT
*
95689303 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-AAAAACAGAAATTAAAAACCAGAAATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATT--------GAAATT
** ** *
95689367 GAAAATACCTCAGTGT-GT
58 --ACCT-CAGC-GTGTCTT
* * * ** * * **
95689385 GA-GC-CAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACC
1 GAGGCTCAA--CTC-----ACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAATTGAAATT
*
95689448 ACCTCAGCGTGTCCT
58 ACCTCAGCGTGTCTT
*
95689463 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAAATTGAAATTACCTCAGC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGC
95689528 --GTCTT
66 GTGTCTT
*
95689533 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
95689570 TTTTGAAACA
Statistics
Matches: 212, Mismatches: 31, Indels: 50
0.72 0.11 0.17
Matches are distributed among these distances:
70 40 0.19
71 12 0.06
72 63 0.30
73 18 0.08
77 4 0.02
78 8 0.04
79 10 0.05
80 6 0.03
81 7 0.03
82 8 0.04
83 4 0.02
87 18 0.08
88 4 0.02
89 10 0.05
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (72 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGC
GTGTCTT
Found at i:95689356 original size:13 final size:14
Alignment explanation
Indices: 95689338--95689371 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
95689328 TGAGTTGATT
95689338 TTAAAAA-CAGAAA
1 TTAAAAACCAGAAA
95689351 TTAAAAACCAGAAA
1 TTAAAAACCAGAAA
*
95689365 TTGAAAA
1 TTAAAAA
95689372 TACCTCAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.65, C:0.09, G:0.09, T:0.18
Consensus pattern (14 bp):
TTAAAAACCAGAAA
Found at i:95689399 original size:159 final size:160
Alignment explanation
Indices: 95689028--95689517 Score: 673
Period size: 164 Copynumber: 3.0 Consensus size: 160
95689018 GAGTTAATTT
* * *
95689028 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
*
95689091 GAGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGATTTTTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
95689156 TCGCAATATGAGTTGATTTTTTTTTACGAACAGAAA
130 TCGCAATATGAGTTGA-----TTTTACAAACAGAAA
* *
95689192 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
* * * *
95689257 GAGTTGA-TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCT
66 GAGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
95689321 CGCAATATGAGTTGATTTTAAAAACAGAAA
131 CGCAATATGAGTTGATTTTACAAACAGAAA
* * *
95689351 TT-AAAAACCAGAAATTGAAAATACCTCAGTGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATA
1 TTGAAAAA-CAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
* * ** * **
95689415 TGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
65 TGAGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
95689480 TCGCAATATGAGTTGATTTTGACAAACAAAAA
130 TCGCAATATGAGTTGATTTT-ACAAACAGAAA
95689512 TTGAAA
1 TTGAAA
95689518 TTACCTCAGC
Statistics
Matches: 292, Mismatches: 28, Indels: 14
0.87 0.08 0.04
Matches are distributed among these distances:
158 5 0.02
159 72 0.25
160 69 0.24
161 11 0.04
162 3 0.01
164 83 0.28
165 15 0.05
166 34 0.12
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (160 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTACAAACAGAAA
Found at i:95689486 original size:73 final size:71
Alignment explanation
Indices: 95689391--95689589 Score: 247
Period size: 72 Copynumber: 2.8 Consensus size: 71
95689381 GTGTGAGCCA
* * *
95689391 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
95689456 GTGTCCTG
66 --GTCCTG
** * * **
95689464 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
*
95689528 GTCTTG
66 GTCCTG
* **
95689534 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATG-AACATAAATTAAAA
95689590 AACGAAAATT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
70 36 0.34
71 4 0.04
72 38 0.36
73 29 0.27
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
GTCCTG
Found at i:95689553 original size:70 final size:71
Alignment explanation
Indices: 95689391--95689569 Score: 234
Period size: 70 Copynumber: 2.5 Consensus size: 71
95689381 GTGTGAGCCA
* * * ** *
95689391 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAAAAATTAAAACCACCTCAGC
95689456 GTGTCCTG
65 G-GTCCTG
* **
95689464 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAAATTGAAATTACCTCAGC-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAAATTAAAACCACCTCAGCG
*
95689528 GTCTTG
66 GTCCTG
*
95689534 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
95689570 TTTTGAAACA
Statistics
Matches: 95, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
70 40 0.42
72 26 0.27
73 29 0.31
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAAATTAAAACCACCTCAGCG
GTCCTG
Found at i:95689697 original size:72 final size:72
Alignment explanation
Indices: 95689581--95689721 Score: 237
Period size: 72 Copynumber: 2.0 Consensus size: 72
95689571 TTTGAAACAT
* * *
95689581 AAATTAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
95689646 TGAGTTG
66 TGAGTTG
* *
95689653 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATA
1 AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
95689718 TGAG
66 TGAG
95689722 CTGATTTTGA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (72 bp):
AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTG
Found at i:95689964 original size:77 final size:75
Alignment explanation
Indices: 95689875--95690211 Score: 425
Period size: 72 Copynumber: 4.5 Consensus size: 75
95689865 AGTGTGTAAT
* * * * * * *
95689875 CTGAAGCTCAACTCACCTATCGTAATATTAGTTGATTTTTTTTTAAAACAGAAACTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
*
95689940 TCAGCATGTGAAC
66 TCAGC--GTG-TC
*
95689953 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
*
95690017 TCAACGTGTC
66 TCAGCGTGTC
* * * *
95690027 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
95690089 TCAGCGTGTC
66 TCAGCGTGTC
* * *
95690099 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTT-AACAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTGAA-AACAGAAATTGAAAATAC
95690162 CTCAGCGTGTC
65 CTCAGCGTGTC
* *
95690173 CTGAGGCTCAACTCATCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTT
95690212 GAAAAACAAA
Statistics
Matches: 235, Mismatches: 19, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
72 67 0.29
73 2 0.01
74 67 0.29
75 37 0.16
77 61 0.26
78 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (75 bp):
CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
TCAGCGTGTC
Found at i:95690176 original size:74 final size:73
Alignment explanation
Indices: 95689875--95690211 Score: 417
Period size: 74 Copynumber: 4.5 Consensus size: 73
95689865 AGTGTGTAAT
* * * * * *
95689875 CTGAAGCTCAACTCACCTATCGTAATATTAGTTGATTTTTTTTTAAAACAGAAACTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGA--TTTTTTTAAAACAGAAATTGAAAATACC
*
95689940 TCAGCATGTGAAC
64 TCAGC--GTG-TC
*
95689953 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGA-TTTTTTT-AAAACAGAAATTGAAAATACC
*
95690017 TCAACGTGTC
64 TCAGCGTGTC
* * * * *
95690027 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTAAAACAGAAATTGAAAATACCTC
95690091 AGCGTGTC
66 AGCGTGTC
* * *
95690099 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTAA-AACAGAAATTGAAAATACCT
95690164 CAGCGTGTC
65 CAGCGTGTC
* *
95690173 CTGAGGCTCAACTCATCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTT
95690212 GAAAAACAAA
Statistics
Matches: 235, Mismatches: 20, Indels: 12
0.88 0.07 0.04
Matches are distributed among these distances:
72 62 0.26
73 10 0.04
74 67 0.29
75 34 0.14
76 8 0.03
77 53 0.23
78 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (73 bp):
CTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTAAAACAGAAATTGAAAATACCTC
AGCGTGTC
Found at i:95690178 original size:146 final size:147
Alignment explanation
Indices: 95689914--95690229 Score: 426
Period size: 146 Copynumber: 2.1 Consensus size: 147
95689904 AGTTGATTTT
* *
95689914 TTTTTAAAACAGAAACTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATA
* *
95689979 TAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT
65 TAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATC
*
95690044 TCTCGCAATATAAGTTGAA
130 TCTAGCAATATAAGTTG-A
* * **
95690063 TTTTGAAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
* * *
95690126 TGAGTTGA-TTTTTTT-AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAT
65 TAAGTTGATTTTTTTTGAA-AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCAT
*
95690189 CTCTAGCAATATGAGTTGA
129 CTCTAGCAATATAAGTTGA
*
95690208 TTTTGAAAAACAAAAATT-AAAA
1 TTTTG-AAAACAGAAATTGAAAA
95690230 GGCTTAACTC
Statistics
Matches: 149, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
145 11 0.07
146 77 0.52
147 33 0.22
149 28 0.19
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (147 bp):
TTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
AAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATCT
CTAGCAATATAAGTTGA
Found at i:95690379 original size:70 final size:70
Alignment explanation
Indices: 95690235--95690474 Score: 279
Period size: 71 Copynumber: 3.4 Consensus size: 70
95690225 TAAAAGGCTT
* * * ** * **
95690235 AACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCGGCGTGCCCCG
1 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAA-ATAAATTAAAAATACCTCAACGTGACTTG
*
95690298 AGGCTC
65 AGGTTC
* * *
95690304 AACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAATTAAAAATACCTCAACGTGTCTTGA
1 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAAATAAATTAAAAATACCTCAACGTGACTTGA
95690369 GGTTC
66 GGTTC
** * *
95690374 AACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATGATAAATTGAAAATACCTCAATGTGACTT
1 AACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAAATAAATTAAAAATACCTCAACGTGACTT
95690438 GAGGTTC
64 GAGGTTC
*
95690445 AACTCACCTCTCACAATATGAGTTGATTTT
1 AACTCACCTCTCGCAATATGAGTTGATTTT
95690475 TTGAATTAAA
Statistics
Matches: 148, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
69 25 0.17
70 57 0.39
71 61 0.41
72 5 0.03
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (70 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTGAAAAATAAATTAAAAATACCTCAACGTGACTTGA
GGTTC
Found at i:95690791 original size:76 final size:72
Alignment explanation
Indices: 95690635--95690891 Score: 349
Period size: 76 Copynumber: 3.5 Consensus size: 72
95690625 TGGCCCGAGA
*
95690635 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAAAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAA--AAAAATTGAAAATACCTCAGCG
**
95690700 TGTCCCGAGG
63 TGTCTTGAGG
* *
95690710 CTCAACTCACCTCTCACAATATGAGTTGATTTTTTGATAAAAATAGAATTTGAAAATATCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAAAA-A-AA-TTGAAAATACCTCAGC
95690775 GTGTCTTGAGG
62 GTGTCTTGAGG
*
95690786 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTCAGC--
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAA-AAAAATTGAAAATACCTCAGCGT
95690848 GTCTTGAGG
64 GTCTTGAGG
*
95690857 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
95690892 TTTGAAACAT
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
71 37 0.22
72 5 0.03
73 16 0.10
74 8 0.05
75 46 0.28
76 54 0.33
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (72 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAAATTGAAAATACCTCAGCGTGT
CTTGAGG
Found at i:95690936 original size:161 final size:161
Alignment explanation
Indices: 95690759--95691051 Score: 446
Period size: 161 Copynumber: 1.8 Consensus size: 161
95690749 AAAATAGAAT
* * ** *
95690759 TTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAA
* ** * *
95690824 A-ACAAAAATTGAAATTACCTCAGCGT-CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
64 ACACAAAAATTGAAAATACCTCAGCGTCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
95690887 TTTTTTTTGAAACATAAATTAAAAAAATGAAAA
129 TTTTTTTTGAAACATAAATTAAAAAAATGAAAA
95690920 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
*
95690985 ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATT
66 ACAAAAATTGAAAATACCTCAGCGT-CCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
95691050 TT
130 TT
95691052 GAAAAAGTAG
Statistics
Matches: 118, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
159 3 0.03
160 26 0.22
161 54 0.46
162 35 0.30
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (161 bp):
TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
ACAAAAATTGAAAATACCTCAGCGTCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTTTGAAACATAAATTAAAAAAATGAAAA
Found at i:95691299 original size:77 final size:75
Alignment explanation
Indices: 95691197--95691532 Score: 402
Period size: 77 Copynumber: 4.5 Consensus size: 75
95691187 AGTGTGTAAT
* **
95691197 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
*
95691262 TCAGCATGTGAAC
66 TCAGC--GTG-TC
* *
95691275 C-AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTGAAAACAGAAATTGAAAATA
*
95691339 CCTCAACGTGTC
64 CCTCAGCGTGTC
* ** * * *
95691351 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
95691413 TCAGCGTGTC
66 TCAGCGTGTC
* * *
95691423 CTGAGGCTCAAATCA--T-T--TAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAACAGAAATTGAAAATAC
95691483 CTCAGCGTGTC
65 CTCAGCGTGTC
*
95691494 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
95691533 GAAAAACAAA
Statistics
Matches: 225, Mismatches: 21, Indels: 27
0.82 0.08 0.10
Matches are distributed among these distances:
67 11 0.05
69 1 0.00
70 1 0.00
71 50 0.22
72 47 0.21
73 1 0.00
74 1 0.00
75 4 0.02
76 13 0.06
77 63 0.28
78 1 0.00
79 32 0.14
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (75 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
TCAGCGTGTC
Found at i:95691697 original size:70 final size:70
Alignment explanation
Indices: 95691550--95691724 Score: 212
Period size: 70 Copynumber: 2.5 Consensus size: 70
95691540 AAAAATTAAA
* * * * * **
95691550 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
95691614 CCCCG
66 CCCCG
*
95691619 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA-AAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
95691683 GTCTTG
65 GCCCCG
95691689 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
95691725 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
69 27 0.29
70 61 0.66
71 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:95728083 original size:44 final size:44
Alignment explanation
Indices: 95728035--95728200 Score: 136
Period size: 51 Copynumber: 3.6 Consensus size: 44
95728025 TAAAACCACA
* *
95728035 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATGCG
1 AATCTTATCTCCCTAAAGTTGTAGTGAAGTAGATTGAAGATGCG
* * * * * *
95728079 AATCTTTTTTCCCTAAAGTTATAGTGGAA-TAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGT-GAAGTAGATT---G----AAGATGCG
* * *
95728130 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCG
1 AATCTTATCTCCCTAAAGTTGTAGTGAAGTAGATTGAAGAT-GCG
*
95728175 AATCTTATTTCCCTAAAGTTGTAGTG
1 AATCTTATCTCCCTAAAGTTGTAGTG
95728201 GGACAGATTA
Statistics
Matches: 93, Mismatches: 19, Indels: 19
0.71 0.15 0.15
Matches are distributed among these distances:
44 30 0.32
45 28 0.30
47 1 0.01
48 1 0.01
50 2 0.02
51 31 0.33
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGTAGTGAAGTAGATTGAAGATGCG
Found at i:95728155 original size:51 final size:51
Alignment explanation
Indices: 95728079--95728356 Score: 240
Period size: 51 Copynumber: 5.7 Consensus size: 51
95728069 TGAAGATGCG
* * * *
95728079 AATCTTTTTTCCCTAAAGTTATAGTGGAATAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * *
95728130 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG--A-TAG---CG
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* *
95728175 AATCTTATTTCCCTAAAGTTGTAGTGGGACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * * * *
95728226 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAG--A-TAG---CG
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * *
95728271 AATCTTATTTTCCTAAAGTTATAGTAGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
*
95728322 AATCTTATCTTCCTAAAGTTGTAGT-GAAGCAGATT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAA-CAGATT
95728357 GAAGATGCGA
Statistics
Matches: 174, Mismatches: 40, Indels: 26
0.73 0.17 0.11
Matches are distributed among these distances:
45 65 0.37
47 2 0.01
48 8 0.05
49 2 0.01
50 3 0.02
51 94 0.54
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (51 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
Found at i:95728314 original size:192 final size:190
Alignment explanation
Indices: 95728032--95728423 Score: 579
Period size: 191 Copynumber: 2.1 Consensus size: 190
95728022 GATTAAAACC
* *
95728032 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATGCGAATCTTTTTTCCCTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGATGCGAATCTTTTTTCCCTAAAG
* * * *
95728097 TTATAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAG
66 TTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGCAG
* * * * *
95728162 ATTGAAGATAGCGAATCTTATTTCCCTAAAGTTGTAGTGGGACAGATTAAAGCTACAAGTT
131 ATTGAAGAT-GCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
* *
95728223 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATTTT-CCTAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAT-GCGAATCTT-TTTTCCCTAA
*
95728287 AGTTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTTCCTAAAGTTGTAGTGAAGC
64 AGTTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGC
* * * *
95728352 AGATTGAAGATGCGAATATTATTTGCTTGAAGTTGGAGTGGAATAGACTAAAGCTACAAGCT
129 AGATTGAAGATGCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
*
95728414 ATAAATCTTA
1 ACAAATCTTA
95728424 CCTCTCTAAA
Statistics
Matches: 180, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
191 91 0.51
192 85 0.47
193 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (190 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGATGCGAATCTTTTTTCCCTAAAG
TTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGCAG
ATTGAAGATGCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
Found at i:95728451 original size:95 final size:96
Alignment explanation
Indices: 95728032--95728454 Score: 553
Period size: 96 Copynumber: 4.4 Consensus size: 96
95728022 GATTAAAACC
* * *
95728032 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGAT-GCGAATCTTTTTTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
*
95728096 GTTATAGTGGAATAGATTAAAGCTACAAGTT
66 GTTATAGTGGAACAGATTAAAGCTACAAGTT
*
95728127 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
* *
95728192 GTTGTAGTGGGACAGATTAAAGCTACAAGTT
66 GTTATAGTGGAACAGATTAAAGCTACAAGTT
* * *
95728223 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATTTTCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
*
95728288 GTTATAGTAGAACAGATTAAAGCTACAAGTT
66 GTTATAGTGGAACAGATTAAAGCTACAAGTT
* * * * * * * *
95728319 ACAAATCTTATCTTCCTAAAGTTGTAGTGAAGCAGATTGAAGAT-GCGAATATTATTTGCTTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
** * * *
95728383 GTTGGAGTGGAATAGACTAAAGCTACAAGCT
66 GTTATAGTGGAACAGATTAAAGCTACAAGTT
* * * * * * *
95728414 ATAAATCTTACCTCTCTAAAGTTACAGCGGAGTAGATTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
95728455 ACTACAACTC
Statistics
Matches: 288, Mismatches: 39, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
95 114 0.40
96 174 0.60
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (96 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
GTTATAGTGGAACAGATTAAAGCTACAAGTT
Found at i:95734103 original size:26 final size:24
Alignment explanation
Indices: 95734040--95734103 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 24
95734030 ATGGTTATGG
95734040 CTAAAAATTTCTTATATTTAAAATA
1 CTAAAAATTT-TTATATTTAAAATA
*
95734065 CTAAAAAAATTTATATTATTT-AAAT-
1 CT--AAAAATTTTTA-TATTTAAAATA
95734090 CTTAAAAATTTTTA
1 C-TAAAAATTTTTA
95734104 AAGTTGTGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
24 10 0.30
25 3 0.09
26 7 0.21
27 13 0.39
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (24 bp):
CTAAAAATTTTTATATTTAAAATA
Found at i:95736983 original size:18 final size:18
Alignment explanation
Indices: 95736957--95736991 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95736947 AGTCTCTATA
95736957 TTCAAAAAAAAAAACTTG
1 TTCAAAAAAAAAAACTTG
* *
95736975 TTCATAAAAAATAACTT
1 TTCAAAAAAAAAAACTT
95736992 TATGAATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (18 bp):
TTCAAAAAAAAAAACTTG
Found at i:95739252 original size:18 final size:17
Alignment explanation
Indices: 95739213--95739255 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
95739203 TGAAAAATGG
*
95739213 ATATTTTTTTTGTTCAA
1 ATATTTTTTTTGTGCAA
95739230 ATATTTTTTTT-TGCAA
1 ATATTTTTTTTGTGCAA
95739246 A-ATTATTTTT
1 ATATT-TTTTT
95739256 CGAAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 3 0.12
16 10 0.42
17 11 0.46
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.65
Consensus pattern (17 bp):
ATATTTTTTTTGTGCAA
Found at i:95741474 original size:16 final size:16
Alignment explanation
Indices: 95741455--95741485 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95741445 ATAAAAAATA
95741455 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
*
95741471 ATATAACATTTATAA
1 ATATAAAATTTATAA
95741486 ATAAGGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:95764213 original size:12 final size:12
Alignment explanation
Indices: 95764193--95764228 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
95764183 TGGGATATGC
*
95764193 AATGTATGAATG
1 AATGCATGAATG
95764205 AATGCATGAATG
1 AATGCATGAATG
95764217 AATGCATGAATG
1 AATGCATGAATG
95764229 TCAAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:95765820 original size:16 final size:15
Alignment explanation
Indices: 95765799--95765846 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
95765789 GATGTGAATA
95765799 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
95765815 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
95765830 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
95765846 A
1 A
95765847 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:95765822 original size:24 final size:24
Alignment explanation
Indices: 95765795--95765850 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
95765785 TAATGATGTG
*
95765795 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
95765819 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
95765843 AATAATAA
1 AATAATAA
95765851 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:95765829 original size:8 final size:8
Alignment explanation
Indices: 95765795--95765846 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
95765785 TAATGATGTG
*
95765795 AATAATAA
1 AATATTAA
95765803 AATATATAA
1 AATAT-TAA
95765812 AATA-TAA
1 AATATTAA
95765819 AATATTAA
1 AATATTAA
*
95765827 AATATCAA
1 AATATTAA
*
95765835 AATATTAG
1 AATATTAA
95765843 AATA
1 AATA
95765847 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:95766014 original size:20 final size:20
Alignment explanation
Indices: 95765962--95766018 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
95765952 ATACTACATC
*
95765962 AATATGTACATATATAAAAAA
1 AATATGTACATA-ATATAAAA
* * *
95765983 AATACGT-GATAATATTAAA
1 AATATGTACATAATATAAAA
95766002 AATATGTACATAATATA
1 AATATGTACATAATATA
95766019 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AATATGTACATAATATAAAA
Found at i:95766060 original size:22 final size:24
Alignment explanation
Indices: 95765997--95766061 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
95765987 CGTGATAATA
*
95765997 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
95766022 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
95766045 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
95766062 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:95766112 original size:33 final size:33
Alignment explanation
Indices: 95766050--95766114 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
95766040 TATAGTTAAG
*
95766050 ATATATACATAAGATAACATGTAAAATATATAT
1 ATATATAAATAAGATAACATGTAAAATATATAT
* *
95766083 ATATATAAATAATATAATAT-TAAAGATATATA
1 ATATATAAATAAGATAACATGTAAA-ATATATA
95766115 CATAAAATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (33 bp):
ATATATAAATAAGATAACATGTAAAATATATAT
Found at i:95766114 original size:25 final size:25
Alignment explanation
Indices: 95766083--95766214 Score: 100
Period size: 25 Copynumber: 5.6 Consensus size: 25
95766073 AAATATATAT
*
95766083 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * * *
95766108 ATATATACATAAAATAGTATAAAAT
1 ATATATACATAATATAATATTAAAG
* *
95766133 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATATTAAAG
* *
95766157 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
*
95766179 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
95766202 AAATATA-ATAATA
1 ATATATACATAATA
95766215 ACAAAAAAGG
Statistics
Matches: 85, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 24 0.28
24 7 0.08
25 38 0.45
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:95766128 original size:16 final size:15
Alignment explanation
Indices: 95766071--95766128 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
95766061 AGATAACATG
95766071 TAAAATATATATATA
1 TAAAATATATATATA
95766086 TATAAATA-ATATAATA
1 TA-AAATATATAT-ATA
* * *
95766102 TTAAAGATATATACA
1 TAAAATATATATATA
95766117 TAAAATAGTATA
1 TAAAATA-TATA
95766129 AAATATATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 17 0.50
16 17 0.50
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (15 bp):
TAAAATATATATATA
Found at i:95766736 original size:30 final size:30
Alignment explanation
Indices: 95766700--95766901 Score: 329
Period size: 30 Copynumber: 6.8 Consensus size: 30
95766690 TAGGTACAAG
* *
95766700 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
95766730 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
95766760 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
95766790 TGGTGGTGGAAAA-GAGT-GCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
95766818 TGGTGGTGGAAAA-AAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
95766847 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
95766877 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
95766902 TGAGAAAAGT
Statistics
Matches: 160, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
28 27 0.17
29 27 0.17
30 106 0.66
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:95766850 original size:87 final size:89
Alignment explanation
Indices: 95766700--95766901 Score: 354
Period size: 87 Copynumber: 2.3 Consensus size: 89
95766690 TAGGTACAAG
* *
95766700 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGA-AAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
95766765 GTGGAAAAGGTGTGGCTAGTGGAGT
65 GTGGAAAAGGTGTGGCTAGTGGAGT
95766790 TGGTGGTGGAAAAGAGT-GCTAGTGGAGTTGGTGGTGGAAAAA-AGTGGCTAGTGGAGTTGGTGG
1 TGGTGGTGGAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGG
95766853 TGGAAAAGGTGTGGCTAGTGGAGT
66 TGGAAAAGGTGTGGCTAGTGGAGT
95766877 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAA-GAGTGGCTAGT
95766902 TGAGAAAAGT
Statistics
Matches: 108, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
87 58 0.54
88 29 0.27
89 11 0.10
90 10 0.09
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (89 bp):
TGGTGGTGGAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGG
TGGAAAAGGTGTGGCTAGTGGAGT
Found at i:95769360 original size:23 final size:24
Alignment explanation
Indices: 95769328--95769383 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
95769318 TGATTTAAAC
* *
95769328 AAATACTTAT-ATTTATATTATTA
1 AAATATTTATAATTTATATTATAA
95769351 AAATATTTATAATTTATATTATAA
1 AAATATTTATAATTTATATTATAA
95769375 AAAT-TTTAT
1 AAATATTTAT
95769384 TATTAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 14 0.47
24 16 0.53
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
AAATATTTATAATTTATATTATAA
Found at i:95769390 original size:15 final size:15
Alignment explanation
Indices: 95769361--95769397 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
95769351 AAATATTTAT
95769361 AATTTATATTATAAA
1 AATTTATATTATAAA
*
95769376 AATTT-TATTATTAA
1 AATTTATATTATAAA
95769390 AATTTATA
1 AATTTATA
95769398 AATTATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AATTTATATTATAAA
Found at i:95769412 original size:38 final size:39
Alignment explanation
Indices: 95769338--95769409 Score: 105
Period size: 36 Copynumber: 1.9 Consensus size: 39
95769328 AAATACTTAT
*
95769338 ATTTATATTATTAAAATATTTATAATTTATATTATAAAA
1 ATTTATATTATTAAAATATTTATAAATTATATTATAAAA
*
95769377 ATTT-TATTATT-AAA-ATTTATAAATTATAATATA
1 ATTTATATTATTAAAATATTTATAAATTATATTATA
95769410 TAATTTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 17 0.55
37 3 0.10
38 7 0.23
39 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (39 bp):
ATTTATATTATTAAAATATTTATAAATTATATTATAAAA
Found at i:95779895 original size:29 final size:29
Alignment explanation
Indices: 95779862--95779917 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
95779852 AATAACAGTT
95779862 AATATTCTTTAGTAACAATCAATTGATTC
1 AATATTCTTTAGTAACAATCAATTGATTC
95779891 AATATTCTTTAGTAACAATCAATTGAT
1 AATATTCTTTAGTAACAATCAATTGAT
95779918 CTTTATTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (29 bp):
AATATTCTTTAGTAACAATCAATTGATTC
Found at i:95779967 original size:18 final size:18
Alignment explanation
Indices: 95779926--95779985 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
95779916 ATCTTTATTG
* * *
95779926 TTCAGTATCAGTCAGTCA
1 TTCAGTATTAATCAGTTA
95779944 -TCAGTATTAATCAGTTA
1 TTCAGTATTAATCAGTTA
* *
95779961 TTCAGTAATAATCATTTA
1 TTCAGTATTAATCAGTTA
95779979 TTCAGTA
1 TTCAGTA
95779986 ACAGTTGCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
17 14 0.39
18 22 0.61
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (18 bp):
TTCAGTATTAATCAGTTA
Found at i:95780030 original size:18 final size:18
Alignment explanation
Indices: 95779951--95780036 Score: 54
Period size: 18 Copynumber: 4.9 Consensus size: 18
95779941 TCATCAGTAT
*
95779951 TAATCAGTTATTCAGTAA
1 TAATCAGTTATTCAATAA
* *
95779969 TAATCATTTATTCAGTAA
1 TAATCAGTTATTCAATAA
* * *
95779987 CAGT-TGCTTATTC---AA
1 TAATCAG-TTATTCAATAA
* *
95780002 TAGTCAATTATTCAATAA
1 TAATCAGTTATTCAATAA
*
95780020 TAATCAGTTATTTAATA
1 TAATCAGTTATTCAATA
95780037 CCTTTATTTA
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
15 11 0.21
18 41 0.79
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (18 bp):
TAATCAGTTATTCAATAA
Found at i:95781611 original size:4 final size:4
Alignment explanation
Indices: 95781602--95781635 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
95781592 CACATTTGTC
95781602 TTTA TTTA TTTTA TTTA TTTA TTTA CTTTA TTTA
1 TTTA TTTA -TTTA TTTA TTTA TTTA -TTTA TTTA
95781636 ATTAATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:95781616 original size:9 final size:8
Alignment explanation
Indices: 95781602--95781635 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
95781592 CACATTTGTC
95781602 TTTATTTA
1 TTTATTTA
95781610 TTTTATTTA
1 -TTTATTTA
95781619 TTTATTTA
1 TTTATTTA
95781627 CTTTATTTA
1 -TTTATTTA
95781636 ATTAATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTATTTA
Found at i:95781620 original size:13 final size:13
Alignment explanation
Indices: 95781601--95781635 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
95781591 ACACATTTGT
95781601 CTTTATTTATTTTA
1 CTTTATTTA-TTTA
95781615 -TTTATTTATTTA
1 CTTTATTTATTTA
95781627 CTTTATTTA
1 CTTTATTTA
95781636 ATTAATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
CTTTATTTATTTA
Found at i:95784106 original size:13 final size:14
Alignment explanation
Indices: 95784088--95784118 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
95784078 CTATCACATC
95784088 TTTTA-TATTTTCT
1 TTTTATTATTTTCT
95784101 TTTTATTATTTTCT
1 TTTTATTATTTTCT
95784115 TTTT
1 TTTT
95784119 TTTCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTATTTTCT
Found at i:95784619 original size:17 final size:18
Alignment explanation
Indices: 95784597--95784631 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
95784587 AGATTGGGCG
95784597 TGTGGGT-AACACGGGTA
1 TGTGGGTCAACACGGGTA
95784614 TGTGGGTCAACACGGGTA
1 TGTGGGTCAACACGGGTA
95784632 CGTCACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.23, C:0.14, G:0.40, T:0.23
Consensus pattern (18 bp):
TGTGGGTCAACACGGGTA
Found at i:95787861 original size:40 final size:40
Alignment explanation
Indices: 95787833--95787978 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
95787823 AAAGCATTCT
* * *
95787833 TTTCAGTGGATTCAGTATGTATGGCTCGAAAGGGCATACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGAGCATACG
* * **
95787873 TTTCAGTAGATTCAGTAGGTGTGGCTCAAAATCGCATACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGAGCATACG
* * * * * *
95787913 TTTTAGTAGATTCAGTAAGCATGGCTCAAAAGTGCATACA
1 TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGAGCATACG
*
95787953 TTTCAGTAGATTCAATAGGTATGGCT
1 TTTCAGTAGATTCAGTAGGTATGGCT
95787979 TGACTGAGCT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (40 bp):
TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGAGCATACG
Found at i:95791772 original size:29 final size:31
Alignment explanation
Indices: 95791734--95791791 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
95791724 TCCGAACCTT
*
95791734 GGGGCAAAAA-TGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATTGTAATTATGAAAAAGTTTA
*
95791764 GGGG-AAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATTGTAATTATGAAAAAGTT
95791792 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.31
Consensus pattern (31 bp):
GGGGCAAAAATTGTAATTATGAAAAAGTTTA
Found at i:95792021 original size:13 final size:13
Alignment explanation
Indices: 95792003--95792034 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
95791993 TTTCCAGCAA
95792003 TTATGAATTTATT
1 TTATGAATTTATT
95792016 TTATGAATTTATT
1 TTATGAATTTATT
*
95792029 TGATGA
1 TTATGA
95792035 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:95792243 original size:50 final size:50
Alignment explanation
Indices: 95792129--95792370 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
95792119 ATTTGGGTAA
* * * *
95792129 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
95792185 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
** * *
95792235 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
95792285 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
95792335 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
95792371 TTTGGCATGT
Statistics
Matches: 163, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 89 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:95792311 original size:100 final size:102
Alignment explanation
Indices: 95792129--95792378 Score: 337
Period size: 100 Copynumber: 2.4 Consensus size: 102
95792119 ATTTGGGTAA
* *
95792129 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGG-TTTGGCATCC---AGATCATGAGAGGTCCC
* *
95792194 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
62 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* *
95792235 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGT-TTGGCATCCAGATCATGAGAGGTCCCCTA
95792297 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
65 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
*
95792335 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGG-TTTGGCAT
95792379 GTTATTATCA
Statistics
Matches: 131, Mismatches: 8, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
99 1 0.01
100 51 0.39
101 38 0.29
102 1 0.01
105 2 0.02
106 38 0.29
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (102 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGTTTGGCATCCAGATCATGAGAGGTCCCCTAT
AAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:95799398 original size:29 final size:30
Alignment explanation
Indices: 95799339--95799396 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
95799329 TCCGAGCCTT
*
95799339 GGGGCAAAAATATAATTATGTAAAAGTTTA
1 GGGGCAAAAATATAATTATGAAAAAGTTTA
* * *
95799369 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATATAATTATGAAAAAGTT
95799397 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATATAATTATGAAAAAGTTTA
Found at i:95799854 original size:50 final size:50
Alignment explanation
Indices: 95799734--95799975 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
95799724 ATTTGGGTAA
* * * *
95799734 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
95799790 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
95799840 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
95799890 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
95799940 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
95799976 TTTGGCATGT
Statistics
Matches: 163, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 89 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:95799914 original size:100 final size:104
Alignment explanation
Indices: 95799738--95799983 Score: 340
Period size: 100 Copynumber: 2.4 Consensus size: 104
95799728 GGGTAAAGAG
* *
95799738 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCCTTAAGATCATGAGAGGTCCCCTGT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCCCTAT
* *
95799803 AAGACCATGTCTGGGACATGGCATGGGCACCGA-GACGAG-AG
63 AAGACCATGTCTGGGACATGGCATGGGCACC-ATCACGAGAAC
* * * *
95799844 GTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTATAAG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTATAAG
95799906 ACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
66 ACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
*
95799945 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
95799984 GTTATTATCA
Statistics
Matches: 126, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.40
101 38 0.30
105 2 0.02
106 34 0.27
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (104 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTATAAG
ACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
Found at i:95807204 original size:21 final size:21
Alignment explanation
Indices: 95807178--95807222 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
95807168 GTGCACACTA
*
95807178 CTATAATTTGTCAATTCATAT
1 CTATAATTCGTCAATTCATAT
95807199 CTATAATTCGTCAATTCATAT
1 CTATAATTCGTCAATTCATAT
95807220 CTA
1 CTA
95807223 GAAGTACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.44
Consensus pattern (21 bp):
CTATAATTCGTCAATTCATAT
Found at i:95812411 original size:2 final size:2
Alignment explanation
Indices: 95812406--95812433 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
95812396 ACACACAAAC
95812406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95812434 GTTTTAGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95814536 original size:35 final size:35
Alignment explanation
Indices: 95814486--95814554 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
95814476 TACTTTTTGA
*
95814486 ATTTAAAGATCCACTTTCAAATTATATATAACAAC
1 ATTTAAAAATCCACTTTCAAATTATATATAACAAC
*
95814521 ATTTAAAAATTCACTTTCAAATTATATATAACAA
1 ATTTAAAAATCCACTTTCAAATTATATATAACAA
95814555 TGTAATATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.36
Consensus pattern (35 bp):
ATTTAAAAATCCACTTTCAAATTATATATAACAAC
Found at i:95814654 original size:21 final size:18
Alignment explanation
Indices: 95814630--95814679 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
95814620 ATAAATTGTG
95814630 TTAAAAATTAAATTATAAGAA
1 TTAAAAATTAAA-T-TAA-AA
**
95814651 TTAAATTTTAAATTAAAA
1 TTAAAAATTAAATTAAAA
95814669 TTAAAAATTAA
1 TTAAAAATTAA
95814680 TCATTTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 11 0.44
19 3 0.12
20 1 0.04
21 10 0.40
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
TTAAAAATTAAATTAAAA
Found at i:95816325 original size:31 final size:31
Alignment explanation
Indices: 95816290--95816355 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
95816280 TTCCATTAGC
*
95816290 AAATTTGTAGTCAGCCTTTCTGCAATGTTAA
1 AAATTTGTAGTCAGCCTTTCTGAAATGTTAA
* *
95816321 AAATTTGTAGTCAGTCTTTCTGAAATGTTAC
1 AAATTTGTAGTCAGCCTTTCTGAAATGTTAA
95816352 AAAT
1 AAAT
95816356 ATAGTTTGCG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (31 bp):
AAATTTGTAGTCAGCCTTTCTGAAATGTTAA
Found at i:95820716 original size:3 final size:3
Alignment explanation
Indices: 95820702--95820734 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
95820692 TTATCTCCAT
95820702 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA
95820735 TCTTTTACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:95822011 original size:23 final size:22
Alignment explanation
Indices: 95821985--95822044 Score: 54
Period size: 23 Copynumber: 2.7 Consensus size: 22
95821975 TTTAATTAGA
95821985 TAATTATTATTTATTTAATATTT
1 TAATTA-TATTTATTTAATATTT
* *
95822008 TAATAAGATATTTA-TTATTATTT
1 TAAT--TATATTTATTTAATATTT
95822031 T-ATTAT-TTTATTTA
1 TAATTATATTTATTTA
95822045 GTATATATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 4 0.13
20 5 0.16
22 2 0.06
23 13 0.42
24 6 0.19
25 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TAATTATATTTATTTAATATTT
Found at i:95822017 original size:31 final size:31
Alignment explanation
Indices: 95821975--95822040 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
95821965 TTTATAATTA
*
95821975 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
* *
95822006 TTTAATAAGATATTTATTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
95822037 TTTA
1 TTTA
95822041 TTTAGTATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:95827617 original size:464 final size:464
Alignment explanation
Indices: 95826815--95827746 Score: 1828
Period size: 464 Copynumber: 2.0 Consensus size: 464
95826805 GTAGACTAAC
*
95826815 TTTGAAAAATCACCAAATATTGTAGGAATCGAATTAGAAGATGAACAAAATATGGAATTAAAGCT
1 TTTGAAAAATCACCAAATATTGTAGGAATCGAATTAGAAGATAAACAAAATATGGAATTAAAGCT
95826880 TATTGAGTCTAGTTTCTCATAGAAGAAATATTGTAACCAATAGATTTGTAAATTTTGAGATATAA
66 TATTGAGTCTAGTTTCTCATAGAAGAAATATTGTAACCAATAGATTTGTAAATTTTGAGATATAA
*
95826945 TGAATTTTGTGAGACAAGGTCAGAATGAATTCGGGTTCCCCTGTTCTGACTTTGAAAAATTATAA
131 TGAATTTTGTGAGACAAGGTCAGAATGAATTCCGGTTCCCCTGTTCTGACTTTGAAAAATTATAA
95827010 AAAAATTGAATAAAAATAATTAGGGACTTAAATTTATATGTCTAGAATTCTGAATGAGTCTATTT
196 AAAAATTGAATAAAAATAATTAGGGACTTAAATTTATATGTCTAGAATTCTGAATGAGTCTATTT
95827075 TTAATAGAAACAAACGAGAAGAACATTTTAATTCTGTATAAAGAGATAATTTATTTTTAGTGAAG
261 TTAATAGAAACAAACGAGAAGAACATTTTAATTCTGTATAAAGAGATAATTTATTTTTAGTGAAG
95827140 AAGGATCAGAATTGTTAGACAACAGAACAGGGGTGACTTTGAAGAATAAACTGTACTGATTGGCT
326 AAGGATCAGAATTGTTAGACAACAGAACAGGGGTGACTTTGAAGAATAAACTGTACTGATTGGCT
95827205 AAACCAAAAATTTTGAAAATTTTATGGTAAAAATATATATGAGTCTAGTTTCAGGGAAAATTAAC
391 AAACCAAAAATTTTGAAAATTTTATGGTAAAAATATATATGAGTCTAGTTTCAGGGAAAATTAAC
95827270 GTATCTTAA
456 GTATCTTAA
95827279 TTTGAAAAATCACCAAATATTGTAGGAATCGAATTAGAAGATAAACAAAATATGGAATTAAAGCT
1 TTTGAAAAATCACCAAATATTGTAGGAATCGAATTAGAAGATAAACAAAATATGGAATTAAAGCT
*
95827344 TATTGAGTCTAGTTTCTCATAGAAGAAATATTGTAACCAATGGATTTGTAAATTTTGAGATATAA
66 TATTGAGTCTAGTTTCTCATAGAAGAAATATTGTAACCAATAGATTTGTAAATTTTGAGATATAA
95827409 TGAATTTTGTGAGACAAGGTCAGAATGAATTCCGGTTCCCCTGTTCTGACTTTGAAAAATTATAA
131 TGAATTTTGTGAGACAAGGTCAGAATGAATTCCGGTTCCCCTGTTCTGACTTTGAAAAATTATAA
95827474 AAAAATTGAATAAAAATAATTAGGGACTTAAATTTATATGTCTAGAATTCTGAATGAGTCTATTT
196 AAAAATTGAATAAAAATAATTAGGGACTTAAATTTATATGTCTAGAATTCTGAATGAGTCTATTT
95827539 TTAATAGAAACAAACGAGAAGAACATTTTAATTCTGTATAAAGAGATAATTTATTTTTAGTGAAG
261 TTAATAGAAACAAACGAGAAGAACATTTTAATTCTGTATAAAGAGATAATTTATTTTTAGTGAAG
*
95827604 AAGGATTAGAATTGTTAGACAACAGAACAGGGGTGACTTTGAAGAATAAACTGTACTGATTGGCT
326 AAGGATCAGAATTGTTAGACAACAGAACAGGGGTGACTTTGAAGAATAAACTGTACTGATTGGCT
95827669 AAACCAAAAATTTTGAAAATTTTATGGTAAAAATATATATGAGTCTAGTTTCAGGGAAAATTAAC
391 AAACCAAAAATTTTGAAAATTTTATGGTAAAAATATATATGAGTCTAGTTTCAGGGAAAATTAAC
95827734 GTATCTTAA
456 GTATCTTAA
95827743 TTTG
1 TTTG
95827747 GATTTCCGTA
Statistics
Matches: 464, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
464 464 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (464 bp):
TTTGAAAAATCACCAAATATTGTAGGAATCGAATTAGAAGATAAACAAAATATGGAATTAAAGCT
TATTGAGTCTAGTTTCTCATAGAAGAAATATTGTAACCAATAGATTTGTAAATTTTGAGATATAA
TGAATTTTGTGAGACAAGGTCAGAATGAATTCCGGTTCCCCTGTTCTGACTTTGAAAAATTATAA
AAAAATTGAATAAAAATAATTAGGGACTTAAATTTATATGTCTAGAATTCTGAATGAGTCTATTT
TTAATAGAAACAAACGAGAAGAACATTTTAATTCTGTATAAAGAGATAATTTATTTTTAGTGAAG
AAGGATCAGAATTGTTAGACAACAGAACAGGGGTGACTTTGAAGAATAAACTGTACTGATTGGCT
AAACCAAAAATTTTGAAAATTTTATGGTAAAAATATATATGAGTCTAGTTTCAGGGAAAATTAAC
GTATCTTAA
Found at i:95829293 original size:5 final size:5
Alignment explanation
Indices: 95829279--95829365 Score: 57
Period size: 5 Copynumber: 16.6 Consensus size: 5
95829269 GATGGGGTAG
* * * * *
95829279 GATAT CATAT GATAT GCTAT GATAC GTTAT GAGATAT GATAT GATAT GATAC
1 GATAT GATAT GATAT GATAT GATAT GATAT --GATAT GATAT GATAT GATAT
* * * *
95829331 GAAATGT GCTAT GACAT GATAT GATAA GATAT GAT
1 G--ATAT GATAT GATAT GATAT GATAT GATAT GAT
95829366 GTAAGATAAG
Statistics
Matches: 60, Mismatches: 18, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
5 53 0.88
7 7 0.12
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (5 bp):
GATAT
Found at i:95829326 original size:27 final size:27
Alignment explanation
Indices: 95829285--95829356 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
95829275 GTAGGATATC
* **
95829285 ATATGATATGCTATGATACGTTATGAG
1 ATATGATATGATATGATACGAAATGAG
*
95829312 ATATGATATGATATGATACGAAATGTG
1 ATATGATATGATATGATACGAAATGAG
* *
95829339 CTATGACATGATATGATA
1 ATATGATATGATATGATA
95829357 AGATATGATG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.35
Consensus pattern (27 bp):
ATATGATATGATATGATACGAAATGAG
Found at i:95830212 original size:19 final size:18
Alignment explanation
Indices: 95830180--95830216 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
95830170 GCCATTTTCT
95830180 GTTAAAAACGAAAAAAAA
1 GTTAAAAACGAAAAAAAA
95830198 GTTAAAAACGAAAAAAAA
1 GTTAAAAACGAAAAAAAA
95830216 G
1 G
95830217 GGGGTTGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.70, C:0.05, G:0.14, T:0.11
Consensus pattern (18 bp):
GTTAAAAACGAAAAAAAA
Found at i:95831389 original size:150 final size:151
Alignment explanation
Indices: 95831205--95831768 Score: 1026
Period size: 150 Copynumber: 3.7 Consensus size: 151
95831195 TATTTTTAAA
* * *
95831205 ATTTTTAAAATTTTCGGATCTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTTATATTA
1 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
95831270 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG-TTTTTATATTAATTTAGTAAATAACCC
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAATAACCC
95831334 TGATTTTGGCCATTTGTTTGT
131 TGATTTTGGCCATTTGTTTGT
*
95831355 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCGTATTTTATTTTTTTATATT
1 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTA-TTTTTTATATT
95831420 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTTATATTAATTTAGTAAATAAC
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG-TTTTTTATATTAATTTAGTAAATAAC
95831485 CCTGATTTTGGCCATTTGTTTGT
129 CCTGATTTTGGCCATTTGTTTGT
95831508 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
1 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
95831573 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGT-TTTTTTATATTAATTTAGTAAATAACCC
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAATAACCC
95831637 TGATTTTGGCCATTTGTTTGT
131 TGATTTTGGCCATTTGTTTGT
* *
95831658 ATTTTTAATATTTTTGGATTTTATTTTTTAAAATATACTATTTTCATATTTTA-TTTTTATATTA
1 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
*
95831722 TTTTAGTACATAATGTTTCAAATATATTATTTTAGTGTTTTTTATAT
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATAT
95831769 AAAAATAATA
Statistics
Matches: 402, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
149 46 0.11
150 159 0.40
151 49 0.12
152 48 0.12
153 100 0.25
ACGTcount: A:0.29, C:0.06, G:0.08, T:0.57
Consensus pattern (151 bp):
ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAATAACCC
TGATTTTGGCCATTTGTTTGT
Found at i:95831937 original size:148 final size:150
Alignment explanation
Indices: 95831770--95832134 Score: 578
Period size: 148 Copynumber: 2.4 Consensus size: 150
95831760 TTTTTATATA
*
95831770 AAAATAATAT-AAAAATAAAATGCGAAAATAGTATATTTTTAAAAATAAAATTCCAAAATTTTAT
1 AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATTCCAAAATTTTA-
* *
95831834 AAATACAAAGAAAGGGCCAAAATTAGAGTTATTTACTAAATTAATAT-AAAAA-A-TAAAATAAT
65 AAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAACACTAAAATAAT
95831896 ACATTTGAAACATTATGTACT
130 ACATTTGAAACATTATGTACT
* ** *
95831917 AAAATAATATAAAAAATAAAATACGAAAGTAGTATATTTTTAAAAATAAAATCTGGAAATTTTTA
1 AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAAT-TCCAAAATTTTA
95831982 AAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAACACTAAAATAAT
65 AAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAACACTAAAATAAT
95832047 ACATTTGAAACATTATGTACT
130 ACATTTGAAACATTATGTACT
* * *
95832068 AAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAGA-TCCGAAAATTTTA
1 AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATTCC-AAAATTTTA
95832132 AAA
65 AAA
95832135 ATACGAAAAT
Statistics
Matches: 198, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
147 10 0.05
148 84 0.42
149 15 0.08
150 12 0.06
151 77 0.39
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.30
Consensus pattern (150 bp):
AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATTCCAAAATTTTAA
AATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAACACTAAAATAATA
CATTTGAAACATTATGTACT
Found at i:95832116 original size:151 final size:148
Alignment explanation
Indices: 95831770--95832138 Score: 573
Period size: 151 Copynumber: 2.5 Consensus size: 148
95831760 TTTTTATATA
* *
95831770 AAAATAATAT-AAAAATAAAATGCGAAAATAGTATATTTTTAAAAATAAAAT-TCCAAAA-TTTT
1 AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATCT-GAAAATTTTT
* *
95831832 ATAAATACAAAGAAAGGGCCAAAATTAGAGTTATTTACTAAATTAATATAAAAAATAAAATAATA
65 A-AAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAATAAAATAATA
95831897 CATTTGAAACATTATGTACT
129 CATTTGAAACATTATGTACT
* *
95831917 AAAATAATATAAAAAATAAAATACGAAAGTAGTATATTTTTAAAAATAAAATCTGGAAATTTTTA
1 AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATCTGAAAATTTTTA
95831982 AAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAACACTAAAATAAT
66 AAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATAT-AAAAA-A-TAAAATAAT
95832047 ACATTTGAAACATTATGTACT
128 ACATTTGAAACATTATGTACT
* * * * *
95832068 AAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAGATCCGAAAATTTTAA
1 AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATCTGAAAATTTTTA
95832133 AAATAC
66 AAATAC
95832139 GAAAATTTTT
Statistics
Matches: 203, Mismatches: 13, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
147 10 0.05
148 87 0.43
149 11 0.05
150 1 0.00
151 94 0.46
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (148 bp):
AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATCTGAAAATTTTTA
AAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAATAAAATAATACA
TTTGAAACATTATGTACT
Found at i:95832265 original size:17 final size:16
Alignment explanation
Indices: 95832245--95832287 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
95832235 TTGCATCACT
95832245 AAAATTATTATTAAATA
1 AAAATTATT-TTAAATA
* *
95832262 AAAATTAATTTAAATT
1 AAAATTATTTTAAATA
95832278 AAAATATATT
1 AAAAT-TATT
95832288 GAACTACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAAATTATTTTAAATA
Found at i:95832274 original size:16 final size:17
Alignment explanation
Indices: 95832245--95832282 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
95832235 TTGCATCACT
*
95832245 AAAATTATTATTAAATA
1 AAAATTAATATTAAATA
*
95832262 AAAATTAAT-TTAAATT
1 AAAATTAATATTAAATA
95832278 AAAAT
1 AAAAT
95832283 ATATTGAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATTAATATTAAATA
Found at i:95832515 original size:20 final size:21
Alignment explanation
Indices: 95832492--95832532 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
95832482 TCTTTTTTTT
95832492 ATTT-TTTTTCGTTTTTAACA
1 ATTTCTTTTTCGTTTTTAACA
95832512 ATTTCTTTTTCGTTTTTAACA
1 ATTTCTTTTTCGTTTTTAACA
95832533 TAAAATGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.63
Consensus pattern (21 bp):
ATTTCTTTTTCGTTTTTAACA
Found at i:95835634 original size:14 final size:14
Alignment explanation
Indices: 95835612--95835649 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
95835602 TAATTTTAAT
*
95835612 TAAACTTTAAATCA
1 TAAATTTTAAATCA
*
95835626 TAAATTTTAAATCC
1 TAAATTTTAAATCA
95835640 TAAATTTTAA
1 TAAATTTTAA
95835650 TTAAATCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (14 bp):
TAAATTTTAAATCA
Found at i:95847220 original size:6 final size:6
Alignment explanation
Indices: 95847209--95847235 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
95847199 TGTTGTAATC
95847209 ATTTTA ATTTTA ATTTTA ATTTTA ATT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATT
95847236 AATGAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
ATTTTA
Found at i:95864332 original size:21 final size:20
Alignment explanation
Indices: 95864308--95864350 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
95864298 TGATCAGTTT
95864308 AATTGAAAAGATTAT-TAAAAA
1 AATTGAAAA-A-TATGTAAAAA
*
95864329 AATTTAAAAATATGTAAAAA
1 AATTGAAAAATATGTAAAAA
95864349 AA
1 AA
95864351 CAGGAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 9 0.45
21 8 0.40
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (20 bp):
AATTGAAAAATATGTAAAAA
Found at i:95865458 original size:16 final size:16
Alignment explanation
Indices: 95865430--95865469 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
95865420 ATATATATGA
95865430 AATTTTGATTTTGAT-T
1 AATTTT-ATTTTGATCT
95865446 CAATTTTATTTTGATCT
1 -AATTTTATTTTGATCT
95865463 AATTTTA
1 AATTTTA
95865470 CATATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (16 bp):
AATTTTATTTTGATCT
Found at i:95867626 original size:3 final size:3
Alignment explanation
Indices: 95867618--95867642 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
95867608 TTTTAAAATT
95867618 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
95867643 ATACAATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:95867866 original size:11 final size:10
Alignment explanation
Indices: 95867843--95867876 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
95867833 ATAGTAAGTG
95867843 TTTTAAATTT
1 TTTTAAATTT
95867853 TTTTAAAGTTT
1 TTTTAAA-TTT
95867864 TTTTAAATTT
1 TTTTAAATTT
95867874 TTT
1 TTT
95867877 AAAAAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:95870710 original size:28 final size:27
Alignment explanation
Indices: 95870679--95870736 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
95870669 GAACTGCTTT
*
95870679 TTTAAAA-AATTAAAAATTATTAAAATTA
1 TTTAAAAGAA-TAAAAATTA-TAAAAATA
95870707 TTTAAAAGAATAAAAATTATAAAAATA
1 TTTAAAAGAATAAAAATTATAAAAATA
95870734 TTT
1 TTT
95870737 TTTAATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 10 0.36
28 16 0.57
29 2 0.07
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (27 bp):
TTTAAAAGAATAAAAATTATAAAAATA
Found at i:95871122 original size:18 final size:19
Alignment explanation
Indices: 95871080--95871122 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
95871070 AATTAACGCA
95871080 TAATTT-ATTATAAAACTT
1 TAATTTAATTATAAAACTT
*
95871098 TAA-TTAATTATCAAA-TT
1 TAATTTAATTATAAAACTT
95871115 TAATTTAA
1 TAATTTAA
95871123 AAAGATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATTTAATTATAAAACTT
Found at i:95875120 original size:68 final size:68
Alignment explanation
Indices: 95874981--95875147 Score: 176
Period size: 68 Copynumber: 2.5 Consensus size: 68
95874971 GTGAACTTCT
* * * * * * *
95874981 TATGTTGCCACAGCCTACCTATGGTCTTACATAGTATTAACCTATGTTTACTGTCCTACTGGACT
1 TATGTTACCATAGCCTAGCTATGGTCTTACACAATATTAACCCATGTTTACTGTCCTACTAGACT
95875046 CTA
66 CTA
* * * * *
95875049 TATGTTATCATAGTCTAGCTATGGTTTTACACAATATTGACCCATGTTTACTGTCTTAGC-AGAC
1 TATGTTACCATAGCCTAGCTATGGTCTTACACAATATTAACCCATGTTTACTGTCCTA-CTAGAC
95875113 T-TCA
65 TCT-A
* *
95875117 TATGTTGCCATAGCCTAGTTATGGTCTTACA
1 TATGTTACCATAGCCTAGCTATGGTCTTACA
95875148 TATCAGATCT
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
67 1 0.01
68 78 0.98
69 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (68 bp):
TATGTTACCATAGCCTAGCTATGGTCTTACACAATATTAACCCATGTTTACTGTCCTACTAGACT
CTA
Found at i:95877197 original size:17 final size:16
Alignment explanation
Indices: 95877175--95877207 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
95877165 ATATGGTCTT
95877175 TTAACCAACTCATATAA
1 TTAACCAACTCA-ATAA
95877192 TTAACCAACTCAATAA
1 TTAACCAACTCAATAA
95877208 ATAATTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.27
Consensus pattern (16 bp):
TTAACCAACTCAATAA
Found at i:95879044 original size:5 final size:5
Alignment explanation
Indices: 95879034--95879069 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
95879024 GACCAAAATC
95879034 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A
95879070 TTGGTAGTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:95911052 original size:26 final size:26
Alignment explanation
Indices: 95911021--95911071 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
95911011 TAGAAGTACA
*
95911021 TAATTTTA-CTTTCTTATTCTACAAGT
1 TAATTTTAGCTTT-TTAGTCTACAAGT
95911047 TAATTTTAGCTTTTTAGTCTACAAG
1 TAATTTTAGCTTTTTAGTCTACAAG
95911072 AATAAAGCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (26 bp):
TAATTTTAGCTTTTTAGTCTACAAGT
Found at i:95916239 original size:102 final size:102
Alignment explanation
Indices: 95916063--95916253 Score: 265
Period size: 102 Copynumber: 1.9 Consensus size: 102
95916053 CTGGTTTCAC
* * * * * * * * *
95916063 TATCATCTAATTTCTTTAAATTATTACGCTAGAATTCTTTTCATTTTCAAAGAGATACAGAAGCA
1 TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
*
95916128 TAAATACGGCTAAATGGCAAGAACATGACTGCTAGTT
66 TAAATACGGCTAAATGACAAGAACATGACTGCTAGTT
* * *
95916165 TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAATGAGATAAAGATGTA
1 TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
95916230 TAAATACGGCTAAATGACAAGAAC
66 TAAATACGGCTAAATGACAAGAAC
95916254 GTTCATGTAG
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
102 76 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (102 bp):
TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
TAAATACGGCTAAATGACAAGAACATGACTGCTAGTT
Done.