Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 290 of 344
Found at i:97050701 original size:26 final size:26
Alignment explanation
Indices: 97050669--97050740 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
97050659 ATTGATAATA
*
97050669 TTAGGTAAATGTTTCATGATAATGGG
1 TTAGGTAAATGTTCCATGATAATGGG
97050695 TTAGGTAAATGTTCCATGATAATGGG
1 TTAGGTAAATGTTCCATGATAATGGG
*
97050721 TTAGGTAAATGTTCTATGAT
1 TTAGGTAAATGTTCCATGAT
97050741 GGGCATTTCA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.39
Consensus pattern (26 bp):
TTAGGTAAATGTTCCATGATAATGGG
Found at i:97051049 original size:41 final size:40
Alignment explanation
Indices: 97050946--97051235 Score: 404
Period size: 41 Copynumber: 7.1 Consensus size: 40
97050936 CAAAAATTGT
* *
97050946 AAAACACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGGCGCTTTT--GAAAAACGCCGCTA
* *
97050988 AAAA-CAGAGCAATAGCGGCGCTTTAGTAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTG-AAAAACGCCGCTA
*
97051028 AAAACCAGAGCATTAACGGCGCTTTTGAAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTG-AAAAACGCCGCTA
*
97051069 AAAACCAGAGCATTAGCGGCGCTTTTAGAATAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTT-GAAAAACGCCGCTA
* **
97051110 AAAACTAGAGCATTAGCGGCGCTTTTGGAAAAACAACGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTT-GAAAAACGCCGCTA
97051151 AAAACCAGAGCATTAGCGGCGCTTTTGATAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGA-AAAACGCCGCTA
97051192 AAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTT-GAAAAACGCCGCTA
97051233 AAA
1 AAA
97051236 GTCATATAAC
Statistics
Matches: 226, Mismatches: 16, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
40 35 0.15
41 184 0.81
42 7 0.03
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (40 bp):
AAAACCAGAGCATTAGCGGCGCTTTTGAAAAACGCCGCTA
Found at i:97051163 original size:123 final size:122
Alignment explanation
Indices: 97050946--97051235 Score: 447
Period size: 123 Copynumber: 2.4 Consensus size: 122
97050936 CAAAAATTGT
* *
97050946 AAAACACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCT
1 AAAAC-CAGAGCATTAGCGGCGCTTTTA-GAAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCT
* **
97051010 TTAGTAAAAACGCCGCTAAAAACCAGAGCATTAACGGCGCTTTTGAAAAAACGCCGCTA
64 TTAGGAAAAACAACGCTAAAAACCAGAGCATTAACGGCGCTTTTGAAAAAACGCCGCTA
* *
97051069 AAAACCAGAGCATTAGCGGCGCTTTTAGAATAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTT
1 AAAACCAGAGCATTAGCGGCGCTTTTAGAAAAACGCCGCTAAAAAC-AGAGCAATAGCGGCGCTT
* * *
97051134 TTGGAAAAACAACGCTAAAAACCAGAGCATTAGCGGCGCTTTTGATAAAACGCCGCTA
65 TAGGAAAAACAACGCTAAAAACCAGAGCATTAACGGCGCTTTTGAAAAAACGCCGCTA
*
97051192 AAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAA
1 AAAACCAGAGCATTAGCGGCGCTTTTAGAAAAACGCCGCTAAAA
97051236 GTCATATAAC
Statistics
Matches: 153, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
122 32 0.21
123 121 0.79
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (122 bp):
AAAACCAGAGCATTAGCGGCGCTTTTAGAAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTT
AGGAAAAACAACGCTAAAAACCAGAGCATTAACGGCGCTTTTGAAAAAACGCCGCTA
Found at i:97051407 original size:14 final size:14
Alignment explanation
Indices: 97051385--97051478 Score: 52
Period size: 14 Copynumber: 6.7 Consensus size: 14
97051375 TTAATTATCA
*
97051385 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
97051399 TTATGGTTTAAGATGGT
1 TTATGGTTT-A-A-GGT
* *
97051416 ATAGGGTTTAAGGT
1 TTATGGTTTAAGGT
97051430 TTATGAG-TTAA---
1 TTATG-GTTTAAGGT
* *
97051441 CTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
97051455 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
97051469 TTAAGGTTTA
1 TTATGGTTTA
97051479 GGAGTTAACT
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
10 1 0.02
11 8 0.13
14 37 0.61
15 3 0.05
16 2 0.03
17 10 0.16
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:97051585 original size:21 final size:21
Alignment explanation
Indices: 97051561--97051604 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
97051551 GGGTTGGAAT
* *
97051561 TTAAGGCGTAAGGGTTTGGTG
1 TTAAGGAGTAAGGGTTTAGTG
*
97051582 TTAAGGATTAAGGGTTTAGTG
1 TTAAGGAGTAAGGGTTTAGTG
97051603 TT
1 TT
97051605 TAGTGTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.02, G:0.36, T:0.39
Consensus pattern (21 bp):
TTAAGGAGTAAGGGTTTAGTG
Found at i:97052271 original size:3 final size:3
Alignment explanation
Indices: 97052263--97052291 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
97052253 CATTTTAGTA
97052263 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97052292 AAGAGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:97059440 original size:16 final size:15
Alignment explanation
Indices: 97059395--97059441 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
97059385 TATAGAAAAT
97059395 AAATAT-TATTTAATTA
1 AAATATATATTT--TTA
97059411 AAATATATATTTTTA
1 AAATATATATTTTTA
*
97059426 AAATTTATAATTTTTA
1 AAATATAT-ATTTTTA
97059442 GCGGCGTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 10 0.36
16 13 0.46
17 5 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AAATATATATTTTTA
Found at i:97062037 original size:13 final size:13
Alignment explanation
Indices: 97062021--97062055 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
97062011 AAAATTTGAC
* *
97062021 ATATAAATATTAT
1 ATATAAAAAATAT
97062034 ATATAAAAAATAT
1 ATATAAAAAATAT
97062047 ATATAAAAA
1 ATATAAAAA
97062056 GAATCGGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATATAAAAAATAT
Found at i:97063966 original size:16 final size:16
Alignment explanation
Indices: 97063945--97064004 Score: 52
Period size: 16 Copynumber: 3.7 Consensus size: 16
97063935 TTTTCATTCT
97063945 GATTATA-ATTTATTTG
1 GATTATATA-TTATTTG
97063961 GATTATATATTATTTG
1 GATTATATATTATTTG
* * *
97063977 TAATTCTACTTTTATTTG
1 -GATTATA-TATTATTTG
97063995 GA-TATATATT
1 GATTATATATT
97064005 TTTTAAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
15 3 0.09
16 17 0.49
17 7 0.20
18 8 0.23
ACGTcount: A:0.30, C:0.03, G:0.10, T:0.57
Consensus pattern (16 bp):
GATTATATATTATTTG
Found at i:97064339 original size:9 final size:9
Alignment explanation
Indices: 97064327--97064359 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
97064317 TTAATTAGTC
97064327 TTATTAAAA
1 TTATTAAAA
97064336 TTATTAAAA
1 TTATTAAAA
*
97064345 ATATTAAAA
1 TTATTAAAA
97064354 TT-TTAA
1 TTATTAA
97064360 TAAATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TTATTAAAA
Found at i:97064371 original size:18 final size:18
Alignment explanation
Indices: 97064328--97064370 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
97064318 TAATTAGTCT
97064328 TATTAAAATTATTAAAAA
1 TATTAAAATTATTAAAAA
97064346 TATTAAAATT-TTAATAAA
1 TATTAAAATTATTAA-AAA
97064364 T-TTAAAA
1 TATTAAAA
97064371 AAAAACTCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TATTAAAATTATTAAAAA
Found at i:97067018 original size:26 final size:26
Alignment explanation
Indices: 97066989--97067044 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
97066979 TGATACAAAT
*
97066989 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
97067015 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
97067041 TGAT
1 TGAT
97067045 GGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGATAAATGTTCCA
Found at i:97068705 original size:27 final size:27
Alignment explanation
Indices: 97068667--97068804 Score: 183
Period size: 27 Copynumber: 5.1 Consensus size: 27
97068657 AAACGTCCTA
*
97068667 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
97068694 GTGGCTCTGCCAC-ATATATCTGTTCTG
1 GTGGCTCTGCCACAAT-TATCTGATCTG
*
97068721 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
97068748 GTGGCTCTGCCAC-ATATATCTGTTCTG
1 GTGGCTCTGCCACAAT-TATCTGATCTG
*
97068775 GTGGTTCTGCCACAA-TATCTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
97068802 GTG
1 GTG
97068805 ACTTCGTCAT
Statistics
Matches: 98, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
26 10 0.10
27 85 0.87
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:97068749 original size:54 final size:54
Alignment explanation
Indices: 97068667--97068804 Score: 242
Period size: 54 Copynumber: 2.6 Consensus size: 54
97068657 AAACGTCCTA
97068667 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
97068721 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
* *
97068775 GTGGTTCTGCCACAA-TATCTGTATCTGGTG
1 GTGGCTATGCCACAATTATCTG-ATCTGGTG
97068805 ACTTCGTCAT
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
Found at i:97068818 original size:27 final size:26
Alignment explanation
Indices: 97068674--97068822 Score: 135
Period size: 27 Copynumber: 5.5 Consensus size: 26
97068664 CTAGTGGCTA
*
97068674 TGCCACAATTATCTGATCTGGTGGC-TC
1 TGCCACAA-TATCTGTTCTGGT-GCTTC
*
97068701 TGCCACATATATCTGTTCTGGTGGC-TA
1 TGCCACA-ATATCTGTTCTGGT-GCTTC
*
97068728 TGCCACAATTATCTGATCTGGTGGC-TC
1 TGCCACAA-TATCTGTTCTGGT-GCTTC
*
97068755 TGCCACATATATCTGTTCTGGTGGTTC
1 TGCCACA-ATATCTGTTCTGGTGCTTC
97068782 TGCCACAATATCTGTATCTGGTGACTTC
1 TGCCACAATATCTGT-TCTGGTG-CTTC
* *
97068810 -GTCATAATATCTG
1 TGCCACAATATCTG
97068823 GCAGCCTCGC
Statistics
Matches: 107, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
26 10 0.09
27 92 0.86
28 5 0.05
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGCTTC
Found at i:97074118 original size:26 final size:26
Alignment explanation
Indices: 97074089--97074196 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
97074079 TGATACAAAT
97074089 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
97074115 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97074141 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97074167 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97074193 TGAT
1 TGAT
97074197 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:97076600 original size:27 final size:26
Alignment explanation
Indices: 97076570--97076624 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
97076560 CCTAGAATCT
*
97076570 CACACCCCCGTGTGGGCCACACGAGCC
1 CACACCCCCGTGTGGCCCACAC-AGCC
* *
97076597 CACACGCTCGTGTGGCCCACACAGCC
1 CACACCCCCGTGTGGCCCACACAGCC
97076623 CA
1 CA
97076625 AATTACTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.20, C:0.47, G:0.24, T:0.09
Consensus pattern (26 bp):
CACACCCCCGTGTGGCCCACACAGCC
Found at i:97087932 original size:19 final size:19
Alignment explanation
Indices: 97087883--97087932 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
97087873 TCCAAGAACT
*
97087883 TGATAGAGCTTTGAGAGGA
1 TGATAGAGTTTTGAGAGGA
* *
97087902 TAATATGAGTTTTGAGAGGG
1 TGATA-GAGTTTTGAGAGGA
97087922 TGATAGAGTTT
1 TGATAGAGTTT
97087933 AGATCACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.30, C:0.02, G:0.34, T:0.34
Consensus pattern (19 bp):
TGATAGAGTTTTGAGAGGA
Found at i:97094906 original size:19 final size:18
Alignment explanation
Indices: 97094869--97094907 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
97094859 ATTATCCCTA
**
97094869 AATTTTAAAATAATTTTT
1 AATTTTAAAATAAAGTTT
97094887 AATTTTAAAAATAAAGTTT
1 AATTTT-AAAATAAAGTTT
97094906 AA
1 AA
97094908 AATATTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
AATTTTAAAATAAAGTTT
Found at i:97094917 original size:30 final size:31
Alignment explanation
Indices: 97094867--97094928 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
97094857 TAATTATCCC
*
97094867 TAAATTTTAAAATAATTTTTAATTTTAAAAA
1 TAAAGTTTAAAATAATTTTTAATTTTAAAAA
*
97094898 TAAAGTTTAAAAT-ATTTTTAATTTTAGAAA
1 TAAAGTTTAAAATAATTTTTAATTTTAAAAA
97094928 T
1 T
97094929 CATAAATACC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 17 0.59
31 12 0.41
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (31 bp):
TAAAGTTTAAAATAATTTTTAATTTTAAAAA
Found at i:97099754 original size:21 final size:21
Alignment explanation
Indices: 97099729--97099769 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97099719 GTATTGTTTA
*
97099729 AATTTATTTTAATTAAATTTT
1 AATTTAATTTAATTAAATTTT
*
97099750 AATTTAATTTAATTTAATTT
1 AATTTAATTTAATTAAATTT
97099770 ATCTTTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
AATTTAATTTAATTAAATTTT
Found at i:97099755 original size:5 final size:5
Alignment explanation
Indices: 97099729--97099770 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
97099719 GTATTGTTTA
* *
97099729 AATTT ATTTT AATTA AATTTT AATTT AATTT AATTT AATTT A
1 AATTT AATTT AATTT AA-TTT AATTT AATTT AATTT AATTT A
97099771 TCTTTTTGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
5 28 0.88
6 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:97099917 original size:14 final size:13
Alignment explanation
Indices: 97099898--97099947 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
97099888 TAAACCAAAT
97099898 ATTAAAACTAATAA
1 ATTAAAA-TAATAA
*
97099912 ATTAAAATTTATAA
1 ATTAAAA-TAATAA
*
97099926 ATTAAAATAAAAA
1 ATTAAAATAATAA
97099939 ATTTAAAAT
1 A-TTAAAAT
97099948 TAAAATTGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
13 5 0.16
14 26 0.84
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (13 bp):
ATTAAAATAATAA
Found at i:97099938 original size:20 final size:20
Alignment explanation
Indices: 97099915--97099953 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
97099905 CTAATAAATT
97099915 AAAATTTATAAATTAAAATAA
1 AAAATTTA-AAATTAAAATAA
97099936 AAAATTTAAAATTAAAAT
1 AAAATTTAAAATTAAAAT
97099954 TGTGTTAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATTTAAAATTAAAATAA
Found at i:97099952 original size:14 final size:14
Alignment explanation
Indices: 97099875--97099952 Score: 52
Period size: 14 Copynumber: 5.3 Consensus size: 14
97099865 ATTTTTTATG
*
97099875 AAAATTTTAAAATT
1 AAAAATTTAAAATT
*
97099889 AAACCAAATATTAAAACT
1 -AA--AAAT-TTAAAATT
97099907 AATAAA-TTAAAATTT
1 AA-AAATTTAAAA-TT
* *
97099922 ATAAA-TTAAAATA
1 AAAAATTTAAAATT
97099935 AAAAATTTAAAATT
1 AAAAATTTAAAATT
97099949 AAAA
1 AAAA
97099953 TTGTGTTAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
13 5 0.10
14 26 0.52
15 4 0.08
16 3 0.06
17 5 0.10
18 7 0.14
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (14 bp):
AAAAATTTAAAATT
Found at i:97101132 original size:26 final size:26
Alignment explanation
Indices: 97101103--97101158 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
97101093 TGATAAAAAT
97101103 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97101129 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97101155 TGAT
1 TGAT
97101159 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:97104726 original size:70 final size:71
Alignment explanation
Indices: 97104639--97104778 Score: 212
Period size: 71 Copynumber: 2.0 Consensus size: 71
97104629 GTGGATAGAG
* * *
97104639 TTTGTTGCCTTTTTATATG-CT-ATCCATGGTTGTTTAAATGGATTAGATAGAGAATCGATTGAT
1 TTTGTTACCTTTTTATATGTCTAAT-CATGATTGTTTAAATGAATTAGATAGAGAATCGATTGAT
97104702 ATATCAA
65 ATATCAA
* *
97104709 TTTGTTACCTTTTTATATGTCTAATCATGATTGTTTAAATGAATTAGATCGAGAATTGATTGATA
1 TTTGTTACCTTTTTATATGTCTAATCATGATTGTTTAAATGAATTAGATAGAGAATCGATTGATA
97104774 TATCA
66 TATCA
97104779 GTTCGATAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
70 18 0.29
71 43 0.68
72 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.44
Consensus pattern (71 bp):
TTTGTTACCTTTTTATATGTCTAATCATGATTGTTTAAATGAATTAGATAGAGAATCGATTGATA
TATCAA
Found at i:97105242 original size:17 final size:17
Alignment explanation
Indices: 97105217--97105254 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
97105207 AAGCAATATT
*
97105217 TTTAAA-AAATAA-TAA
1 TTTAAAGAAAAAACTAA
97105232 TTTAAAGAAAAAACTAA
1 TTTAAAGAAAAAACTAA
97105249 TTTAAA
1 TTTAAA
97105255 ATAAAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 5 0.25
17 9 0.45
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
TTTAAAGAAAAAACTAA
Found at i:97105260 original size:17 final size:15
Alignment explanation
Indices: 97105217--97105261 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
97105207 AAGCAATATT
*
97105217 TTTAAAAAATAATAA
1 TTTAAAAAAAAATAA
97105232 TTTAAAGAAAAAACTAA
1 TTTAAA-AAAAAA-TAA
*
97105249 TTTAAAATAAAAT
1 TTTAAAAAAAAAT
97105262 TGGGGTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 7 0.27
16 10 0.38
17 9 0.35
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
TTTAAAAAAAAATAA
Found at i:97109909 original size:46 final size:46
Alignment explanation
Indices: 97109841--97109953 Score: 217
Period size: 46 Copynumber: 2.4 Consensus size: 46
97109831 TTAGGCCTTT
97109841 TAAAATTTTTAAAATTTTAAATTAGTAAAAGTAAAATTATACTTTGA
1 TAAAA-TTTTAAAATTTTAAATTAGTAAAAGTAAAATTATACTTTGA
97109888 TAAAATTTTAAAATTTTAAATTAGTAAAAGTAAAATTATACTTTGA
1 TAAAATTTTAAAATTTTAAATTAGTAAAAGTAAAATTATACTTTGA
97109934 TAAAATTTTAAAATTTTAAA
1 TAAAATTTTAAAATTTTAAA
97109954 GATATAAACT
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
46 61 0.92
47 5 0.08
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.42
Consensus pattern (46 bp):
TAAAATTTTAAAATTTTAAATTAGTAAAAGTAAAATTATACTTTGA
Found at i:97115499 original size:19 final size:20
Alignment explanation
Indices: 97115472--97115509 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
97115462 CAGTTTCAGA
*
97115472 TTCAGATTCAGATA-ACAGC
1 TTCAAATTCAGATATACAGC
97115491 TTCAAATTCAGATATACAG
1 TTCAAATTCAGATATACAG
97115510 AATCCTACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (20 bp):
TTCAAATTCAGATATACAGC
Found at i:97116013 original size:70 final size:70
Alignment explanation
Indices: 97115933--97116083 Score: 250
Period size: 70 Copynumber: 2.2 Consensus size: 70
97115923 ATGGGCCCAT
97115933 ATGCCCGTGTGGCCCACACGCCCAGATTGGCCTTA-CCAGTGTAGCCCACACAGCCTGGCCCAAA
1 ATGCCCGTGTGGCCCACACGCCCAGATTGGCCTTACCCA-TGTAGCCCACACAGCCTGGCCCAAA
97115997 ATTCAC
65 ATTCAC
* *
97116003 ATGCCCGTGTGGCCCACACGCCCAGATTGGCCTTACCCATGTAGCCCACATAGCCTGGCCTAAAA
1 ATGCCCGTGTGGCCCACACGCCCAGATTGGCCTTACCCATGTAGCCCACACAGCCTGGCCCAAAA
*
97116068 TTCGC
66 TTCAC
*
97116073 ATGCCTGTGTG
1 ATGCCCGTGTG
97116084 ACATGCCTGT
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
70 73 0.96
71 3 0.04
ACGTcount: A:0.21, C:0.36, G:0.23, T:0.20
Consensus pattern (70 bp):
ATGCCCGTGTGGCCCACACGCCCAGATTGGCCTTACCCATGTAGCCCACACAGCCTGGCCCAAAA
TTCAC
Found at i:97116090 original size:13 final size:13
Alignment explanation
Indices: 97116072--97116096 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97116062 CTAAAATTCG
97116072 CATGCCTGTGTGA
1 CATGCCTGTGTGA
97116085 CATGCCTGTGTG
1 CATGCCTGTGTG
97116097 GGCCCACACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (13 bp):
CATGCCTGTGTGA
Found at i:97121115 original size:20 final size:18
Alignment explanation
Indices: 97121059--97121120 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 18
97121049 GTTTTTAGAG
97121059 TATTTTATGATGTTTTATAA
1 TATTTTATGA--TTTTATAA
*
97121079 TATTTTACTTGATTTTATTA
1 TATTTTA--TGATTTTATAA
*
97121099 TATTTTTATGATATTTAAAA
1 TA-TTTTATGAT-TTTATAA
97121119 TA
1 TA
97121121 ATTCAGGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
19 4 0.11
20 23 0.66
21 5 0.14
22 3 0.09
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (18 bp):
TATTTTATGATTTTATAA
Found at i:97121230 original size:6 final size:6
Alignment explanation
Indices: 97121219--97121243 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
97121209 CATTATCAAC
97121219 ATATAA ATATAA ATATAA ATATAA A
1 ATATAA ATATAA ATATAA ATATAA A
97121244 AGGGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATATAA
Found at i:97122662 original size:25 final size:26
Alignment explanation
Indices: 97122623--97122671 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
97122613 ACAACTCACT
*
97122623 CCCACTTTTGGCCTCCA-ATAAGCCA
1 CCCACTTTTAGCCTCCATATAAGCCA
*
97122648 CCCACTTTTATCCTCCATATAAGC
1 CCCACTTTTAGCCTCCATATAAGC
97122672 GACCAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.24, C:0.39, G:0.08, T:0.29
Consensus pattern (26 bp):
CCCACTTTTAGCCTCCATATAAGCCA
Found at i:97123850 original size:20 final size:21
Alignment explanation
Indices: 97123810--97123853 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
97123800 ATTGATTTTG
*
97123810 TATTTTTTTTAAATTCAATAT
1 TATTTTTATTAAATTCAATAT
97123831 TATTTTTATTAAATTC-ATAT
1 TATTTTTATTAAATTCAATAT
97123851 TAT
1 TAT
97123854 ATCATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (21 bp):
TATTTTTATTAAATTCAATAT
Found at i:97129295 original size:19 final size:20
Alignment explanation
Indices: 97129271--97129309 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
97129261 GGGACTTTGG
*
97129271 TCTTTTTCTT-TTTTTTTCT
1 TCTTTTCCTTCTTTTTTTCT
97129290 TCTTTTCCTTCTTTTTTTCT
1 TCTTTTCCTTCTTTTTTTCT
97129310 GGTCTAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (20 bp):
TCTTTTCCTTCTTTTTTTCT
Found at i:97129886 original size:9 final size:9
Alignment explanation
Indices: 97129869--97129923 Score: 92
Period size: 9 Copynumber: 6.1 Consensus size: 9
97129859 TGAGTTTTCG
97129869 AATTCGAAT
1 AATTCGAAT
*
97129878 AACTCGAAT
1 AATTCGAAT
97129887 AATTCGAAT
1 AATTCGAAT
97129896 AATTCGAAT
1 AATTCGAAT
97129905 AATTCGAAT
1 AATTCGAAT
*
97129914 AATTAGAAT
1 AATTCGAAT
97129923 A
1 A
97129924 TCAAACTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (9 bp):
AATTCGAAT
Found at i:97130311 original size:17 final size:16
Alignment explanation
Indices: 97130278--97130308 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97130268 CTATTTACTT
*
97130278 TCCCTCAAAACTTTTA
1 TCCCCCAAAACTTTTA
97130294 TCCCCCAAAACTTTT
1 TCCCCCAAAACTTTT
97130309 TATTTTCCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (16 bp):
TCCCCCAAAACTTTTA
Found at i:97134084 original size:16 final size:16
Alignment explanation
Indices: 97134044--97134087 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
97134034 AAAAATAGAC
97134044 ATAATAACAAAAATTAT
1 ATAATAA-AAAAATTAT
*
97134061 AAAATAAAATAAATT-T
1 ATAATAAAA-AAATTAT
97134077 ATAATAAAAAA
1 ATAATAAAAAA
97134088 TCAAAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 2 0.08
16 11 0.46
17 11 0.46
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAATAAAAAAATTAT
Found at i:97136415 original size:19 final size:19
Alignment explanation
Indices: 97136393--97136430 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
97136383 AATAACACTT
97136393 TTTATAATTTTTATTTATA
1 TTTATAATTTTTATTTATA
97136412 TTTATAATTTTTATTTATA
1 TTTATAATTTTTATTTATA
97136431 CTTTTTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTATAATTTTTATTTATA
Found at i:97142445 original size:19 final size:19
Alignment explanation
Indices: 97142421--97142475 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
97142411 ATTGTGCCAT
*
97142421 ATCTAAGATTGCATATCAC
1 ATCTAAGATTGCATATCAA
97142440 ATCTAAGATTGCATATCAA
1 ATCTAAGATTGCATATCAA
97142459 ATCTAAGATTGCATATC
1 ATCTAAGATTGCATATC
97142476 CTTAAGGATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (19 bp):
ATCTAAGATTGCATATCAA
Found at i:97142472 original size:38 final size:36
Alignment explanation
Indices: 97142396--97142475 Score: 106
Period size: 38 Copynumber: 2.2 Consensus size: 36
97142386 CATATCATAT
* * *
97142396 CATATCATATCTAAGATTGTGCCATATCTAAGATTG
1 CATATCACATCTAAGATTGTACCAAATCTAAGATTG
*
97142432 CATATCACATCTAAGATTGCATATCAAATCTAAGATTG
1 CATATCACATCTAAGATTG--TACCAAATCTAAGATTG
97142470 CATATC
1 CATATC
97142476 CTTAAGGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 18 0.47
38 20 0.53
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (36 bp):
CATATCACATCTAAGATTGTACCAAATCTAAGATTG
Found at i:97142911 original size:82 final size:82
Alignment explanation
Indices: 97142795--97143547 Score: 1229
Period size: 82 Copynumber: 9.2 Consensus size: 82
97142785 AGATGTCAAA
* * * * ** *
97142795 TCATCTTGGATCTGTCTCAATGAAGGTCAAATCTGCTATGTCTTTAATCTGCT-CCTCGTCGAAT
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCT-GCCGAAT
97142859 ACAGAGAGATAAGATCTG
65 ACAGAGAGATAAGATCTG
* *
97142877 TCATCTTGGATCTGCCCCGATGAAGGTCGGATCTGCTATGTCTTCGATCTGCTCCCTGTCGAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
97142942 CAGAGAGATAAGATCTG
66 CAGAGAGATAAGATCTG
*
97142959 TCATCTTGGATCTGCCCCGATGAAGGGCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
97143024 CAGAGAGATAAGATCTG
66 CAGAGAGATAAGATCTG
* *
97143041 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGTTCCCTACCGAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
97143106 CAGAGAGATAAGATCTG
66 CAGAGAGATAAGATCTG
* * * *
97143123 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGTTCTACTCCCTTCCGAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
97143188 CAGAGAGATAAGATCTG
66 CAGAGAGATAAGATCTG
* *
97143205 TCATCTTGGATCTGCCCCAATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCTGCCGAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
* *
97143270 TAAAGAGATAAGATCTG
66 CAGAGAGATAAGATCTG
* * *
97143287 TCATCTTGGATCTGCCCTGATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCTTGCCGAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
97143352 CAGAGAGATAAGATCTG
66 CAGAGAGATAAGATCTG
*
97143369 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCTGCCGAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
97143434 CAGAGAGATAAGATCTG
66 CAGAGAGATAAGATCTG
* * *
97143451 TCATCTTGGATCTACCCCGATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCTGCCGAATT
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
*
97143516 TAGAGAGATAAGATCTG
66 CAGAGAGATAAGATCTG
*
97143533 TTATCTTGGATCTGC
1 TCATCTTGGATCTGC
97143548 TCCCCGTCTA
Statistics
Matches: 628, Mismatches: 42, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
82 625 1.00
83 3 0.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (82 bp):
TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGCCGAATA
CAGAGAGATAAGATCTG
Found at i:97143319 original size:35 final size:35
Alignment explanation
Indices: 97143280--97143403 Score: 88
Period size: 35 Copynumber: 3.2 Consensus size: 35
97143270 TAAAGAGATA
97143280 AGATCTGTCATCTTGGATCTGCCCTGATGAAGGTC
1 AGATCTGTCATCTTGGATCTGCCCTGATGAAGGTC
* * *
97143315 AGATCTG-CTATGTCTTTGATCTGCTCCTTGCCGAATACAGAGAGATA
1 AGATCTGTC-A--TCTTGGATCTGC-CC-T---G-AT---GA-AGGTC
*
97143362 AGATCTGTCATCTTGGATCTGCCCCGATGAAGGTC
1 AGATCTGTCATCTTGGATCTGCCCTGATGAAGGTC
97143397 AGATCTG
1 AGATCTG
97143404 CTATGTCTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 28
0.66 0.07 0.27
Matches are distributed among these distances:
34 1 0.01
35 18 0.26
36 2 0.03
37 11 0.16
38 2 0.03
39 3 0.04
40 1 0.01
42 1 0.01
43 2 0.03
44 2 0.03
45 11 0.16
46 2 0.03
47 11 0.16
48 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (35 bp):
AGATCTGTCATCTTGGATCTGCCCTGATGAAGGTC
Found at i:97143338 original size:37 final size:37
Alignment explanation
Indices: 97143290--97143420 Score: 97
Period size: 37 Copynumber: 3.3 Consensus size: 37
97143280 AGATCTGTCA
97143290 TCTTGGATCTGCCCTGATGAAGGTCAGATCTGCTATG
1 TCTTGGATCTGCCCTGATGAAGGTCAGATCTGCTATG
* * *
97143327 TCTTTGATCTGCTCCTTGCCGAATACAGAGAGATAAGATCTG-TCA--
1 TCTTGGATCTGC-CC-T---G-AT---GA-AGGTCAGATCTGCT-ATG
*
97143372 TCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATG
1 TCTTGGATCTGCCCTGATGAAGGTCAGATCTGCTATG
*
97143409 TCTTTGATCTGC
1 TCTTGGATCTGC
97143421 TCCCTGCCGA
Statistics
Matches: 72, Mismatches: 8, Indels: 28
0.67 0.07 0.26
Matches are distributed among these distances:
35 11 0.15
36 3 0.04
37 22 0.31
38 2 0.03
39 3 0.04
40 1 0.01
42 1 0.01
43 2 0.03
44 2 0.03
45 11 0.15
46 3 0.04
47 11 0.15
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.33
Consensus pattern (37 bp):
TCTTGGATCTGCCCTGATGAAGGTCAGATCTGCTATG
Found at i:97144534 original size:8 final size:8
Alignment explanation
Indices: 97144510--97144558 Score: 66
Period size: 8 Copynumber: 6.2 Consensus size: 8
97144500 CCTTGGCCTC
97144510 TCCATTTT
1 TCCATTTT
*
97144518 TCCTCTTTT
1 TCC-ATTTT
97144527 TCCATTTT
1 TCCATTTT
97144535 TCCA-TTT
1 TCCATTTT
97144542 TCCA-TTT
1 TCCATTTT
97144549 TCCATTTT
1 TCCATTTT
97144557 TC
1 TC
97144559 TTTTCTCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
7 14 0.38
8 16 0.43
9 7 0.19
ACGTcount: A:0.10, C:0.29, G:0.00, T:0.61
Consensus pattern (8 bp):
TCCATTTT
Found at i:97144542 original size:7 final size:7
Alignment explanation
Indices: 97144524--97144556 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
97144514 TTTTTCCTCT
97144524 TTTTCCA
1 TTTTCCA
97144531 TTTTTCCA
1 -TTTTCCA
97144539 TTTTCCA
1 TTTTCCA
97144546 TTTTCCA
1 TTTTCCA
97144553 TTTT
1 TTTT
97144557 TCTTTTCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTCCA
Found at i:97144558 original size:15 final size:15
Alignment explanation
Indices: 97144510--97144556 Score: 60
Period size: 14 Copynumber: 3.1 Consensus size: 15
97144500 CCTTGGCCTC
*
97144510 TCCATTTTTCCTCTTTT
1 TCCATTTTT-C-CATTT
97144527 TCCATTTTTCCATTT
1 TCCATTTTTCCATTT
97144542 TCCA-TTTTCCATTT
1 TCCATTTTTCCATTT
97144556 T
1 T
97144557 TCTTTTCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 11 0.38
15 8 0.28
16 1 0.03
17 9 0.31
ACGTcount: A:0.11, C:0.28, G:0.00, T:0.62
Consensus pattern (15 bp):
TCCATTTTTCCATTT
Found at i:97150940 original size:19 final size:19
Alignment explanation
Indices: 97150893--97150972 Score: 110
Period size: 19 Copynumber: 4.3 Consensus size: 19
97150883 CATATCCTAT
97150893 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
97150912 --TATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
*
97150929 CATATCACATCTAAGATTG
1 CATATCATATCTAAGATTG
* *
97150948 CATATCAAATCTAAAATTG
1 CATATCATATCTAAGATTG
*
97150967 TATATC
1 CATATC
97150973 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
17 17 0.31
19 38 0.69
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:97152170 original size:32 final size:30
Alignment explanation
Indices: 97152096--97152177 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
97152086 GTATACAATT
* *
97152096 GTAACATAAATATTTAATTACTTTTTATTTAA
1 GTAA-ATAGATATTT-ATTACTTATTATTTAA
97152128 GTAAATAGATATTTATTACTTATTATTATTAA
1 GTAAATAGATATTTATTACTTATTA-T-TTAA
97152160 GTTAAA-AGATATTTATTA
1 G-TAAATAGATATTTATTA
97152178 ATTAAATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 10 0.22
31 10 0.22
32 21 0.47
33 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (30 bp):
GTAAATAGATATTTATTACTTATTATTTAA
Found at i:97153576 original size:21 final size:21
Alignment explanation
Indices: 97153550--97153609 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
97153540 ATTGCCGAGC
* *
97153550 AGGCACTTTATGTGTTGTTTT
1 AGGCACTTTATGTGTCGTTCT
* *
97153571 AGGCACCTTGTGTGTCGTTCT
1 AGGCACTTTATGTGTCGTTCT
97153592 AGGCACTTTATGTGTCGT
1 AGGCACTTTATGTGTCGT
97153610 ATACTGCTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.13, C:0.17, G:0.27, T:0.43
Consensus pattern (21 bp):
AGGCACTTTATGTGTCGTTCT
Found at i:97156715 original size:72 final size:71
Alignment explanation
Indices: 97156581--97156781 Score: 226
Period size: 72 Copynumber: 2.8 Consensus size: 71
97156571 ATTAATCGGT
* * * * *
97156581 TATCCAGTAACAGTCAATTATTCCGTAAAATCAGA-TATTCAGTAACTATTAAGTTATTCAGTAG
1 TATCCAGTAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTCAGTTATACAGTAA
*
97156645 CAGTC-AT
64 CAGTCTAA
* * *
97156652 TCATTCAGTGACAATCAGTTATTCAGTAATAATCAATTATTCAGTAATATTCAGTTATACAGTAA
1 T-ATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATACAGTAA
97156717 CAGTCTAA
64 CAGTCTAA
* * * *
97156725 TATCCAGTAACAGTCAATTATCCAGTAACAGTCAATTATTCAGTAATAATCAGTTAT
1 TATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTAT
97156782 TTTATACCTT
Statistics
Matches: 109, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
71 1 0.01
72 91 0.83
73 17 0.16
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (71 bp):
TATCCAGTAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTCAGTTATACAGTAACA
GTCTAA
Found at i:97156781 original size:18 final size:18
Alignment explanation
Indices: 97156500--97156782 Score: 158
Period size: 18 Copynumber: 15.3 Consensus size: 18
97156490 GAATAATTAT
*
97156500 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAG
* *
97156518 TTATTCAGTAACAATAAA
1 TTATTCAGTAACAATCAG
* * *
97156536 TTATTCAATAATAACCAG
1 TTATTCAGTAACAATCAG
* *
97156554 TTATTCAATATCGATCAATTAATCGG
1 TTATTC---A--G-T-AA-CAATCAG
* * *
97156580 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
*
97156598 TTATTCCGTAA-AATCAG
1 TTATTCAGTAACAATCAG
* * *
97156615 ATATTCAGTAACTATTAAG
1 TTATTCAGTAAC-AATCAG
* *
97156634 TTATTCAGTAGCAGTCA-
1 TTATTCAGTAACAATCAG
*
97156651 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAG
* *
97156670 TTATTCAGTAATAATCAA
1 TTATTCAGTAACAATCAG
* *
97156688 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAG
* *
97156706 TTATACAGTAACAGTCTA-
1 TTATTCAGTAACAATC-AG
* * * *
97156724 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
* * *
97156742 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
*
97156760 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAG
97156778 TTATT
1 TTATT
97156783 TTATACCTTT
Statistics
Matches: 205, Mismatches: 46, Indels: 28
0.73 0.16 0.10
Matches are distributed among these distances:
17 16 0.08
18 153 0.75
19 19 0.09
20 1 0.00
21 2 0.01
23 1 0.00
24 1 0.00
25 2 0.01
26 10 0.05
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:97157005 original size:45 final size:45
Alignment explanation
Indices: 97156956--97157207 Score: 306
Period size: 45 Copynumber: 5.5 Consensus size: 45
97156946 ATCTGGAATA
* * * *
97156956 GTAACAGTAACAGTAACATTATTCAACACACAAAGTACTGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
97157001 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* * * * *
97157046 GTAGCGGTAACAGTAACAATATTCAACACACACAGTGCCAAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* *
97157091 GTAACGGTAACGGTAACAGTAACAATATTCGACACACACAGTGCCAAATCG
1 GTAAC----A--GTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* *
97157142 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGACGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* *
97157187 GTAACAGTAGCAGTAGCAATA
1 GTAACAGTAACAGTAACAATA
97157208 ACAGTAACTA
Statistics
Matches: 182, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
45 139 0.76
51 43 0.24
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:97157210 original size:96 final size:94
Alignment explanation
Indices: 97156956--97157197 Score: 323
Period size: 96 Copynumber: 2.6 Consensus size: 94
97156946 ATCTGGAATA
* *
97156956 GTAACAGTAACAGTAACATTATTCAACACACAAAGT-ACTGAATCGGTAAC---G-GTAACAGTA
1 GTAACGGTAACAGTAACAATATTCAACACACAAAGTGAC-GAATCGGTAACGTAGCGTAACAGTA
*
97157016 ACAATATTCGACACACAAAGTGCCGAATCG
65 ACAATATTCGACACACAAAGTGCCAAATCG
* * * * *
97157046 GTAGCGGTAACAGTAACAATATTCAACACACACAGTGCCAAATCGGTAACGGTAACGGTAACAGT
1 GTAACGGTAACAGTAACAATATTCAACACACAAAGTGACGAATCGGTAAC-GTAGC-GTAACAGT
*
97157111 AACAATATTCGACACACACAGTGCCAAATCG
64 AACAATATTCGACACACAAAGTGCCAAATCG
*
97157142 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGACGAATCGGTAACAGTAGC
1 GTAACGGTAACAGTAACAATATTCAACACACAAAGTGACGAATCGGTAAC-GTAGC
97157198 AGTAGCAATA
Statistics
Matches: 129, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
90 42 0.33
91 1 0.01
96 86 0.67
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (94 bp):
GTAACGGTAACAGTAACAATATTCAACACACAAAGTGACGAATCGGTAACGTAGCGTAACAGTAA
CAATATTCGACACACAAAGTGCCAAATCG
Found at i:97157621 original size:5 final size:5
Alignment explanation
Indices: 97157610--97157651 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
97157600 AATTAATCAT
* *
97157610 AATTC CATTC CATTC AATTC AATTC AATTC AATTC AAATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC A
97157652 CCCTTCAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:97162711 original size:71 final size:73
Alignment explanation
Indices: 97162551--97162711 Score: 168
Period size: 73 Copynumber: 2.2 Consensus size: 73
97162541 AAAAAAAGAG
* * * *
97162551 ATTCCCATTAAATATCTTTTCCTTTTAAATAATTTTTGAAAAAGTTGTTATCAAATTTTAAAATT
1 ATTCCCATTAAATATTTTTTCCTTTTAAATAATTTTTGAAAAAGTTATCATCAAACTTTAAAATT
**
97162616 TTCAGTTA
66 CCCAGTTA
* * * * *
97162624 ATTCTCATCAAATATTTTTTTC-TTTAAATATATTTTTTAAAAA-TTATCA-GAAACTTTATAAA
1 ATTCCCATTAAATATTTTTTCCTTTTAAATA-ATTTTTGAAAAAGTTATCATCAAACTTTA-AAA
*
97162686 -TCCCATTTA
64 TTCCCAGTTA
97162695 ATTCCCATTAAATATTT
1 ATTCCCATTAAATATTT
97162712 ATTTAAAAGT
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
71 28 0.39
72 15 0.21
73 29 0.40
ACGTcount: A:0.37, C:0.12, G:0.03, T:0.48
Consensus pattern (73 bp):
ATTCCCATTAAATATTTTTTCCTTTTAAATAATTTTTGAAAAAGTTATCATCAAACTTTAAAATT
CCCAGTTA
Found at i:97162879 original size:16 final size:17
Alignment explanation
Indices: 97162860--97162897 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
97162850 TAATTTTCCA
97162860 TTAAATA-TTTT-TTTAT
1 TTAAATAGTTTTATTT-T
97162876 TTAAATAGTTTTATTTT
1 TTAAATAGTTTTATTTT
97162893 TTAAA
1 TTAAA
97162898 AATTGTCACC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 10 0.50
18 3 0.15
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (17 bp):
TTAAATAGTTTTATTTT
Found at i:97163299 original size:13 final size:14
Alignment explanation
Indices: 97163270--97163304 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
97163260 TTTTTTATTT
97163270 AAAAATGTGACATAA
1 AAAAAT-TGACATAA
97163285 AAAAATTGACA-AA
1 AAAAATTGACATAA
97163298 AAAAATT
1 AAAAATT
97163305 AACGATGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 9 0.45
14 5 0.25
15 6 0.30
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.20
Consensus pattern (14 bp):
AAAAATTGACATAA
Found at i:97163466 original size:15 final size:15
Alignment explanation
Indices: 97163446--97163499 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
97163436 ATACTACAAA
97163446 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
97163461 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
97163478 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
97163495 ATATT
1 ATATT
97163500 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:97163557 original size:16 final size:16
Alignment explanation
Indices: 97163526--97163562 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
97163516 AATATTCACA
97163526 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
97163542 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
97163558 TATTA
1 TATTA
97163563 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:97163613 original size:22 final size:22
Alignment explanation
Indices: 97163587--97163630 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
97163577 TATTTAAATA
97163587 ATTTATTAAAATAATAAATTAT
1 ATTTATTAAAATAATAAATTAT
* * *
97163609 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAAATTAT
97163631 TATATGACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTATTAAAATAATAAATTAT
Found at i:97165197 original size:13 final size:12
Alignment explanation
Indices: 97165164--97165235 Score: 72
Period size: 12 Copynumber: 5.6 Consensus size: 12
97165154 TTCACATAAC
97165164 TTTTCTTTTTATTT
1 TTTTC-TTTT-TTT
97165178 ATTTTCTTTCTTTT
1 -TTTTCTTT-TTTT
* *
97165192 TTTTCTGTCTTT
1 TTTTCTTTTTTT
*
97165204 TTTTGTTTTTTT
1 TTTTCTTTTTTT
97165216 TTTTCTTTTTTT
1 TTTTCTTTTTTT
97165228 TTTCTCTT
1 TTT-TCTT
97165236 CTTCTCAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
12 26 0.53
13 11 0.22
14 6 0.12
15 6 0.12
ACGTcount: A:0.03, C:0.11, G:0.03, T:0.83
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:97165204 original size:37 final size:36
Alignment explanation
Indices: 97165163--97165238 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
97165153 ATTCACATAA
97165163 CTTTTCTTT-TTATTTATTTTCTTTCTTTTTTT-TCTGT
1 CTTTT-TTTGTTATTTATTTTCTTT-TTTTTTTCTCT-T
* *
97165200 CTTTTTTTGTTTTTTTTTTTCTTTTTTTTTTCTCTT
1 CTTTTTTTGTTATTTATTTTCTTTTTTTTTTCTCTT
97165236 CTT
1 CTT
97165239 CTCAATTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 14 0.40
37 21 0.60
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.82
Consensus pattern (36 bp):
CTTTTTTTGTTATTTATTTTCTTTTTTTTTTCTCTT
Found at i:97165212 original size:20 final size:20
Alignment explanation
Indices: 97165189--97165227 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
97165179 TTTTCTTTCT
97165189 TTTTTTTCTGTCTTTTTTTG
1 TTTTTTTCTGTCTTTTTTTG
* *
97165209 TTTTTTTTTTTCTTTTTTT
1 TTTTTTTCTGTCTTTTTTT
97165228 TTTCTCTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.05, T:0.87
Consensus pattern (20 bp):
TTTTTTTCTGTCTTTTTTTG
Found at i:97171228 original size:26 final size:26
Alignment explanation
Indices: 97171190--97171242 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
97171180 GAGATTTTAA
*
97171190 AAAAATAATAATAATTAA-ATTTAATT
1 AAAAATAATAAT-ATTAACATATAATT
97171216 AAAAAT-ATAAATATTAACATATAATT
1 AAAAATAAT-AATATTAACATATAATT
97171242 A
1 A
97171243 TAATTACATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (26 bp):
AAAAATAATAATATTAACATATAATT
Found at i:97172142 original size:26 final size:26
Alignment explanation
Indices: 97172105--97172188 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
97172095 TGATACAAAT
* *
97172105 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97172131 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97172157 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97172183 TGATAA
1 TGATAA
97172189 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:97179153 original size:26 final size:26
Alignment explanation
Indices: 97179116--97179199 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
97179106 TGATACAAAT
* *
97179116 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97179142 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97179168 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97179194 TGATAA
1 TGATAA
97179200 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:97183935 original size:12 final size:12
Alignment explanation
Indices: 97183918--97183942 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97183908 CACAACGTGC
97183918 ATGGTATTAAAA
1 ATGGTATTAAAA
97183930 ATGGTATTAAAA
1 ATGGTATTAAAA
97183942 A
1 A
97183943 ACATGATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:97184209 original size:12 final size:12
Alignment explanation
Indices: 97184192--97184219 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
97184182 TATATGAAAT
97184192 TAATTAGTTTAA
1 TAATTAGTTTAA
97184204 TAATTAGTTTAA
1 TAATTAGTTTAA
97184216 TAAT
1 TAAT
97184220 AAGATGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (12 bp):
TAATTAGTTTAA
Found at i:97186309 original size:37 final size:37
Alignment explanation
Indices: 97186248--97186541 Score: 493
Period size: 37 Copynumber: 8.0 Consensus size: 37
97186238 TACGTATGAT
* *
97186248 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
97186283 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97186320 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
97186357 CACCTATCACATTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97186394 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
97186431 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97186468 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
97186505 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97186542 TAAAGCTATC
Statistics
Matches: 243, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
35 9 0.04
36 3 0.01
37 231 0.95
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:97186584 original size:52 final size:52
Alignment explanation
Indices: 97186505--97186721 Score: 284
Period size: 52 Copynumber: 4.2 Consensus size: 52
97186495 TAAGTGTAGC
* * *
97186505 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
*
97186558 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
97186610 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
97186656 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
97186708 CACTTTGTCACTTG
1 CACTTT-TCACTTG
97186722 ATCAGAAGTA
Statistics
Matches: 144, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 43 0.30
49 1 0.01
52 84 0.58
53 16 0.11
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
Found at i:97186627 original size:46 final size:46
Alignment explanation
Indices: 97186555--97186727 Score: 231
Period size: 46 Copynumber: 3.7 Consensus size: 46
97186545 AGCTATCACT
*
97186555 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
97186600 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* **
97186646 TATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
97186698 TACCACTTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCACTTTGTCACTTGATCAGA
97186728 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
45 12 0.11
46 59 0.52
48 1 0.01
50 1 0.01
52 40 0.35
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:97186646 original size:98 final size:98
Alignment explanation
Indices: 97186504--97186727 Score: 358
Period size: 98 Copynumber: 2.3 Consensus size: 98
97186494 ATAAGTGTAG
* * * * *
97186504 CCACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
97186569 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
* * *
97186602 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
97186667 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
97186700 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
97186728 AGTACTCAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 115 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
Found at i:97189905 original size:49 final size:50
Alignment explanation
Indices: 97189850--97190053 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
97189840 TTCGTTTTCT
*
97189850 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
97189899 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
97189948 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
97190006 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
97190054 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:97190020 original size:58 final size:59
Alignment explanation
Indices: 97189934--97190052 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
97189924 TACACGAAAT
97189934 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
97189992 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
97190051 CA
1 CA
97190053 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:97190033 original size:28 final size:28
Alignment explanation
Indices: 97189943--97190033 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
97189933 TCACATATCA
97189943 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
97189971 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
97190001 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
97190029 CTTAC
1 CTTAC
97190034 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:97191368 original size:37 final size:37
Alignment explanation
Indices: 97191307--97191526 Score: 372
Period size: 37 Copynumber: 6.0 Consensus size: 37
97191297 TACGTATGAT
* *
97191307 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
97191342 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97191379 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
97191416 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97191453 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
97191490 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97191527 TAAAGCTATC
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.05
36 3 0.02
37 163 0.93
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:97191569 original size:52 final size:52
Alignment explanation
Indices: 97191490--97191706 Score: 284
Period size: 52 Copynumber: 4.2 Consensus size: 52
97191480 TAAGTGTAGC
* * *
97191490 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
*
97191543 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
97191595 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
97191641 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
97191693 CACTTTGTCACTTG
1 CACTTT-TCACTTG
97191707 ATCAGAAGTA
Statistics
Matches: 144, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 43 0.30
49 1 0.01
52 84 0.58
53 16 0.11
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
Found at i:97191612 original size:46 final size:46
Alignment explanation
Indices: 97191540--97191712 Score: 231
Period size: 46 Copynumber: 3.7 Consensus size: 46
97191530 AGCTATCACT
*
97191540 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
97191585 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* **
97191631 TATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
97191683 TACCACTTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCACTTTGTCACTTGATCAGA
97191713 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
45 12 0.11
46 59 0.52
48 1 0.01
50 1 0.01
52 40 0.35
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:97191631 original size:98 final size:98
Alignment explanation
Indices: 97191489--97191712 Score: 358
Period size: 98 Copynumber: 2.3 Consensus size: 98
97191479 ATAAGTGTAG
* * * * *
97191489 CCACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
97191554 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
* * *
97191587 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
97191652 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
97191685 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
97191713 AGTACTCAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 115 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
Found at i:97197689 original size:37 final size:40
Alignment explanation
Indices: 97197646--97197721 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
97197636 GTTGATAAGT
97197646 GCTGGGTACAA-AT-TTTACTTC-GATTATACTGATGAGC
1 GCTGGGTACAATATATTTACTTCAGATTATACTGATGAGC
* * *
97197683 GCTGGGTACAATTTATTTACTTCAGATTTTTCTGATGAG
1 GCTGGGTACAATATATTTACTTCAGATTATACTGATGAG
97197722 ACACTAGGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 11 0.33
38 1 0.03
39 8 0.24
40 13 0.39
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (40 bp):
GCTGGGTACAATATATTTACTTCAGATTATACTGATGAGC
Found at i:97199376 original size:28 final size:28
Alignment explanation
Indices: 97199334--97199389 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
97199324 ACTACATCTA
*
97199334 TTTAAAGTTTGAAAAATATTATTTTAAT
1 TTTAAAGTTTAAAAAATATTATTTTAAT
97199362 TTTAAAGTTTAAAAAATATTATTTTAAT
1 TTTAAAGTTTAAAAAATATTATTTTAAT
97199390 CAATGTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (28 bp):
TTTAAAGTTTAAAAAATATTATTTTAAT
Found at i:97218142 original size:22 final size:23
Alignment explanation
Indices: 97218117--97218165 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
97218107 AAAAACATAA
97218117 ACAGAAT-ATATCAG-GTACAGAT
1 ACAGAATCATATCAGAG-ACAGAT
97218139 ACAG-ATCATATCAGAGACAGAT
1 ACAGAATCATATCAGAGACAGAT
*
97218161 GCAGA
1 ACAGA
97218166 TTCCCTACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 2 0.09
22 20 0.87
23 1 0.04
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.18
Consensus pattern (23 bp):
ACAGAATCATATCAGAGACAGAT
Found at i:97218166 original size:22 final size:22
Alignment explanation
Indices: 97218124--97218166 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
97218114 TAAACAGAAT
97218124 ATATCAGGTACAGATACAGATC
1 ATATCAGGTACAGATACAGATC
*
97218146 ATATCAGAG-ACAGATGCAGAT
1 ATATCAG-GTACAGATACAGAT
97218167 TCCCTACCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21
Consensus pattern (22 bp):
ATATCAGGTACAGATACAGATC
Found at i:97218355 original size:2 final size:2
Alignment explanation
Indices: 97218350--97218383 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
97218340 TATATATATA
97218350 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
97218384 GCTTAGCCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:97219593 original size:24 final size:27
Alignment explanation
Indices: 97219546--97219597 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 27
97219536 ATGGGGAGCC
97219546 AAAATAAAAGAAGAAGAGAAGAGAAAA
1 AAAATAAAAGAAGAAGAGAAGAGAAAA
*
97219573 AAAAT-AAAG-AGAA-AGAGGAGAAAA
1 AAAATAAAAGAAGAAGAGAAGAGAAAA
97219597 A
1 A
97219598 GAGGGAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 11 0.46
25 4 0.17
26 4 0.17
27 5 0.21
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.04
Consensus pattern (27 bp):
AAAATAAAAGAAGAAGAGAAGAGAAAA
Found at i:97220487 original size:13 final size:13
Alignment explanation
Indices: 97220469--97220501 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
97220459 TCTACACTGT
97220469 CATGTGAACAGGC
1 CATGTGAACAGGC
97220482 CATGTG-ACAGGC
1 CATGTGAACAGGC
*
97220494 CGTGTGAA
1 CATGTGAA
97220502 GCATAGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.27, C:0.21, G:0.33, T:0.18
Consensus pattern (13 bp):
CATGTGAACAGGC
Found at i:97221492 original size:41 final size:41
Alignment explanation
Indices: 97221334--97221495 Score: 103
Period size: 41 Copynumber: 4.0 Consensus size: 41
97221324 TTAATATAGA
* * * * * *
97221334 CACGAAGCCTACAAGGCTGAAGGCTTGATTCGATACACCGA
1 CACGAAGCCTACTAGGCTCAAGGCTCGATACAATACACCGG
* * * * * * *
97221375 CATGAAGCCAACTAGGTTTAAGGAC-CAACACGATACACCGG
1 CACGAAGCCTACTAGGCTCAAGG-CTCGATACAATACACCGG
* * ** * * * *
97221416 TACAAAGATTTCTAGCCTCTAGGCAT-GATAGAATACACCGG
1 CACGAAGCCTACTAGGCTCAAGGC-TCGATACAATACACCGG
97221457 CACGAAGCCTACTAGGCTCAAGGCTCGATACAATACACC
1 CACGAAGCCTACTAGGCTCAAGGCTCGATACAATACACC
97221496 TAACACATTT
Statistics
Matches: 84, Mismatches: 33, Indels: 8
0.67 0.26 0.06
Matches are distributed among these distances:
40 2 0.02
41 81 0.96
42 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (41 bp):
CACGAAGCCTACTAGGCTCAAGGCTCGATACAATACACCGG
Found at i:97223821 original size:14 final size:16
Alignment explanation
Indices: 97223802--97223835 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
97223792 CTCCCGGCTT
97223802 ATAATGG-AACTCT-G
1 ATAATGGTAACTCTAG
97223816 ATAATGGTAACTCTAG
1 ATAATGGTAACTCTAG
97223832 ATAA
1 ATAA
97223836 ATATATAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 6 0.33
16 5 0.28
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (16 bp):
ATAATGGTAACTCTAG
Found at i:97224412 original size:14 final size:13
Alignment explanation
Indices: 97224372--97224413 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
97224362 TCATTTACTA
97224372 ATATTTAACATTT
1 ATATTTAACATTT
*
97224385 -TATTTAAACCTTT
1 ATATTT-AACATTT
97224398 ATATTATAACATTT
1 ATATT-TAACATTT
97224412 AT
1 AT
97224414 TCAGGTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
12 5 0.21
13 6 0.25
14 12 0.50
15 1 0.04
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATTTAACATTT
Found at i:97224987 original size:17 final size:17
Alignment explanation
Indices: 97224943--97224987 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
97224933 TTTCTTTTCC
97224943 TTTCTTTCCTTTTCTTT
1 TTTCTTTCCTTTTCTTT
* * *
97224960 CTTCCTACCTTTTCTTT
1 TTTCTTTCCTTTTCTTT
97224977 TTTCTTTCCTT
1 TTTCTTTCCTT
97224988 CCTTCCCCCT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTCTTTCCTTTTCTTT
Found at i:97236948 original size:10 final size:10
Alignment explanation
Indices: 97236933--97236964 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
97236923 TAAATACATT
97236933 TAATTAAAGA
1 TAATTAAAGA
97236943 TAATTAAAGA
1 TAATTAAAGA
97236953 TAATTAAA-A
1 TAATTAAAGA
97236962 TAA
1 TAA
97236965 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:97237062 original size:5 final size:5
Alignment explanation
Indices: 97237014--97237043 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
97237004 TAATTATCCT
97237014 AATATA AATAA AATAA AATAA AATAA AATA
1 AATA-A AATAA AATAA AATAA AATAA AATA
97237044 GAGTCTTCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:97250128 original size:17 final size:17
Alignment explanation
Indices: 97250106--97250140 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
97250096 TTCAACATAG
97250106 TGAATTTTCTTCTCCTC
1 TGAATTTTCTTCTCCTC
97250123 TGAATTTTCTTCTCCTC
1 TGAATTTTCTTCTCCTC
97250140 T
1 T
97250141 TTCCCTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.29, G:0.06, T:0.54
Consensus pattern (17 bp):
TGAATTTTCTTCTCCTC
Found at i:97251390 original size:10 final size:9
Alignment explanation
Indices: 97251354--97251393 Score: 53
Period size: 10 Copynumber: 4.1 Consensus size: 9
97251344 GTTAATGATT
97251354 AATTAATTAA
1 AATTAATT-A
97251364 AACTTAATTA
1 AA-TTAATTA
97251374 AATTAATTA
1 AATTAATTA
97251383 AGATTAATTA
1 A-ATTAATTA
97251393 A
1 A
97251394 CTTATAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 14 0.50
11 6 0.21
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (9 bp):
AATTAATTA
Found at i:97258513 original size:18 final size:18
Alignment explanation
Indices: 97258486--97258520 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97258476 ACTTAGTCGG
*
97258486 TTTCTTCTTTCCTTTAGC
1 TTTCTGCTTTCCTTTAGC
*
97258504 TTTCTGCTTTCTTTTAG
1 TTTCTGCTTTCCTTTAG
97258521 AGGATAAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.23, G:0.09, T:0.63
Consensus pattern (18 bp):
TTTCTGCTTTCCTTTAGC
Found at i:97263770 original size:17 final size:17
Alignment explanation
Indices: 97263748--97263800 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
97263738 ACCATTTTCT
97263748 GTTAAAAAGAAAAAAAA
1 GTTAAAAAGAAAAAAAA
*
97263765 GTTAAAAACGGAAAAAAA
1 GTTAAAAA-GAAAAAAAA
97263783 --TAAAAAGCTAAAAAAAA
1 GTTAAAAAG--AAAAAAAA
97263800 G
1 G
97263801 AGATTGTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 1 0.03
16 6 0.20
17 15 0.50
18 8 0.27
ACGTcount: A:0.72, C:0.04, G:0.13, T:0.11
Consensus pattern (17 bp):
GTTAAAAAGAAAAAAAA
Found at i:97264608 original size:151 final size:152
Alignment explanation
Indices: 97264360--97264675 Score: 535
Period size: 151 Copynumber: 2.1 Consensus size: 152
97264350 ATTTTTAAAG
* * * * * *
97264360 TTTTTAAAATTTTTAGATTTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTA
1 TTTTTAAAATTTTCAAATCTTATTTTTTAAAATATACTATTTTCCTATTTTATTATTTTATATTA
*
97264425 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAATAAATAACCC
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAATATTTTTTATATTAATTTAATAAATAACCC
* *
97264490 TAATTTTGTCCCTTTGTTTGTA
131 TAATTTTATCCCTTTATTTGTA
97264512 TTTTTAAAATTTTCAAATCTTATTTTTTAAAATATACTATTTTCCTATTTT-TTATTTTATATTA
1 TTTTTAAAATTTTCAAATCTTATTTTTTAAAATATACTATTTTCCTATTTTATTATTTTATATTA
97264576 TTTTAGTACATAATGTTTCAAATGTATTATTTTAATATTTTTTATATTAATTTAATAAATAACCC
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAATATTTTTTATATTAATTTAATAAATAACCC
*
97264641 TAATTTTATCCTTTTATTTGTA
131 TAATTTTATCCCTTTATTTGTA
97264663 TTTTTAAAATTTT
1 TTTTTAAAATTTT
97264676 GGATCTAGAT
Statistics
Matches: 154, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
151 108 0.70
152 46 0.30
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (152 bp):
TTTTTAAAATTTTCAAATCTTATTTTTTAAAATATACTATTTTCCTATTTTATTATTTTATATTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAATATTTTTTATATTAATTTAATAAATAACCC
TAATTTTATCCCTTTATTTGTA
Found at i:97266605 original size:25 final size:23
Alignment explanation
Indices: 97266553--97266601 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
97266543 AATGAAAATT
97266553 TCTTTCCCCCCGAATAAAAGAAG
1 TCTTTCCCCCCGAATAAAAGAAG
*
97266576 TCTTTCCCCCCGAATGAAAGAAG
1 TCTTTCCCCCCGAATAAAAGAAG
97266599 TCT
1 TCT
97266602 CTTTGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (23 bp):
TCTTTCCCCCCGAATAAAAGAAG
Found at i:97267917 original size:18 final size:18
Alignment explanation
Indices: 97267890--97267982 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
97267880 TACGACCGTT
97267890 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
97267908 TACGGCACTATTCACATA
1 TACGGTACTATTCACGTA
*
97267926 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
97267944 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
97267962 TACGGTACTGTTCACTTA
1 TACGGTACTATTCACGTA
97267980 TAC
1 TAC
97267983 AGTAGTTGGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:97276115 original size:20 final size:20
Alignment explanation
Indices: 97276092--97276148 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
97276082 TTTTATTTAT
97276092 AATTTTAAATTTTTAAAAAA
1 AATTTTAAATTTTTAAAAAA
** * *
97276112 AATTTTAAAAATTTAACATA
1 AATTTTAAATTTTTAAAAAA
*
97276132 ATTTTTAATATTTTTAA
1 AATTTTAA-ATTTTTAA
97276149 TAATTTATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 23 0.79
21 6 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
AATTTTAAATTTTTAAAAAA
Found at i:97276151 original size:19 final size:20
Alignment explanation
Indices: 97276129--97276168 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
97276119 AAAATTTAAC
*
97276129 ATAATTTTTA-ATATTTTTA
1 ATAATTTATATATATTTTTA
*
97276148 ATAATTTATATTTATTTTTA
1 ATAATTTATATATATTTTTA
97276168 A
1 A
97276169 GATTCTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATAATTTATATATATTTTTA
Found at i:97279018 original size:48 final size:48
Alignment explanation
Indices: 97278947--97279134 Score: 243
Period size: 48 Copynumber: 3.9 Consensus size: 48
97278937 CTTACACTGT
* * * *
97278947 CGATGCTACGTCCTAGACATGGTCTTACACTAGCGCACCTATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGC
* * * ***
97278995 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACAT-ATCAACGC
* *
97279043 CGATGCTATGACCCAGACATGGTCTTACACTAGCGCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGC
*
97279091 CGATGCCATGTCCCAGACATGGTTTTACACTAGCGCACATATCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCA
97279135 CCCCAATGTC
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
47 2 0.02
48 113 0.97
49 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.24
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGC
Found at i:97279059 original size:129 final size:129
Alignment explanation
Indices: 97278835--97279073 Score: 352
Period size: 129 Copynumber: 1.9 Consensus size: 129
97278825 ATGTCCCAAG
* * * * * * *
97278835 CATGGTCTTAAACTAGCTCTCGTCTCAATGCCAATACCATGTTCTAGACATGGTCTTACACTGGC
1 CATGGTCTTAAACTAGCGCACCTATCAACGCCAATACCATGTCCCAGACATGGTCTTACACTGGC
* **
97278900 TCTCGTAATGTGGCCGATGCCATGTTCCAGACATGGTCTTACACTGTCGATGCTACGTCCTAGA
66 TCTCATAATGTGGCCGATGCCATGACCCAGACATGGTCTTACACTGTCGATGCTACGTCCTAGA
* * *
97278964 CATGGTCTTACACTAGCGCACCTATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 CATGGTCTTAAACTAGCGCACCTATCAACGCCAATACCATGTCCCAGACATGGTCTTACACTGGC
*
97279029 TCTCATAATGTGGCCGATGCTATGACCCAGACATGGTCTTACACT
66 TCTCATAATGTGGCCGATGCCATGACCCAGACATGGTCTTACACT
97279074 AGCGCACATA
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
129 96 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (129 bp):
CATGGTCTTAAACTAGCGCACCTATCAACGCCAATACCATGTCCCAGACATGGTCTTACACTGGC
TCTCATAATGTGGCCGATGCCATGACCCAGACATGGTCTTACACTGTCGATGCTACGTCCTAGA
Found at i:97279111 original size:96 final size:96
Alignment explanation
Indices: 97278947--97279121 Score: 305
Period size: 96 Copynumber: 1.8 Consensus size: 96
97278937 CTTACACTGT
* * *
97278947 CGATGCTACGTCCTAGACATGGTCTTACACTAGCGCACCTATCAACGCCGATGCCATGTCCCAGA
1 CGATGCTACGACCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAGA
97279012 CATGGTCTTACACTGGCTCTCATAATGTGGC
66 CATGGTCTTACACTGGCTCTCATAATGTGGC
*
97279043 CGATGCTATGACCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAGA
1 CGATGCTACGACCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAGA
*
97279108 CATGGTTTTACACT
66 CATGGTCTTACACT
97279122 AGCGCACATA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (96 bp):
CGATGCTACGACCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGGCTCTCATAATGTGGC
Found at i:97279483 original size:29 final size:30
Alignment explanation
Indices: 97279451--97279507 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
97279441 ATAATTCATA
97279451 TTTTA-AAAATGATC-ATTTTACCCCTAGAC
1 TTTTACAAAATGA-CGATTTTACCCCTAGAC
97279480 TTTTACAAAATGACGATTTTACCCCTAG
1 TTTTACAAAATGACGATTTTACCCCTAG
97279508 GCTCGTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (30 bp):
TTTTACAAAATGACGATTTTACCCCTAGAC
Found at i:97280450 original size:5 final size:6
Alignment explanation
Indices: 97280436--97280460 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
97280426 TTTAAACACA
97280436 TTTTAT TTTTAT TTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT T
97280461 GAAAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:97285359 original size:22 final size:23
Alignment explanation
Indices: 97285311--97285359 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
97285301 TTTATTTTAA
* * *
97285311 AATATATTTACAATAAATATTAG
1 AATATATTTAAAATAAATATGAC
*
97285334 AATATA-TTAAAATAAGTATGAC
1 AATATATTTAAAATAAATATGAC
97285356 AATA
1 AATA
97285360 AACATATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (23 bp):
AATATATTTAAAATAAATATGAC
Found at i:97288904 original size:18 final size:18
Alignment explanation
Indices: 97288871--97288905 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97288861 TCATCATTAA
*
97288871 AAAGTTATTTACTTTCAG
1 AAAGTTATTAACTTTCAG
*
97288889 AAAGTTATTAATTTTCA
1 AAAGTTATTAACTTTCA
97288906 AAATATCACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (18 bp):
AAAGTTATTAACTTTCAG
Found at i:97302671 original size:17 final size:17
Alignment explanation
Indices: 97302651--97302706 Score: 75
Period size: 17 Copynumber: 3.5 Consensus size: 17
97302641 TTTCTTTTTG
97302651 TTTTATTTTCATATTTC
1 TTTTATTTTCATATTTC
*
97302668 TTTT-GTTT--T-TTTC
1 TTTTATTTTCATATTTC
97302681 TTTTATTTTCATATTTC
1 TTTTATTTTCATATTTC
97302698 TTTTATTTT
1 TTTTATTTT
97302707 ACTTTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
13 8 0.24
14 4 0.12
16 4 0.12
17 17 0.52
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTATTTTCATATTTC
Found at i:97302685 original size:30 final size:29
Alignment explanation
Indices: 97302645--97302719 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 29
97302635 TTTTGTTTTC
* *
97302645 TTTTTGTTTTATTTTCATATTTCTTTTGT
1 TTTTTTTTTTATTTTCATATTTCTTTTAT
97302674 TTTTTTCTTTTATTTTCATATTTCTTTTAT
1 TTTTTT-TTTTATTTTCATATTTCTTTTAT
*
97302704 TTTACTTTTTTATTTT
1 TTT-TTTTTTTATTTT
97302720 GTTCCTTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 5 0.12
30 34 0.83
31 2 0.05
ACGTcount: A:0.12, C:0.08, G:0.03, T:0.77
Consensus pattern (29 bp):
TTTTTTTTTTATTTTCATATTTCTTTTAT
Found at i:97302974 original size:14 final size:14
Alignment explanation
Indices: 97302957--97302983 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97302947 TTTTTTAAAA
97302957 TTTTAAATATTAAT
1 TTTTAAATATTAAT
97302971 TTTTAAATATTAA
1 TTTTAAATATTAA
97302984 CCATATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTTAAATATTAAT
Found at i:97302983 original size:37 final size:37
Alignment explanation
Indices: 97302841--97302983 Score: 129
Period size: 37 Copynumber: 4.0 Consensus size: 37
97302831 TTTATAATAC
* *
97302841 TTTTTTAAAATTTTAATTA-T-TATTTTTAAAAAT-A
1 TTTTTTAAAATTTTAAATATTATATTTTTAAAATTAA
* * * * *
97302875 TTTTTT-TAACTTTAGATA-TATATTTGTGAAATTAA
1 TTTTTTAAAATTTTAAATATTATATTTTTAAAATTAA
* * *
97302910 TTTTTTATATATTTTAAA-AATATATTTTTCAAATTAA
1 TTTTTTA-AAATTTTAAATATTATATTTTTAAAATTAA
97302947 TTTTTTAAAATTTTAAATATTA-ATTTTTAAATATTAA
1 TTTTTTAAAATTTTAAATATTATATTTTTAAA-ATTAA
97302984 CCATATTTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
33 9 0.10
34 16 0.19
35 7 0.08
36 18 0.21
37 36 0.42
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (37 bp):
TTTTTTAAAATTTTAAATATTATATTTTTAAAATTAA
Found at i:97302990 original size:23 final size:23
Alignment explanation
Indices: 97302942--97302983 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
97302932 TATTTTTCAA
*
97302942 ATTAATTTTTTAAAATTTTAAAT
1 ATTAATTTTTTAAAATATTAAAT
97302965 ATTAA-TTTTT-AAATATTAA
1 ATTAATTTTTTAAAATATTAA
97302984 CCATATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 5 0.28
23 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTAATTTTTTAAAATATTAAAT
Found at i:97303073 original size:20 final size:19
Alignment explanation
Indices: 97303035--97303081 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
97303025 TTATAAATAC
97303035 AATTTCTTTAATTTCTTTTT
1 AATTT-TTTAATTTCTTTTT
97303055 AAATTTTTTAACTTT-TTTTT
1 -AATTTTTTAA-TTTCTTTTT
97303075 AATTTTT
1 AATTTTT
97303082 GAAAAGTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.28
20 10 0.40
21 8 0.32
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.70
Consensus pattern (19 bp):
AATTTTTTAATTTCTTTTT
Found at i:97303194 original size:18 final size:18
Alignment explanation
Indices: 97303173--97303213 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
97303163 TTTTTTTACT
97303173 TTTTTATTAAATTTTGTC
1 TTTTTATTAAATTTTGTC
* * *
97303191 TTTTTCTTAATTTTTTTC
1 TTTTTATTAAATTTTGTC
97303209 TTTTT
1 TTTTT
97303214 TAAGTTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTTTATTAAATTTTGTC
Found at i:97303232 original size:36 final size:36
Alignment explanation
Indices: 97303192--97303265 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
97303182 AATTTTGTCT
97303192 TTTTCTTAATTT-TTTTCTTT-TTTAAGTTTTATATTA
1 TTTTCTTAATTTATTTTCTTTATTTAA--TTTATATTA
* *
97303228 TTTTCTTATTTTATTTTGTTTATTTAATTTATATTA
1 TTTTCTTAATTTATTTTCTTTATTTAATTTATATTA
97303264 TT
1 TT
97303266 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 22 0.65
37 7 0.21
38 5 0.15
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.73
Consensus pattern (36 bp):
TTTTCTTAATTTATTTTCTTTATTTAATTTATATTA
Done.