Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 29 of 344
Found at i:10067591 original size:18 final size:18
Alignment explanation
Indices: 10067554--10067592 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
10067544 GTGTGCCCTA
*
10067554 CCCGTGTGGGCCCACAAG
1 CCCGTGTGGGCACACAAG
10067572 CCCGTGTGGGTCACAC-AG
1 CCCGTGTGGG-CACACAAG
10067590 CCC
1 CCC
10067593 AAATTAGCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.15, C:0.41, G:0.31, T:0.13
Consensus pattern (18 bp):
CCCGTGTGGGCACACAAG
Found at i:10078993 original size:10 final size:10
Alignment explanation
Indices: 10078978--10079002 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10078968 TTATGTTTTA
10078978 ATTATAATAT
1 ATTATAATAT
10078988 ATTATAATAT
1 ATTATAATAT
10078998 ATTAT
1 ATTAT
10079003 TATACATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTATAATAT
Found at i:10079257 original size:22 final size:23
Alignment explanation
Indices: 10079232--10079278 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
10079222 ATTTTTAGAC
*
10079232 ATGAGTTA-TGTTAAATTAATTG
1 ATGAGTTAGGGTTAAATTAATTG
10079254 ATGAGTTAGGGGTTAAATTAATTG
1 ATGAGTTA-GGGTTAAATTAATTG
10079278 A
1 A
10079279 ATTTCAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.36
24 14 0.64
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.40
Consensus pattern (23 bp):
ATGAGTTAGGGTTAAATTAATTG
Found at i:10083367 original size:14 final size:13
Alignment explanation
Indices: 10083329--10083377 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
10083319 AAAAAATATG
10083329 ATATTTAATAATA
1 ATATTTAATAATA
10083342 AT-TTTAA-AATA
1 ATATTTAATAATA
10083353 ATATTTAATATATA
1 ATATTTAATA-ATA
*
10083367 ATATATAATAA
1 ATATTTAATAA
10083378 CAATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:10083722 original size:21 final size:20
Alignment explanation
Indices: 10083675--10083738 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
10083665 ACTTTTGATA
*
10083675 ATAATAATATAGATAAAAAATAT
1 ATAATAATAT--A-AAAAAATAC
*
10083698 ATAATAGTATAAAAAAATGAC
1 ATAATAATATAAAAAAAT-AC
10083719 ATAATAATATAAAATAAATA
1 ATAATAATATAAAA-AAATA
10083739 TAATATATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.19
21 16 0.44
22 4 0.11
23 9 0.25
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (20 bp):
ATAATAATATAAAAAAATAC
Found at i:10083735 original size:13 final size:13
Alignment explanation
Indices: 10083719--10083836 Score: 56
Period size: 13 Copynumber: 9.3 Consensus size: 13
10083709 AAAAAATGAC
10083719 ATAATAATATAAA
1 ATAATAATATAAA
*
10083732 AT-A-AATATAAT
1 ATAATAATATAAA
10083743 AT-ATAATATGAAA
1 ATAATAATAT-AAA
* *
10083756 GT-AT-ATATGTAA
1 ATAATAATAT-AAA
*
10083768 A-AATAATATATAT
1 ATAATAATATA-AA
*
10083781 ATAAATAATAT-GA
1 AT-AATAATATAAA
10083794 ATAATAAATAATAAA
1 ATAAT-AAT-ATAAA
* *
10083809 ATAATTATATAAT
1 ATAATAATATAAA
10083822 ATAAT-ATA-AAA
1 ATAATAATATAAA
10083833 ATAA
1 ATAA
10083837 GATTAAAAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
11 16 0.20
12 21 0.26
13 27 0.33
14 4 0.05
15 14 0.17
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (13 bp):
ATAATAATATAAA
Found at i:10083776 original size:15 final size:15
Alignment explanation
Indices: 10083721--10083849 Score: 68
Period size: 16 Copynumber: 8.3 Consensus size: 15
10083711 AAAATGACAT
*
10083721 AATAATATAAAATAAA
1 AATAATAT-ATATAAA
*
10083737 TATAATATATAATATGAA
1 AATAATATAT-ATA--AA
* *
10083755 AGT-ATATATGTAAA
1 AATAATATATATAAA
*
10083769 AATAATATATATATA
1 AATAATATATATAAA
10083784 AATAATATGA-ATAATA
1 AATAATAT-ATATAA-A
*
10083800 AATAATA-AAATAATTA
1 AATAATATATATAA--A
*
10083816 TATAATATAATATAAA
1 AATAATAT-ATATAAA
* *
10083832 AATAAGAT-TAAAAA
1 AATAATATATATAAA
10083846 AATA
1 AATA
10083850 GACAAAAAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
14 14 0.16
15 25 0.28
16 36 0.40
17 6 0.07
18 8 0.09
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (15 bp):
AATAATATATATAAA
Found at i:10083796 original size:9 final size:9
Alignment explanation
Indices: 10083768--10083830 Score: 50
Period size: 8 Copynumber: 7.7 Consensus size: 9
10083758 ATATATGTAA
10083768 AAATAATAT
1 AAATAATAT
10083777 --AT-ATAT
1 AAATAATAT
10083783 AAATAATAT
1 AAATAATAT
*
10083792 GAAT-A-AT
1 AAATAATAT
10083799 AAATAATA-
1 AAATAATAT
10083807 AAATAAT-T
1 AAATAATAT
*
10083815 ATATAATAT
1 AAATAATAT
10083824 AATATAA
1 AA-ATAA
10083831 AAATAAGATT
Statistics
Matches: 42, Mismatches: 4, Indels: 15
0.69 0.07 0.25
Matches are distributed among these distances:
6 4 0.10
7 7 0.17
8 17 0.40
9 10 0.24
10 4 0.10
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
AAATAATAT
Found at i:10083827 original size:24 final size:23
Alignment explanation
Indices: 10083675--10083832 Score: 100
Period size: 23 Copynumber: 6.8 Consensus size: 23
10083665 ACTTTTGATA
*
10083675 ATAATAATATAGATAAAAAAT-AT
1 ATAATAATATA-ATATAAAATAAT
* * *
10083698 ATAATAGTATAA-A-AAAATGAC
1 ATAATAATATAATATAAAATAAT
*
10083719 ATAATAATATAAAATAAATATAAT
1 ATAATAATATAATATAAA-ATAAT
**
10083743 AT-ATAATATGAAAGTATATATGTAA-
1 ATAATAATAT--AA-TATA-AAATAAT
10083768 A-AATAATAT-ATATATAAATAAT
1 ATAATAATATAATATA-AAATAAT
10083790 ATGAATAATA-AATAATAAAATAAT
1 AT-AATAATATAAT-ATAAAATAAT
10083814 -TATATAATATAATATAAAA
1 ATA-ATAATATAATATAAAA
10083833 ATAAGATTAA
Statistics
Matches: 109, Mismatches: 10, Indels: 32
0.72 0.07 0.21
Matches are distributed among these distances:
20 5 0.05
21 22 0.20
22 5 0.05
23 33 0.30
24 24 0.22
25 13 0.12
26 6 0.06
27 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (23 bp):
ATAATAATATAATATAAAATAAT
Found at i:10083833 original size:24 final size:24
Alignment explanation
Indices: 10083675--10083836 Score: 96
Period size: 24 Copynumber: 7.0 Consensus size: 24
10083665 ACTTTTGATA
10083675 ATAATAATATAGATA-AAAAAT-AT
1 ATAATAATATA-ATATAAAAATAAT
* * *
10083698 ATAATAGTAT-A-A-AAAAATGAC
1 ATAATAATATAATATAAAAATAAT
* *
10083719 ATAATAATATAAAATAAATATAAT
1 ATAATAATATAATATAAAAATAAT
* **
10083743 AT-ATAATATGAAAGTATATATGTAA-
1 ATAATAATAT--AA-TATAAAAATAAT
*
10083768 A-AATAATAT-ATATATAAATAAT
1 ATAATAATATAATATAAAAATAAT
10083790 ATGAATAATA-AATA-ATAAAATAAT
1 AT-AATAATATAATATA-AAAATAAT
10083814 -TATATAATATAATATAAAAATAA
1 ATA-ATAATATAATATAAAAATAA
10083837 GATTAAAAAA
Statistics
Matches: 111, Mismatches: 12, Indels: 31
0.72 0.08 0.20
Matches are distributed among these distances:
20 7 0.06
21 20 0.18
22 4 0.04
23 25 0.23
24 36 0.32
25 11 0.10
26 8 0.07
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (24 bp):
ATAATAATATAATATAAAAATAAT
Found at i:10083835 original size:32 final size:31
Alignment explanation
Indices: 10083722--10083836 Score: 96
Period size: 32 Copynumber: 3.6 Consensus size: 31
10083712 AAATGACATA
* *
10083722 ATAATATAAAATAAATATAATATATAA-TAT
1 ATAATATAATATAAAAATAATATATAATTAT
* *
10083752 GA-AAGTATATATGTAAAAATAATATAT-ATATAA
1 -ATAA-TATA-ATATAAAAATAATATATAAT-TAT
10083785 ATAATATGAATAATAAATAATAA-A-ATAATTAT
1 ATAATAT-AAT-ATAAA-AATAATATATAATTAT
10083817 ATAATATAATATAAAAATAA
1 ATAATATAATATAAAAATAA
10083837 GATTAAAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
29 5 0.07
30 7 0.10
31 9 0.13
32 31 0.45
33 12 0.17
34 5 0.07
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (31 bp):
ATAATATAATATAAAAATAATATATAATTAT
Found at i:10083849 original size:77 final size:78
Alignment explanation
Indices: 10083675--10083846 Score: 184
Period size: 77 Copynumber: 2.3 Consensus size: 78
10083665 ACTTTTGATA
*
10083675 ATAATAATATAGA--TAAAAAAT-ATATAATAGTATAAAAAAATGACATAATAATATAAAATAAA
1 ATAAAAATATAGATGTAAAAAATAATATAATAGTATAAAAAAATGACATAATAATATAAAATAAA
10083737 TATAATATATAAT
66 TATAATATATAAT
* * * *
10083750 ATGAAAGTATATATGT-AAAAATAATAT-ATA-TATAAATAATATGA-ATAATAAATAATAAAAT
1 ATAAAAATATAGATGTAAAAAATAATATAATAGTATAAA-AAAATGACATAAT-AAT-ATAAAAT
*
10083811 AATTAT-ATAATATAAT
63 AAATATAAT-ATATAAT
10083827 ATAAAAATA-AGAT-TAAAAAA
1 ATAAAAATATAGATGTAAAAAA
10083847 ATAGACAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
75 21 0.26
76 28 0.35
77 31 0.39
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (78 bp):
ATAAAAATATAGATGTAAAAAATAATATAATAGTATAAAAAAATGACATAATAATATAAAATAAA
TATAATATATAAT
Found at i:10085943 original size:205 final size:206
Alignment explanation
Indices: 10085497--10086250 Score: 1176
Period size: 205 Copynumber: 3.7 Consensus size: 206
10085487 GCTTCTTTGG
* * *
10085497 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACA-TGAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACA-AGTGAA
* *
10085561 AGCCAAATCAGCTACGTCTTCGATTTGTTCCTTGTAAGCACAAGAATG-TCAAATCATCTTGGAT
65 AGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCT-AAATCATCTTGGAT
**
10085625 CTTGCTTCAGTGA-AATTATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAG
129 CTTGCTTCAGT-ATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAG
*
10085689 ATGCCAGACTTTGA
193 ATGCCAGACTTCGA
* * *
10085703 TTTGTTCTCTGACAATACAGAGATTCCAAATCATCTTAGATTTGCTTCATCGTAAACAAGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAA
*
10085768 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGATC-
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
10085832 TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATG
131 TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATG
10085897 CCAGACTTCGA
196 CCAGACTTCGA
* * *
10085908 TTTGCTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACACGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAA
* * * *
10085973 GCCAAATAAGCTATGTCTTCGATTCGCTTCTTGTAAGCACAAGGATGCTAAATCATCTTGGATC-
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
* * *
10086037 TGCTTCAATATAAACATCTAAAGGTGAGATCTGCTATGTATCTGCTCCCCATTGAAGTGGAGATG
131 TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATG
10086102 CCAGACTTCGA
196 CCAGACTTCGA
* *
10086113 TTTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAA
* * * * * *
10086178 GCCAAATCATCTATGTCTTTGGTTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTTGGATCT
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
10086243 TGCTTCAG
131 TGCTTCAG
10086251 CCAAATCTGC
Statistics
Matches: 510, Mismatches: 34, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
204 1 0.00
205 381 0.75
206 127 0.25
207 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (206 bp):
TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAA
GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATG
CCAGACTTCGA
Found at i:10087906 original size:47 final size:46
Alignment explanation
Indices: 10087832--10087985 Score: 245
Period size: 47 Copynumber: 3.3 Consensus size: 46
10087822 TCCTTCGGGA
*
10087832 CTTATCACATATATACACTTTCCCATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCG-CCATTAGGC
* *
10087879 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACA-TCGCCATTAGGC
*
10087926 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAGGC
10087973 CTTATCACATATA
1 CTTATCACATATA
10087986 CATATCTTGT
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
46 1 0.01
47 96 0.97
48 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (46 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGCCATTAGGC
Found at i:10092317 original size:43 final size:43
Alignment explanation
Indices: 10092270--10092353 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
10092260 GCATTAAGCT
* * * *
10092270 TGCTAGGCATGAAAGCCTGAATACATATCACCGGCATGAATCC
1 TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAATCC
*
10092313 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAT
1 TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAAT
10092354 GCTCTTCGGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.17
Consensus pattern (43 bp):
TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAATCC
Found at i:10092401 original size:40 final size:40
Alignment explanation
Indices: 10092346--10092658 Score: 402
Period size: 40 Copynumber: 7.9 Consensus size: 40
10092336 CACATCACCG
* * *
10092346 GCACGAATGCTCTTCGGGACTTAGCTCTGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * *
10092386 GCACGAATGCTCTTCGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* *
10092426 GCACGAATGCTCTTC-GGACTTAACCCAGATACAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * *
10092465 GCACGAATGCTCTTCGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
10092505 GCACGAATGCTCTTC-GGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * *
10092544 GCACGAATGTTCTTCGGGTCTTAACCC-GAGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGA-TATAACACTA
* *
10092584 GCACGAATGCTCTT-GGGACTTAACCCGGATATAGCA-TCC
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-A
* * *
10092623 GCACAAATGCCCTTCGGGACTTAGCCCGGATATAAC
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAAC
10092659 TCACTGAACT
Statistics
Matches: 236, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
39 100 0.42
40 136 0.58
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
Found at i:10092478 original size:79 final size:79
Alignment explanation
Indices: 10092341--10092658 Score: 467
Period size: 79 Copynumber: 4.0 Consensus size: 79
10092331 GAATACACAT
* * * *
10092341 CACCGGCACGAATGCTCTTCGGGACTTAGCTCTGATATAACACTAGCACGAATGCTCTTCGGGTC
1 CACCAGCACGAATGCTCTTC-GGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
10092406 TTAACCCGGGTATAA
65 TTAACCCGGGTATAA
* *
10092421 CACCAGCACGAATGCTCTTCGGACTTAACCCAGATACAACACTAGCACGAATGCTCTTCGGGTCT
1 CACCAGCACGAATGCTCTTCGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTCT
10092486 TAACCCGGGTATAA
66 TAACCCGGGTATAA
*
10092500 CACCAGCACGAATGCTCTTCGGACTTAACCCGGATATAACACTAGCACGAATGTTCTTCGGGTCT
1 CACCAGCACGAATGCTCTTCGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTCT
*
10092565 TAACCCGAGTATAA
66 TAACCCGGGTATAA
* * * * * *
10092579 CACCAGCACGAATGCTCTTGGGACTTAACCCGGATATAGCA-TCCGCACAAATGCCCTTCGGGAC
1 CACCAGCACGAATGCTCTTCGGACTTAACCCGGATATAACACT-AGCACGAATGCTCTTCGGGTC
* *
10092643 TTAGCCCGGATATAA
65 TTAACCCGGGTATAA
10092658 C
1 C
10092659 TCACTGAACT
Statistics
Matches: 218, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
78 1 0.00
79 198 0.91
80 19 0.09
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (79 bp):
CACCAGCACGAATGCTCTTCGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTCT
TAACCCGGGTATAA
Found at i:10113847 original size:11 final size:13
Alignment explanation
Indices: 10113824--10113872 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
10113814 AAAAAATATG
10113824 ATATTTAATAATA
1 ATATTTAATAATA
10113837 AT-TTTAA-AATA
1 ATATTTAATAATA
10113848 ATATTTAATAAATA
1 ATATTTAAT-AATA
*
10113862 ATATATAATAA
1 ATATTTAATAA
10113873 CAATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:10114198 original size:20 final size:19
Alignment explanation
Indices: 10114169--10114334 Score: 94
Period size: 20 Copynumber: 8.2 Consensus size: 19
10114159 AACTTTTGAT
10114169 AATA-ATAATATAGATAAAA
1 AATATATAATATA-ATAAAA
10114188 AATATATAATAGT-ATAAAA
1 AATATATAATA-TAATAAAA
*
10114207 AATGACATAATA-ATATAAAA
1 AAT-ATATAATATA-ATAAAA
10114227 TAA-ATATAATAT-ATAATATGA
1 -AATATATAATATAATAA-A--A
* *
10114248 AAGTATAT-ATGTAA-AAAT
1 AA-TATATAATATAATAAAA
*
10114266 AATATATAATATATATAAAT
1 AATATATAATATA-ATAAAA
10114286 AATATGAATAATAAATAATAAAA
1 AATAT--ATAAT--ATAATAAAA
10114309 TAATTATATAATATAATATAAA
1 -AA-TATATAATATAATA-AAA
10114331 AATA
1 AATA
10114335 AGATTAAAAA
Statistics
Matches: 118, Mismatches: 6, Indels: 45
0.70 0.04 0.27
Matches are distributed among these distances:
17 5 0.04
18 10 0.08
19 22 0.19
20 33 0.28
21 17 0.14
22 13 0.11
23 10 0.08
24 5 0.04
25 3 0.03
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.33
Consensus pattern (19 bp):
AATATATAATATAATAAAA
Found at i:10114206 original size:18 final size:17
Alignment explanation
Indices: 10114185--10114319 Score: 58
Period size: 19 Copynumber: 7.1 Consensus size: 17
10114175 AATATAGATA
10114185 AAAAATATATAATAGTAT
1 AAAAATATATAATA-TAT
*
10114203 AAAAAATGACATAATAATAT
1 -AAAAAT-ATATAAT-ATAT
*
10114223 AAAATAAATATAATATAT
1 AAAA-ATATATAATATAT
* *
10114241 AATATGAA-AGTATATATGTAA
1 AA-A--AATA-TATA-ATATAT
10114262 AAATAATATATAATATAT
1 AAA-AATATATAATATAT
*
10114280 ATAAATAATATGAATA-AT
1 AAAAAT-ATAT-AATATAT
*
10114298 AAATAATAAAATAATTATAT
1 AAA-AAT-ATATAA-TATAT
10114318 AA
1 AA
10114320 TATAATATAA
Statistics
Matches: 91, Mismatches: 11, Indels: 27
0.71 0.09 0.21
Matches are distributed among these distances:
17 3 0.03
18 22 0.24
19 37 0.41
20 21 0.23
21 8 0.09
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (17 bp):
AAAAATATATAATATAT
Found at i:10114242 original size:13 final size:13
Alignment explanation
Indices: 10114218--10114334 Score: 58
Period size: 13 Copynumber: 9.3 Consensus size: 13
10114208 ATGACATAAT
10114218 AATATAA-A-ATA
1 AATATAATATATA
10114229 AATATAATATAT-
1 AATATAATATATA
10114241 AATATGAA-AGTATA
1 AATAT-AATA-TATA
* * *
10114255 TATGTAA-AAATA
1 AATATAATATATA
10114267 ATATATAATATATA
1 A-ATATAATATATA
10114281 TAA-ATAATATGA-A
1 -AATATAATAT-ATA
10114294 TAATA-AATA-ATA
1 -AATATAATATATA
10114306 AA-ATAAT-TATA
1 AATATAATATATA
*
10114317 TAATATAATATAAA
1 -AATATAATATATA
10114331 AATA
1 AATA
10114335 AGATTAAAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 30
0.69 0.06 0.25
Matches are distributed among these distances:
10 1 0.01
11 16 0.19
12 13 0.16
13 39 0.47
14 13 0.16
15 1 0.01
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (13 bp):
AATATAATATATA
Found at i:10114278 original size:24 final size:22
Alignment explanation
Indices: 10114261--10114331 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 22
10114251 TATATATGTA
10114261 AAAATAATATATAATATAT-AT
1 AAAATAATATATAATATATAAT
*
10114282 -AAATAATATGAATAATAAATAAT
1 AAAATAATAT--ATAATATATAAT
10114305 AAAATAATTATATAATATA-ATAT
1 AAAATAA-TATATAATATATA-AT
10114328 AAAA
1 AAAA
10114332 ATAAGATTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
20 9 0.21
22 9 0.21
23 15 0.36
24 6 0.14
25 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (22 bp):
AAAATAATATATAATATATAAT
Found at i:10114299 original size:32 final size:31
Alignment explanation
Indices: 10114216--10114335 Score: 89
Period size: 32 Copynumber: 3.6 Consensus size: 31
10114206 AAATGACATA
* * *
10114216 ATAATATAAAATAAATATAATATATAATATGAA
1 ATAA-ATAATATAAAAATAATATATAATAT-AT
* *
10114249 AGTATAT-ATGTAAAAATAATATATAATATAT
1 A-TAAATAATATAAAAATAATATATAATATAT
* *
10114280 ATAAATAATATGAATAATAAATAATAAAATAATTAT
1 ATAAATAATAT-AAAAAT-AAT-ATATAAT-A-TAT
10114316 ATAATATAATATAAAAATAA
1 ATAA-ATAATATAAAAATAA
10114336 GATTAAAAAC
Statistics
Matches: 69, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
30 4 0.06
31 5 0.07
32 24 0.35
33 6 0.09
34 8 0.12
35 3 0.04
36 12 0.17
37 7 0.10
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (31 bp):
ATAAATAATATAAAAATAATATATAATATAT
Found at i:10119534 original size:28 final size:28
Alignment explanation
Indices: 10119494--10119700 Score: 362
Period size: 28 Copynumber: 7.4 Consensus size: 28
10119484 ATTGTACAGT
10119494 ACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10119522 ACTAAGTGTGCGAATTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
10119550 ACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10119578 ACTAAGTGTGCGAATTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
10119606 ACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10119634 ACTAAGTGTGCGAGTTTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10119662 ACTAAGTGTGCGAG-TTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10119689 ACTGAGTGTGCG
1 ACTAAGTGTGCG
10119701 GACTTAATAT
Statistics
Matches: 173, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.14
28 149 0.86
ACGTcount: A:0.27, C:0.11, G:0.28, T:0.35
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTGATTATGTAGC
Found at i:10119608 original size:84 final size:84
Alignment explanation
Indices: 10119466--10119700 Score: 355
Period size: 84 Copynumber: 2.8 Consensus size: 84
10119456 GAGATTGGCG
* * * * * *
10119466 CTAAGTGTGCGGGTTTAAATTGTACAGTACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGT
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGT
10119531 GCGAATTTGATTATGTAGCA
65 GCGAATTTGATTATGTAGCA
*
10119551 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGTG
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGTG
*
10119616 CGAGTTTGATTATGTAGCA
66 CGAATTTGATTATGTAGCA
* * *
10119635 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCG-AGTTGATTATATAGCACTGAGTGTG
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGTG
10119699 CG
66 CG
10119701 GACTTAATAT
Statistics
Matches: 138, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
83 24 0.17
84 99 0.72
85 15 0.11
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (84 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGTG
CGAATTTGATTATGTAGCA
Found at i:10127580 original size:28 final size:28
Alignment explanation
Indices: 10127540--10127746 Score: 353
Period size: 28 Copynumber: 7.4 Consensus size: 28
10127530 ATTGTACAGT
10127540 ACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10127568 ACTAAGTGTGCGAATTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10127596 ACTAAGTGTGCGAGTTTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10127624 ACTAAGTGTGCGAATTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
10127652 ACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10127680 ACTAAGTGTGCGAGTTTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10127708 ACTAAGTGTGCGAG-TTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
10127735 ACTGAGTGTGCG
1 ACTAAGTGTGCG
10127747 GACTTAATAT
Statistics
Matches: 171, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 24 0.14
28 147 0.86
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTGATTATGTAGC
Found at i:10127654 original size:84 final size:84
Alignment explanation
Indices: 10127512--10127746 Score: 364
Period size: 84 Copynumber: 2.8 Consensus size: 84
10127502 GAGATTGGCG
* * * * * *
10127512 CTAAGTGTGCGGGTTTAAATTGTACAGTACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGT
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGT
10127577 GCGAATTTGATTATGTAGCA
65 GCGAATTTGATTATGTAGCA
10127597 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGTG
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGTG
*
10127662 CGAGTTTGATTATGTAGCA
66 CGAATTTGATTATGTAGCA
* * *
10127681 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCG-AGTTGATTATATAGCACTGAGTGTG
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGTG
10127745 CG
66 CG
10127747 GACTTAATAT
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
83 24 0.17
84 101 0.72
85 15 0.11
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (84 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAATTTGATTATGTAGCACTAAGTGTG
CGAATTTGATTATGTAGCA
Found at i:10131999 original size:26 final size:27
Alignment explanation
Indices: 10131967--10132036 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
10131957 GCGGATACTC
10131967 CACAGCTCGTGTGAGCAAG-CCCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
* *
10131993 CATAGCTCGTGTGAGC-AGACTCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
*
10132019 CACAACTCGTGTGAGCAA
1 CACAGCTCGTGTGAGCAA
10132037 TTATGTAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.05
26 35 0.92
27 1 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (27 bp):
CACAGCTCGTGTGAGCAAGACCCATTT
Found at i:10132569 original size:13 final size:13
Alignment explanation
Indices: 10132551--10132575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10132541 TGAAAGGGAA
10132551 AGTAAGTAAATAG
1 AGTAAGTAAATAG
10132564 AGTAAGTAAATA
1 AGTAAGTAAATA
10132576 TGTGATGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.20, T:0.24
Consensus pattern (13 bp):
AGTAAGTAAATAG
Found at i:10137211 original size:27 final size:26
Alignment explanation
Indices: 10137181--10137234 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
10137171 AGGAATACCG
*
10137181 ATTTACCCCTGGAGAGTAAAATGACTA
1 ATTTACCCCTCGAGAGT-AAATGACTA
* *
10137208 ATTTACCCCTCGTGCGTAAATGACTA
1 ATTTACCCCTCGAGAGTAAATGACTA
10137234 A
1 A
10137235 CTTGTGTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (26 bp):
ATTTACCCCTCGAGAGTAAATGACTA
Found at i:10137958 original size:27 final size:26
Alignment explanation
Indices: 10137920--10137979 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
10137910 CCACATATAT
* *
10137920 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
10137946 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
10137973 ATATCTG
1 ATATCTG
10137980 GCAGCCTCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:10146905 original size:40 final size:40
Alignment explanation
Indices: 10146805--10147029 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 40
10146795 GCTCCTCGTT
* * ** *
10146805 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* *
10146845 C-AATGCCTTTGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
10146884 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
10146924 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * * * *
10146964 CGAATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCA
*
10147005 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
10147030 CAGCATTCAA
Statistics
Matches: 165, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.21
40 123 0.75
41 8 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:10153785 original size:40 final size:40
Alignment explanation
Indices: 10153685--10153909 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 40
10153675 GCTCCTCGTT
* * ** *
10153685 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* *
10153725 C-AATGCCTTTGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
10153764 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
10153804 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * * * *
10153844 CGAATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCA
*
10153885 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
10153910 CAGCATTCAA
Statistics
Matches: 165, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.21
40 123 0.75
41 8 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:10157384 original size:22 final size:22
Alignment explanation
Indices: 10157357--10157420 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
10157347 ATTATTTATT
10157357 TAATTATAATTAAATAATTAAA
1 TAATTATAATTAAATAATTAAA
* *
10157379 TAATTAAATATTTGAA-AATTAAA
1 TAATT--ATAATTAAATAATTAAA
10157402 -AATTA-AATTAAATTAATTA
1 TAATTATAATTAAA-TAATTA
10157421 GTCATTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
19 5 0.15
20 1 0.03
21 5 0.15
22 9 0.26
23 7 0.21
24 7 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
TAATTATAATTAAATAATTAAA
Found at i:10157405 original size:7 final size:8
Alignment explanation
Indices: 10157362--10157409 Score: 64
Period size: 8 Copynumber: 6.2 Consensus size: 8
10157352 TTATTTAATT
10157362 ATAATTAA
1 ATAATTAA
10157370 ATAATTAA
1 ATAATTAA
10157378 ATAATTAA
1 ATAATTAA
* *
10157386 ATATTTGA
1 ATAATTAA
10157394 A-AATTAA
1 ATAATTAA
10157401 A-AATTAA
1 ATAATTAA
10157408 AT
1 AT
10157410 TAAATTAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 12 0.34
8 23 0.66
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (8 bp):
ATAATTAA
Found at i:10167559 original size:20 final size:19
Alignment explanation
Indices: 10167508--10167560 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
10167498 CAAATTTGAT
10167508 TTAAATAATTA-AAAAATA
1 TTAAATAATTATAAAAATA
10167526 TTAAATTTAATTATAAAAATA
1 TTAAA--TAATTATAAAAATA
*
10167547 TATAAATATTTATA
1 T-TAAATAATTATA
10167561 TTTAATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.17
20 13 0.43
21 8 0.27
22 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TTAAATAATTATAAAAATA
Found at i:10168325 original size:23 final size:23
Alignment explanation
Indices: 10168295--10168338 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
10168285 ATTTGCAATT
10168295 AGAAATTGAGCAGTGCCGGAATC
1 AGAAATTGAGCAGTGCCGGAATC
*
10168318 AGAAATTGAGCAGTGTCGGAA
1 AGAAATTGAGCAGTGCCGGAA
10168339 ATAGTGCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.18
Consensus pattern (23 bp):
AGAAATTGAGCAGTGCCGGAATC
Found at i:10173606 original size:30 final size:30
Alignment explanation
Indices: 10173570--10173627 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
10173560 CACGGTCTAG
10173570 CACATGGGCGTGTGGCAAGCCCGTGTGGCT
1 CACATGGGCGTGTGGCAAGCCCGTGTGGCT
* *
10173600 CACATGGGCGTGTGGCCAGCTCGTGTGG
1 CACATGGGCGTGTGGCAAGCCCGTGTGG
10173628 AAATGCCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.26, G:0.41, T:0.21
Consensus pattern (30 bp):
CACATGGGCGTGTGGCAAGCCCGTGTGGCT
Found at i:10175502 original size:22 final size:22
Alignment explanation
Indices: 10175477--10175521 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
10175467 AAATAAAATT
10175477 AAAAAGAA-AGATAAAAATAATA
1 AAAAAGAATA-ATAAAAATAATA
* *
10175499 AAAAATAATAATAATAATAATA
1 AAAAAGAATAATAAAAATAATA
10175521 A
1 A
10175522 TAAACTCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (22 bp):
AAAAAGAATAATAAAAATAATA
Found at i:10175508 original size:3 final size:3
Alignment explanation
Indices: 10175487--10175524 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
10175477 AAAAAGAAAG
*
10175487 ATA AAA ATA ATA A-A A-A ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10175525 ACTCAATGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:10175598 original size:22 final size:22
Alignment explanation
Indices: 10175571--10175620 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
10175561 ATGATAATAG
*
10175571 TAAAAAAATACGAA-AGAAAAA
1 TAAAAAAATACAAATAGAAAAA
10175592 TGAAAAAAATACAAATAGAAAAA
1 T-AAAAAAATACAAATAGAAAAA
10175615 TAAAAA
1 TAAAAA
10175621 TAAAAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 17 0.65
23 8 0.31
ACGTcount: A:0.76, C:0.04, G:0.08, T:0.12
Consensus pattern (22 bp):
TAAAAAAATACAAATAGAAAAA
Found at i:10175657 original size:15 final size:16
Alignment explanation
Indices: 10175637--10175674 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
10175627 TAATAAACGT
10175637 ATATAAAAAATT-AAA
1 ATATAAAAAATTAAAA
10175652 ATATAAAAAAATTAAAA
1 ATAT-AAAAAATTAAAA
10175669 ATATAA
1 ATATAA
10175675 GTATGAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.19
16 10 0.48
17 7 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
ATATAAAAAATTAAAA
Found at i:10175661 original size:17 final size:16
Alignment explanation
Indices: 10175610--10175674 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
10175600 ATACAAATAG
10175610 AAAAATAAAA-ATAAA
1 AAAAATAAAATATAAA
* *
10175625 AATAATAAACGTATATAA
1 AAAAATAAA-ATATA-AA
*
10175643 AAAATTAAAATATAAA
1 AAAAATAAAATATAAA
*
10175659 AAAATTAAAAATATAA
1 AAAAAT-AAAATATAA
10175675 GTATGAGAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
15 8 0.20
16 8 0.20
17 16 0.39
18 9 0.22
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (16 bp):
AAAAATAAAATATAAA
Found at i:10180134 original size:30 final size:30
Alignment explanation
Indices: 10180100--10180156 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
10180090 ATAGACTGGC
* *
10180100 ACATGGGCATGTGGCCAGCCAGTGTGGCTT
1 ACATGGGCATCTCGCCAGCCAGTGTGGCTT
* *
10180130 ACATGGGCGTCTCGCCAGCCCGTGTGG
1 ACATGGGCATCTCGCCAGCCAGTGTGG
10180157 AAATGCCCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (30 bp):
ACATGGGCATCTCGCCAGCCAGTGTGGCTT
Found at i:10190822 original size:37 final size:37
Alignment explanation
Indices: 10190722--10190824 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
10190712 CGAATAGTCC
* *
10190722 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
10190759 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
10190796 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
10190825 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:10191023 original size:48 final size:48
Alignment explanation
Indices: 10190965--10191291 Score: 609
Period size: 48 Copynumber: 6.8 Consensus size: 48
10190955 ATATACACAC
*
10190965 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
10191013 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
10191061 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
10191109 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
10191157 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
10191205 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
10191253 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
10191292 TACACATATA
Statistics
Matches: 274, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 274 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:10197060 original size:46 final size:48
Alignment explanation
Indices: 10196988--10197090 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
10196978 GACAGGACAG
* * * *
10196988 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
10197034 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
10197082 GACAGGAAT
1 GACAGGAAT
10197091 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:10203510 original size:13 final size:13
Alignment explanation
Indices: 10203492--10203520 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
10203482 CGTTGTTTAT
10203492 TAAACTAATTAAC
1 TAAACTAATTAAC
10203505 TAAACTAATTAAC
1 TAAACTAATTAAC
10203518 TAA
1 TAA
10203521 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:10213394 original size:5 final size:5
Alignment explanation
Indices: 10213353--10213437 Score: 63
Period size: 5 Copynumber: 16.8 Consensus size: 5
10213343 CCTCCTATCT
10213353 TTTTA TTCTTA TTTT- TTTCTA TTTTA -TTTA TTCTTA TTTTA TTTT-
1 TTTTA TT-TTA TTTTA TTT-TA TTTTA TTTTA TT-TTA TTTTA TTTTA
* *
10213398 TTTAA TTTCTA TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 TTTTA TTT-TA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
10213438 GAAAGACATA
Statistics
Matches: 65, Mismatches: 4, Indels: 22
0.71 0.04 0.24
Matches are distributed among these distances:
3 3 0.05
4 10 0.15
5 27 0.42
6 25 0.38
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:10213435 original size:25 final size:24
Alignment explanation
Indices: 10213355--10213437 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 24
10213345 TCCTATCTTT
10213355 TTATTCTTATTTT-TTTCTATTTTA
1 TTATTCTTATTTTATTTC-ATTTTA
10213379 TTTATTCTTATTTTATTT--TTTTA
1 -TTATTCTTATTTTATTTCATTTTA
*
10213402 AT-TTC-TATTTTCATTTCAATTTTA
1 TTATTCTTATTTT-ATTTC-ATTTTA
10213426 TTATT-TTATTTT
1 TTATTCTTATTTT
10213438 GAAAGACATA
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
20 6 0.12
21 7 0.14
22 1 0.02
23 5 0.10
24 6 0.12
25 21 0.43
26 3 0.06
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.73
Consensus pattern (24 bp):
TTATTCTTATTTTATTTCATTTTA
Found at i:10227131 original size:22 final size:22
Alignment explanation
Indices: 10227106--10227153 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
10227096 AACGCATCCA
10227106 AATCCAACATTTTAAAACCAAC
1 AATCCAACATTTTAAAACCAAC
10227128 AATCCAACATTTTAAAACCAAC
1 AATCCAACATTTTAAAACCAAC
10227150 AATC
1 AATC
10227154 TAGAGTGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (22 bp):
AATCCAACATTTTAAAACCAAC
Found at i:10246163 original size:549 final size:555
Alignment explanation
Indices: 10245084--10246179 Score: 1720
Period size: 549 Copynumber: 2.0 Consensus size: 555
10245074 AAAACCCAAA
*
10245084 ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCGGCTTCTGAGATGGAC
1 ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCAGCTTCTGAGATGGAC
*
10245149 CAATCAGCTTTCCTTGAGTAATTCCTTGCCTCCTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
66 CAACCAGCTTTCCTTGAGTAATTCCTTGCCTCCTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
* *
10245214 AAGTGTTTAAATAGGTTTCAGAATGCCTAAGAGCCCTCAAAATTGGCCTTTTCTGAATAGAGTTA
131 AAGTGTTTAAATAGGTTTCAGAATGCATAAGAGCCCTCAAAATTGGCCTTTTCCGAATAGAGTTA
** ** * *
10245279 TACTTGGGCTCGGCAGGGACACGCCCATGTGCGATTACTCTGGCCCGTGGTCAAGGCTGTTGAAC
196 TACTTGGGCTCGGCAGGGACACGCCCATGTAAGATTACTCCAGCCCGTGGTCAAGGCTATTAAAC
* * * **
10245344 AGGCACGGGCATGTGGTCTACCCGTGTAAGTCATGCTTTGATCCTACCAAATGGACACGACCGTG
261 AGGAACGGGCATATAGTCTACCCGTGTAAGTCATGCTTCAATCCTACC--AT-G--AC-A-C-TG
* *
10245409 TGACACGCCCGTGTGAGGAAGTCCAGGTCGTGTTGATTTCCCATGTGGGTCCATTTTCTATGTTT
318 TGACACGCCCGTGTGAGGAAGTCCAGGTCGTGTTGATTTCCCATGTGGGTCAATTTTCTATATTT
* * *
10245474 TCGGCCTGTTTCTCGCTCTTTGCACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGG
383 TCGGCCTATTTCTCACTCTTTACACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGG
* *
10245539 ATTAGGAGCATTGAATTCACCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATAGGATA
448 ATTAGAAGCATTGAATTCACCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATAGGACA
10245604 AAAATATGTATAAATTACGGTTTATCAGTCTACAAACCAAGGT
513 AAAATATGTATAAATTACGGTTTATCAGTCTACAAACCAAGGT
10245647 ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCAGCTTCTGAGATGGAC
1 ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCAGCTTCTGAGATGGAC
*
10245712 CAACCAGCTTTCCTTGAGTAATTCCTTGCCTCTTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
66 CAACCAGCTTTCCTTGAGTAATTCCTTGCCTCCTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
* * * *
10245777 AGGTGTTTAAATAGGTTTTAGAATGCATAAGAGCCCTTAAAATTGGCCTTTTCCG-ATAGGGTTA
131 AAGTGTTTAAATAGGTTTCAGAATGCATAAGAGCCCTCAAAATTGGCCTTTTCCGAATAGAGTTA
* *
10245841 TACTTGGGCTCGGTAGGGACACGCCCATGTAAGATTACTCCAGCCCGTGGTCAAGGCTATTAAAT
196 TACTTGGGCTCGGCAGGGACACGCCCATGTAAGATTACTCCAGCCCGTGGTCAAGGCTATTAAAC
* * *
10245906 AGGAACGGGCGTATAGTCTACTCGTGTAAGTCATGCTTCAATCCTGCC-T-A-A-TG-GACACGC
261 AGGAACGGGCATATAGTCTACCCGTGTAAGTCATGCTTCAATCCTACCATGACACTGTGACACGC
* *
10245966 CCGTGTGAGGAAGTCCAGG-CTGTGTTGATTTCTCATGTGGGTCAATTTTCTCTATTTTCGGCCT
326 CCGTGTGAGGAAGTCCAGGTC-GTGTTGATTTCCCATGTGGGTCAATTTTCTATATTTTCGGCCT
*
10246030 ATTTCTCACTTTTTACACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGGATTAGAA
390 ATTTCTCACTCTTTACACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGGATTAGAA
* *
10246095 GCATTGAATTCGCCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATGGGACAAAAATAT
455 GCATTGAATTCACCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATAGGACAAAAATAT
*
10246160 GTATAAATTATGGTTTATCA
520 GTATAAATTACGGTTTATCA
10246180 AATACCCCCA
Statistics
Matches: 494, Mismatches: 38, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
548 1 0.00
549 206 0.42
550 2 0.00
553 1 0.00
555 1 0.00
559 1 0.00
562 105 0.21
563 177 0.36
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (555 bp):
ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCAGCTTCTGAGATGGAC
CAACCAGCTTTCCTTGAGTAATTCCTTGCCTCCTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
AAGTGTTTAAATAGGTTTCAGAATGCATAAGAGCCCTCAAAATTGGCCTTTTCCGAATAGAGTTA
TACTTGGGCTCGGCAGGGACACGCCCATGTAAGATTACTCCAGCCCGTGGTCAAGGCTATTAAAC
AGGAACGGGCATATAGTCTACCCGTGTAAGTCATGCTTCAATCCTACCATGACACTGTGACACGC
CCGTGTGAGGAAGTCCAGGTCGTGTTGATTTCCCATGTGGGTCAATTTTCTATATTTTCGGCCTA
TTTCTCACTCTTTACACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGGATTAGAAG
CATTGAATTCACCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATAGGACAAAAATATG
TATAAATTACGGTTTATCAGTCTACAAACCAAGGT
Found at i:10266597 original size:79 final size:81
Alignment explanation
Indices: 10266455--10266637 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
10266445 TACTCATTCA
* * *
10266455 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGCACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCAGCACTTAACCCGGA
* *
10266519 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
**
10266535 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCAG-ATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCAGCA-CTTAACCCGG
* *
10266597 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
10266614 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
10266638 CATCATTCTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCAGCACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:10266637 original size:40 final size:40
Alignment explanation
Indices: 10266453--10266637 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
10266443 GCTACTCATT
* *
10266453 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
10266493 CAAATGCCTTCGGCACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
10266533 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
10266572 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
10266613 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
10266638 CATCATTCTA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 78 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:10276992 original size:42 final size:42
Alignment explanation
Indices: 10276939--10277068 Score: 233
Period size: 42 Copynumber: 3.1 Consensus size: 42
10276929 CTAAGTCTGG
* *
10276939 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
10276981 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
10277023 ATATATTACCAGCACGATGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
10277065 ATAT
1 ATAT
10277069 TATATCGAGA
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:10284678 original size:42 final size:42
Alignment explanation
Indices: 10284616--10284745 Score: 215
Period size: 42 Copynumber: 3.1 Consensus size: 42
10284606 CCAAGTCTGC
* * *
10284616 ATATAGTACTAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
10284658 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
10284700 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGAATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
10284742 ATAT
1 ATAT
10284746 TATATCGAGA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:10290816 original size:46 final size:46
Alignment explanation
Indices: 10290671--10290825 Score: 165
Period size: 46 Copynumber: 3.4 Consensus size: 46
10290661 TCCGAACTCT
* * *
10290671 TTGAGTCCG-GTTCACTTATGGATGCAAATGCCCGAACTCGTCGAG
1 TTGAGTCCGAGTTCACTCATGGATGCAAATGCTCGAACTCGTTGAG
* * * *
10290716 TTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCATCCGAACTCATTGAG
1 TTGAGTCCGAGTTCACTCATGGATGCAA--ATGC-T-CGAACTCGTTGAG
* *
10290763 TTCAGTCCGAGTTCACTCATGGATGCAAATGCTCGAGCTCGTTGAG
1 TTGAGTCCGAGTTCACTCATGGATGCAAATGCTCGAACTCGTTGAG
10290809 TTGAGTCCGAGTTCACT
1 TTGAGTCCGAGTTCACT
10290826 TATTGGCGGG
Statistics
Matches: 89, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
43 6 0.07
45 14 0.16
46 32 0.36
47 26 0.29
48 5 0.06
50 6 0.07
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (46 bp):
TTGAGTCCGAGTTCACTCATGGATGCAAATGCTCGAACTCGTTGAG
Found at i:10308597 original size:22 final size:20
Alignment explanation
Indices: 10308565--10308606 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
10308555 TCATTGTTGA
*
10308565 GAAATTGATGAATTAGGCTT
1 GAAATTGATGAATTAAGCTT
10308585 GAAATTGATATGAATTAAGCTT
1 GAAATTG--ATGAATTAAGCTT
10308607 AGATCATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (20 bp):
GAAATTGATGAATTAAGCTT
Found at i:10309228 original size:18 final size:17
Alignment explanation
Indices: 10309201--10309234 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
10309191 GATATGAGAA
*
10309201 AATTGTGAATTGATGATG
1 AATTGAGAA-TGATGATG
10309219 AATTGAGAATGATGAT
1 AATTGAGAATGATGAT
10309235 ATGTGAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.35
Consensus pattern (17 bp):
AATTGAGAATGATGATG
Found at i:10311045 original size:13 final size:13
Alignment explanation
Indices: 10311027--10311054 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10311017 GCTCGACAGG
10311027 GACACGCCCGTGT
1 GACACGCCCGTGT
10311040 GACACGCCCGTGT
1 GACACGCCCGTGT
10311053 GA
1 GA
10311055 AGAGGTCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:10314468 original size:42 final size:42
Alignment explanation
Indices: 10314401--10314520 Score: 102
Period size: 42 Copynumber: 2.8 Consensus size: 42
10314391 AGTTTATGTC
*
10314401 TAAGACCATATCTGAGGCATGGCATC-AGTATGAGACTTCTTG
1 TAAGACCATATCTGAGGCATGGCATCGA-TATGAGACTTCGTG
* * * *
10314443 TAAGACCATATCT-AGGATATTGCATCGATATGATATTTCGTG
1 TAAGACCATATCTGAGG-CATGGCATCGATATGAGACTTCGTG
* * * *
10314485 TAACACCATAACTG-GGCTATTGGCATAGATACGAGA
1 TAAGACCATATCTGAGGC-A-TGGCATCGATATGAGA
10314521 TAACATGTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
41 3 0.05
42 45 0.74
43 13 0.21
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGAGGCATGGCATCGATATGAGACTTCGTG
Found at i:10318433 original size:23 final size:23
Alignment explanation
Indices: 10318388--10318461 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 23
10318378 CCTAGGTAAT
*
10318388 ATGTGTGAAA-C--TTATA-AAA
1 ATGTGTGAAACCTGTTATACAAC
* * *
10318407 ATGTATGAACCCTGTTATACTAC
1 ATGTGTGAAACCTGTTATACAAC
**
10318430 ATGTGCAAAACCTGTTATACAAC
1 ATGTGTGAAACCTGTTATACAAC
10318453 ATGTGTGAA
1 ATGTGTGAA
10318462 TCTTGTTTTG
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
19 8 0.20
20 1 0.03
22 5 0.12
23 26 0.65
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (23 bp):
ATGTGTGAAACCTGTTATACAAC
Found at i:10318532 original size:17 final size:17
Alignment explanation
Indices: 10318510--10318544 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10318500 CGAACCCTTA
10318510 ACCATGGGCGAACCTAT
1 ACCATGGGCGAACCTAT
* *
10318527 ACCATGTGTGAACCTAT
1 ACCATGGGCGAACCTAT
10318544 A
1 A
10318545 TATTATGCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (17 bp):
ACCATGGGCGAACCTAT
Found at i:10318611 original size:17 final size:17
Alignment explanation
Indices: 10318572--10318628 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
10318562 TATGTTGTGC
*
10318572 AAAACCCATGTTATATG
1 AAAACCCATGATATATG
**
10318589 GGAACCCATGATATATG
1 AAAACCCATGATATATG
* * *
10318606 CAAACCAATGATGTATG
1 AAAACCCATGATATATG
10318623 AAAACC
1 AAAACC
10318629 TATAAGGTTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (17 bp):
AAAACCCATGATATATG
Found at i:10321020 original size:21 final size:21
Alignment explanation
Indices: 10320994--10321034 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
10320984 AAATAATGAC
10320994 TAAAATAGT-CCTCGACAACGG
1 TAAAATAGTCCCT-GACAACGG
10321015 TAAAATAGTCCCTGACAACG
1 TAAAATAGTCCCTGACAACG
10321035 ATGCCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (21 bp):
TAAAATAGTCCCTGACAACGG
Found at i:10328208 original size:30 final size:30
Alignment explanation
Indices: 10328153--10328209 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
10328143 TTAATGATCA
**
10328153 AATTCAACTCTTTTTAAAATTTTGATAAAT
1 AATTCAACTCTTTTTAAAAAATTGATAAAT
10328183 AATTCAACTCTTTTTAAAAAATTGATA
1 AATTCAACTCTTTTTAAAAAATTGATA
10328210 GCTAAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.44
Consensus pattern (30 bp):
AATTCAACTCTTTTTAAAAAATTGATAAAT
Found at i:10328518 original size:20 final size:20
Alignment explanation
Indices: 10328480--10328518 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10328470 AAAAGATTTG
*
10328480 AAATCATAGTTGTTTAAATT
1 AAATCATAGTTGTTGAAATT
10328500 AAATCATA-TTGATTGAAAT
1 AAATCATAGTTG-TTGAAAT
10328519 ATCAATCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (20 bp):
AAATCATAGTTGTTGAAATT
Found at i:10332235 original size:483 final size:483
Alignment explanation
Indices: 10331329--10332286 Score: 1907
Period size: 483 Copynumber: 2.0 Consensus size: 483
10331319 AAATTTACCG
10331329 ATACATGCAAGTAGATGAATGCTTCAATCCTCATTAACTAATACAAGGCTAGTTATCCCATTACA
1 ATACATGCAAGTAGATGAATGCTTCAATCCTCATTAACTAATACAAGGCTAGTTATCCCATTACA
10331394 TAAATTTGACAATATTTTCTTTGCATAAAACAGTCTCTCTCGCACACATGCTAAAGTAGCAGCCA
66 TAAATTTGACAATATTTTCTTTGCATAAAACAGTCTCTCTCGCACACATGCTAAAGTAGCAGCCA
10331459 TAGCACATACTAACTAAAAGGTTTTTACAAGTTTATCTCTAGCTCAGTAAGATATTTATCATCTT
131 TAGCACATACTAACTAAAAGGTTTTTACAAGTTTATCTCTAGCTCAGTAAGATATTTATCATCTT
10331524 GGTGTCATTAGGATTTATTCATTATTTTGGGTAGATTATAATTTGCTTATTATTTTTTATGATTC
196 GGTGTCATTAGGATTTATTCATTATTTTGGGTAGATTATAATTTGCTTATTATTTTTTATGATTC
10331589 AAGAGTTAGGATAAGATATTACAAGTAGCTGTGATGATACATCAAGACTAGAAAACTCTCAGTAG
261 AAGAGTTAGGATAAGATATTACAAGTAGCTGTGATGATACATCAAGACTAGAAAACTCTCAGTAG
10331654 CATTTTGAAAGTTTAAATTTTAATAAAACACCCAAATGTCTTCCCTTCCTCCGAGAACTTTTATT
326 CATTTTGAAAGTTTAAATTTTAATAAAACACCCAAATGTCTTCCCTTCCTCCGAGAACTTTTATT
10331719 TTCAATTGCTTCCTTTTTATCTTGTAAGCATGATTTGGTTTAGAGCAAGTGATGGAGAATCGCTT
391 TTCAATTGCTTCCTTTTTATCTTGTAAGCATGATTTGGTTTAGAGCAAGTGATGGAGAATCGCTT
10331784 AGGCTTTGTACTTGTATCAGTAGATTAT
456 AGGCTTTGTACTTGTATCAGTAGATTAT
10331812 ATACATGCAAGTAGATGAATGCTTCAATCCTCATTAACTAATACAAGGCTAGTTATCCCATTACA
1 ATACATGCAAGTAGATGAATGCTTCAATCCTCATTAACTAATACAAGGCTAGTTATCCCATTACA
10331877 TAAATTTGACAATATTTTCTTTGCATAAAACAGTCTCTCTCGCACACATGCTAAAGTAGCAGCCA
66 TAAATTTGACAATATTTTCTTTGCATAAAACAGTCTCTCTCGCACACATGCTAAAGTAGCAGCCA
10331942 TAGCACATACTAACTAAAAGGTTTTTACAAGTTTATCTCTAGCTCAGTAAGATATTTATCATCTT
131 TAGCACATACTAACTAAAAGGTTTTTACAAGTTTATCTCTAGCTCAGTAAGATATTTATCATCTT
10332007 GGTGTCATTAGGATTTATTCATTATTTTGGGTAGATTATAATTTGCTTATTATTTTTTATGATTC
196 GGTGTCATTAGGATTTATTCATTATTTTGGGTAGATTATAATTTGCTTATTATTTTTTATGATTC
*
10332072 AAGAGTTAGGATAAGATATTACAAGTAGCTGTGATGATATATCAAGACTAGAAAACTCTCAGTAG
261 AAGAGTTAGGATAAGATATTACAAGTAGCTGTGATGATACATCAAGACTAGAAAACTCTCAGTAG
10332137 CATTTTGAAAGTTTAAATTTTAATAAAACACCCAAATGTCTTCCCTTCCTCCGAGAACTTTTATT
326 CATTTTGAAAGTTTAAATTTTAATAAAACACCCAAATGTCTTCCCTTCCTCCGAGAACTTTTATT
10332202 TTCAATTGCTTCCTTTTTATCTTGTAAGCATGATTTGGTTTAGAGCAAGTGATGGAGAATCGCTT
391 TTCAATTGCTTCCTTTTTATCTTGTAAGCATGATTTGGTTTAGAGCAAGTGATGGAGAATCGCTT
10332267 AGGCTTTGTACTTGTATCAG
456 AGGCTTTGTACTTGTATCAG
10332287 AGAGAACTTA
Statistics
Matches: 474, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
483 474 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (483 bp):
ATACATGCAAGTAGATGAATGCTTCAATCCTCATTAACTAATACAAGGCTAGTTATCCCATTACA
TAAATTTGACAATATTTTCTTTGCATAAAACAGTCTCTCTCGCACACATGCTAAAGTAGCAGCCA
TAGCACATACTAACTAAAAGGTTTTTACAAGTTTATCTCTAGCTCAGTAAGATATTTATCATCTT
GGTGTCATTAGGATTTATTCATTATTTTGGGTAGATTATAATTTGCTTATTATTTTTTATGATTC
AAGAGTTAGGATAAGATATTACAAGTAGCTGTGATGATACATCAAGACTAGAAAACTCTCAGTAG
CATTTTGAAAGTTTAAATTTTAATAAAACACCCAAATGTCTTCCCTTCCTCCGAGAACTTTTATT
TTCAATTGCTTCCTTTTTATCTTGTAAGCATGATTTGGTTTAGAGCAAGTGATGGAGAATCGCTT
AGGCTTTGTACTTGTATCAGTAGATTAT
Found at i:10338580 original size:31 final size:31
Alignment explanation
Indices: 10338542--10338600 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
10338532 ACAAACCTAG
10338542 ATGCATAACT-GATACTATCCCCTAATGCTGA
1 ATGCATAACTGGA-ACTATCCCCTAATGCTGA
10338573 ATGCATAACTGGAACTATCCCCTAATGC
1 ATGCATAACTGGAACTATCCCCTAATGC
10338601 ATACAGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (31 bp):
ATGCATAACTGGAACTATCCCCTAATGCTGA
Found at i:10340481 original size:7 final size:7
Alignment explanation
Indices: 10340469--10340493 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10340459 TAAATATAAT
10340469 TTTTATA
1 TTTTATA
10340476 TTTTATA
1 TTTTATA
10340483 TTTTATA
1 TTTTATA
10340490 TTTT
1 TTTT
10340494 GGCTTGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTATA
Found at i:10340615 original size:29 final size:33
Alignment explanation
Indices: 10340569--10340637 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 33
10340559 GTTAGTGATT
10340569 TAATATAAATATATATAATT-ATTATT-TAACA
1 TAATATAAATATATATAATTAATTATTATAACA
* *
10340600 T-ATATAATTA-ATATAATTAATTTTTATAACA
1 TAATATAAATATATATAATTAATTATTATAACA
10340631 TAATATA
1 TAATATA
10340638 TTCAGGCCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 8 0.24
30 13 0.39
31 7 0.21
32 5 0.15
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (33 bp):
TAATATAAATATATATAATTAATTATTATAACA
Found at i:10355742 original size:18 final size:18
Alignment explanation
Indices: 10355719--10355755 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
10355709 TTATTGATAC
10355719 TTTTTTTGGGAGTTGGAG
1 TTTTTTTGGGAGTTGGAG
10355737 TTTTTTTGGGAGTTGGAG
1 TTTTTTTGGGAGTTGGAG
10355755 T
1 T
10355756 GGGTGCTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.38, T:0.51
Consensus pattern (18 bp):
TTTTTTTGGGAGTTGGAG
Found at i:10357040 original size:15 final size:16
Alignment explanation
Indices: 10357008--10357042 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
10356998 AATTTTTTTA
*
10357008 TAAAATAATATAATAT
1 TAAAATAATATAAAAT
10357024 TAAAATAA-ATAAAAT
1 TAAAATAATATAAAAT
10357039 TAAA
1 TAAA
10357043 TTGAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAATAATATAAAAT
Found at i:10358082 original size:5 final size:5
Alignment explanation
Indices: 10358072--10358096 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
10358062 AACAATAGAG
10358072 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
10358097 AATTTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:10361852 original size:45 final size:46
Alignment explanation
Indices: 10361704--10361972 Score: 221
Period size: 45 Copynumber: 5.8 Consensus size: 46
10361694 TTTGTGTGCT
* * * *
10361704 AGTGTAAGA-CATGTCTAGGACATGCATCGACCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AG-C
* * * * *
10361750 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCATTGAGACGAAAGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGC
* *
10361797 TAGTGTAAGA-CATATTTGGGACATGCATCGGCCTCGAGATGTAAGC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGC
*
10361843 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGT-ATC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGC
* * *
10361887 AATGTAAGACCATGTCTGGGACATGACATCGGCAC-GGATATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGC-CTCGAGATGT-A-AGC
* *
10361936 TAGTGTAAGACCATGTCTGGGATATGGCGTCGGCCTC
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTC
10361973 AATTTCGATA
Statistics
Matches: 181, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
44 12 0.07
45 51 0.28
46 38 0.21
47 26 0.14
48 20 0.11
49 5 0.03
50 28 0.15
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGC
Found at i:10365927 original size:38 final size:38
Alignment explanation
Indices: 10365835--10365937 Score: 136
Period size: 38 Copynumber: 2.7 Consensus size: 38
10365825 GGCTTAAAGA
* *
10365835 CCCGCAGG-CTATATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCCTA-GTGCTGGTATTATATCCGGGTTAAAT
* * *
10365873 CCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCCTAGTGCTGGTATTATATCCGGGTTAAAT
*
10365911 CCCGCAGTCCTAGTGCTGGTATTATAT
1 CCCGCAGGCCTAGTGCTGGTATTATAT
10365938 ATGAGTTTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 54 0.98
39 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.32
Consensus pattern (38 bp):
CCCGCAGGCCTAGTGCTGGTATTATATCCGGGTTAAAT
Found at i:10365967 original size:40 final size:38
Alignment explanation
Indices: 10365835--10365975 Score: 131
Period size: 38 Copynumber: 3.7 Consensus size: 38
10365825 GGCTTAAAGA
* * *
10365835 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTATTATATACGGGTTAAAT
* *
10365873 CCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATACGGGTTAAAT
* * * * *
10365911 CCCGCAGTCCTAGTGCTGGTATTATATATGAGTTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATACG-GGTTAAA-T
* * *
10365951 CTCGTAGGCTTCGTGCTGGTGTTAT
1 CCCGCAGGCTTCGTGCTGGTATTAT
10365976 GTTTGGGTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 57 0.68
39 6 0.07
40 20 0.24
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.34
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATACGGGTTAAAT
Found at i:10368530 original size:14 final size:15
Alignment explanation
Indices: 10368511--10368564 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
10368501 GTTGCAATAA
10368511 ATTA-TTTTTTAAAT
1 ATTATTTTTTTAAAT
10368525 ATTATTTTTTTAAAT
1 ATTATTTTTTTAAAT
10368540 AGATTACTTTTTTTAAA-
1 --ATTA-TTTTTTTAAAT
10368557 A-TATTTTT
1 ATTATTTTT
10368565 GTTGATGTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.14
14 6 0.17
15 11 0.31
17 4 0.11
18 10 0.28
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
ATTATTTTTTTAAAT
Found at i:10368545 original size:17 final size:16
Alignment explanation
Indices: 10368510--10368556 Score: 62
Period size: 15 Copynumber: 2.9 Consensus size: 16
10368500 AGTTGCAATA
10368510 AATTA-TTTTTTAAAT
1 AATTATTTTTTTAAAT
10368525 -ATTATTTTTTTAAAT
1 AATTATTTTTTTAAAT
10368540 AGATTACTTTTTTTAAA
1 A-ATTA-TTTTTTTAAA
10368557 ATATTTTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.14
15 10 0.36
17 4 0.14
18 10 0.36
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
AATTATTTTTTTAAAT
Found at i:10369747 original size:14 final size:14
Alignment explanation
Indices: 10369728--10369768 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
10369718 TTGTTTCATT
10369728 GAAAATGACTTT-CG
1 GAAAATGA-TTTACG
10369742 GAAAATGATTTACG
1 GAAAATGATTTACG
10369756 GAAAATGATTTAC
1 GAAAATGATTTAC
10369769 TTTTCTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 3 0.12
14 23 0.88
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (14 bp):
GAAAATGATTTACG
Found at i:10370262 original size:15 final size:15
Alignment explanation
Indices: 10370222--10370265 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
10370212 ACTGCAGAAC
*
10370222 ATTTATTATTAATAT
1 ATTTATTATTAAAAT
10370237 ATTTA--A-T-AAAT
1 ATTTATTATTAAAAT
10370248 ATTTATTATTAAAAT
1 ATTTATTATTAAAAT
10370263 ATT
1 ATT
10370266 GAATATTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 8
0.73 0.03 0.24
Matches are distributed among these distances:
11 8 0.33
12 1 0.04
13 2 0.08
14 1 0.04
15 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTATTATTAAAAT
Found at i:10370270 original size:7 final size:7
Alignment explanation
Indices: 10370260--10370286 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
10370250 TTATTATTAA
10370260 AATATTG
1 AATATTG
10370267 AATATTG
1 AATATTG
10370274 AATATTG
1 AATATTG
10370281 AATATT
1 AATATT
10370287 TTTAATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (7 bp):
AATATTG
Found at i:10370337 original size:16 final size:14
Alignment explanation
Indices: 10370306--10370346 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
10370296 ATGTGATCAA
10370306 TATTA-TTTAAAAT
1 TATTATTTTAAAAT
10370319 TATTATTTTAAAAT
1 TATTATTTTAAAAT
10370333 T-TTATTATTAAAAT
1 TATTATT-TTAAAAT
10370347 AAAATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTATTTTAAAAT
Found at i:10370396 original size:22 final size:21
Alignment explanation
Indices: 10370350--10370411 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
10370340 TTAAAATAAA
* * *
10370350 ATTAAAATATTGAATAATTTT
1 ATTAAAATAATAAATTATTTT
10370371 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTAT-TTT
* * *
10370393 ATTATATTAATAATTTATT
1 ATTAAAATAATAAATTATT
10370412 ATATGATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
ATTAAAATAATAAATTATTTT
Found at i:10370979 original size:55 final size:54
Alignment explanation
Indices: 10370900--10371006 Score: 187
Period size: 55 Copynumber: 2.0 Consensus size: 54
10370890 CTGTAAGGCA
*
10370900 TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTTTTCTTCCGTTCTTCAACT
1 TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAACT
*
10370954 TTTTCCATCTCCTTCTTTATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAA
1 TTTTCCATCTCC-TCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAA
10371007 ATCTCTTCCC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
54 12 0.24
55 38 0.76
ACGTcount: A:0.13, C:0.31, G:0.07, T:0.49
Consensus pattern (54 bp):
TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAACT
Found at i:10372289 original size:14 final size:14
Alignment explanation
Indices: 10372266--10372302 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
10372256 AGAGAGAAAA
*
10372266 TTGGGGAAAAGCTT
1 TTGGGAAAAAGCTT
10372280 TTGGGAAAAAGCTT
1 TTGGGAAAAAGCTT
10372294 TTGGGAAAA
1 TTGGGAAAA
10372303 CTCGATTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27
Consensus pattern (14 bp):
TTGGGAAAAAGCTT
Found at i:10375961 original size:15 final size:15
Alignment explanation
Indices: 10375943--10375982 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
10375933 ACTTCATTCC
*
10375943 CTTTAATCATGGTAA
1 CTTTAGTCATGGTAA
10375958 CTTTAGTCATGGTAA
1 CTTTAGTCATGGTAA
10375973 CTTTAGTCAT
1 CTTTAGTCAT
10375983 TGCTTGAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (15 bp):
CTTTAGTCATGGTAA
Found at i:10377535 original size:27 final size:27
Alignment explanation
Indices: 10377505--10377577 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
10377495 TGTCTTGAAT
*
10377505 TTGTTACATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
10377532 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
10377564 TTGTTAGATATTGA
1 TTGTTAGATATTGA
10377578 AATAATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 13 0.33
32 26 0.67
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:10377557 original size:32 final size:32
Alignment explanation
Indices: 10377518--10377578 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
10377508 TTACATATTG
10377518 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
*
10377550 ATTATGTTTTAAGCTTGTTAGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
10377579 ATAATTGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:10378912 original size:16 final size:18
Alignment explanation
Indices: 10378884--10378920 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
10378874 CAAACAATGA
10378884 AAATATAATAAA-TTCTT
1 AAATATAATAAATTTCTT
10378901 AAATAT-ATAAATTTCTT
1 AAATATAATAAATTTCTT
10378918 AAA
1 AAA
10378921 ACAACTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATATAATAAATTTCTT
Found at i:10382350 original size:93 final size:92
Alignment explanation
Indices: 10382214--10382408 Score: 277
Period size: 93 Copynumber: 2.1 Consensus size: 92
10382204 TTGATTTTAG
* * *
10382214 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTACTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
10382278 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
10382306 TAAATTCATATAAGAAAATTTTTACTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTACTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
10382371 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
10382399 CAAATTCATA
1 TAAATTCATA
10382409 AACTATAATC
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
92 17 0.18
93 70 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTACTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:10382456 original size:48 final size:52
Alignment explanation
Indices: 10382386--10382484 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
10382376 AATAATTATT
10382386 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
10382434 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
10382485 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:10382466 original size:17 final size:17
Alignment explanation
Indices: 10382441--10382474 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10382431 ATAATTTTAA
*
10382441 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
10382458 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
10382475 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:10382491 original size:17 final size:16
Alignment explanation
Indices: 10382446--10382493 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
10382436 TTTAAATTTT
10382446 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
10382463 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
10382477 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
10382494 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:10382548 original size:54 final size:54
Alignment explanation
Indices: 10382490--10382668 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 54
10382480 ATAATCATAT
10382490 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
* * * * * * * *
10382544 ATTATATATTTTAATTATATT-ATATTTAATAATAATTATGTTATTTTA-TATTTTACAGTATCA
1 ATTAT-GA-TTTGAGTAAATTCATA--TAAGAAT-ATTA-ATTA-TTAAGAATTTT--A-T-T-A
10382607 TA
54 -A
*
10382609 TATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
10382664 ATTAT
1 ATTAT
10382669 ATATTTTAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 32
0.65 0.12 0.23
Matches are distributed among these distances:
54 10 0.11
55 5 0.05
56 10 0.11
57 7 0.08
58 5 0.05
59 9 0.10
60 6 0.07
61 9 0.10
62 5 0.05
63 7 0.08
64 10 0.11
65 4 0.04
66 5 0.05
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
Found at i:10382551 original size:61 final size:61
Alignment explanation
Indices: 10382486--10382673 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
10382476 AGTTATAATC
10382486 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * * *
10382547 ATATATTTTAATTAT-ATTATATTTA-ATAATAATTATGTTATT-TT-A-TATTTTA-CAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAA-TAT-TAATTATTAAGAATTTTATTA-AATT
*
10382606 ATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
10382667 ATATATT
1 ATATATT
10382674 TTAATTAAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 30 0.32
60 14 0.15
61 38 0.40
62 6 0.06
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:10382565 original size:18 final size:17
Alignment explanation
Indices: 10382534--10382568 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10382524 ATTATTAAGA
10382534 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
10382551 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
10382569 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:10382607 original size:120 final size:120
Alignment explanation
Indices: 10382483--10382705 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
10382473 ATTAGTTATA
10382483 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
* *
10382548 TATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
*
10382603 ATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
10382668 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
10382706 TAAATATGAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
Found at i:10382682 original size:18 final size:17
Alignment explanation
Indices: 10382654--10382688 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10382644 ATTATTAAGA
*
10382654 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
10382671 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
10382689 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:10382700 original size:54 final size:54
Alignment explanation
Indices: 10382517--10382702 Score: 142
Period size: 54 Copynumber: 3.2 Consensus size: 54
10382507 TTCATATAAG
* *
10382517 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
* * * *
10382571 AATAATAATTATGT--TATTTTATATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAATT-ATAT
**
10382634 AAG
53 -TT
* *
10382637 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
10382691 AATAATAATTAT
1 AATAATAATTAT
10382703 GTTTAAATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 32
0.67 0.11 0.22
Matches are distributed among these distances:
53 4 0.04
54 24 0.24
55 5 0.05
56 12 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.12
65 5 0.05
66 13 0.13
67 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (54 bp):
AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
Found at i:10382809 original size:144 final size:147
Alignment explanation
Indices: 10382642--10382913 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
10382632 ATAAGAATAT
*
10382642 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
10382707 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
10382769 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
10382786 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
10382851 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
10382914 CAATAATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:10382826 original size:18 final size:17
Alignment explanation
Indices: 10382798--10382832 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10382788 ATTATTAAGA
*
10382798 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
10382815 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
10382833 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:10383043 original size:44 final size:45
Alignment explanation
Indices: 10382994--10383088 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
10382984 TTACACCTCT
* *
10382994 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
10383038 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
10383083 ATTACA
1 ATTACA
10383089 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:10383088 original size:16 final size:16
Alignment explanation
Indices: 10383067--10383141 Score: 60
Period size: 16 Copynumber: 4.4 Consensus size: 16
10383057 TTGATTTGCT
*
10383067 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
10383083 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
10383099 AATCCAATATACCTCTAATCC
1 -AT----TACACCTCTAATCC
* *
10383120 AATACAGCTCTAATCC
1 ATTACACCTCTAATCC
*
10383136 AATACA
1 ATTACA
10383142 GCGAAGCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
16 33 0.67
17 2 0.04
20 1 0.02
21 13 0.27
ACGTcount: A:0.36, C:0.33, G:0.01, T:0.29
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:10383142 original size:16 final size:16
Alignment explanation
Indices: 10383099--10383143 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
10383089 CCTCTAATCC
* *
10383099 AATCCAATATACCTCT
1 AATCCAATACAGCTCT
10383115 AATCCAATACAGCTCT
1 AATCCAATACAGCTCT
10383131 AATCCAATACAGC
1 AATCCAATACAGC
10383144 GAAGCAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.40, C:0.31, G:0.04, T:0.24
Consensus pattern (16 bp):
AATCCAATACAGCTCT
Found at i:10383541 original size:3 final size:3
Alignment explanation
Indices: 10383533--10383559 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
10383523 TTTCTTTAAG
10383533 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
10383560 TTGTTTTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10389451 original size:3 final size:3
Alignment explanation
Indices: 10389443--10389467 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10389433 CCAAAGAGAG
10389443 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
10389468 AGTGGTGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:10390948 original size:9 final size:9
Alignment explanation
Indices: 10390928--10390962 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
10390918 ATTTATTATT
10390928 TGTTTTATAA
1 TGTTTTA-AA
10390938 TGTTTTAAA
1 TGTTTTAAA
10390947 TGTTTTAAA
1 TGTTTTAAA
10390956 TGTTTTA
1 TGTTTTA
10390963 TAATATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.72
10 7 0.28
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (9 bp):
TGTTTTAAA
Found at i:10397322 original size:17 final size:17
Alignment explanation
Indices: 10397300--10397340 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
10397290 AAAAGACTTA
10397300 ATATAAATAATACAT-AT
1 ATATAAATAATA-ATAAT
*
10397317 ATATAAATATTAATAAT
1 ATATAAATAATAATAAT
10397334 ATATAAA
1 ATATAAA
10397341 AGTGTTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATAAATAATAATAAT
Found at i:10399383 original size:133 final size:133
Alignment explanation
Indices: 10399143--10399430 Score: 443
Period size: 133 Copynumber: 2.2 Consensus size: 133
10399133 GTATTTGAGC
* * *
10399143 CTGCTCCACTACAATTTCAGGGAGACAAGGATAGTGGCTTAAATTTGCTCCATTGTCGATACATG
1 CTGCTCCACTACAACTTCAGGGAGACAAGGATAGTGGCTTAAATCTGCTCCATTGCCGATACATG
* *
10399208 GAGATAAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGCAACTTT-
66 GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAA-TTTC
10399272 CAGT
130 CAGT
* * *
10399276 CTGCTCTACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATG
1 CTGCTCCACTACAACTTCAGGGAGACAAGGATAGTGGCTTAAATCTGCTCCATTGCCGATACATG
* *
10399341 GAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTCC
66 GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTCC
10399406 AGT
131 AGT
* * *
10399409 ATACTCCACTACAACTTTAGGG
1 CTGCTCCACTACAACTTCAGGG
10399431 GGGATAAGAA
Statistics
Matches: 140, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
132 3 0.02
133 137 0.98
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (133 bp):
CTGCTCCACTACAACTTCAGGGAGACAAGGATAGTGGCTTAAATCTGCTCCATTGCCGATACATG
GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTCC
AGT
Found at i:10399388 original size:44 final size:44
Alignment explanation
Indices: 10399207--10399394 Score: 127
Period size: 44 Copynumber: 4.2 Consensus size: 44
10399197 GTCGATACAT
* *
10399207 GGAGATAAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAG
1 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAG
* * *
10399251 GGAGATAAGATCTGCAAC-T-TTC-AGTCTGCTCTACTACAACTTCAG
1 GGAGATAAGAT-T-CACCGTCTTCGA-TCTGCTCCACTACTACTT-AG
** ** * ** * * *
10399296 GGAGATAAGGCT-AGTGGCTTAAATCTGCTCCATTGCCGATAC--AT
1 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACT-AC--TACTTAG
*
10399340 GGAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAG
1 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAG
10399384 GGAGATAAGAT
1 GGAGATAAGAT
10399395 CTGTAATTTC
Statistics
Matches: 105, Mismatches: 26, Indels: 26
0.67 0.17 0.17
Matches are distributed among these distances:
42 4 0.04
43 1 0.01
44 64 0.61
45 31 0.30
46 3 0.03
47 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAG
Found at i:10399550 original size:89 final size:87
Alignment explanation
Indices: 10399251--10399554 Score: 216
Period size: 89 Copynumber: 3.4 Consensus size: 87
10399241 TACTGCTTAG
* * * * * *
10399251 GGAGATAAGATCTGCAACTTTCAGTCTGCTCTACTACAACTTCAGGGAGATAAGGCTAGTGGCTT
1 GGAGATAAGATTTCCATC-TTCAATCTGCTCCACTACAACTTTAGGGAGATAAGGCT-GTGGCTT
10399316 AAATCTGCTCCATTGCCGATACAT
64 AAATCTGCTCCATTGCCGATACAT
* * * * ***
10399340 GGAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTAC-TTAGGGAGATAAGATCTGTAATTT
1 GGAGATAAGATTT-CCATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAG-GCTGTGGCTT
* * * * * * ** **
10399404 CCAGTATACTCCACTACAACTTTA-GG
64 -AAATCTGCTCCATTGC--CGATACAT
* * ** * * * *
10399430 GGGGATAAGAATTATATCTTGAACCTTCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTA
1 GGAGATAAGATTTCCATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGGCT-GTGGCTTA
*
10399495 AATCTGCTCTATTGCCGATACAT
65 AATCTGCTCCATTGCCGATACAT
*
10399518 GGAGATAAGATTTGCCATCTTCTATCTGCTCCACTAC
1 GGAGATAAGATTT-CCATCTTCAATCTGCTCCACTAC
10399555 TGCTTAGGCA
Statistics
Matches: 148, Mismatches: 58, Indels: 18
0.66 0.26 0.08
Matches are distributed among these distances:
87 3 0.02
88 27 0.18
89 85 0.57
90 30 0.20
91 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (87 bp):
GGAGATAAGATTTCCATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGGCTGTGGCTTAA
ATCTGCTCCATTGCCGATACAT
Found at i:10408019 original size:46 final size:46
Alignment explanation
Indices: 10407966--10408285 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
10407956 AGTGTGCTCT
* *
10407966 CTGATATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
10408012 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
10408058 CTGATATGAAATGTGTAAGACCATGGTCGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
10408104 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
10408150 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
10408196 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
10408242 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
10408286 TCATGTCAAA
Statistics
Matches: 256, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 255 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:10413765 original size:26 final size:24
Alignment explanation
Indices: 10413735--10413784 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
10413725 TAAATAAAAA
*
10413735 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
10413761 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
10413785 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:10413804 original size:21 final size:21
Alignment explanation
Indices: 10413755--10413813 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
10413745 ATAATAAATC
*
10413755 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
10413775 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
10413797 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
10413814 TTCTTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:10415846 original size:19 final size:17
Alignment explanation
Indices: 10415824--10415866 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
10415814 AAAAGACTTA
10415824 ATATAAATAATACATATAT
1 ATATAAATAATA-ATA-AT
*
10415843 ATATAAATATTAATAAT
1 ATATAAATAATAATAAT
10415860 ATATAAA
1 ATATAAA
10415867 AGTGTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.39
18 3 0.13
19 11 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATAAATAATAATAAT
Found at i:10416036 original size:13 final size:13
Alignment explanation
Indices: 10416018--10416047 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10416008 AAAATGGAAC
10416018 AAAATAACATGTT
1 AAAATAACATGTT
*
10416031 AAAATAATATGTT
1 AAAATAACATGTT
10416044 AAAA
1 AAAA
10416048 AGATGAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (13 bp):
AAAATAACATGTT
Found at i:10421380 original size:14 final size:15
Alignment explanation
Indices: 10421363--10421392 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10421353 CGTTATTCAA
10421363 AAAATAT-ATTTTAC
1 AAAATATAATTTTAC
10421377 AAAATATAATTTTAC
1 AAAATATAATTTTAC
10421392 A
1 A
10421393 TTTCAAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATATAATTTTAC
Found at i:10422121 original size:14 final size:15
Alignment explanation
Indices: 10422086--10422123 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
10422076 AATATTATTT
10422086 TTAAAAAAAATTAAA
1 TTAAAAAAAATTAAA
10422101 -TACAAAAAAA-TAAA
1 TTA-AAAAAAATTAAA
10422115 TTAAAAAAA
1 TTAAAAAAA
10422124 GTACTGACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
TTAAAAAAAATTAAA
Found at i:10427953 original size:594 final size:598
Alignment explanation
Indices: 10426825--10428022 Score: 2145
Period size: 594 Copynumber: 2.0 Consensus size: 598
10426815 AAAGGTTAAT
10426825 GAAACAAATCTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCACCTATAACTACAC
1 GAAACAAATCTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCACCTATAACTACAC
10426890 GACTCTGAGTCTGAAAATAGCGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
66 GACTCTGAGTCTGAAAATAGCGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
10426955 TGCATGGACATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAACGAAT
131 TGCATGGACATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAACGAAT
*
10427020 TGCTAAACCCCCTTGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
196 TGCTAAACCCCCTAGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
* * *
10427085 CCCTTCAAATATCATCTTTCCAGTAGCATCTAGACTTTCTTTCAGTAAATGTTTTACAAGGCTAA
261 CCCTTCAAACATCACCTTTCCAGTAGCATCTAGACTTTCTTTCAGCAAATGTTTTACAAGGCTAA
*
10427150 ATGGAAAATATTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAAGGATTCCTAGGTGAT
326 ATGGAAAATATTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAAGGAGTCCTAGGTGAT
*
10427215 TCTGTCCCATTATGCTATATTGTGTTTCACCATATCCATAATACACAATTACTTTGAGGTCTTAA
391 TCTGTCCCACTATGCTATATTGTGTTTCACCATATCCATAATACACAATTACTTTGAGGTCTTAA
** *
10427280 CCATATAAATTTGGTAGGTCGCATCAACATCAGTTTTTATGTACTATAAATTTTATATGTTGTTT
456 CCATATAAATTTGGTAGGTCGCATCAACATCAGTTTTTATGTACTATAAATTTTATACATTGATT
10427345 TTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAA-GGG-G-C-TGAATTTGGTTTCAAGTCACAT
521 TTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAAGGGGAGACTTGAATTTGGTTTCAAGTCACAT
10427406 CAATGAGGCATTA
586 CAATGAGGCATTA
* * *
10427419 GAAACAAATTTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCATCTATAACTACAT
1 GAAACAAATCTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCACCTATAACTACAC
*
10427484 GACTCTGAGTCTGAAAATAGTGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
66 GACTCTGAGTCTGAAAATAGCGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
* *
10427549 TGCATGGGCATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAATGAAT
131 TGCATGGACATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAACGAAT
10427614 TGCTAAACCCCCTAGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
196 TGCTAAACCCCCTAGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
10427679 CCCTTCAAACATCACCTTTCCAGTAGCATCTAGACTTTCTTTCAGCAAATGTTTTAC-AGTGCTA
261 CCCTTCAAACATCACCTTTCCAGTAGCATCTAGACTTTCTTTCAGCAAATGTTTTACAAG-GCTA
* *
10427743 AATGGAAAATTTTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAATGAGTCCTAGGTGA
325 AATGGAAAATATTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAAGGAGTCCTAGGTGA
** *
10427808 TTCTGTCCTGCTATGCTATATTGTGTTTCACCATATCCATAATACACAATTCCTTTGAGGTCTTA
390 TTCTGTCCCACTATGCTATATTGTGTTTCACCATATCCATAATACACAATTACTTTGAGGTCTTA
*
10427873 ACCATATAAATTTGGTAGGTCGCATTAACATCAGTTTTTATGTACTATAAATTTTATACATTGAT
455 ACCATATAAATTTGGTAGGTCGCATCAACATCAGTTTTTATGTACTATAAATTTTATACATTGAT
10427938 TTTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAAGGGGGAGACCTTGAATTTGGTTTCAAGTCA
520 TTTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAA-GGGGAGA-CTTGAATTTGGTTTCAAGTCA
10428003 CATCAATGAGGCATTA
583 CATCAATGAGGCATTA
10428019 GAAA
1 GAAA
10428023 AGAAAAACAA
Statistics
Matches: 576, Mismatches: 21, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
593 2 0.00
594 530 0.92
596 3 0.01
597 1 0.00
599 1 0.00
600 39 0.07
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (598 bp):
GAAACAAATCTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCACCTATAACTACAC
GACTCTGAGTCTGAAAATAGCGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
TGCATGGACATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAACGAAT
TGCTAAACCCCCTAGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
CCCTTCAAACATCACCTTTCCAGTAGCATCTAGACTTTCTTTCAGCAAATGTTTTACAAGGCTAA
ATGGAAAATATTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAAGGAGTCCTAGGTGAT
TCTGTCCCACTATGCTATATTGTGTTTCACCATATCCATAATACACAATTACTTTGAGGTCTTAA
CCATATAAATTTGGTAGGTCGCATCAACATCAGTTTTTATGTACTATAAATTTTATACATTGATT
TTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAAGGGGAGACTTGAATTTGGTTTCAAGTCACAT
CAATGAGGCATTA
Done.