Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 289 of 344
Found at i:96733021 original size:27 final size:27
Alignment explanation
Indices: 96732991--96733082 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
96732981 ACCCCTATTA
* *
96732991 GGTAAAAAGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
96733018 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
96733045 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
96733072 GGTAAAATGAC
1 GGTAAAATGAC
96733083 GAATATGCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:96733976 original size:25 final size:26
Alignment explanation
Indices: 96733863--96733986 Score: 180
Period size: 26 Copynumber: 4.8 Consensus size: 26
96733853 GAGGAAGTGC
* *
96733863 AAAAGGGCTTATGCACTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
96733889 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
96733915 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
96733941 AAAAAGGGCTT-TACCCCAGTTTACCG
1 -AAAAGGGCTTATGCCCCAGTTTACCG
96733967 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
96733987 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
25 19 0.21
26 60 0.67
27 10 0.11
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:96734190 original size:42 final size:42
Alignment explanation
Indices: 96734131--96734218 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
96734121 TAGTCTTCCC
* ** * *
96734131 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGGTATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
96734173 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
96734215 AAAT
1 AAAT
96734219 TGGCCTAAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:96734284 original size:31 final size:31
Alignment explanation
Indices: 96734246--96734324 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
96734236 CGTTTACAGT
* *
96734246 AAAGGCTTTGGCCTAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
96734277 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
96734308 AAAGGCTTCGGCCCAAT
1 AAAGGCTTCGGCCCAAT
96734325 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:96738318 original size:25 final size:26
Alignment explanation
Indices: 96738290--96738437 Score: 203
Period size: 26 Copynumber: 5.8 Consensus size: 26
96738280 CCTCTTTAAT
*
96738290 AACTGGGGCA-AAGCCCTTTTCTGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
***
96738315 AACTGGGGCA-AAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
96738340 AACTGGGACATAAGCCCTTTTAGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
96738366 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
96738391 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
96738417 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
96738438 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
25 53 0.49
26 55 0.51
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:96738354 original size:26 final size:25
Alignment explanation
Indices: 96738284--96738437 Score: 179
Period size: 25 Copynumber: 6.1 Consensus size: 25
96738274 GCCTAGCCTC
96738284 TTTAAT-AACTGGGGCAAAGCCCTT
1 TTTAATAAACTGGGGCAAAGCCCTT
*
96738308 TTCT-GTAAACTGGGGCAAAGCCCTT
1 TT-TAATAAACTGGGGCAAAGCCCTT
*
96738333 TTTAATAAACTGGGACATAAGCCC-T
1 TTTAATAAACTGGGGCA-AAGCCCTT
*
96738358 TTTAGGTAAACTGGGGCAAAGCCCTT
1 TTTA-ATAAACTGGGGCAAAGCCCTT
*
96738384 TTCAATAAACTGGGGCATAAGCCCTT
1 TTTAATAAACTGGGGCA-AAGCCCTT
***
96738410 TTCGGTAAACTGGGGCATAAGCCCTT
1 TTTAATAAACTGGGGCA-AAGCCCTT
96738436 TT
1 TT
96738438 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
24 4 0.04
25 55 0.48
26 55 0.48
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (25 bp):
TTTAATAAACTGGGGCAAAGCCCTT
Found at i:96738358 original size:51 final size:51
Alignment explanation
Indices: 96738284--96738437 Score: 249
Period size: 51 Copynumber: 3.0 Consensus size: 51
96738274 GCCTAGCCTC
*
96738284 TTTAAT-AACTGGGGCA-AAGCCCTTTTCTGTAAACTGGGGCAAAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTT
* *
96738333 TTTAATAAACTGGGACATAAGCCCTTTTAGGTAAACTGGGGCAAAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTT
*
96738384 TTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTT
96738436 TT
1 TT
96738438 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
49 6 0.06
50 9 0.09
51 71 0.74
52 10 0.10
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (51 bp):
TTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTT
Found at i:96738512 original size:20 final size:20
Alignment explanation
Indices: 96738487--96738561 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
96738477 TTATGAATTC
*
96738487 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
96738507 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
96738527 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
96738547 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
96738562 TCCCACGTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:96738518 original size:11 final size:11
Alignment explanation
Indices: 96738487--96738542 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
96738477 TTATGAATTC
96738487 ATCATGTGCAT
1 ATCATGTGCAT
* *
96738498 TTCA--TACAT
1 ATCATGTGCAT
96738507 ATCATGTGCAT
1 ATCATGTGCAT
*
96738518 ATCA--TACAT
1 ATCATGTGCAT
96738527 ATCATGTGCAT
1 ATCATGTGCAT
96738538 ATCAT
1 ATCAT
96738543 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:96738559 original size:9 final size:10
Alignment explanation
Indices: 96738504--96738560 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
96738494 GCATTTCATA
96738504 CATATCATGT
1 CATATCATGT
*
96738514 GCATATCAT-A
1 -CATATCATGT
96738524 CATATCATGT
1 CATATCATGT
*
96738534 GCATATCATAT
1 -CATATCATGT
96738545 CA-ATCATGT
1 CATATCATGT
96738554 -ATATCAT
1 CATATCAT
96738561 ATCCCACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:96739785 original size:22 final size:22
Alignment explanation
Indices: 96739753--96739796 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
96739743 GCTGGAAAAG
*
96739753 AAAAGAGAGAAAATGGCTACACC
1 AAAAGAGAGAAAACGGC-ACACC
96739776 AAAAG-GAGAAAACGGCACACC
1 AAAAGAGAGAAAACGGCACACC
96739797 CTAGACCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 10 0.50
23 5 0.25
ACGTcount: A:0.52, C:0.20, G:0.23, T:0.05
Consensus pattern (22 bp):
AAAAGAGAGAAAACGGCACACC
Found at i:96741042 original size:13 final size:13
Alignment explanation
Indices: 96741024--96741048 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96741014 ATTTTTTTTA
96741024 CATATGTTTGTTG
1 CATATGTTTGTTG
96741037 CATATGTTTGTT
1 CATATGTTTGTT
96741049 ATTATTTACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.20, T:0.56
Consensus pattern (13 bp):
CATATGTTTGTTG
Found at i:96744243 original size:13 final size:13
Alignment explanation
Indices: 96744225--96744249 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96744215 CATCCATTTC
96744225 AAAAAAAAGAAAG
1 AAAAAAAAGAAAG
96744238 AAAAAAAAGAAA
1 AAAAAAAAGAAA
96744250 AAAGAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAAG
Found at i:96745774 original size:21 final size:21
Alignment explanation
Indices: 96745741--96745813 Score: 83
Period size: 21 Copynumber: 3.3 Consensus size: 21
96745731 TCAAAAAATA
*
96745741 AAAAAAGGCAAAAAAATAAAAGG
1 AAAAAA-G-AAAAAAATAAAAAG
*
96745764 AAAAGAGAAAAAAATAAAAAG
1 AAAAAAGAAAAAAATAAAAAG
*
96745785 AAAAAAGAGAAAAAAGAAAAAAG
1 AAAAAAGA-AAAAAA-TAAAAAG
96745808 AAAAAA
1 AAAAAA
96745814 TGGAGAGGCC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.45
22 7 0.16
23 17 0.39
ACGTcount: A:0.81, C:0.01, G:0.15, T:0.03
Consensus pattern (21 bp):
AAAAAAGAAAAAAATAAAAAG
Found at i:96745812 original size:7 final size:7
Alignment explanation
Indices: 96745758--96745813 Score: 60
Period size: 7 Copynumber: 7.7 Consensus size: 7
96745748 GCAAAAAAAT
*
96745758 AAAAGGA
1 AAAAAGA
*
96745765 AAAGAGA
1 AAAAAGA
96745772 AAAAA-A
1 AAAAAGA
96745778 TAAAAAGAA
1 -AAAAAG-A
96745787 AAAAGAGA
1 AAAA-AGA
96745795 AAAAAGA
1 AAAAAGA
96745802 AAAAAGA
1 AAAAAGA
96745809 AAAAA
1 AAAAA
96745814 TGGAGAGGCC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
6 1 0.02
7 29 0.69
8 9 0.21
9 3 0.07
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (7 bp):
AAAAAGA
Found at i:96747358 original size:207 final size:207
Alignment explanation
Indices: 96747003--96748542 Score: 2677
Period size: 207 Copynumber: 7.4 Consensus size: 207
96746993 CGACGGAGAG
* * ** *
96747003 CAAATCGAAGACATAGTTGATTTGGCTTTCACGTGCTTACGACGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
96747068 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
96747133 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
96747198 GCTTACAAGGAA
196 GCTTACAAGGAA
*
96747210 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGCCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* ** *
96747275 GCATCTCTGTATTGTTAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCCACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
96747340 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
96747405 GCTTACAAGGAA
196 GCTTACAAGGAA
*
96747417 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGAAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
96747482 GCATCTTTGTATTGTTAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
96747547 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
96747612 GCTTACAAGGAA
196 GCTTACAAGGAA
* * *
96747624 CAAGTCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
96747689 GCATCTTTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
96747754 CATAGCAGATCTGGCCTTTAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCATTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
96747819 GCTTACAAGGAA
196 GCTTACAAGGAA
*
96747831 CAAATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
96747896 GCATCTCTGTATTGTCAGTGAACAAATCAAAGTTTGGCGTCACCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
96747961 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTTGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
96748026 GCTTACAAGGAA
196 GCTTACAAGGAA
*
96748038 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTTTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
96748103 GCATCTCTATATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
96748168 CATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
96748233 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
96748245 CAAATCGAAGACATAGCTAATTTGGCTTTCACGTGTTTATGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
96748310 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACAGAGGACAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* ** * * * *
96748375 TATAGCAGATCTAACCTTCAGATGATTAGACTGAAG-TAGATCCAAGATGGTTTGGTATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
96748439 GCTTACAAGGAG
196 GCTTACAAGGAA
* *
96748451 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
96748516 GCATCTCTGTATTGTCAGGGAACAAAT
66 GCATCTCTGTATTGTCAGAGAACAAAT
96748543 TGAAGAAGCA
Statistics
Matches: 1275, Mismatches: 58, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
206 124 0.10
207 1151 0.90
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAA
Found at i:96747719 original size:87 final size:88
Alignment explanation
Indices: 96747546--96747720 Score: 196
Period size: 87 Copynumber: 2.0 Consensus size: 88
96747536 GAGGGCAGAC
* *
96747546 ACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTG
1 ACATAGCAGATCTGGCCTTCAGATGTTTACACTGAAGCAAGATCCAAGATGATTTGGCATCCTTG
* *
96747611 TGCTTACAAGGAACAAGTCAAAG
66 TGATTACAAGGAACAAATCAAAG
* * * * * *
96747634 ACATAGCTGATTTGGCTTTCACG-TGTTTACGCTGAAGCAAG-TCTAAGATGATTTGGCATCTTT
1 ACATAGCAGATCTGGCCTTCA-GATGTTTACACTGAAGCAAGATCCAAGATGATTTGGCATCCTT
*
96747697 GT-ATTGTC-AGAGAACAAATCAAAG
65 GTGATT-ACAAG-GAACAAATCAAAG
96747721 TTTGGCATCT
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
86 4 0.05
87 34 0.47
88 34 0.47
89 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (88 bp):
ACATAGCAGATCTGGCCTTCAGATGTTTACACTGAAGCAAGATCCAAGATGATTTGGCATCCTTG
TGATTACAAGGAACAAATCAAAG
Found at i:96748980 original size:17 final size:17
Alignment explanation
Indices: 96748936--96749091 Score: 222
Period size: 17 Copynumber: 8.8 Consensus size: 17
96748926 CTTCAATGAT
*
96748936 ATACAATCTTAGATGTG
1 ATACAATCTTAGATATG
96748953 ATATGCAATCTTAGATATG
1 ATA--CAATCTTAGATATG
96748972 ATACAATCTTAGATATG
1 ATACAATCTTAGATATG
*
96748989 ATTGCAATCTTAGATATG
1 A-TACAATCTTAGATATG
96749007 ATACAATCTTAGATATG
1 ATACAATCTTAGATATG
*
96749024 ATTGCAATCTTAGATATG
1 A-TACAATCTTAGATATG
96749042 ATACAATCTTAGATATG
1 ATACAATCTTAGATATG
96749059 ATTACAATCTTAGATATG
1 A-TACAATCTTAGATATG
96749077 ATATACAATCTTAGA
1 --ATACAATCTTAGA
96749092 AGATATGATT
Statistics
Matches: 127, Mismatches: 5, Indels: 12
0.88 0.03 0.08
Matches are distributed among these distances:
17 50 0.39
18 48 0.38
19 28 0.22
20 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (17 bp):
ATACAATCTTAGATATG
Found at i:96748998 original size:18 final size:18
Alignment explanation
Indices: 96748931--96749091 Score: 238
Period size: 18 Copynumber: 8.9 Consensus size: 18
96748921 ATAATCTTCA
96748931 ATGATATACAATCTTAGAT
1 ATGAT-TACAATCTTAGAT
* *
96748950 GTGATATGCAATCTTAGAT
1 ATGAT-TACAATCTTAGAT
96748969 ATGA-TACAATCTTAGAT
1 ATGATTACAATCTTAGAT
*
96748986 ATGATTGCAATCTTAGAT
1 ATGATTACAATCTTAGAT
96749004 ATGA-TACAATCTTAGAT
1 ATGATTACAATCTTAGAT
*
96749021 ATGATTGCAATCTTAGAT
1 ATGATTACAATCTTAGAT
96749039 ATGA-TACAATCTTAGAT
1 ATGATTACAATCTTAGAT
96749056 ATGATTACAATCTTAGAT
1 ATGATTACAATCTTAGAT
96749074 ATGATATACAATCTTAGA
1 ATGAT-TACAATCTTAGA
96749092 AGATATGATT
Statistics
Matches: 130, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
17 48 0.37
18 50 0.38
19 32 0.25
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (18 bp):
ATGATTACAATCTTAGAT
Found at i:96749002 original size:35 final size:35
Alignment explanation
Indices: 96748936--96749091 Score: 267
Period size: 35 Copynumber: 4.4 Consensus size: 35
96748926 CTTCAATGAT
*
96748936 ATACAATCTTAGATGTGATATGCAATCTTAGATATG
1 ATACAATCTTAGATATGAT-TGCAATCTTAGATATG
96748972 ATACAATCTTAGATATGATTGCAATCTTAGATATG
1 ATACAATCTTAGATATGATTGCAATCTTAGATATG
96749007 ATACAATCTTAGATATGATTGCAATCTTAGATATG
1 ATACAATCTTAGATATGATTGCAATCTTAGATATG
*
96749042 ATACAATCTTAGATATGATTACAATCTTAGATATG
1 ATACAATCTTAGATATGATTGCAATCTTAGATATG
96749077 ATATACAATCTTAGA
1 --ATACAATCTTAGA
96749092 AGATATGATT
Statistics
Matches: 116, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
35 85 0.73
36 18 0.16
37 13 0.11
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (35 bp):
ATACAATCTTAGATATGATTGCAATCTTAGATATG
Found at i:96757445 original size:23 final size:24
Alignment explanation
Indices: 96757417--96757463 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
96757407 AAACTTCAAA
96757417 ATATCT-AAATATTCAACAATTTC
1 ATATCTAAAATATTCAACAATTTC
* *
96757440 ATATCTCAAAATCTTTAACAATTT
1 ATATCT-AAAATATTCAACAATTT
96757464 TAAAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
25 14 0.70
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (24 bp):
ATATCTAAAATATTCAACAATTTC
Found at i:96758270 original size:14 final size:14
Alignment explanation
Indices: 96758251--96758279 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
96758241 CCACCAAACT
96758251 GTCCCCCACTCGAA
1 GTCCCCCACTCGAA
96758265 GTCCCCCACTCGAA
1 GTCCCCCACTCGAA
96758279 G
1 G
96758280 ATGAATGGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.48, G:0.17, T:0.14
Consensus pattern (14 bp):
GTCCCCCACTCGAA
Found at i:96770970 original size:43 final size:43
Alignment explanation
Indices: 96770905--96770988 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
96770895 TGACAAGGCA
*
96770905 AATGTAGTTGTTGATGCCTTAAGTAGAAAGCAAATGGCAGACG
1 AATGTAGTTGCTGATGCCTTAAGTAGAAAGCAAATGGCAGACG
* * *
96770948 AATGTAGTTGCTGATGCTTTAAGTAGAGAGTAAATGGCAGA
1 AATGTAGTTGCTGATGCCTTAAGTAGAAAGCAAATGGCAGA
96770989 GTTAAGAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.27
Consensus pattern (43 bp):
AATGTAGTTGCTGATGCCTTAAGTAGAAAGCAAATGGCAGACG
Found at i:96778549 original size:18 final size:19
Alignment explanation
Indices: 96778512--96778550 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
96778502 AAATCATATT
96778512 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
96778531 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
96778549 TA
1 TA
96778551 AAAAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:96779633 original size:41 final size:40
Alignment explanation
Indices: 96779576--96779672 Score: 149
Period size: 41 Copynumber: 2.4 Consensus size: 40
96779566 GTTATATAAC
* *
96779576 TCTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGG
1 TCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-AG
96779617 TCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAG
1 TCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAG
* *
96779657 TTTTTAACGGCGTTTT
1 TCTTTAGCGGCGTTTT
96779673 TGTTAAAACG
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 15 0.29
41 37 0.71
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.33
Consensus pattern (40 bp):
TCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAG
Found at i:96781288 original size:35 final size:35
Alignment explanation
Indices: 96781243--96781320 Score: 149
Period size: 35 Copynumber: 2.3 Consensus size: 35
96781233 GATATAAACC
96781243 TTCAT-GCATGTCTAATCTCAAAAGAAACTAAGTT
1 TTCATGGCATGTCTAATCTCAAAAGAAACTAAGTT
96781277 TTCATGGCATGTCTAATCTCAAAAGAAACTAAGTT
1 TTCATGGCATGTCTAATCTCAAAAGAAACTAAGTT
96781312 TTCATGGCA
1 TTCATGGCA
96781321 AACATTACTA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 5 0.12
35 38 0.88
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (35 bp):
TTCATGGCATGTCTAATCTCAAAAGAAACTAAGTT
Found at i:96790382 original size:42 final size:43
Alignment explanation
Indices: 96790270--96790455 Score: 196
Period size: 43 Copynumber: 4.3 Consensus size: 43
96790260 CGTTTTTAAG
* * * * *
96790270 AAAAAACGCCGCTAAAGGCAAGGACATTTAGCGGCGCTTTTAT
1 AAAAAACACCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTAT
* * * *
96790313 AAAAAACGCCACTAAAAACCA-AGACCTTTAGCGGCGCTTCTA-
1 AAAAAACACCGCTAAAGACCAGA-ACCTTTAGCGGCGCTTTTAT
*
96790355 AAAAAACACCGTTAAAGACCAGAACCTTTAGCGGCGCTTTTAT
1 AAAAAACACCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTAT
* * * * * *
96790398 AAAAAACATCGCTACAGACCTGTACTTTTAGCGGCGCTTTTTT
1 AAAAAACACCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTAT
*
96790441 AAAAAACGCCGCTAA
1 AAAAAACACCGCTAA
96790456 TTTGCCCAGT
Statistics
Matches: 118, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
42 35 0.30
43 83 0.70
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (43 bp):
AAAAAACACCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTAT
Found at i:96792733 original size:26 final size:26
Alignment explanation
Indices: 96792704--96792814 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
96792694 AGCATGGCTG
* *
96792704 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
96792730 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
96792758 CCAGAACAG-TATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** * *
96792784 CCAGATTAGAGAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
96792811 CCAG
1 CCAG
96792815 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 27 0.38
27 30 0.42
28 15 0.21
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:96792786 original size:54 final size:53
Alignment explanation
Indices: 96792704--96792814 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 53
96792694 AGCATGGCTG
* *
96792704 CCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-TAGAGAATCGTGGCAGAGCCA
* * *
96792758 CCAGAACAG-TATATGTGGCAGAGCCACCAGATTAGAGAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATTAGAGAATCGTGGCAGAGCCA
96792811 CCAG
1 CCAG
96792815 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
53 24 0.47
54 27 0.53
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATTAGAGAATCGTGGCAGAGCCA
Found at i:96792809 original size:27 final size:27
Alignment explanation
Indices: 96792717--96792814 Score: 101
Period size: 28 Copynumber: 3.6 Consensus size: 27
96792707 GAACAGATAA
* * *
96792717 TGTGACAGAGTCACCAGATATAGATAAT
1 TGTGGCAGAGCCACCAGAT-TAGAGAAT
* * *
96792745 CGTGGCAGAGCCACCAGA--ACAGTAT
1 TGTGGCAGAGCCACCAGATTAGAGAAT
96792770 ATGTGGCAGAGCCACCAGATTAGAGAAT
1 -TGTGGCAGAGCCACCAGATTAGAGAAT
*
96792798 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
96792815 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
25 4 0.07
26 17 0.30
27 16 0.28
28 20 0.35
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (27 bp):
TGTGGCAGAGCCACCAGATTAGAGAAT
Found at i:96794258 original size:24 final size:24
Alignment explanation
Indices: 96794231--96794277 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
96794221 CTAGATTTCC
**
96794231 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
96794255 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
96794278 CTCCTGTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:96807152 original size:27 final size:26
Alignment explanation
Indices: 96807115--96807226 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
96807105 AGCATGGCTG
* *
96807115 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
96807141 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
96807169 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
96807196 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
96807223 CCAG
1 CCAG
96807227 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:96807207 original size:54 final size:54
Alignment explanation
Indices: 96807117--96807223 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
96807107 CATGGCTGCC
*
96807117 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
* * *
96807171 AGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
96807224 CAGGACGCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
Found at i:96808670 original size:24 final size:24
Alignment explanation
Indices: 96808643--96808689 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
96808633 CTAGATTTCC
**
96808643 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
96808667 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
96808690 CTCCTGTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:96811737 original size:12 final size:12
Alignment explanation
Indices: 96811720--96811745 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
96811710 GTCATCCTCC
96811720 TCATCAGATTCA
1 TCATCAGATTCA
96811732 TCATCAGATTCA
1 TCATCAGATTCA
96811744 TC
1 TC
96811746 CCTCGATCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:96819007 original size:15 final size:15
Alignment explanation
Indices: 96818987--96819018 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
96818977 AAATAATAAT
*
96818987 TTATATATATTTATC
1 TTATATACATTTATC
96819002 TTATATACATTTATC
1 TTATATACATTTATC
96819017 TT
1 TT
96819019 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:96820061 original size:39 final size:41
Alignment explanation
Indices: 96819925--96820101 Score: 261
Period size: 41 Copynumber: 4.4 Consensus size: 41
96819915 GTTATATGAC
* * *
96819925 TTTTAGCAGCGTTTTACCAAAAGCGCCACTAGTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
96819966 TTTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
96820007 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-G-
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
96820046 TTTTAGCGGTGTTTTACCAAAAGCGCAGCTATTGCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
96820086 TTTTAGCGGCGTTTTA
1 TTTTAGCGGCGTTTTA
96820102 GTAAAAAACG
Statistics
Matches: 127, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.28
40 16 0.13
41 76 0.60
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:96820123 original size:80 final size:80
Alignment explanation
Indices: 96819925--96820126 Score: 235
Period size: 80 Copynumber: 2.5 Consensus size: 80
96819915 GTTATATGAC
* * * * *
96819925 TTTTAGCAGCGTTTTACCAAAAGCGCCACTAGTGCTCTGGTTTTTAGCAGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCT-G-TTTTAGCAGCGTTTTACCAAAAGC
* *
96819990 GCCGCTAATGCTCTGGT
64 GCAGCTAATGCTCTGAT
* * * *
96820007 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTTTTAGCGGTGTTTTACCAAAAGCGC
1 TTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCTGTTTTAGCAGCGTTTTACCAAAAGCGC
*
96820072 AGCTATTGCTCT-AT
66 AGCTAATGCTCTGAT
* **
96820086 TTTTAGCGGCGTTTTAGTAAAAAACGCCGCTGTTGCTCTGT
1 TTTTAGCGGCGTTTTA-CAAAAAACGCCGCTAATGCTCTGT
96820127 ATTTTAAAAT
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 17 0.16
80 53 0.50
81 1 0.01
82 35 0.33
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (80 bp):
TTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCTGTTTTAGCAGCGTTTTACCAAAAGCGC
AGCTAATGCTCTGAT
Found at i:96823663 original size:27 final size:27
Alignment explanation
Indices: 96823557--96823663 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
96823547 AGGAAGCGTC
*
96823557 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
96823584 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
* *
96823611 CTGGTGGTTCGGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* * *
96823639 CTGGTGACCCTGTCACATTATCTGT
1 CTGGTGGCTCTGCCACATTATCTGT
96823664 TTTGGCAGCC
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.76
28 14 0.21
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:96837412 original size:27 final size:27
Alignment explanation
Indices: 96837371--96837459 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 27
96837361 GTGACAGAGT
*
96837371 CACCAGATACAGATATTTTGTGGCAGTG-
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
*
96837399 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
**
96837426 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGAT-ATTTGTGGCAGGGC
96837454 CACCAG
1 CACCAG
96837460 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 10 0.19
27 20 0.37
28 24 0.44
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:96837612 original size:28 final size:28
Alignment explanation
Indices: 96837581--96837656 Score: 152
Period size: 28 Copynumber: 2.7 Consensus size: 28
96837571 ATAAAGGTCG
96837581 TTTTGCATACATAGGGGTATTATGGTAA
1 TTTTGCATACATAGGGGTATTATGGTAA
96837609 TTTTGCATACATAGGGGTATTATGGTAA
1 TTTTGCATACATAGGGGTATTATGGTAA
96837637 TTTTGCATACATAGGGGTAT
1 TTTTGCATACATAGGGGTAT
96837657 AATAGTACAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.28, C:0.08, G:0.25, T:0.39
Consensus pattern (28 bp):
TTTTGCATACATAGGGGTATTATGGTAA
Found at i:96845330 original size:27 final size:27
Alignment explanation
Indices: 96845278--96845367 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
96845268 GTGATAGAGT
96845278 CACCAGATACAGATATTTTGTGGCAGTAC
1 CACCAGA-ACAGATA-TTTGTGGCAGTAC
* **
96845307 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTAC
96845334 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGTA-C
96845362 CACCAG
1 CACCAG
96845368 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTAC
Found at i:96845363 original size:28 final size:28
Alignment explanation
Indices: 96845278--96845367 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 28
96845268 GTGATAGAGT
*
96845278 CACCAGATACAGATATTTTGTGGCAGTA-C
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
* **
96845307 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCATAGC
96845334 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
96845362 CACCAG
1 CACCAG
96845368 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:96845521 original size:28 final size:28
Alignment explanation
Indices: 96845474--96845540 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
96845464 AAATTAACCC
*
96845474 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
96845502 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
96845530 TAGGGGTATAA
1 TAGGGGTATAA
96845541 TAGTACATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:96852850 original size:7 final size:7
Alignment explanation
Indices: 96852840--96852885 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
96852830 TGAATGAGAA
96852840 ATGAGGG
1 ATGAGGG
*
96852847 ATGAGTG
1 ATGAGGG
*
96852854 ATGAGTG
1 ATGAGGG
96852861 ATGAGGG
1 ATGAGGG
*
96852868 GTGAGGG
1 ATGAGGG
*
96852875 ATGAAGG
1 ATGAGGG
96852882 ATGA
1 ATGA
96852886 TTAGAAATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.30, C:0.00, G:0.50, T:0.20
Consensus pattern (7 bp):
ATGAGGG
Found at i:96852858 original size:21 final size:21
Alignment explanation
Indices: 96852833--96852878 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
96852823 AAGAGAATGA
*
96852833 ATGAGAAATGAGGGATGAGTG
1 ATGAGAAATGAGGGATGAGGG
** *
96852854 ATGAGTGATGAGGGGTGAGGG
1 ATGAGAAATGAGGGATGAGGG
96852875 ATGA
1 ATGA
96852879 AGGATGATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.48, T:0.20
Consensus pattern (21 bp):
ATGAGAAATGAGGGATGAGGG
Found at i:96854025 original size:14 final size:15
Alignment explanation
Indices: 96854006--96854062 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
96853996 AATCTTTAAG
96854006 GATATG-CAATCTTA
1 GATATGACAATCTTA
96854020 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
96854037 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
96854056 GATATGA
1 GATATGA
96854063 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:96854047 original size:36 final size:38
Alignment explanation
Indices: 96854006--96854084 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
96853996 AATCTTTAAG
96854006 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
96854042 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
96854082 GAT
1 GAT
96854085 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:96854053 original size:19 final size:19
Alignment explanation
Indices: 96854006--96854084 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
96853996 AATCTTTAAG
96854006 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
96854025 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
96854042 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
96854061 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
96854082 GAT
1 GAT
96854085 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:96860645 original size:8 final size:8
Alignment explanation
Indices: 96860614--96860664 Score: 59
Period size: 8 Copynumber: 6.1 Consensus size: 8
96860604 ATAAATATCT
96860614 TTATTAT-
1 TTATTATA
*
96860621 TTAATAATA
1 TT-ATTATA
96860630 TATATTATA
1 T-TATTATA
96860639 TTATTATA
1 TTATTATA
96860647 TTATTATA
1 TTATTATA
96860655 TTATATATA
1 TTAT-TATA
96860664 T
1 T
96860665 AGTAAAGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
7 2 0.05
8 23 0.61
9 12 0.32
10 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TTATTATA
Found at i:96860654 original size:23 final size:24
Alignment explanation
Indices: 96860585--96860664 Score: 85
Period size: 23 Copynumber: 3.4 Consensus size: 24
96860575 TTTAAGTTTA
*
96860585 ATATATATATTATTA-AATAATAA
1 ATATATATATTATTATAATAATAT
* *
96860608 ATATCTTTATTATT-TAATAATAT
1 ATATATATATTATTATAATAATAT
* *
96860631 ATAT-TATATTATTATATTATTAT
1 ATATATATATTATTATAATAATAT
96860654 ATTATATATAT
1 A-TATATATAT
96860665 AGTAAAGTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
22 8 0.17
23 31 0.66
24 3 0.06
25 5 0.11
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATATATATTATTATAATAATAT
Found at i:96861749 original size:21 final size:21
Alignment explanation
Indices: 96861725--96861794 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
96861715 TGAATTGTGT
*
96861725 ATTGATTGAAAAGTGGTTTGA
1 ATTGATTGAAAAGTGATTTGA
* * *
96861746 ATTGAATCGAAGTA-TGATTGTGT
1 ATTG-ATTGAA-AAGTGATT-TGA
*
96861769 ATTGATTGAAAAGTGCTTTGA
1 ATTGATTGAAAAGTGATTTGA
96861790 ATTGA
1 ATTGA
96861795 ATCGAAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
21 12 0.32
22 18 0.49
23 7 0.19
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.39
Consensus pattern (21 bp):
ATTGATTGAAAAGTGATTTGA
Found at i:96861768 original size:44 final size:44
Alignment explanation
Indices: 96861718--96861808 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
96861708 GAATATGTGA
*
96861718 ATTGTGTATTGATTGAAAAGTGGTTTGAATTGAATCGAAGTATG
1 ATTGTGTATTGATTGAAAAGTGCTTTGAATTGAATCGAAGTATG
96861762 ATTGTGTATTGATTGAAAAGTGCTTTGAATTGAATCGAAGTATG
1 ATTGTGTATTGATTGAAAAGTGCTTTGAATTGAATCGAAGTATG
96861806 ATT
1 ATT
96861809 ATATGTGAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.32, C:0.03, G:0.25, T:0.40
Consensus pattern (44 bp):
ATTGTGTATTGATTGAAAAGTGCTTTGAATTGAATCGAAGTATG
Found at i:96862077 original size:21 final size:21
Alignment explanation
Indices: 96862010--96862079 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
96862000 TTATCGGCTT
96862010 TGTCG-ATCAGGCACTTTATG
1 TGTCGTATCAGGCACTTTATG
* * **
96862030 TGTCGCATCAGGCACCTCGTG
1 TGTCGTATCAGGCACTTTATG
*
96862051 TGTCGTTTCAGGCACTTTATG
1 TGTCGTATCAGGCACTTTATG
96862072 TGTCGTAT
1 TGTCGTAT
96862080 ATTGCTTTTG
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
20 5 0.12
21 35 0.88
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.36
Consensus pattern (21 bp):
TGTCGTATCAGGCACTTTATG
Found at i:96865838 original size:14 final size:14
Alignment explanation
Indices: 96865819--96865847 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
96865809 TAATCAGTGC
96865819 ATGTTTATTCTTCT
1 ATGTTTATTCTTCT
96865833 ATGTTTATTCTTCT
1 ATGTTTATTCTTCT
96865847 A
1 A
96865848 AGATAGCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.14, G:0.07, T:0.62
Consensus pattern (14 bp):
ATGTTTATTCTTCT
Found at i:96867309 original size:14 final size:16
Alignment explanation
Indices: 96867283--96867322 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
96867273 TATAAGTAAA
*
96867283 ATAATAATA-ATTAA-
1 ATAATATTATATTAAT
96867297 ATAAT-TTATATTAAT
1 ATAATATTATATTAAT
96867312 ATAATATTATA
1 ATAATATTATA
96867323 AAGTAACTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 2 0.09
14 10 0.45
15 5 0.23
16 5 0.23
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAATATTATATTAAT
Found at i:96874123 original size:44 final size:45
Alignment explanation
Indices: 96874050--96874146 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 45
96874040 AACGGCTCGT
* * * *
96874050 GATTACACGTTATAGTATGTGGCAACCATTGGCATGATAGTCCAA
1 GATTACACGTTATAGTATATGGCAACCATTGACATGACAGCCCAA
* * *
96874095 GATTACACGTTGT-TTATATGGCAACCATTGACCTGACAGCCCAA
1 GATTACACGTTATAGTATATGGCAACCATTGACATGACAGCCCAA
96874139 GATTACAC
1 GATTACAC
96874147 ATATATGTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 33 0.73
45 12 0.27
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (45 bp):
GATTACACGTTATAGTATATGGCAACCATTGACATGACAGCCCAA
Found at i:96880821 original size:8 final size:8
Alignment explanation
Indices: 96880808--96880837 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
96880798 ACAAATGCCA
96880808 GCTTTTCG
1 GCTTTTCG
96880816 GCTTTTCG
1 GCTTTTCG
96880824 GCTTTTCG
1 GCTTTTCG
96880832 GCTTTT
1 GCTTTT
96880838 GTCGATCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.23, T:0.53
Consensus pattern (8 bp):
GCTTTTCG
Found at i:96882624 original size:15 final size:15
Alignment explanation
Indices: 96882587--96882615 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
96882577 TTTTTATATC
96882587 TAATAATAATAATTA
1 TAATAATAATAATTA
96882602 TAATAATAATAATT
1 TAATAATAATAATT
96882616 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:96883976 original size:25 final size:24
Alignment explanation
Indices: 96883937--96883995 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
96883927 TTATTTCATT
* * *
96883937 AAATAAAAAAATTT-AAAATATAA
1 AAATAAATATATTTAAAAACATAA
96883960 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
96883986 AAATAAATAT
1 AAATAAATAT
96883996 TAAAACAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 10 0.33
25 12 0.40
26 8 0.27
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:96884007 original size:22 final size:22
Alignment explanation
Indices: 96883966--96884024 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
96883956 ATAATAAATC
* *
96883966 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
96883986 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
96884008 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
96884025 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:96884101 original size:15 final size:16
Alignment explanation
Indices: 96884071--96884103 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
96884061 AAATAGTTAT
96884071 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
96884088 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
96884103 A
1 A
96884104 AATAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:96884448 original size:91 final size:92
Alignment explanation
Indices: 96884287--96884467 Score: 262
Period size: 91 Copynumber: 2.0 Consensus size: 92
96884277 GGGCCGGGCC
96884287 GCCCAGCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCCTTTTTTATC-
1 GCCCAGCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCCTTTTTTATCT
96884351 TTTTTTTTTATAATAGATATGTACATA
66 TTTTTTTTTATAATAGATATGTACATA
* * *
96884378 GCCCGGCCCATGATCAGCTTTAGGTACA-CCCCCGCGGGAGCCC-TCATGGGT-TTTTTTTATTT
1 GCCCAGCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCCTTTTTTA--T
* *
96884440 TTTATTTTTTTTCTAATAGATATGTACA
64 CTT-TTTTTTTTATAATAGATATGTACA
96884468 CAGACATGGG
Statistics
Matches: 81, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
88 7 0.09
89 8 0.10
90 16 0.20
91 27 0.33
92 23 0.28
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (92 bp):
GCCCAGCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCCTTTTTTATCT
TTTTTTTTTATAATAGATATGTACATA
Found at i:96884991 original size:24 final size:24
Alignment explanation
Indices: 96884959--96885005 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
96884949 CTCTTCACTT
96884959 TCATATTCTTTATAATATATAAAA
1 TCATATTCTTTATAATATATAAAA
96884983 TCATATTCTTTATAATATATAAA
1 TCATATTCTTTATAATATATAAA
96885006 GTACATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.47
Consensus pattern (24 bp):
TCATATTCTTTATAATATATAAAA
Found at i:96891987 original size:71 final size:71
Alignment explanation
Indices: 96891836--96891998 Score: 220
Period size: 71 Copynumber: 2.3 Consensus size: 71
96891826 AACCAAAGTG
* * *
96891836 CTACTGATACCTTGAAGATTTCTACCGAAACCAGTCAAGTTAGTAGCCAAAGTTCAACATCTCAT
1 CTACTGATACCTTGAAGACTTCTACCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAACATCCCAT
*
96891901 GCACTT
66 ACACTT
* * *
96891907 CTA-TCGATACCTTGAGGACTTCTATCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAACATCCCC
1 CTACT-GATACCTTGAAGACTTCTACCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAACATCCCA
96891971 TACACTT
65 TACACTT
* *
96891978 TTACTGATACTTTGATAGACT
1 CTACTGATACCTTGA-AGACT
96891999 CTGCCTATGT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
70 1 0.01
71 73 0.92
72 5 0.06
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (71 bp):
CTACTGATACCTTGAAGACTTCTACCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAACATCCCAT
ACACTT
Found at i:96896849 original size:49 final size:49
Alignment explanation
Indices: 96896793--96896892 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
96896783 CAGTACATCA
96896793 TATACCACATACAAGTATTCTCACATATTACTTGTGATGGTCACTAAAC
1 TATACCACATACAAGTATTCTCACATATTACTTGTGATGGTCACTAAAC
*
96896842 TATACCACATACAAGTATTCTTACATATTACTTGTGATGGTCACTAAAC
1 TATACCACATACAAGTATTCTCACATATTACTTGTGATGGTCACTAAAC
96896891 TA
1 TA
96896893 ACTATAAATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (49 bp):
TATACCACATACAAGTATTCTCACATATTACTTGTGATGGTCACTAAAC
Found at i:96910356 original size:17 final size:19
Alignment explanation
Indices: 96910330--96910377 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
96910320 AATATTTTTC
*
96910330 ATATAGTAAAATA-A-ATA
1 ATATAATAAAATATATATA
*
96910347 ATATAATAAAAATATATATC
1 ATATAAT-AAAATATATATA
96910367 ATATAATAAAA
1 ATATAATAAAA
96910378 ATTTTGAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 6 0.23
18 6 0.23
19 5 0.19
20 9 0.35
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (19 bp):
ATATAATAAAATATATATA
Found at i:96910570 original size:27 final size:27
Alignment explanation
Indices: 96910514--96910571 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
96910504 GAAGATGTAA
*
96910514 TATATAAAAAATGAAATATGAATACTAT
1 TATATAAAAAATGAAATAT-AATACCAT
96910542 TATATAAATAAA-GATAATAT-ATACCAT
1 TATATAAA-AAATGA-AATATAATACCAT
96910569 TAT
1 TAT
96910572 TAATATATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 9 0.33
28 10 0.37
29 8 0.30
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (27 bp):
TATATAAAAAATGAAATATAATACCAT
Found at i:96910625 original size:7 final size:7
Alignment explanation
Indices: 96910611--96910733 Score: 64
Period size: 7 Copynumber: 18.3 Consensus size: 7
96910601 AAATTTAATA
96910611 AATA-AT
1 AATATAT
96910617 AATATAT
1 AATATAT
*
96910624 AATTTAT
1 AATATAT
* *
96910631 AAAAAAT
1 AATATAT
96910638 AATATA-
1 AATATAT
** *
96910644 AGGAAAT
1 AATATAT
96910651 -ATATAT
1 AATATAT
*
96910657 AACA-A-
1 AATATAT
96910662 AATATAAT
1 AATAT-AT
*
96910670 AAAATAT
1 AATATAT
*
96910677 AATTTAT
1 AATATAT
*
96910684 AGATGAGAT
1 A-AT-ATAT
*
96910693 AA-AAAT
1 AATATAT
96910699 AATA--T
1 AATATAT
96910704 AATATAT
1 AATATAT
96910711 AATATAT
1 AATATAT
96910718 AATATAT
1 AATATAT
96910725 AATATAT
1 AATATAT
96910732 AA
1 AA
96910734 CTAATATTTA
Statistics
Matches: 86, Mismatches: 20, Indels: 21
0.68 0.16 0.17
Matches are distributed among these distances:
5 8 0.09
6 16 0.19
7 52 0.60
8 7 0.08
9 3 0.03
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (7 bp):
AATATAT
Found at i:96910638 original size:21 final size:22
Alignment explanation
Indices: 96910602--96910643 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
96910592 ACAGTTTACA
*
96910602 AATTTAATAAATAATAATATAT
1 AATTTAATAAAAAATAATATAT
96910624 AATTT-ATAAAAAATAATATA
1 AATTTAATAAAAAATAATATA
96910644 AGGAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
AATTTAATAAAAAATAATATAT
Found at i:96910652 original size:29 final size:28
Alignment explanation
Indices: 96910620--96910684 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 28
96910610 AAATAATAAT
*
96910620 ATATAATTTATAAAAAATAATATAAGGAA
1 ATATAATTTATAAAAAA-AATATAAGAAA
* *
96910649 ATAT-A--TAT-AACAAAATATAATAAA
1 ATATAATTTATAAAAAAAATATAAGAAA
96910673 ATATAATTTATA
1 ATATAATTTATA
96910685 GATGAGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
24 13 0.45
25 5 0.17
26 3 0.10
27 3 0.10
28 1 0.03
29 4 0.14
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (28 bp):
ATATAATTTATAAAAAAAATATAAGAAA
Found at i:96910763 original size:7 final size:7
Alignment explanation
Indices: 96910700--96910733 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
96910690 GATAAAAATA
96910700 ATATAAT
1 ATATAAT
96910707 ATATAAT
1 ATATAAT
96910714 ATATAAT
1 ATATAAT
96910721 ATATAAT
1 ATATAAT
96910728 ATATAA
1 ATATAA
96910734 CTAATATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATATAAT
Found at i:96911944 original size:25 final size:25
Alignment explanation
Indices: 96911911--96911969 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
96911901 CTTCATGAGT
*
96911911 TTTGGGTCTTGTAAGGGTTT-TTGGG
1 TTTGGGTCTTGTAA-GGTTTATCGGG
96911936 TTTGGGTCTTGTAAGGTTTATCGGG
1 TTTGGGTCTTGTAAGGTTTATCGGG
96911961 TTTGGGTCT
1 TTTGGGTCT
96911970 GCTGTAGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.16
25 27 0.84
ACGTcount: A:0.08, C:0.07, G:0.37, T:0.47
Consensus pattern (25 bp):
TTTGGGTCTTGTAAGGTTTATCGGG
Found at i:96914497 original size:10 final size:10
Alignment explanation
Indices: 96914484--96914531 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
96914474 CAAATCTGTC
96914484 AAAATTAATA
1 AAAATTAATA
96914494 AAAATTAATCA
1 AAAATTAAT-A
* *
96914505 AAATTTGATA
1 AAAATTAATA
*
96914515 TAAAATTAATT
1 -AAAATTAATA
96914526 AAAATT
1 AAAATT
96914532 CAACGTGTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 16 0.52
11 15 0.48
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (10 bp):
AAAATTAATA
Found at i:96914522 original size:22 final size:21
Alignment explanation
Indices: 96914482--96914531 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
96914472 CGCAAATCTG
96914482 TCAAAA-TTAATAAAAATTAA
1 TCAAAATTTAATAAAAATTAA
*
96914502 TCAAAATTTGATATAAAATTAA
1 TCAAAATTTAATA-AAAATTAA
*
96914524 TTAAAATT
1 TCAAAATT
96914532 CAACGTGTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 6 0.23
21 5 0.19
22 15 0.58
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (21 bp):
TCAAAATTTAATAAAAATTAA
Found at i:96920915 original size:25 final size:25
Alignment explanation
Indices: 96920881--96920931 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
96920871 GAATGAGTTG
96920881 GCTATTCTTACCAAACAAACACGCT
1 GCTATTCTTACCAAACAAACACGCT
* *
96920906 GCTATTCTTACTAACCAAACACGCT
1 GCTATTCTTACCAAACAAACACGCT
96920931 G
1 G
96920932 TTAATCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.31, G:0.10, T:0.25
Consensus pattern (25 bp):
GCTATTCTTACCAAACAAACACGCT
Found at i:96920939 original size:25 final size:25
Alignment explanation
Indices: 96920881--96920939 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
96920871 GAATGAGTTG
*
96920881 GCTATTCTTACCAAACAAACACGCT
1 GCTAATCTTACCAAACAAACACGCT
* * *
96920906 GCTATTCTTACTAACCAAACACGCT
1 GCTAATCTTACCAAACAAACACGCT
*
96920931 GTTAATCTT
1 GCTAATCTT
96920940 TTGCGAACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.31
Consensus pattern (25 bp):
GCTAATCTTACCAAACAAACACGCT
Found at i:96926892 original size:14 final size:13
Alignment explanation
Indices: 96926873--96926920 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
96926863 TTGAAACGTT
96926873 TTTATTTATTTATA
1 TTTATTTATTTA-A
*
96926887 TTTATTTA-ATAA
1 TTTATTTATTTAA
96926899 TTTATTTAATTTAA
1 TTTATTT-ATTTAA
*
96926913 TTGATTTA
1 TTTATTTA
96926921 AAATTTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 8 0.28
13 4 0.14
14 17 0.59
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (13 bp):
TTTATTTATTTAA
Found at i:96926919 original size:26 final size:25
Alignment explanation
Indices: 96926873--96926926 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
96926863 TTGAAACGTT
*
96926873 TTTATTTATTTATATTTATTTAATAA
1 TTTATTTATTTATATTGATTTAA-AA
96926899 TTTATTTAATTTA-ATTGATTTAAAA
1 TTTATTT-ATTTATATTGATTTAAAA
96926924 TTT
1 TTT
96926927 TTGAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 16 0.62
27 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
TTTATTTATTTATATTGATTTAAAA
Found at i:96928805 original size:20 final size:21
Alignment explanation
Indices: 96928782--96928836 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
96928772 TTTTTTTGAT
96928782 ATTTTTATAAAATTTAAT-AA
1 ATTTTTATAAAATTTAATAAA
* * *
96928802 ATTTTTTTACAATTTTATAAA
1 ATTTTTATAAAATTTAATAAA
* *
96928823 AATTTTAAAAAATT
1 ATTTTTATAAAATT
96928837 ATATATCCAG
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTTTTATAAAATTTAATAAA
Found at i:96928825 original size:31 final size:32
Alignment explanation
Indices: 96928770--96928836 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 32
96928760 AATTTTTTTT
* * *
96928770 AATTTTTTTGATATTTTTATAAAA-TTTAATA
1 AATTTTTTTGACAATTTTATAAAATTTTAAAA
96928801 AATTTTTTT-ACAATTTTATAAAAATTTTAAAA
1 AATTTTTTTGACAATTTTAT-AAAATTTTAAAA
96928833 AATT
1 AATT
96928837 ATATATCCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 8 0.26
31 13 0.42
32 10 0.32
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (32 bp):
AATTTTTTTGACAATTTTATAAAATTTTAAAA
Found at i:96930759 original size:21 final size:21
Alignment explanation
Indices: 96930735--96930789 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
96930725 CTTATAAATT
96930735 TTTATTATATATACATTTTAC
1 TTTATTATATATACATTTTAC
**
96930756 TTTA-TATATTATTTATTTTAC
1 TTTATTATA-TATACATTTTAC
*
96930777 TATATTTATATAT
1 TTTA-TTATATAT
96930790 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 17 0.61
22 3 0.11
23 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATTATATATACATTTTAC
Found at i:96934312 original size:17 final size:17
Alignment explanation
Indices: 96934269--96934301 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
96934259 TGGATTAATG
*
96934269 ATACATATAGATAATAC
1 ATACATAAAGATAATAC
96934286 ATACATAAAGATAATA
1 ATACATAAAGATAATA
96934302 ATATATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.27
Consensus pattern (17 bp):
ATACATAAAGATAATAC
Found at i:96934427 original size:16 final size:16
Alignment explanation
Indices: 96934406--96934436 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96934396 TATATATACA
96934406 TACATAGAAAAATATT
1 TACATAGAAAAATATT
*
96934422 TACATAGAATAATAT
1 TACATAGAAAAATAT
96934437 GAAATCAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (16 bp):
TACATAGAAAAATATT
Found at i:96936785 original size:49 final size:50
Alignment explanation
Indices: 96936732--96936831 Score: 141
Period size: 49 Copynumber: 2.0 Consensus size: 50
96936722 TAAAGAGATC
*
96936732 TGTACAAG-TGTAATCCATATAGAAATACACTT-TTCTATTTGATATTGAT
1 TGTACAAGTTG-AATCCATATAGAAATACACTTATTCTATTTGACATTGAT
* * *
96936781 TGTACAAGTTGAATCCGTATAGAACTTCACTTATTCTATTTGACATTGAT
1 TGTACAAGTTGAATCCATATAGAAATACACTTATTCTATTTGACATTGAT
96936831 T
1 T
96936832 AGAATAAAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
49 26 0.58
50 19 0.42
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (50 bp):
TGTACAAGTTGAATCCATATAGAAATACACTTATTCTATTTGACATTGAT
Found at i:96936988 original size:10 final size:9
Alignment explanation
Indices: 96936967--96937000 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
96936957 AATCTGTGTG
*
96936967 TTCTTATTT
1 TTCTTTTTT
96936976 TTCTTTCTTT
1 TTCTTT-TTT
96936986 TTCTTTTTT
1 TTCTTTTTT
96936995 TTCTTT
1 TTCTTT
96937001 GTGATCGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:96942682 original size:21 final size:21
Alignment explanation
Indices: 96942644--96942683 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
96942634 CTATTTACCA
* * *
96942644 GCCATTAGACCTATTCAAAAT
1 GCCATTAAACATACTCAAAAT
96942665 GCCATTAAACATACTCAAA
1 GCCATTAAACATACTCAAA
96942684 TCATGTTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.25
Consensus pattern (21 bp):
GCCATTAAACATACTCAAAAT
Found at i:96943479 original size:37 final size:37
Alignment explanation
Indices: 96943427--96943514 Score: 142
Period size: 37 Copynumber: 2.4 Consensus size: 37
96943417 ACACAAGTAG
*
96943427 TCCAACCGA-AACACGCCAAATGCTCATGAGAGCTAA
1 TCCAACCGATAACACGCCAAATGCTCATAAGAGCTAA
*
96943463 TCCAACCAATAACACGCCAAATGCTCATAAGAGCTAA
1 TCCAACCGATAACACGCCAAATGCTCATAAGAGCTAA
*
96943500 TCCAATCGATAACAC
1 TCCAACCGATAACAC
96943515 CCCTCGACAC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
36 8 0.17
37 39 0.83
ACGTcount: A:0.41, C:0.31, G:0.12, T:0.16
Consensus pattern (37 bp):
TCCAACCGATAACACGCCAAATGCTCATAAGAGCTAA
Found at i:96961696 original size:12 final size:12
Alignment explanation
Indices: 96961676--96961723 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
96961666 GTGGGAGTAA
96961676 GGTTCTATATTT
1 GGTTCTATATTT
*
96961688 GGTTTTATATGTT
1 GGTTCTATAT-TT
96961701 AAGGTTCTATATTT
1 --GGTTCTATATTT
*
96961715 GGTTTTATA
1 GGTTCTATA
96961724 GGTTAATGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 17 0.57
13 2 0.07
14 2 0.07
15 9 0.30
ACGTcount: A:0.21, C:0.04, G:0.19, T:0.56
Consensus pattern (12 bp):
GGTTCTATATTT
Found at i:96961703 original size:27 final size:27
Alignment explanation
Indices: 96961673--96961729 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
96961663 TTAGTGGGAG
*
96961673 TAAGGTTCTATATTTGGTTTTATATGT
1 TAAGGTTCTATATTTGGTTTTATAGGT
96961700 TAAGGTTCTATATTTGGTTTTATAGGT
1 TAAGGTTCTATATTTGGTTTTATAGGT
96961727 TAA
1 TAA
96961730 TGACATACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.04, G:0.19, T:0.53
Consensus pattern (27 bp):
TAAGGTTCTATATTTGGTTTTATAGGT
Found at i:96961711 original size:15 final size:14
Alignment explanation
Indices: 96961673--96961714 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 14
96961663 TTAGTGGGAG
96961673 TAAGGTTCTATATT
1 TAAGGTTCTATATT
*
96961687 T--GGTTTTATATGT
1 TAAGGTTCTATAT-T
96961700 TAAGGTTCTATATT
1 TAAGGTTCTATATT
96961714 T
1 T
96961715 GGTTTTATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 3 0.13
15 9 0.39
ACGTcount: A:0.24, C:0.05, G:0.17, T:0.55
Consensus pattern (14 bp):
TAAGGTTCTATATT
Found at i:96968614 original size:15 final size:15
Alignment explanation
Indices: 96968580--96968616 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
96968570 GCGATGTATA
*
96968580 ATGTGATACATGATT
1 ATGTGATACATGATC
*
96968595 GTGTGATACATGATC
1 ATGTGATACATGATC
96968610 ATGTGAT
1 ATGTGAT
96968617 GTGTGTGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTGATACATGATC
Found at i:96969060 original size:47 final size:46
Alignment explanation
Indices: 96969006--96969142 Score: 166
Period size: 47 Copynumber: 2.9 Consensus size: 46
96968996 TTTTATATGG
* *
96969006 CCTTTGTGGTGTATCCTGTATGTTGCATTTGTGGCGTACTCTGATAT
1 CCTTTGTGGTGTATTCTGTATGTTGC-TTTGTGGCGTACTCTGATAA
* *
96969053 CCTTTGTGGTGTATTTTGCATGTTGCCTTTGTGGCGTACTCTGATAA
1 CCTTTGTGGTGTATTCTGTATGTTG-CTTTGTGGCGTACTCTGATAA
* * * * *
96969100 CATTTGTGGCGTATTCTATATGTTATCTTTGTGGTGTACTCTG
1 CCTTTGTGGTGTATTCTGTATGTT-GCTTTGTGGCGTACTCTG
96969143 GTAGGCTTTG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
47 76 0.99
48 1 0.01
ACGTcount: A:0.13, C:0.16, G:0.25, T:0.46
Consensus pattern (46 bp):
CCTTTGTGGTGTATTCTGTATGTTGCTTTGTGGCGTACTCTGATAA
Found at i:96969061 original size:22 final size:22
Alignment explanation
Indices: 96969033--96969120 Score: 79
Period size: 22 Copynumber: 3.9 Consensus size: 22
96969023 GTATGTTGCA
96969033 TTTGTGGCGTACTCTGATATCC
1 TTTGTGGCGTACTCTGATATCC
* * * *
96969055 TTTGTGGTGTATTTTGCATGTTGCC
1 TTTGTGGCGTACTCTG-AT-AT-CC
* *
96969080 TTTGTGGCGTACTCTGATAACA
1 TTTGTGGCGTACTCTGATATCC
*
96969102 TTTGTGGCGTATTCT-ATAT
1 TTTGTGGCGTACTCTGATAT
96969121 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
21 3 0.06
22 28 0.55
23 2 0.04
24 3 0.06
25 15 0.29
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.45
Consensus pattern (22 bp):
TTTGTGGCGTACTCTGATATCC
Found at i:96969153 original size:47 final size:45
Alignment explanation
Indices: 96969007--96969165 Score: 138
Period size: 47 Copynumber: 3.4 Consensus size: 45
96968997 TTTATATGGC
* * * *
96969007 CTTTGTGGTGTATCCTGTATGTTGCATTTGTGGCGTACTCTGATATC
1 CTTTGTGGCGTATTCTGTATGTT-CCTTTGTGGCGTACTCTGATA-A
* * *
96969054 CTTTGTGGTGTATTTTGCATGTTGCCTTTGTGGCGTACTCTGATAA
1 CTTTGTGGCGTATTCTGTATGTT-CCTTTGTGGCGTACTCTGATAA
* * * * *
96969100 CATTTGTGGCGTATTCTATATGTTATCTTTGTGGTGTACTCTGGTAGG
1 C-TTTGTGGCGTATTCTGTATGTT-CCTTTGTGGCGTACTCTGATA-A
* *
96969148 CTTTGTGACTTATTCTGT
1 CTTTGTGGCGTATTCTGT
96969166 CTGGCCCTTA
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
46 1 0.01
47 91 0.98
48 1 0.01
ACGTcount: A:0.13, C:0.15, G:0.25, T:0.47
Consensus pattern (45 bp):
CTTTGTGGCGTATTCTGTATGTTCCTTTGTGGCGTACTCTGATAA
Found at i:96979548 original size:31 final size:31
Alignment explanation
Indices: 96979513--96979576 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
96979503 CCTTTTCATA
*
96979513 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACCGGGCCGAAGCCT
** *
96979544 TTTCATATTTCATATTACCGGGCTGAAGCCT
1 TTTCATATTTCATAACACCGGGCCGAAGCCT
96979575 TT
1 TT
96979577 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACCGGGCCGAAGCCT
Found at i:96979833 original size:26 final size:26
Alignment explanation
Indices: 96979798--96979869 Score: 101
Period size: 25 Copynumber: 2.8 Consensus size: 26
96979788 CTCTTTTAAT
* *
96979798 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCGGTA
*
96979824 AATTAGGGCATAAGCCC-TTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCGGTA
*
96979849 AACTGGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
96979870 GTACTTCCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 23 0.57
26 17 0.43
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (26 bp):
AACTAGGGCATAAGCCCTTTTCGGTA
Found at i:96979944 original size:20 final size:20
Alignment explanation
Indices: 96979919--96980005 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
96979909 TTATGAATAC
96979919 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
96979939 ATCATGTGCATGTCGTACAT
1 ATCATGTGCATATCATACAT
*
96979959 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
96979979 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
96979999 ATCATGT
1 ATCATGT
96980006 ATATCAAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 58 0.97
21 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:96979972 original size:11 final size:11
Alignment explanation
Indices: 96979919--96979994 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
96979909 TTATGAATAC
96979919 ATCATGTGCAT
1 ATCATGTGCAT
*
96979930 ATCA--TACAT
1 ATCATGTGCAT
96979939 ATCATGTGCAT
1 ATCATGTGCAT
* *
96979950 GTC--GTACAT
1 ATCATGTGCAT
96979959 ATCATGTGCAT
1 ATCATGTGCAT
96979970 ATCA--TGCAT
1 ATCATGTGCAT
96979979 ATCATGTGCAT
1 ATCATGTGCAT
96979990 ATCAT
1 ATCAT
96979995 ATCAATCATG
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:96980011 original size:9 final size:10
Alignment explanation
Indices: 96979919--96980011 Score: 72
Period size: 9 Copynumber: 9.4 Consensus size: 10
96979909 TTATGAATAC
96979919 ATCATGTGCAT
1 ATCATGT-CAT
*
96979930 ATCAT-ACAT
1 ATCATGTCAT
96979939 ATCATGTGCAT
1 ATCATGT-CAT
*
96979950 GTC--GTACAT
1 ATCATGT-CAT
96979959 ATCATGTGCAT
1 ATCATGT-CAT
96979970 ATCATG-CAT
1 ATCATGTCAT
96979979 ATCATGTGCAT
1 ATCATGT-CAT
*
96979990 ATCATATCA-
1 ATCATGTCAT
96979999 ATCATGT-AT
1 ATCATGTCAT
96980008 ATCA
1 ATCA
96980012 AAATCCCATG
Statistics
Matches: 67, Mismatches: 8, Indels: 16
0.74 0.09 0.18
Matches are distributed among these distances:
8 1 0.01
9 34 0.51
10 2 0.03
11 30 0.45
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:96987583 original size:24 final size:23
Alignment explanation
Indices: 96987538--96987596 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
96987528 ACTTTAGCCA
96987538 TTTTTTATTTTTATTAAAATTTATT
1 TTTTTTA-TTTTATTAAAATTT-TT
**
96987563 TTTTTTATTTTATTACTATTTTT
1 TTTTTTATTTTATTAAAATTTTT
* *
96987586 TCTTTAATTTT
1 TTTTTTATTTT
96987597 CTTCTAGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 11 0.37
24 12 0.40
25 7 0.23
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTATTTTATTAAAATTTTT
Found at i:96995098 original size:80 final size:82
Alignment explanation
Indices: 96994965--96995125 Score: 299
Period size: 80 Copynumber: 2.0 Consensus size: 82
96994955 TTCATTACAG
96994965 TATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTCCCAGTGATTCCTAGTGATGATTT
1 TATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTCCCAGTGATTCCTAGTGATGATTT
96995030 AAATC-T-TAAATCATT
66 AAATCTTGTAAATCATT
*
96995045 TATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTGATGATTT
1 TATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTCCCAGTGATTCCTAGTGATGATTT
96995110 AAATCTTGTAAATCAT
66 AAATCTTGTAAATCAT
96995126 GCTAAGTGTC
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
80 69 0.88
81 1 0.01
82 8 0.10
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (82 bp):
TATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTCCCAGTGATTCCTAGTGATGATTT
AAATCTTGTAAATCATT
Found at i:96997563 original size:18 final size:19
Alignment explanation
Indices: 96997540--96997575 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
96997530 ATTGTTTTCA
96997540 TACCTT-TAGGTATATCAC
1 TACCTTGTAGGTATATCAC
96997558 TACCTTGTAGGTATATCA
1 TACCTTGTAGGTATATCA
96997576 TTAATATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (19 bp):
TACCTTGTAGGTATATCAC
Found at i:96998638 original size:18 final size:18
Alignment explanation
Indices: 96998615--96998650 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
96998605 CCCTATTTAT
96998615 TACTGATTTATGCTTACA
1 TACTGATTTATGCTTACA
96998633 TACTGATTTATGCTTACA
1 TACTGATTTATGCTTACA
96998651 CTTGTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
TACTGATTTATGCTTACA
Found at i:96999902 original size:32 final size:32
Alignment explanation
Indices: 96999866--97000017 Score: 198
Period size: 32 Copynumber: 4.8 Consensus size: 32
96999856 ACTATGCTAG
96999866 TTTTTTATATGTAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* * *
96999898 TTTTTCATTTGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* * *
96999930 -TTTTTATATGTGAACCTAATGTATTATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* *
96999961 TTTATTATATGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* * *
96999993 TTTTTTAAACGTAAACCTAATGTAT
1 TTTTTTATATGTAAAACTAATGTAT
97000018 CATATTTTTT
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
31 25 0.25
32 75 0.75
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (32 bp):
TTTTTTATATGTAAAACTAATGTATGATCTAC
Found at i:96999974 original size:63 final size:64
Alignment explanation
Indices: 96999866--97000017 Score: 227
Period size: 63 Copynumber: 2.4 Consensus size: 64
96999856 ACTATGCTAG
* *
96999866 TTTTTTATATGTAAAACTAATGTATGATCTACTTTTTCATTTGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
* *
96999930 -TTTTTATATGTGAACCTAATGTATTATCTACTTTATT-ATATGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAACCTAATGTATGATCTACTTT-TTCATATGCAAAACTAATGTATGATCTAC
* *
96999993 TTTTTTAAACGTAAACCTAATGTAT
1 TTTTTTATATGTAAACCTAATGTAT
97000018 CATATTTTTT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
63 56 0.71
64 23 0.29
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (64 bp):
TTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
Found at i:97003566 original size:21 final size:21
Alignment explanation
Indices: 97003540--97003592 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
97003530 CGCTGTTTCT
*
97003540 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
97003561 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
97003582 AATCTCACCGC
1 AATCTCACCGC
97003593 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:97005701 original size:7 final size:6
Alignment explanation
Indices: 97005653--97005698 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
97005643 TTGCTTTTCC
* * * *
97005653 TTTTGT TTTTAT CTTTAT TTTTAT TTTTAT TTTTAC TTTCAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
97005699 CATAATTTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:97006589 original size:15 final size:15
Alignment explanation
Indices: 97006569--97006598 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97006559 TTAAGAATTT
97006569 CTCCCTTTTTATTGA
1 CTCCCTTTTTATTGA
97006584 CTCCCTTTTTATTGA
1 CTCCCTTTTTATTGA
97006599 GATTTGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.07, T:0.53
Consensus pattern (15 bp):
CTCCCTTTTTATTGA
Found at i:97008515 original size:4 final size:4
Alignment explanation
Indices: 97008506--97008542 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
97008496 TTGCCGGCCC
97008506 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
97008543 ACAAAAAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:97009974 original size:12 final size:12
Alignment explanation
Indices: 97009931--97010026 Score: 77
Period size: 12 Copynumber: 7.6 Consensus size: 12
97009921 TATTTATTAT
97009931 TTTTATTCATATA
1 TTTTATT-ATATA
*
97009944 TTATCCATTATA-A
1 TT-T-TATTATATA
* *
97009957 TATTATTATACA
1 TTTTATTATATA
*
97009969 TTTTATTTATAAA
1 TTTTA-TTATATA
97009982 TTTTATTATATA
1 TTTTATTATATA
97009994 TTATATATTATATA
1 TT-T-TATTATATA
*
97010008 TTTTACTATATA
1 TTTTATTATATA
*
97010020 TATTATT
1 TTTTATT
97010027 CTTTGCATTT
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
11 6 0.09
12 27 0.40
13 17 0.25
14 15 0.22
15 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.58
Consensus pattern (12 bp):
TTTTATTATATA
Found at i:97009997 original size:7 final size:7
Alignment explanation
Indices: 97009934--97010025 Score: 63
Period size: 7 Copynumber: 13.9 Consensus size: 7
97009924 TTATTATTTT
97009934 TATTCATA
1 TATT-ATA
*
97009942 TATTATC
1 TATTATA
*
97009949 CATTATA
1 TATTATA
97009956 -A-TAT-
1 TATTATA
97009960 TATTATA
1 TATTATA
* *
97009967 CATTTTA
1 TATTATA
97009974 T-TTATA
1 TATTATA
*
97009980 AATT-T-
1 TATTATA
97009985 TATTATA
1 TATTATA
97009992 TATTATA
1 TATTATA
97009999 TATTATA
1 TATTATA
*
97010006 TATTTTA
1 TATTATA
97010013 CTA-TATA
1 -TATTATA
97010020 TATTAT
1 TATTAT
97010026 TCTTTGCATT
Statistics
Matches: 65, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
5 7 0.11
6 12 0.18
7 40 0.62
8 6 0.09
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
TATTATA
Found at i:97010139 original size:21 final size:22
Alignment explanation
Indices: 97010115--97010163 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 22
97010105 TAAATAATAG
97010115 TATAT-ATATATTATCC-TTATT
1 TATATGATAT-TTATCCATTATT
97010136 TATATGATATTTATCCTATTATT
1 TATATGATATTTATCC-ATTATT
97010159 TATAT
1 TATAT
97010164 TTCATTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.44
22 4 0.16
23 10 0.40
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (22 bp):
TATATGATATTTATCCATTATT
Found at i:97022283 original size:44 final size:44
Alignment explanation
Indices: 97022220--97022758 Score: 686
Period size: 44 Copynumber: 12.2 Consensus size: 44
97022210 GTAGATCACC
* * ** *
97022220 GATAGCTGATTTGGAGTCTCTGTATTGTTAGAGAGCAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
97022264 GATAGCGGATTTGGCGTCTCTGTATTGACAGAGAGTAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * *
97022308 GAT-GACAGATTTGGCGTCTTTATATTGTCAGAGAGTAGATCGAA
1 GATAG-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * *
97022352 GATAACAGATTTGGCATCTCTGTGTTGACAGAGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
97022396 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
97022440 GATAGCAGATTTGGCGTCTCTGTACTGACAAAGAGTAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
97022484 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
** * * * * *
97022528 GATAATAGATTTTGTGTCTTTGTATTGACGGAGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
97022572 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
97022616 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
97022660 GATAGCAGATTTGGTGTCT-TAGTATTGACAAAGAGCAGATTGAA
1 GATAGCAGATTTGGCGTCTCT-GTATTGACAGAGAGCAGATCGAA
* * ** * ** *
97022704 AATAACAGATTTTACGTCTCTGTGATAGATGGGGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGT-ATTGACAGAGAGCAGATCGAA
97022749 GATAGCAGAT
1 GATAGCAGAT
97022759 CTGATATTTG
Statistics
Matches: 430, Mismatches: 60, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
43 2 0.00
44 404 0.94
45 24 0.06
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (44 bp):
GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
Found at i:97024552 original size:12 final size:12
Alignment explanation
Indices: 97024509--97024604 Score: 77
Period size: 12 Copynumber: 7.6 Consensus size: 12
97024499 TATATATTAT
97024509 TTTTATTCATATA
1 TTTTATT-ATATA
*
97024522 TTATCCATTATA-A
1 TT-T-TATTATATA
* *
97024535 TATTATTATACA
1 TTTTATTATATA
*
97024547 TTTTATTTATAAA
1 TTTTA-TTATATA
97024560 TTTTATTATATA
1 TTTTATTATATA
97024572 TTATATATTATATA
1 TT-T-TATTATATA
*
97024586 TTTTACTATATA
1 TTTTATTATATA
*
97024598 TATTATT
1 TTTTATT
97024605 CTTTGCATTT
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
11 6 0.09
12 27 0.40
13 17 0.25
14 15 0.22
15 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.58
Consensus pattern (12 bp):
TTTTATTATATA
Found at i:97024575 original size:7 final size:7
Alignment explanation
Indices: 97024512--97024603 Score: 63
Period size: 7 Copynumber: 13.9 Consensus size: 7
97024502 ATATTATTTT
97024512 TATTCATA
1 TATT-ATA
*
97024520 TATTATC
1 TATTATA
*
97024527 CATTATA
1 TATTATA
97024534 -A-TAT-
1 TATTATA
97024538 TATTATA
1 TATTATA
* *
97024545 CATTTTA
1 TATTATA
97024552 T-TTATA
1 TATTATA
*
97024558 AATT-T-
1 TATTATA
97024563 TATTATA
1 TATTATA
97024570 TATTATA
1 TATTATA
97024577 TATTATA
1 TATTATA
*
97024584 TATTTTA
1 TATTATA
97024591 CTA-TATA
1 -TATTATA
97024598 TATTAT
1 TATTAT
97024604 TCTTTGCATT
Statistics
Matches: 65, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
5 7 0.11
6 12 0.18
7 40 0.62
8 6 0.09
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
TATTATA
Found at i:97024642 original size:28 final size:27
Alignment explanation
Indices: 97024559--97024687 Score: 70
Period size: 26 Copynumber: 4.8 Consensus size: 27
97024549 TTATTTATAA
* *
97024559 ATTTTATTATATATTA-TA-TATTATAT
1 ATTTTATTATAAATTATTATTATT-TTT
* * * **
97024585 ATTTTACTATATA-TATTATTCTTTGC
1 ATTTTATTATAAATTATTATTATTTTT
97024611 ATTTTATTATAAATTATGTATTATTTTT
1 ATTTTATTATAAATTAT-TATTATTTTT
* * ** *
97024639 ATTTT-TCATTAATTATGTAAGATTTTAA
1 ATTTTATTATAAATTAT-TATTATTTT-T
*
97024667 ATTTT-TTTTAAATTATTATTA
1 ATTTTATTATAAATTATTATTA
97024688 AATAATAGTA
Statistics
Matches: 79, Mismatches: 19, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
25 2 0.03
26 26 0.33
27 26 0.33
28 25 0.32
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (27 bp):
ATTTTATTATAAATTATTATTATTTTT
Found at i:97024804 original size:14 final size:14
Alignment explanation
Indices: 97024774--97024823 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
97024764 ATTTTGTTAC
*
97024774 ATATTATATT-ATT
1 ATATTATATTCCTT
97024787 ATA-TATTATTCCTT
1 ATATTA-TATTCCTT
*
97024801 ATATTATCTTCCTT
1 ATATTATATTCCTT
97024815 ATATTATAT
1 ATATTATAT
97024824 ATATTATTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 2 0.06
13 7 0.23
14 20 0.65
15 2 0.06
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (14 bp):
ATATTATATTCCTT
Found at i:97027448 original size:21 final size:21
Alignment explanation
Indices: 97027422--97027473 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
97027412 TATATTATAG
97027422 CATATCATGTGCAT-CTCATAA
1 CATATCATGTGCATAC-CATAA
**
97027443 CATATCATGTGCATACCATGC
1 CATATCATGTGCATACCATAA
97027464 CATATCATGT
1 CATATCATGT
97027474 ATAACAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.33
Consensus pattern (21 bp):
CATATCATGTGCATACCATAA
Found at i:97041514 original size:47 final size:47
Alignment explanation
Indices: 97041310--97041521 Score: 160
Period size: 47 Copynumber: 4.4 Consensus size: 47
97041300 GCCACAATAT
* * * *
97041310 ATATACACATCTCATACATATC-TCACATTAGCCATTCGG-CTTCGTCACAT
1 ATATACACAT-TC--ACAT-TCATCACATTGGCCATTAGGCCTT-ATCACAC
* * * ***
97041360 ATATACAC-TTCCACGTTTATCACATTAGCCATTCTACCTTATCACAC
1 ATATACACATT-CACATTCATCACATTGGCCATTAGGCCTTATCACAC
* ** *
97041407 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATATACACATTCACATTCATCACATTGGCCATTAGGCCTTATCACAC
* ** * * *
97041454 ATATGCATGTTCACATTCATTACATTGGCCATTAGGCCTTATCTCAT
1 ATATACACATTCACATTCATCACATTGGCCATTAGGCCTTATCACAC
*
97041501 TTATACACATTCACATTCATC
1 ATATACACATTCACATTCATC
97041522 TCATAAAATC
Statistics
Matches: 136, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.01
47 119 0.88
48 6 0.04
49 2 0.01
50 8 0.06
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
ATATACACATTCACATTCATCACATTGGCCATTAGGCCTTATCACAC
Done.