Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 291 of 344
Found at i:97303239 original size:18 final size:18
Alignment explanation
Indices: 97303218--97303270 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
97303208 CTTTTTTAAG
97303218 TTTTATATTATTT-TCTTA
1 TTTTATATTATTTAT-TTA
* *
97303236 TTTTATTTTGTTTATTTA
1 TTTTATATTATTTATTTA
* *
97303254 ATTTATATTATTAATTT
1 TTTTATATTATTTATTT
97303271 TAAAAAAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTTATATTATTTATTTA
Found at i:97303389 original size:24 final size:24
Alignment explanation
Indices: 97303357--97303445 Score: 60
Period size: 24 Copynumber: 3.7 Consensus size: 24
97303347 TAACTTTAGA
*
97303357 TATATATTTTTGAAATTATTTTTT
1 TATAAATTTTTGAAATTATTTTTT
97303381 TATAAA-TTTT-AAATATATATTTTT
1 TATAAATTTTTGAAAT-TAT-TTTTT
* * *
97303405 CA-AATTAGTTTTGAAATTATTAGTTT
1 TATAA--ATTTTTGAAATTATT-TTTT
*
97303431 TAT-AATATTTGAAAT
1 TATAAATTTTTGAAAT
97303446 GTATGTTTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
22 4 0.08
23 9 0.18
24 20 0.39
25 2 0.04
26 12 0.24
27 4 0.08
ACGTcount: A:0.37, C:0.01, G:0.06, T:0.56
Consensus pattern (24 bp):
TATAAATTTTTGAAATTATTTTTT
Found at i:97303404 original size:37 final size:35
Alignment explanation
Indices: 97303307--97303416 Score: 127
Period size: 37 Copynumber: 3.2 Consensus size: 35
97303297 ATGTTTTACA
*
97303307 ATTTTTTTAAATTTTAATTAT-TATTTTTAAAATT
1 ATTTTTTTAAATTTTAAATATATATTTTTAAAATT
* * *
97303341 A-TTTTTT-AACTTTAGATATATATTTTTGAAATT
1 ATTTTTTTAAATTTTAAATATATATTTTTAAAATT
*
97303374 ATTTTTTTATAAATTTTAAATATATATTTTTCAAATT
1 A-TTTTTT-TAAATTTTAAATATATATTTTTAAAATT
*
97303411 AGTTTT
1 ATTTTT
97303417 GAAATTATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
32 9 0.14
33 19 0.30
34 1 0.02
35 5 0.08
36 5 0.08
37 24 0.38
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (35 bp):
ATTTTTTTAAATTTTAAATATATATTTTTAAAATT
Found at i:97303622 original size:21 final size:19
Alignment explanation
Indices: 97303583--97303629 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
97303573 CAAACTTTTC
*
97303583 AAAAATTAAAAAAAGTTAA
1 AAAAATTAAAAAAAATTAA
97303602 AAAAATGTAAAAAGAAATTAA
1 AAAAAT-TAAAAA-AAATTAA
*
97303623 AGAAATT
1 AAAAATT
97303630 GTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.25
20 7 0.29
21 11 0.46
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (19 bp):
AAAAATTAAAAAAAATTAA
Found at i:97303700 original size:14 final size:14
Alignment explanation
Indices: 97303681--97303707 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97303671 AAAAATATGG
97303681 TTAATATTTAAAAA
1 TTAATATTTAAAAA
97303695 TTAATATTTAAAA
1 TTAATATTTAAAA
97303708 TTTTAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATATTTAAAAA
Found at i:97303729 original size:36 final size:35
Alignment explanation
Indices: 97303681--97303822 Score: 139
Period size: 36 Copynumber: 4.0 Consensus size: 35
97303671 AAAAATATGG
97303681 TTAATATTTAAAAATTA-ATATTTAAAATTTTAAAAAA
1 TTAAT-TTTAAAAA-TACATATTTAAAA-TTTAAAAAA
* *
97303718 TTAATTTTAAAAATACATTTTTAAAATATATAAAAA
1 TTAATTTTAAAAATACATATTTAAAATTTA-AAAAA
* * * *
97303754 TTAATTTCACAAATACATATCT-AAAGTTAAAAAA
1 TTAATTTTAAAAATACATATTTAAAATTTAAAAAA
* *
97303788 -TATTTTTAAAAATA-ATAATTAAAATTTTAAAAAA
1 TTAATTTTAAAAATACATATTTAAAA-TTTAAAAAA
97303822 T
1 T
97303823 ATTATAAAAC
Statistics
Matches: 86, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
32 4 0.05
33 14 0.16
34 13 0.15
35 10 0.12
36 40 0.47
37 5 0.06
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.40
Consensus pattern (35 bp):
TTAATTTTAAAAATACATATTTAAAATTTAAAAAA
Found at i:97303836 original size:22 final size:22
Alignment explanation
Indices: 97303784--97303840 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
97303774 CTAAAGTTAA
*
97303784 AAAATATTTTTAAAAATAATAAT
1 AAAA-ATTTTAAAAAATAATAAT
* *
97303807 TAAAATTTTAAAAAAT-ATTAT
1 AAAAATTTTAAAAAATAATAAT
97303828 AAAACATTTTAAA
1 AAAA-ATTTTAAA
97303841 TATACATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 7 0.24
22 19 0.66
23 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATTTTAAAAAATAATAAT
Found at i:97303887 original size:10 final size:9
Alignment explanation
Indices: 97303866--97303937 Score: 74
Period size: 9 Copynumber: 7.9 Consensus size: 9
97303856 TTTTAAAGTT
97303866 AATAATAAAA
1 AATAA-AAAA
97303876 AATAAAACAA
1 AATAAAA-AA
97303886 AATAAAAAA
1 AATAAAAAA
* *
97303895 AAT-GAAAT
1 AATAAAAAA
*
97303903 AAGAAAAAA
1 AATAAAAAA
*
97303912 AATCAAAAA
1 AATAAAAAA
*
97303921 AGTAAAAAA
1 AATAAAAAA
97303930 AATAAAAA
1 AATAAAAA
97303938 GATACAATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
8 5 0.10
9 31 0.62
10 14 0.28
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.12
Consensus pattern (9 bp):
AATAAAAAA
Found at i:97303904 original size:34 final size:34
Alignment explanation
Indices: 97303866--97303939 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 34
97303856 TTTTAAAGTT
*
97303866 AATAATAAAAAATAA-AACAAAA-TAAAAAAAATGA
1 AATAAGAAAAAA-AACAA-AAAAGTAAAAAAAATGA
97303900 AATAAGAAAAAAAATCAAAAAAGTAAAAAAAAT-A
1 AATAAGAAAAAAAA-CAAAAAAGTAAAAAAAATGA
97303934 AA-AAGA
1 AATAAGA
97303940 TACAATTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
33 6 0.17
34 18 0.50
35 12 0.33
ACGTcount: A:0.80, C:0.03, G:0.05, T:0.12
Consensus pattern (34 bp):
AATAAGAAAAAAAACAAAAAAGTAAAAAAAATGA
Found at i:97303909 original size:17 final size:18
Alignment explanation
Indices: 97303872--97303937 Score: 73
Period size: 17 Copynumber: 3.7 Consensus size: 18
97303862 AGTTAATAAT
* *
97303872 AAAAAATAAAACAAAATAA
1 AAAAAATCAAA-AAAGTAA
* *
97303891 AAAAAATGAAATAAG-AA
1 AAAAAATCAAAAAAGTAA
97303908 AAAAAATCAAAAAAGTAA
1 AAAAAATCAAAAAAGTAA
97303926 AAAAAAT-AAAAA
1 AAAAAATCAAAAA
97303938 GATACAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
17 20 0.49
18 11 0.27
19 10 0.24
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.11
Consensus pattern (18 bp):
AAAAAATCAAAAAAGTAA
Found at i:97304785 original size:20 final size:21
Alignment explanation
Indices: 97304737--97304785 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
97304727 GTAGTGGCGG
* *
97304737 TGAGATTAGTTACTGTAGCGA
1 TGAGATTAGATACGGTAGCGA
* *
97304758 TGAAATTAGATACGGTAG-TA
1 TGAGATTAGATACGGTAGCGA
97304778 TGAGATTA
1 TGAGATTA
97304786 AAAACAACGA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.33
Consensus pattern (21 bp):
TGAGATTAGATACGGTAGCGA
Found at i:97312704 original size:133 final size:133
Alignment explanation
Indices: 97312558--97312832 Score: 532
Period size: 133 Copynumber: 2.1 Consensus size: 133
97312548 AATAATTAGT
97312558 TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTCTAAACATAAATAACTTAATA
1 TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTCTAAACATAAATAACTTAATA
*
97312623 TATTTTTAGCATTTACATTATAGTGCCATATATATTTAATTCCTTATATGCTACAAATTATATAT
66 TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
97312688 GTA
131 GTA
*
97312691 TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTTTAAACATAAATAACTTAATA
1 TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTCTAAACATAAATAACTTAATA
97312756 TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
66 TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
97312821 GTA
131 GTA
97312824 TATATATAT
1 TATATATAT
97312833 AAACTAAATG
Statistics
Matches: 140, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 140 1.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (133 bp):
TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTCTAAACATAAATAACTTAATA
TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
GTA
Found at i:97316363 original size:18 final size:19
Alignment explanation
Indices: 97316322--97316362 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
97316312 AAAAAATCAT
97316322 AAAAGTAAACTAACCTTAA
1 AAAAGTAAACTAACCTTAA
*
97316341 AAAAGTAAACTACCCTTAA
1 AAAAGTAAACTAACCTTAA
97316360 AAA
1 AAA
97316363 GATGAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.59, C:0.17, G:0.05, T:0.20
Consensus pattern (19 bp):
AAAAGTAAACTAACCTTAA
Found at i:97318115 original size:3 final size:3
Alignment explanation
Indices: 97318107--97318143 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
97318097 CCATTGAAAT
97318107 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
97318144 GCTTTGGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:97318615 original size:43 final size:44
Alignment explanation
Indices: 97318540--97318625 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 44
97318530 TAAGTAAAAT
*
97318540 CATATTTCATATATATTTTTTATGTGTGTTAATGAGTATTATAC
1 CATATTTCATATATATTTTTTATGTATGTTAATGAGTATTATAC
97318584 CATATTT-A-ATATAGTTTTTTATGTATGTTAATGAGTATTATA
1 CATATTTCATATATA-TTTTTTATGTATGTTAATGAGTATTATA
97318626 AATTTATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
42 5 0.12
43 28 0.70
44 7 0.17
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (44 bp):
CATATTTCATATATATTTTTTATGTATGTTAATGAGTATTATAC
Found at i:97319366 original size:50 final size:50
Alignment explanation
Indices: 97319291--97319389 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 50
97319281 CTTTTATGGA
97319291 GTATGACACTACTTTGATCTTAAGGGGGATCGGTAAGTTTACAAGAATAC
1 GTATGACACTACTTTGATCTTAAGGGGGATCGGTAAGTTTACAAGAATAC
* * *
97319341 GTATGACACTACTTTGATCTTAAGGGGGATTGGTAGGTTTACGAGAATA
1 GTATGACACTACTTTGATCTTAAGGGGGATCGGTAAGTTTACAAGAATA
97319390 TGAGTAAAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.31
Consensus pattern (50 bp):
GTATGACACTACTTTGATCTTAAGGGGGATCGGTAAGTTTACAAGAATAC
Found at i:97325331 original size:46 final size:45
Alignment explanation
Indices: 97325188--97325331 Score: 112
Period size: 46 Copynumber: 3.1 Consensus size: 45
97325178 CCCACCCATA
* * *
97325188 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--AATATC-C
* * * * * *** *
97325236 A-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGCTCG--GATGCCCAAATATCC
97325281 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATTCC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATA-TCC
97325327 AGTGA
1 AGTGA
97325332 CATGTCACTT
Statistics
Matches: 74, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
44 6 0.08
45 2 0.03
46 31 0.42
47 30 0.41
48 1 0.01
49 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATCC
Found at i:97329219 original size:21 final size:21
Alignment explanation
Indices: 97329193--97329241 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
97329183 AATAGAAGTT
*
97329193 GTGAATGACAGGAAATTGATA
1 GTGAATGACAGGAAATTGACA
*
97329214 GTGAATGACAGGGAATTGACA
1 GTGAATGACAGGAAATTGACA
97329235 -TGAATGA
1 GTGAATGA
97329242 TTTTATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.41, C:0.06, G:0.31, T:0.22
Consensus pattern (21 bp):
GTGAATGACAGGAAATTGACA
Found at i:97337803 original size:8 final size:8
Alignment explanation
Indices: 97337790--97337820 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
97337780 AGATCGGCAC
97337790 AAGCCGAA
1 AAGCCGAA
97337798 AAGCCGAA
1 AAGCCGAA
*
97337806 ATGCCGAA
1 AAGCCGAA
97337814 AAGCCGA
1 AAGCCGA
97337821 TATTTTGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.45, C:0.26, G:0.26, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:97338258 original size:27 final size:26
Alignment explanation
Indices: 97338209--97338340 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 26
97338199 AGGAAGCGTC
* *
97338209 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
97338236 CTGGTGGCTCTACCACATATATCTG-T
1 CTGGTGGCTCTGCCACA-ATATCTGAT
*
97338262 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTGAT
97338290 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
97338317 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
97338341 GCAGCCTCGC
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.10
27 80 0.88
28 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:97338322 original size:54 final size:54
Alignment explanation
Indices: 97338206--97338314 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
97338196 TGGAGGAAGC
*
97338206 GTCCTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
*
97338260 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
97338313 GT
1 GT
97338315 ATCTGGTGAC
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 8 0.15
54 45 0.85
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:97344287 original size:36 final size:36
Alignment explanation
Indices: 97344247--97344322 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
97344237 GTTGAAAGTT
97344247 AATTACAAATTATTTAAGCCAAACTTATATATGTCC
1 AATTACAAATTATTTAAGCCAAACTTATATATGTCC
97344283 AATTACAAATTATTTAAGCCAAACTTATATATGTCC
1 AATTACAAATTATTTAAGCCAAACTTATATATGTCC
97344319 AATT
1 AATT
97344323 GGTCCCTCCG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (36 bp):
AATTACAAATTATTTAAGCCAAACTTATATATGTCC
Found at i:97345609 original size:23 final size:23
Alignment explanation
Indices: 97345583--97345626 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
97345573 AAAATAAAAG
97345583 AAAAATTAACT-TATATATTAATT
1 AAAAATT-ACTATATATATTAATT
*
97345606 AAAAATTACTATATTTATTAA
1 AAAAATTACTATATATATTAA
97345627 ATATTTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (23 bp):
AAAAATTACTATATATATTAATT
Found at i:97345905 original size:20 final size:20
Alignment explanation
Indices: 97345880--97345921 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
97345870 ATTGAATTAC
** *
97345880 TAATTACATTTCTATTTCAT
1 TAATTACAACTCTATTCCAT
97345900 TAATTACAACTCTATTCCAT
1 TAATTACAACTCTATTCCAT
97345920 TA
1 TA
97345922 CAGTCATATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (20 bp):
TAATTACAACTCTATTCCAT
Found at i:97347329 original size:10 final size:10
Alignment explanation
Indices: 97347311--97347387 Score: 68
Period size: 10 Copynumber: 7.7 Consensus size: 10
97347301 ATACAATTCA
*
97347311 AACAAAATAG
1 AACAGAATAG
97347321 AACAGAATAG
1 AACAGAATAG
*
97347331 AGCAGAATAG
1 AACAGAATAG
*
97347341 AACA-AGATGG
1 AACAGA-ATAG
*
97347351 AACAGAGTAG
1 AACAGAATAG
* *
97347361 AGCA-ATACAG
1 AACAGA-ATAG
97347371 AACAGAATAG
1 AACAGAATAG
97347381 AACAGAA
1 AACAGAA
97347388 CAGAGTAGGA
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
9 2 0.04
10 48 0.92
11 2 0.04
ACGTcount: A:0.57, C:0.12, G:0.22, T:0.09
Consensus pattern (10 bp):
AACAGAATAG
Found at i:97347373 original size:30 final size:30
Alignment explanation
Indices: 97347311--97347392 Score: 94
Period size: 30 Copynumber: 2.7 Consensus size: 30
97347301 ATACAATTCA
*
97347311 AACAAAATAGAACAGAATAGAGCAGAATAG
1 AACAAAATAGAACAGAATAGAGCAGAACAG
* * *
97347341 AACAAGATGGAACAGAGTAGAGCA-ATACAG
1 AACAAAATAGAACAGAATAGAGCAGA-ACAG
* *
97347371 AACAGAATAGAACAGAACAGAG
1 AACAAAATAGAACAGAATAGAG
97347393 TAGGACAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 1 0.02
30 41 0.98
ACGTcount: A:0.56, C:0.12, G:0.23, T:0.09
Consensus pattern (30 bp):
AACAAAATAGAACAGAATAGAGCAGAACAG
Found at i:97351867 original size:92 final size:92
Alignment explanation
Indices: 97351733--97352027 Score: 358
Period size: 92 Copynumber: 3.2 Consensus size: 92
97351723 ATACAGTATG
* * ** *
97351733 AACTGCCAGATCAGAT-AATGGTATGTAGCGTAGCTAACGTACATGCGACACAGTGCAATGTGGT
1 AACTGCCAGTTCAG-TCAATGGTACGTAGCGTAGCTAACGTACATGCGGTACAGTGCAATGCGGT
* *
97351797 AATCTGCTATACCGATAGATTGCAGTAA
65 AATCCGCTATACCGATATATTGCAGTAA
* * * * * * *
97351825 AATTGCCAGTTCAGCCAATGGTACGTAGTGTATCTAATGTACATGCGGTACAGTGCAATACGATA
1 AACTGCCAGTTCAGTCAATGGTACGTAGCGTAGCTAACGTACATGCGGTACAGTGCAATGCGGTA
* **
97351890 ATCCGCTATACTGATATATTATAGTAA
66 ATCCGCTATACCGATATATTGCAGTAA
* * * * *
97351917 AACTACCAGTTCAGTTAATGGTACGTAGCGTAGCTAACGTACATGTGGTATAGTGCAATGCAGTA
1 AACTGCCAGTTCAGTCAATGGTACGTAGCGTAGCTAACGTACATGCGGTACAGTGCAATGCGGTA
* *
97351982 ATCCGCTATACCTATATATTGCAATAA
66 ATCCGCTATACCGATATATTGCAGTAA
97352009 AACTGCCAGTTCAGTCAAT
1 AACTGCCAGTTCAGTCAAT
97352028 CTCAATCTCC
Statistics
Matches: 166, Mismatches: 36, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
92 166 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (92 bp):
AACTGCCAGTTCAGTCAATGGTACGTAGCGTAGCTAACGTACATGCGGTACAGTGCAATGCGGTA
ATCCGCTATACCGATATATTGCAGTAA
Found at i:97354736 original size:28 final size:28
Alignment explanation
Indices: 97354697--97354766 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
97354687 TTCTGCCCCT
* * *
97354697 TTTTTCAGATTTTATAATTTTACCCATA
1 TTTTTCAGATTTTACAATATAACCCATA
* *
97354725 TTTTTCAAATTTTACAATATAATCCATA
1 TTTTTCAGATTTTACAATATAACCCATA
97354753 TTTTTCAGATTTTA
1 TTTTTCAGATTTTA
97354767 GATGTTACCT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.31, C:0.13, G:0.03, T:0.53
Consensus pattern (28 bp):
TTTTTCAGATTTTACAATATAACCCATA
Found at i:97356444 original size:27 final size:28
Alignment explanation
Indices: 97356414--97356488 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 28
97356404 TAAAATAATC
*
97356414 AATATATATAGAA-ACAAT-ATATAATAA
1 AATATAAATAGAATA-AATAATATAATAA
97356441 AATATAAATAGAATAAATAACATATAATAA
1 AATATAAATAGAATAAAT-A-ATATAATAA
*
97356471 AATATAACATATAATAAA
1 AATATAA-ATAGAATAAA
97356489 ATTTATAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 15 0.37
28 1 0.02
30 16 0.39
31 9 0.22
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (28 bp):
AATATAAATAGAATAAATAATATAATAA
Found at i:97356447 original size:10 final size:10
Alignment explanation
Indices: 97356432--97356477 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
97356422 TAGAAACAAT
97356432 ATATAATAAA
1 ATATAATAAA
*
97356442 ATATAAATAGA
1 ATAT-AATAAA
*
97356453 ATA-AATAAC
1 ATATAATAAA
97356462 ATATAATAAA
1 ATATAATAAA
97356472 ATATAA
1 ATATAA
97356478 CATATAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 7 0.23
10 15 0.50
11 8 0.27
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (10 bp):
ATATAATAAA
Found at i:97356479 original size:17 final size:17
Alignment explanation
Indices: 97356432--97356490 Score: 81
Period size: 17 Copynumber: 3.7 Consensus size: 17
97356422 TAGAAACAAT
97356432 ATATAATAAAATATAA-
1 ATATAATAAAATATAAC
*
97356448 ATAGAAT--AA-ATAAC
1 ATATAATAAAATATAAC
97356462 ATATAATAAAATATAAC
1 ATATAATAAAATATAAC
97356479 ATATAATAAAAT
1 ATATAATAAAAT
97356491 TTATAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
13 4 0.11
14 8 0.22
16 8 0.22
17 17 0.46
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (17 bp):
ATATAATAAAATATAAC
Found at i:97356487 original size:10 final size:9
Alignment explanation
Indices: 97356390--97356488 Score: 52
Period size: 9 Copynumber: 11.1 Consensus size: 9
97356380 GTAAATTTAC
97356390 ATATAA-AA
1 ATATAATAA
*
97356398 ATATAGTAA
1 ATATAATAA
*
97356407 A-ATAATCA
1 ATATAATAA
97356415 ATATATATAGA
1 ATATA-ATA-A
*
97356426 A-ACAAT--
1 ATATAATAA
97356432 ATATAATAAA
1 ATATAAT-AA
97356442 ATATAAATAGA
1 ATAT-AATA-A
97356453 ATA-AATAA
1 ATATAATAA
97356461 CATATAATAA
1 -ATATAATAA
97356471 A-AT-ATAA
1 ATATAATAA
97356478 CATATAATAA
1 -ATATAATAA
97356488 A
1 A
97356489 ATTTATAAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 29
0.67 0.06 0.28
Matches are distributed among these distances:
6 1 0.01
7 8 0.11
8 15 0.21
9 19 0.27
10 18 0.26
11 9 0.13
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (9 bp):
ATATAATAA
Found at i:97356845 original size:13 final size:12
Alignment explanation
Indices: 97356806--97356851 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
97356796 ATTTAGGGCC
*
97356806 AATTTAAAATAA
1 AATTAAAAATAA
* *
97356818 AAATAAAAATGA
1 AATTAAAAATAA
97356830 AATTAAAAATTAA
1 AATTAAAAA-TAA
97356843 AATTAAAAA
1 AATTAAAAA
97356852 ACATAGAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 17 0.61
13 11 0.39
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (12 bp):
AATTAAAAATAA
Found at i:97357855 original size:8 final size:7
Alignment explanation
Indices: 97357838--97357885 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
97357828 GTAAATGAAC
97357838 TTTTATT
1 TTTTATT
*
97357845 TTTTAAT
1 TTTTATT
*
97357852 TTTTGTT
1 TTTTATT
*
97357859 TTTTGTT
1 TTTTATT
*
97357866 TTTTGTT
1 TTTTATT
97357873 TTTTATT
1 TTTTATT
97357880 TATTTA
1 T-TTTA
97357886 ATTATGGGCC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
7 32 0.89
8 4 0.11
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.81
Consensus pattern (7 bp):
TTTTATT
Found at i:97357861 original size:7 final size:7
Alignment explanation
Indices: 97357851--97357876 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
97357841 TATTTTTTAA
97357851 TTTTTGT
1 TTTTTGT
97357858 TTTTTGT
1 TTTTTGT
97357865 TTTTTGT
1 TTTTTGT
97357872 TTTTT
1 TTTTT
97357877 ATTTATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTGT
Found at i:97358219 original size:44 final size:44
Alignment explanation
Indices: 97358156--97358637 Score: 528
Period size: 44 Copynumber: 11.0 Consensus size: 44
97358146 GCCATGTTGA
* **
97358156 TATCTTCGATCTGCTCTCTGACAATACAAAGATACCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
*
97358200 TATCTTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
97358244 TGTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * * *
97358288 TATCCTCAATTTGCTCCCTGACAATACAGAGATGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
97358332 TATCTTTGATCTGCTCTTTGACAATACAGAGACGCCAAATATG-
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * * * *
97358375 TTTCTTGGATTTACTC-CTCGTCAAATAC-GAAGATGCCAAA--T-C
1 TATCTTCGATCTGCTCTCT-GAC-AATACAG-AGACGCCAAATCTGC
* * * ** * *
97358417 -ATCTTGGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCTGC
* *
97358461 TATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
97358505 TATCTTTGATCTGCTCCCTAACAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
97358549 TATCTTCGATCTACTCACTGACAATATAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * *
97358593 TAACTTTGATCTGCTCCCTGACAATACAGAGACACCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
97358637 T
1 T
97358638 TGGATCTGCT
Statistics
Matches: 369, Mismatches: 59, Indels: 20
0.82 0.13 0.04
Matches are distributed among these distances:
41 29 0.08
42 4 0.01
43 16 0.04
44 303 0.82
45 17 0.05
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
Found at i:97370556 original size:17 final size:15
Alignment explanation
Indices: 97370529--97370574 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
97370519 AAATTTACAT
*
97370529 ATAAAAATATAGTAAA
1 ATAACAATATA-TAAA
97370545 ATAATCAATATATAAA
1 ATAA-CAATATATAAA
*
97370561 GTAACAATATATAA
1 ATAACAATATATAA
97370575 TAAAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 10 0.37
16 11 0.41
17 6 0.22
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.28
Consensus pattern (15 bp):
ATAACAATATATAAA
Found at i:97370570 original size:15 final size:16
Alignment explanation
Indices: 97370534--97370574 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
97370524 TACATATAAA
97370534 AATATAGTAAAATAATC
1 AATATA-TAAAATAATC
*
97370551 AATATATAAAGTAA-C
1 AATATATAAAATAATC
97370566 AATATATAA
1 AATATATAA
97370575 TAAAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.43
16 7 0.30
17 6 0.26
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (16 bp):
AATATATAAAATAATC
Found at i:97370724 original size:17 final size:16
Alignment explanation
Indices: 97370695--97370733 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
97370685 TATATATAGT
*
97370695 ATTTAAAATAAATTGA
1 ATTTAAAAAAAATTGA
*
97370711 ATTTCAAAAAAAATTTA
1 ATTT-AAAAAAAATTGA
97370728 ATTTAA
1 ATTTAA
97370734 TTTAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (16 bp):
ATTTAAAAAAAATTGA
Found at i:97371959 original size:14 final size:14
Alignment explanation
Indices: 97371937--97371980 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
97371927 GTAAATGAAC
97371937 TTTTATTTTTTAAT
1 TTTTATTTTTTAAT
* **
97371951 TTTTGTTTTTTGTT
1 TTTTATTTTTTAAT
97371965 TTTTATTTATTTAAT
1 TTTTATTT-TTTAAT
97371980 T
1 T
97371981 ATGGGCCCGG
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.80
Consensus pattern (14 bp):
TTTTATTTTTTAAT
Found at i:97376501 original size:24 final size:24
Alignment explanation
Indices: 97376474--97376526 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
97376464 TTTTTAGAAG
* *
97376474 ATTTAGTATTAATTAGTATAATAT
1 ATTTAGCATTAATTAGCATAATAT
* *
97376498 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTAATTAGCATAATAT
97376522 ATTTA
1 ATTTA
97376527 ACCTGCGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.51
Consensus pattern (24 bp):
ATTTAGCATTAATTAGCATAATAT
Found at i:97377231 original size:28 final size:28
Alignment explanation
Indices: 97377190--97377259 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
97377180 AGCTTGTCCT
* * *
97377190 TATTTTTCAAATTTTACAAAGTTGCCTC
1 TATTTTTTAGATTTTACAAAGTTGCCCC
*** *
97377218 TATTTTTTAGATTTTACACTTTTTCCCC
1 TATTTTTTAGATTTTACAAAGTTGCCCC
97377246 TATTTTTTAGATTT
1 TATTTTTTAGATTT
97377260 ACAGTTTTGC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.23, C:0.16, G:0.06, T:0.56
Consensus pattern (28 bp):
TATTTTTTAGATTTTACAAAGTTGCCCC
Found at i:97380127 original size:90 final size:90
Alignment explanation
Indices: 97379970--97380174 Score: 248
Period size: 90 Copynumber: 2.3 Consensus size: 90
97379960 GATTAATAAT
* * * * * * *
97379970 CTGCAACCCTAGTGGTTCATCCACAGATTATCTGGCAGCTTTTATTTACAAATATGTTTTGCATT
1 CTGCAACACTGGTGGTTCATCCACCGATTATCTAGCAGCTTTCATTTACAAATACGTTGTGCATT
* * * *
97380035 CACAATCATCTAATACCTTATTAAC
66 CACAACCATCTAACAACGTATTAAC
* ** **
97380060 CTGCAACACTGGTGGTTCATCCACCGATTTTCTAGCAGCTTTCATTTGTAAATACGTTGTGTGTT
1 CTGCAACACTGGTGGTTCATCCACCGATTATCTAGCAGCTTTCATTTACAAATACGTTGTGCATT
**
97380125 CACAACCATCTGGCAACGTATTAAC
66 CACAACCATCTAACAACGTATTAAC
97380150 CTGCAACACTGGTGGTTCATCCACC
1 CTGCAACACTGGTGGTTCATCCACC
97380175 CACATTCCGA
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 97 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (90 bp):
CTGCAACACTGGTGGTTCATCCACCGATTATCTAGCAGCTTTCATTTACAAATACGTTGTGCATT
CACAACCATCTAACAACGTATTAAC
Found at i:97380189 original size:90 final size:90
Alignment explanation
Indices: 97380053--97380245 Score: 262
Period size: 90 Copynumber: 2.1 Consensus size: 90
97380043 TCTAATACCT
* * * * *
97380053 TATTAACCTGCAACACTGGTGGTTCATCCACCGATTTTCTAGCAGCTTTCATTTGTAAATACGTT
1 TATTAACCTGCAACACTGGTGGTTCATCCACCCAATTCCGAGCAGCTCTCATTTGTAAATACGTT
* *** *
97380118 GTGTGTTCACAACCATCTGGCAACG
66 ATACATTCACAACCATCTGGCAACA
*
97380143 TATTAACCTGCAACACTGGTGGTTCATCCACCCACATTCCGA-CAGCTCTCATTTGTAAATATGT
1 TATTAACCTGCAACACTGGTGGTTCATCCACCCA-ATTCCGAGCAGCTCTCATTTGTAAATACGT
*
97380207 TATACATTCACAACCATCTGGCAGCA
65 TATACATTCACAACCATCTGGCAACA
97380233 TATTAACCTGCAA
1 TATTAACCTGCAA
97380246 TTTTTATGGT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
90 86 0.96
91 4 0.04
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (90 bp):
TATTAACCTGCAACACTGGTGGTTCATCCACCCAATTCCGAGCAGCTCTCATTTGTAAATACGTT
ATACATTCACAACCATCTGGCAACA
Found at i:97381021 original size:22 final size:23
Alignment explanation
Indices: 97380978--97381021 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
97380968 AGCTCATGGG
*
97380978 TTCTTTTAAAAATAGACTAAATT
1 TTCTTTTAAAAATAAACTAAATT
*
97381001 TTCTTTTAAAAGTAAAC-AAAT
1 TTCTTTTAAAAATAAACTAAAT
97381022 GTTTTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (23 bp):
TTCTTTTAAAAATAAACTAAATT
Found at i:97381985 original size:13 final size:12
Alignment explanation
Indices: 97381964--97381999 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
97381954 TATGTATAAA
97381964 TTAATTTTAACTT
1 TTAATTTTAAC-T
*
97381977 TTAACTTTAACT
1 TTAATTTTAACT
97381989 TTAATTTTAAC
1 TTAATTTTAAC
97382000 CATTCATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (12 bp):
TTAATTTTAACT
Found at i:97385559 original size:8 final size:8
Alignment explanation
Indices: 97385546--97385576 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
97385536 CAAGTTATAA
97385546 CAAAATAT
1 CAAAATAT
*
97385554 CAAAATAA
1 CAAAATAT
97385562 CAAAATAT
1 CAAAATAT
97385570 CAAAATA
1 CAAAATA
97385577 AAAGTAGTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.19
Consensus pattern (8 bp):
CAAAATAT
Found at i:97385563 original size:16 final size:16
Alignment explanation
Indices: 97385542--97385577 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
97385532 ATATCAAGTT
97385542 ATAACAAAATATCAAA
1 ATAACAAAATATCAAA
97385558 ATAACAAAATATCAAA
1 ATAACAAAATATCAAA
97385574 ATAA
1 ATAA
97385578 AAGTAGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.19
Consensus pattern (16 bp):
ATAACAAAATATCAAA
Found at i:97391250 original size:49 final size:50
Alignment explanation
Indices: 97391170--97391415 Score: 291
Period size: 49 Copynumber: 4.9 Consensus size: 50
97391160 ATCTATTGTG
* *
97391170 AGGTCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
97391220 -GGTCGCATGTGTAGTACTAACTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
97391270 CA-ATCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
97391320 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
97391370 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
97391416 GCCTTATCTA
Statistics
Matches: 164, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
49 83 0.51
50 46 0.28
51 35 0.21
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:97398823 original size:18 final size:18
Alignment explanation
Indices: 97398802--97398836 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97398792 CTTTTTCGTC
*
97398802 ATTTGTTTTGGGTTTATG
1 ATTTATTTTGGGTTTATG
97398820 ATTTATTTTGGGTTTAT
1 ATTTATTTTGGGTTTAT
97398837 ACATATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.23, T:0.63
Consensus pattern (18 bp):
ATTTATTTTGGGTTTATG
Found at i:97399195 original size:89 final size:88
Alignment explanation
Indices: 97399091--97399254 Score: 310
Period size: 89 Copynumber: 1.9 Consensus size: 88
97399081 AATGTTTAAA
97399091 AATTTTAATTAATTAAATTTATTTAATCAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
1 AATTTTAATTAATTAAATTTATTTAATCAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
97399156 AGACACTTAAATTTTAGATGGACT
66 -GACACTTAAATTTTAGATGGACT
*
97399180 AATTTTAATTAATTAAATTTATTTAATTAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
1 AATTTTAATTAATTAAATTTATTTAATCAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
97399245 GACACTTAAA
66 GACACTTAAA
97399255 ATCTAGTTGG
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
88 10 0.14
89 64 0.86
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.43
Consensus pattern (88 bp):
AATTTTAATTAATTAAATTTATTTAATCAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
GACACTTAAATTTTAGATGGACT
Found at i:97400808 original size:22 final size:22
Alignment explanation
Indices: 97400783--97400824 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
97400773 ATTATAGGTT
* *
97400783 AATATTAATATGTTTATTAATG
1 AATATAAATATATTTATTAATG
*
97400805 AATATAAATATATTTTTTAA
1 AATATAAATATATTTATTAA
97400825 CAATTTCTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
AATATAAATATATTTATTAATG
Found at i:97400899 original size:16 final size:17
Alignment explanation
Indices: 97400874--97400906 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
97400864 AATTTTAATT
*
97400874 TATAATATATTATTTCA
1 TATAATATATAATTTCA
97400891 TATAA-ATATAATTTCA
1 TATAATATATAATTTCA
97400907 ATCATTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (17 bp):
TATAATATATAATTTCA
Found at i:97406826 original size:46 final size:46
Alignment explanation
Indices: 97406764--97406999 Score: 278
Period size: 46 Copynumber: 5.1 Consensus size: 46
97406754 TTTGACATGA
* * * * * * *
97406764 TGCCATAGTGTCTTTCAACTATAGTCTTACTAATTT-TCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCT-TGTCACGT
* *
97406810 TGCCATGGTATTTTTCAACTATGGTCTTATTCATTTCTTGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTTGTCACGT
*
97406856 TGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCTTGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTTGTCACGT
* * * * *
97406902 TGCCATGTTATCTTTCACCCATGGTCTTATTTATTTCCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTTGTCACGT
* * *
97406948 TGCCATGATATTTTTCAACCATGGTCTTATTCATTTCTCGTCA-GAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTTGTCACG-T
97406994 TGCCAT
1 TGCCAT
97407000 AGTCCAACTA
Statistics
Matches: 166, Mismatches: 22, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
47 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.46
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTTGTCACGT
Found at i:97407064 original size:33 final size:33
Alignment explanation
Indices: 97407009--97407143 Score: 78
Period size: 33 Copynumber: 4.1 Consensus size: 33
97406999 TAGTCCAACT
* *
97407009 ATGGTCTTACACGTATATTGCCATGGCCCAGCC
1 ATGGTCTTACACATATAGTGCCATGGCCCAGCC
* ** * **
97407042 ATGGTCTTACAC-TCATGGTGCCATATCTCAGAT
1 ATGGTCTTACACAT-ATAGTGCCATGGCCCAGCC
* * * * * *
97407075 ATGGTATTA-TCATCA-GGATGCCATTGCCTAGCT
1 ATGGTCTTACACAT-ATAG-TGCCATGGCCCAGCC
* *
97407108 ATGGTCTTACACATATATTGCCATGGCCCAACC
1 ATGGTCTTACACATATAGTGCCATGGCCCAGCC
97407141 ATG
1 ATG
97407144 TTTTTATCTG
Statistics
Matches: 75, Mismatches: 22, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
32 4 0.05
33 68 0.91
34 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (33 bp):
ATGGTCTTACACATATAGTGCCATGGCCCAGCC
Found at i:97408690 original size:14 final size:14
Alignment explanation
Indices: 97408673--97408699 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97408663 ATGGGAAAAA
97408673 GATTATGGCTCTTT
1 GATTATGGCTCTTT
97408687 GATTATGGCTCTT
1 GATTATGGCTCTT
97408700 CATCTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.48
Consensus pattern (14 bp):
GATTATGGCTCTTT
Found at i:97419660 original size:20 final size:20
Alignment explanation
Indices: 97419635--97419674 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
97419625 AACAGAAGAT
97419635 AACAACCCTAACAGACTTAA
1 AACAACCCTAACAGACTTAA
*
97419655 AACAACCCTATCAGACTTAA
1 AACAACCCTAACAGACTTAA
97419675 TTGATCTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.30, G:0.05, T:0.17
Consensus pattern (20 bp):
AACAACCCTAACAGACTTAA
Found at i:97426149 original size:15 final size:16
Alignment explanation
Indices: 97426111--97426147 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
97426101 TAATGAAACT
*
97426111 TAAAAAAT-AATGATA
1 TAAAAAATAAATAATA
97426126 TAAAAAATAAATAATA
1 TAAAAAATAAATAATA
97426142 TAAAAA
1 TAAAAA
97426148 TATGAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAATAAATAATA
Found at i:97426150 original size:24 final size:25
Alignment explanation
Indices: 97426123--97426192 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 25
97426113 AAAAATAATG
97426123 ATATAAAAAATAAATAATA-TAAAA
1 ATATAAAAAATAAATAATATTAAAA
* * * *
97426147 ATATGAAATATAGAT-ATATTAAAT
1 ATATAAAAAATAAATAATATTAAAA
* *
97426171 CTATAAAAAATATATAAATATT
1 ATATAAAAAATAAAT-AATATT
97426193 TTAATAACAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
23 3 0.09
24 27 0.77
26 5 0.14
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (25 bp):
ATATAAAAAATAAATAATATTAAAA
Found at i:97426196 original size:28 final size:28
Alignment explanation
Indices: 97426154--97426213 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
97426144 AAAATATGAA
* *
97426154 ATATAGATATATTAA-ATCTATAAAAAAT
1 ATATAAATATATTAATAAC-ATAAAAAAT
* *
97426182 ATATAAATATTTTAATAACATAAAATAT
1 ATATAAATATATTAATAACATAAAAAAT
97426210 ATAT
1 ATAT
97426214 TCAAATTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 25 0.93
29 2 0.07
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (28 bp):
ATATAAATATATTAATAACATAAAAAAT
Found at i:97432312 original size:26 final size:26
Alignment explanation
Indices: 97432273--97432380 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
97432263 TGGTACAAAT
97432273 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
97432299 TGATAATGGATTAGGTGAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
97432325 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
97432351 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97432377 TGAT
1 TGAT
97432381 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:97439390 original size:26 final size:26
Alignment explanation
Indices: 97439361--97439468 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
97439351 TGGTACAAAT
* *
97439361 TGATAACGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
97439387 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
97439413 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
**
97439439 TGATAATGATTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
97439465 TGAT
1 TGAT
97439469 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:97439424 original size:52 final size:52
Alignment explanation
Indices: 97439361--97439468 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
97439351 TGGTACAAAT
97439361 TGATAACGGGTTAGGTAAATGTTCCATGATAATGGA-TTAGGTAAATATTCCA
1 TGATAACGGGTTAGGTAAATGTTCCATGATAAT-GATTTAGGTAAATATTCCA
*
97439413 TGATAATGGGTTAGGTAAATGTTCCATGATAATGATTTAGGTAAATATTCCA
1 TGATAACGGGTTAGGTAAATGTTCCATGATAATGATTTAGGTAAATATTCCA
97439465 TGAT
1 TGAT
97439469 GGGCATTTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
51 2 0.04
52 52 0.96
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.35
Consensus pattern (52 bp):
TGATAACGGGTTAGGTAAATGTTCCATGATAATGATTTAGGTAAATATTCCA
Found at i:97440953 original size:25 final size:26
Alignment explanation
Indices: 97440925--97440976 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
97440915 AATTCAGTTT
*
97440925 TACCCCTAGTGATAAATT-ACCGAAA
1 TACCCCTAGGGATAAATTGACCGAAA
* *
97440950 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
97440976 T
1 T
97440977 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:97441531 original size:1 final size:1
Alignment explanation
Indices: 97441525--97441864 Score: 347
Period size: 1 Copynumber: 340.0 Consensus size: 1
97441515 GTTCTGAAAG
97441525 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
97441590 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** **** **** * * * ** ***
97441655 TGGTGAACTGGACTTCTATTATTTCGTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*** * ******* ** * **
97441720 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTATAAGCCGCTTAATTATTTTTGATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
97441785 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
97441850 TTTTTTTTTTGTTTT
1 TTTTTTTTTTTTTTT
97441865 GATAGGTTTT
Statistics
Matches: 295, Mismatches: 44, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 295 1.00
ACGTcount: A:0.04, C:0.02, G:0.04, T:0.89
Consensus pattern (1 bp):
T
Found at i:97442738 original size:21 final size:21
Alignment explanation
Indices: 97442714--97442753 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
97442704 CCAATCCCAT
97442714 GCAT-CAGATAATAACAACATG
1 GCATGCAGA-AATAACAACATG
*
97442735 GCATGCATAAATAACAACA
1 GCATGCAGAAATAACAACA
97442754 GTCAAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.50, C:0.20, G:0.12, T:0.17
Consensus pattern (21 bp):
GCATGCAGAAATAACAACATG
Found at i:97444292 original size:29 final size:28
Alignment explanation
Indices: 97444260--97444347 Score: 79
Period size: 30 Copynumber: 3.0 Consensus size: 28
97444250 AAAATTCATT
97444260 ATCAAATTAAAATAAAATAAAAATATAG
1 ATCAAATTAAAATAAAATAAAAATATAG
*
97444288 AATCAAAACTAAAATAAATAATAAAAAT-TAG
1 -ATC-AAATTAAAAT-AA-AATAAAAATATAG
* * *
97444319 ATTAAATATAAATATAGAATCAAAATATA
1 ATCAAAT-TAAA-ATAAAATAAAAATATA
97444348 AGCACCAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
29 14 0.29
30 18 0.38
31 7 0.15
32 9 0.19
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (28 bp):
ATCAAATTAAAATAAAATAAAAATATAG
Found at i:97466361 original size:13 final size:13
Alignment explanation
Indices: 97466343--97466370 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
97466333 CCTTAGTAAG
97466343 TAGTTAATTAGTT
1 TAGTTAATTAGTT
97466356 TAGTTAATTAGTT
1 TAGTTAATTAGTT
97466369 TA
1 TA
97466371 ATAAACGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (13 bp):
TAGTTAATTAGTT
Found at i:97470135 original size:49 final size:49
Alignment explanation
Indices: 97470063--97470350 Score: 326
Period size: 49 Copynumber: 5.8 Consensus size: 49
97470053 TGAGGTCACG
* *
97470063 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * *
97470112 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAA-T-TGGTCGCA
* * * * *
97470163 TGCGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * * *
97470212 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGGTCGCA
* * * *
97470263 TGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
97470312 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
97470351 GCTTCGGCTA
Statistics
Matches: 193, Mismatches: 40, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
49 111 0.58
50 8 0.04
51 74 0.38
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:97470231 original size:100 final size:100
Alignment explanation
Indices: 97470058--97470345 Score: 495
Period size: 100 Copynumber: 2.9 Consensus size: 100
97470048 TATTGTGAGG
97470058 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
97470123 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
* * *
97470158 TCACGTGCGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCGTATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
97470223 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
* * * *
97470258 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTTGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
97470323 AAGTGCAGGCTACTACGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
97470346 AGATAGCTTC
Statistics
Matches: 176, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 176 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
Found at i:97474654 original size:46 final size:46
Alignment explanation
Indices: 97474602--97474860 Score: 376
Period size: 46 Copynumber: 5.6 Consensus size: 46
97474592 GTGCTCTCTT
** *
97474602 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
97474648 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
97474694 ATAAGAAATGAATAAGACCATGGTTGAAAGATATCATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* * * *
97474740 ACAGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
*
97474786 ACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
97474832 ATA-GAAAATGAGTAAGACCATAGTTGAAA
1 ATATG-AAATGAATAAGACCATGGTTGAAA
97474861 AACACTATGG
Statistics
Matches: 195, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 194 0.99
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (46 bp):
ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
Found at i:97475178 original size:16 final size:17
Alignment explanation
Indices: 97475157--97475189 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97475147 ATGATGGTGC
97475157 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
97475173 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
97475190 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:97476051 original size:25 final size:25
Alignment explanation
Indices: 97476004--97476052 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
97475994 CTGTTTTTGA
* *
97476004 TAGTATATCCTGAAACTGCTATAGG
1 TAGTATATACTGAAACTACTATAGG
* *
97476029 TAGTATATACTGAGACTATTATAG
1 TAGTATATACTGAAACTACTATAG
97476053 ATAGACTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:97489543 original size:20 final size:20
Alignment explanation
Indices: 97489504--97489544 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
97489494 AATGTAAGTA
* **
97489504 AAGTTACGGTTTTCCGACAC
1 AAGTTACGATTTTCAAACAC
97489524 AAGTTACGATTTTCAAACAC
1 AAGTTACGATTTTCAAACAC
97489544 A
1 A
97489545 TTAACATGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (20 bp):
AAGTTACGATTTTCAAACAC
Found at i:97492675 original size:33 final size:33
Alignment explanation
Indices: 97492620--97492745 Score: 135
Period size: 33 Copynumber: 3.8 Consensus size: 33
97492610 CATGGCATCC
* * *
97492620 ACAGAAATAGTCTGCTGCGACAGTAAACATAGA
1 ACAGAGATAGTCCGCTGGGACAGTAAACATAGA
* *
97492653 ATAGAGATAGTCCGTTGGGACAGTAAACATAGA
1 ACAGAGATAGTCCGCTGGGACAGTAAACATAGA
* * * *
97492686 ACAGAGATAGTCTGCTGGGACAGTAAATACATA
1 ACAGAGATAGTCCGCTGGGACAGTAAACATAGA
* ** *
97492719 ACAAAGATAGTCTACTGGGATAGTAAA
1 ACAGAGATAGTCCGCTGGGACAGTAAA
97492746 TGAAAAACAA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 79 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (33 bp):
ACAGAGATAGTCCGCTGGGACAGTAAACATAGA
Found at i:97492738 original size:66 final size:66
Alignment explanation
Indices: 97492620--97492745 Score: 153
Period size: 66 Copynumber: 1.9 Consensus size: 66
97492610 CATGGCATCC
* * * **
97492620 ACAGAAATAGTCTGCTGCGACAGTAAACATAGAATAGAGATAGTCCGTTGGGACAGTAAACATAG
1 ACAGAAATAGTCTGCTGCGACAGTAAACACAGAACAAAGATAGTCCACTGGGACAGTAAACATAG
97492685 A
66 A
* * * * * *
97492686 ACAGAGATAGTCTGCTGGGACAGTAAATACATAACAAAGATAGTCTACTGGGATAGTAAA
1 ACAGAAATAGTCTGCTGCGACAGTAAACACAGAACAAAGATAGTCCACTGGGACAGTAAA
97492746 TGAAAAACAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (66 bp):
ACAGAAATAGTCTGCTGCGACAGTAAACACAGAACAAAGATAGTCCACTGGGACAGTAAACATAG
A
Found at i:97492746 original size:33 final size:33
Alignment explanation
Indices: 97492668--97492760 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
97492658 GATAGTCCGT
* * * *
97492668 TGGGACAGTAAA-CATAGAACAGAGATAGTCTGC
1 TGGGACAGTAAATGA-AAAACAAAGATAGTCTAC
*
97492701 TGGGACAGTAAAT-ACATAACAAAGATAGTCTAC
1 TGGGACAGTAAATGA-AAAACAAAGATAGTCTAC
*
97492734 TGGGATAGTAAATGAAAAACAAAGATA
1 TGGGACAGTAAATGAAAAACAAAGATA
97492761 ATCAGTTGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
33 51 0.98
34 1 0.02
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.19
Consensus pattern (33 bp):
TGGGACAGTAAATGAAAAACAAAGATAGTCTAC
Found at i:97496999 original size:16 final size:16
Alignment explanation
Indices: 97496978--97497018 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
97496968 TTGTTTGAAT
*
97496978 ATAGTTATTCTAAATA
1 ATAGTTATTCCAAATA
*
97496994 ATAGTTGTTCCAAATA
1 ATAGTTATTCCAAATA
*
97497010 ATAATTATT
1 ATAGTTATT
97497019 TTCAATAGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (16 bp):
ATAGTTATTCCAAATA
Found at i:97497177 original size:3 final size:3
Alignment explanation
Indices: 97497163--97497212 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
97497153 ATGGTGTATC
* *
97497163 TAT TAT TGT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
97497211 TA
1 TA
97497213 ACGTCTTGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:97504469 original size:23 final size:26
Alignment explanation
Indices: 97504430--97504476 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
97504420 TTATTTTCAC
97504430 TTTTAAAATTTTTTAAT-AATTTATA
1 TTTTAAAATTTTTTAATAAATTTATA
97504455 TTTT-AAA-TTTTTAATAAATTTA
1 TTTTAAAATTTTTTAATAAATTTA
97504477 ATGTAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.38
24 9 0.43
25 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTTAAAATTTTTTAATAAATTTATA
Found at i:97504485 original size:23 final size:23
Alignment explanation
Indices: 97504433--97504485 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
97504423 TTTTCACTTT
*
97504433 TAAAATTTTTTAATAATTTATATT
1 TAAAA-TTTTTAATAATTTATATG
*
97504457 TTAAATTTTTAATAAATTTA-ATG
1 TAAAATTTTTAAT-AATTTATATG
97504480 TAAAAT
1 TAAAAT
97504486 GTTATATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TAAAATTTTTAATAATTTATATG
Found at i:97508119 original size:37 final size:37
Alignment explanation
Indices: 97508078--97508152 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
97508068 CCTTTAATAT
97508078 TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
1 TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
97508115 TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
1 TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
97508152 T
1 T
97508153 GTACAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (37 bp):
TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
Found at i:97511610 original size:17 final size:18
Alignment explanation
Indices: 97511575--97511612 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
97511565 TACTAATTAT
97511575 ATAAGTATCTCATGTATC
1 ATAAGTATCTCATGTATC
97511593 ATAA-TATC-CATGTAATC
1 ATAAGTATCTCATGT-ATC
97511610 ATA
1 ATA
97511613 TAATTCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.26
17 10 0.53
18 4 0.21
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (18 bp):
ATAAGTATCTCATGTATC
Found at i:97511621 original size:17 final size:17
Alignment explanation
Indices: 97511584--97511629 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
97511574 TATAAGTATC
97511584 TCATGT-ATCATAATAT
1 TCATGTAATCATAATAT
*
97511600 CCATGTAATCAT-ATAAT
1 TCATGTAATCATAAT-AT
97511617 TCATGTAAATCAT
1 TCATGT-AATCAT
97511630 GTATCTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 7 0.28
17 12 0.48
18 6 0.24
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (17 bp):
TCATGTAATCATAATAT
Found at i:97511645 original size:25 final size:26
Alignment explanation
Indices: 97511601--97511654 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
97511591 TCATAATATC
97511601 CATGTAATCATATAATTCATGTAAAT
1 CATGTAATCATATAATTCATGTAAAT
*
97511627 CATGT-ATCTTATAATTCATGTAAAT
1 CATGTAATCATATAATTCATGTAAAT
97511652 CAT
1 CAT
97511655 ATAGCTCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (26 bp):
CATGTAATCATATAATTCATGTAAAT
Found at i:97511670 original size:25 final size:25
Alignment explanation
Indices: 97511611--97511666 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
97511601 CATGTAATCA
*
97511611 TATAATTCATGTAAATCATGTATCT
1 TATAATTCATGTAAATCATATATCT
97511636 TATAATTCATGTAAATCATATAGCTCT
1 TATAATTCATGTAAATCATATA--TCT
97511663 TATA
1 TATA
97511667 TCATATGATC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 21 0.75
27 7 0.25
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (25 bp):
TATAATTCATGTAAATCATATATCT
Found at i:97511886 original size:29 final size:29
Alignment explanation
Indices: 97511831--97511887 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
97511821 CTGAGATGAT
* * *
97511831 AAACGGTAAGCTCCGTAGAGTTAAAACAA
1 AAACGGTAAGCCCCGAAGAGCTAAAACAA
*
97511860 AAACGGTAAGCCCCGAAGAGCTGAAACA
1 AAACGGTAAGCCCCGAAGAGCTAAAACA
97511888 GTAAGCTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (29 bp):
AAACGGTAAGCCCCGAAGAGCTAAAACAA
Found at i:97512370 original size:94 final size:93
Alignment explanation
Indices: 97512210--97512396 Score: 347
Period size: 94 Copynumber: 2.0 Consensus size: 93
97512200 TTATCTTGGT
97512210 CTATATATTAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCAAAATT
1 CTATATATTAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCAAAATT
*
97512275 ATACATTTGCCCCTATACTTTTGACTAC
66 ATACATTTGCCCCTATACCTTTGACTAC
*
97512303 CTATATATTAAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCCAAAT
1 CTATATATT-AAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCAAAAT
97512368 TATACATTTGCCCCTATACCTTTGACTAC
65 TATACATTTGCCCCTATACCTTTGACTAC
97512397 TTTGCAATTT
Statistics
Matches: 91, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
93 9 0.10
94 82 0.90
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.39
Consensus pattern (93 bp):
CTATATATTAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCAAAATT
ATACATTTGCCCCTATACCTTTGACTAC
Found at i:97514974 original size:202 final size:201
Alignment explanation
Indices: 97514628--97515030 Score: 752
Period size: 202 Copynumber: 2.0 Consensus size: 201
97514618 ATTGTCTTAA
*
97514628 TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTGCATTCTTAGTTTAGTAATT
1 TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTCCATTCTTAGTTTAGTAATT
*
97514693 AGTTTAAATAACCAAACCACTTAATTTTTTTTAGGCTAGATAATAAAAAGGAAGTAAATACTAGT
66 AGTTTAAATAACCAAACCACTTAATTTTTTTTAAGCTAGATAATAAAAAGGAAGTAAATACTAGT
*
97514758 ACTCCTGGTTCCCTTGGGTTCGACAATCCGGTCTTGCTGAACTATACTACTGTTTCGATAGGTAC
131 ACTCCTGGTTCCCTTAGGTTCGACAATCCGGTCTTGCTGAACTATACTACTG-TTCGATAGGTAC
97514823 ACTTGCC
195 ACTTGCC
97514830 TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTCCATTCTTAGTTTAGTAATT
1 TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTCCATTCTTAGTTTAGTAATT
97514895 AGTTTAAATAACCAAACCACTTAATTTTTTTTAAGCTAGATAATAAAAAGGAAGTAAATACTAGT
66 AGTTTAAATAACCAAACCACTTAATTTTTTTTAAGCTAGATAATAAAAAGGAAGTAAATACTAGT
* *
97514960 ATTCGTGGTTCCCTTAGGTTCGACAATCCGGTCTTGCTGAACTATACTACTGTTCGATAGGTACA
131 ACTCCTGGTTCCCTTAGGTTCGACAATCCGGTCTTGCTGAACTATACTACTGTTCGATAGGTACA
97515025 CTTGCC
196 CTTGCC
97515031 ATAATCGTGA
Statistics
Matches: 196, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
201 19 0.10
202 177 0.90
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (201 bp):
TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTCCATTCTTAGTTTAGTAATT
AGTTTAAATAACCAAACCACTTAATTTTTTTTAAGCTAGATAATAAAAAGGAAGTAAATACTAGT
ACTCCTGGTTCCCTTAGGTTCGACAATCCGGTCTTGCTGAACTATACTACTGTTCGATAGGTACA
CTTGCC
Found at i:97527251 original size:12 final size:12
Alignment explanation
Indices: 97527231--97527265 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
97527221 CCATTGTTTA
97527231 ACCAAATATTGC
1 ACCAAATATTGC
*
97527243 ACCATATATTGC
1 ACCAAATATTGC
97527255 ATCCAAATATT
1 A-CCAAATATT
97527266 TTTACAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (12 bp):
ACCAAATATTGC
Found at i:97527671 original size:21 final size:23
Alignment explanation
Indices: 97527628--97527673 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
97527618 AATTTAGGGG
97527628 TTTAATTTTATTTTTCAACTCGAC
1 TTTAATTTTA-TTTTCAACTCGAC
97527652 TTTAATTTTA-TTTC-ACTCGAC
1 TTTAATTTTATTTTCAACTCGAC
97527673 T
1 T
97527674 CGATTCAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.36
22 4 0.18
24 10 0.45
ACGTcount: A:0.24, C:0.17, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTAATTTTATTTTCAACTCGAC
Found at i:97532112 original size:95 final size:95
Alignment explanation
Indices: 97531860--97532124 Score: 264
Period size: 95 Copynumber: 2.8 Consensus size: 95
97531850 AGTGATTAGG
* * * * *
97531860 AAATCAACTAACATAGATAAGATTTTTCATGATAG-TAAATCAAATGAACTTATGCTGCAATCTT
1 AAATCAACTAACTTAGATAAGATTGTTCATGAT-GTTAAATCGAATGAACTTAGGCTGCGATCTT
* * *
97531924 AAGTCAGTGAGCCATTTCAAGCAGCAATGTT
65 AAATCAGTGAGACATTTCAAGCAGCAATATT
* ** * * * * *
97531955 GAATCAGTTAACTTAAATAAGTTTGTTCATGATGTTAAATTGAATGAACATAGGCCGCGATCTTA
1 AAATCAACTAACTTAGATAAGATTGTTCATGATGTTAAATCGAATGAACTTAGGCTGCGATCTTA
** *
97532020 AATCAGTGA-ACAGTTTGGAGCAGCGATATT
66 AATCAGTGAGACA-TTTCAAGCAGCAATATT
* * * * *
97532050 AAATCACCTAACTTAGATAAGATTGCTCATGATGTTAAATCGAATGAGCTTAGGTTGTGATCTTA
1 AAATCAACTAACTTAGATAAGATTGTTCATGATGTTAAATCGAATGAACTTAGGCTGCGATCTTA
* *
97532115 AGTCAATGAG
66 AATCAGTGAG
97532125 CTTATTGATA
Statistics
Matches: 134, Mismatches: 33, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
94 3 0.02
95 131 0.98
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (95 bp):
AAATCAACTAACTTAGATAAGATTGTTCATGATGTTAAATCGAATGAACTTAGGCTGCGATCTTA
AATCAGTGAGACATTTCAAGCAGCAATATT
Found at i:97534160 original size:26 final size:26
Alignment explanation
Indices: 97534131--97534235 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
97534121 TGATACAAAT
97534131 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
97534157 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
97534183 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
97534209 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97534235 T
1 T
97534236 TGTGGGAATT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:97535752 original size:25 final size:26
Alignment explanation
Indices: 97535724--97535775 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
97535714 TTTACAGTTT
97535724 TACCC-TAAGAGATAAATT-ACCGAAA
1 TACCCATAAG-GATAAATTGACCGAAA
* *
97535749 TACCCATAAGGTTAAATTGACCTAAA
1 TACCCATAAGGATAAATTGACCGAAA
97535775 T
1 T
97535776 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (26 bp):
TACCCATAAGGATAAATTGACCGAAA
Found at i:97539944 original size:22 final size:22
Alignment explanation
Indices: 97539918--97539963 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
97539908 AATTATTTGG
*
97539918 ATTGATAAAATTGTATTATGAA
1 ATTGAGAAAATTGTATTATGAA
* *
97539940 ATTGAGGAAATTGTTTTATGAA
1 ATTGAGAAAATTGTATTATGAA
97539962 AT
1 AT
97539964 GAACTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (22 bp):
ATTGAGAAAATTGTATTATGAA
Found at i:97546506 original size:21 final size:21
Alignment explanation
Indices: 97546480--97546550 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 21
97546470 TTTTACAATT
97546480 TAATATCTTTGTGAATTACAA
1 TAATATCTTTGTGAATTACAA
* *** **
97546501 TAATATAATAAAT-TTTTACAA
1 TAATAT-CTTTGTGAATTACAA
97546522 TTTAATATCTTTGTGAATTACAA
1 -T-AATATCTTTGTGAATTACAA
97546545 TAATAT
1 TAATAT
97546551 AATAAATTCT
Statistics
Matches: 34, Mismatches: 12, Indels: 8
0.63 0.22 0.15
Matches are distributed among these distances:
21 17 0.50
22 6 0.18
23 11 0.32
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (21 bp):
TAATATCTTTGTGAATTACAA
Found at i:97546522 original size:44 final size:44
Alignment explanation
Indices: 97546469--97546558 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
97546459 AAGTTTTTTT
97546469 TTTTTACAATTTAATATCTTTGTGAATTACAATAATATAATAAA
1 TTTTTACAATTTAATATCTTTGTGAATTACAATAATATAATAAA
97546513 TTTTTACAATTTAATATCTTTGTGAATTACAATAATATAATAAA
1 TTTTTACAATTTAATATCTTTGTGAATTACAATAATATAATAAA
97546557 TT
1 TT
97546559 CTAAATAACA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (44 bp):
TTTTTACAATTTAATATCTTTGTGAATTACAATAATATAATAAA
Found at i:97546542 original size:23 final size:23
Alignment explanation
Indices: 97546472--97546545 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
97546462 TTTTTTTTTT
97546472 TTACAATTTAATATCTTTGTGAA
1 TTACAATTTAATATCTTTGTGAA
**
97546495 TTACAATAATATAATA-AATT-T---
1 TTACAAT--T-TAATATCTTTGTGAA
97546516 TTACAATTTAATATCTTTGTGAA
1 TTACAATTTAATATCTTTGTGAA
97546539 TTACAAT
1 TTACAAT
97546546 AATATAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
18 5 0.13
19 3 0.08
20 1 0.03
21 7 0.18
23 14 0.36
24 1 0.03
25 3 0.08
26 5 0.13
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (23 bp):
TTACAATTTAATATCTTTGTGAA
Found at i:97552976 original size:37 final size:37
Alignment explanation
Indices: 97552934--97553081 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
97552924 AGCTAAAGCT
*
97552934 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
* *
97552971 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
**
97553008 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
97553045 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
97553082 GCTAAAACTA
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (37 bp):
ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
Found at i:97568359 original size:57 final size:57
Alignment explanation
Indices: 97568296--97568433 Score: 206
Period size: 57 Copynumber: 2.4 Consensus size: 57
97568286 ATTCATGGAA
*
97568296 AGAATATGACATTGAGATGAGTTATGTATATTTGATATAAATTTATGGATAGATGAT
1 AGAATATGACATTGAGATGAGTTATGTATATTTGATATAAATTCATGGATAGATGAT
* * *
97568353 AGAATATGACATTGATATGAGTTATGTGTATTTGATATAAATTCATGGATTGATGAT
1 AGAATATGACATTGAGATGAGTTATGTATATTTGATATAAATTCATGGATAGATGAT
* *
97568410 A-AATTATAACATTGTGATGAGTTA
1 AGAA-TATGACATTGAGATGAGTTA
97568434 AGTGAAATTG
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
56 2 0.03
57 71 0.97
ACGTcount: A:0.38, C:0.03, G:0.20, T:0.39
Consensus pattern (57 bp):
AGAATATGACATTGAGATGAGTTATGTATATTTGATATAAATTCATGGATAGATGAT
Found at i:97578465 original size:25 final size:24
Alignment explanation
Indices: 97578426--97578513 Score: 87
Period size: 22 Copynumber: 3.7 Consensus size: 24
97578416 TAAATCAAAA
97578426 TTAATATTATT-ATATTAAAAATAAGT
1 TTAATATT-TTAATATTAAAAAT-A-T
*
97578452 TTTAT-TTTTAATATTAAAAATAT
1 TTAATATTTTAATATTAAAAATAT
97578475 TTAATATTTTAATA-T-AAAATAT
1 TTAATATTTTAATATTAAAAATAT
*
97578497 TATAAT-TTTCAATATTA
1 T-TAATATTTTAATATTA
97578514 TTAAACATAC
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
22 15 0.28
23 11 0.20
24 11 0.20
25 13 0.24
26 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (24 bp):
TTAATATTTTAATATTAAAAATAT
Found at i:97578470 original size:24 final size:25
Alignment explanation
Indices: 97578426--97578513 Score: 73
Period size: 23 Copynumber: 3.7 Consensus size: 25
97578416 TAAATCAAAA
97578426 TTAATATTATT-ATATTAAAA-ATAAGT
1 TTAATATT-TTAATATTAAAATAT-A-T
*
97578452 TTTAT-TTTTAATATTAAAA-ATAT
1 TTAATATTTTAATATTAAAATATAT
97578475 TTAATATTTTAATA-TAAAATAT-T
1 TTAATATTTTAATATTAAAATATAT
* *
97578498 ATAAT-TTTCAATATTA
1 TTAATATTTTAATATTA
97578514 TTAAACATAC
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
22 7 0.13
23 17 0.31
24 13 0.24
25 13 0.24
26 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (25 bp):
TTAATATTTTAATATTAAAATATAT
Found at i:97581589 original size:6 final size:6
Alignment explanation
Indices: 97581573--97581603 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
97581563 CCAAAGTGAT
97581573 AGGGGG A-GGGG AGGGGG AGGGGG AGGGGG AG
1 AGGGGG AGGGGG AGGGGG AGGGGG AGGGGG AG
97581604 AGAGAGATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (6 bp):
AGGGGG
Found at i:97581794 original size:9 final size:9
Alignment explanation
Indices: 97581780--97581809 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
97581770 TTATAATTAT
97581780 AAATTTTTG
1 AAATTTTTG
97581789 AAATTTTTG
1 AAATTTTTG
97581798 AAATTTTTG
1 AAATTTTTG
97581807 AAA
1 AAA
97581810 ACATAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (9 bp):
AAATTTTTG
Found at i:97598141 original size:21 final size:21
Alignment explanation
Indices: 97598115--97598169 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
97598105 ACAGCGGTGG
*
97598115 CGGTGAGATTAGTTACTGTAA
1 CGGTGAGATTAGATACTGTAA
*
97598136 CGGTGAGATTAGATACTGTAG
1 CGGTGAGATTAGATACTGTAA
*
97598157 CAGTGAGATTAGA
1 CGGTGAGATTAGA
97598170 AACAATGGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAA
Found at i:97599734 original size:41 final size:41
Alignment explanation
Indices: 97599660--97599778 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 41
97599650 AACAGAAACT
* * *
97599660 GAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAGACAA
1 GAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAGACAA
* *
97599702 GAGCATTAGCGGCGCTTTTGGTAAAACACCGCTAAAGACCA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACAA
*
97599743 GAGCATTAGCGGCGCTTTTGGTAAAACGCCACTAAA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAA
97599779 AGTCATGTGA
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 57 0.81
42 13 0.19
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACAA
Found at i:97600993 original size:21 final size:21
Alignment explanation
Indices: 97600969--97601011 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
97600959 TATGATTTAA
97600969 GGGTT-GGGGTTTAAGGGTTAG
1 GGGTTAGGGG-TTAAGGGTTAG
*
97600990 GGGTTAGGGGTTAAGTGTTAG
1 GGGTTAGGGGTTAAGGGTTAG
97601011 G
1 G
97601012 TTTACTTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.16, C:0.00, G:0.51, T:0.33
Consensus pattern (21 bp):
GGGTTAGGGGTTAAGGGTTAG
Found at i:97601002 original size:14 final size:15
Alignment explanation
Indices: 97600964--97600994 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
97600954 TGGATTATGA
97600964 TTTAAGGGTT-GGGG
1 TTTAAGGGTTAGGGG
97600978 TTTAAGGGTTAGGGG
1 TTTAAGGGTTAGGGG
97600993 TT
1 TT
97600995 AGGGGTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (15 bp):
TTTAAGGGTTAGGGG
Found at i:97601066 original size:32 final size:32
Alignment explanation
Indices: 97601020--97601090 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
97601010 GGTTTACTTA
*
97601020 AGGA-TTAGACTTTATATATATTAAATGGTTT
1 AGGATTTAGACTTTATATATATTAAATAGTTT
*
97601051 AGGATTTAGGCTTTATATATATTAAATAGTTT
1 AGGATTTAGACTTTATATATATTAAATAGTTT
97601083 AGGATTTA
1 AGGATTTA
97601091 AAGTTAAGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
31 4 0.11
32 33 0.89
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (32 bp):
AGGATTTAGACTTTATATATATTAAATAGTTT
Found at i:97601608 original size:14 final size:13
Alignment explanation
Indices: 97601559--97601610 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
97601549 TTAATTTTTT
97601559 TATTTATAAAAACCA
1 TATTTATAAAAA--A
97601574 -ATTTATAAAAAA
1 TATTTATAAAAAA
* *
97601586 TAGTAATAAAAAA
1 TATTTATAAAAAA
97601599 TATTTTATAAAA
1 TA-TTTATAAAA
97601611 TCACTTAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 1 0.03
13 12 0.39
14 18 0.58
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (13 bp):
TATTTATAAAAAA
Found at i:97601664 original size:23 final size:24
Alignment explanation
Indices: 97601638--97601705 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 24
97601628 TTTAATACAG
97601638 AAAATAAATTTTTTTAGCATAATA
1 AAAATAAATTTTTTTAGCATAATA
97601662 AAACATAATCATTTTATTTA--A-AAT-
1 AAA-ATAA--ATTTT-TTTAGCATAATA
97601686 AAAAT-AATTTTTTGTAGCAT
1 AAAATAAATTTTTT-TAGCAT
97601706 TTTTATAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 17
0.68 0.00 0.32
Matches are distributed among these distances:
19 2 0.06
20 7 0.19
22 2 0.06
23 2 0.06
24 6 0.17
25 7 0.19
26 1 0.03
27 5 0.14
28 4 0.11
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATAAATTTTTTTAGCATAATA
Found at i:97604778 original size:19 final size:21
Alignment explanation
Indices: 97604750--97604797 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
97604740 TTATTATTTA
97604750 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
97604770 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
97604790 TTTTAGTT
1 TTTTAGTT
97604798 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:97604884 original size:29 final size:28
Alignment explanation
Indices: 97604854--97604907 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
97604844 TTCTCAATAT
*
97604854 TTTGATAATGAATTTTA-AATTTTTTATA
1 TTTG-TAATGAATTTTATAATATTTTATA
*
97604882 TTTGTCATGAATTTTATAATATTTTA
1 TTTGTAATGAATTTTATAATATTTTA
97604908 CTTTTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (28 bp):
TTTGTAATGAATTTTATAATATTTTATA
Found at i:97605931 original size:33 final size:33
Alignment explanation
Indices: 97605808--97605950 Score: 121
Period size: 33 Copynumber: 4.3 Consensus size: 33
97605798 TGTTGACTAC
* *
97605808 TGGGGAGGGTGATGTTGAAG-GGTTAGAAGT-TCA
1 TGGGGAGGGTGATGTAGAAGAGG-TAGAA-TCTGA
*
97605841 TGGGGAGGGTGATG-ATGAAGCGGTAGAATCTGA
1 TGGGGAGGGTGATGTA-GAAGAGGTAGAATCTGA
* * * * * *
97605874 TGGTGAAGATGATCTAGAAAAGGTAGAATCTGG
1 TGGGGAGGGTGATGTAGAAGAGGTAGAATCTGA
* * *
97605907 TGGGGAGGGTGATGTAGGAGAGGTACAAGCTGA
1 TGGGGAGGGTGATGTAGAAGAGGTAGAATCTGA
*
97605940 TGGAGAGGGTG
1 TGGGGAGGGTG
97605951 TTTCTGCTAC
Statistics
Matches: 87, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
32 1 0.01
33 83 0.95
34 3 0.03
ACGTcount: A:0.28, C:0.05, G:0.45, T:0.22
Consensus pattern (33 bp):
TGGGGAGGGTGATGTAGAAGAGGTAGAATCTGA
Found at i:97606208 original size:51 final size:51
Alignment explanation
Indices: 97606054--97606211 Score: 235
Period size: 51 Copynumber: 3.1 Consensus size: 51
97606044 GTGAAGTTGC
* * *
97606054 TGCTAATGAATATGCTGGTGATTTTGTAACATCAGATGGAGTGAATAATGT
1 TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
* *
97606105 TACTGATGAATATGTTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
1 TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
* * * *
97606156 TGCTGATGAATATGCTGATGATTTTGCAACATCTGATAGACTGGATAATGT
1 TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
97606207 TGCTG
1 TGCTG
97606212 TTGCACGTAC
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 96 1.00
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.35
Consensus pattern (51 bp):
TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
Found at i:97609716 original size:49 final size:49
Alignment explanation
Indices: 97609663--97609894 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
97609653 CTGGTACGGA
* *
97609663 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** * * *
97609712 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATGCACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * *
97609762 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* *
97609813 TAGTAGCCTGCACTTGGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
97609862 TAGTAGCCTGCATTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
97609895 TCACAATAGA
Statistics
Matches: 153, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 71 0.46
50 46 0.30
51 36 0.24
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:97609836 original size:101 final size:98
Alignment explanation
Indices: 97609663--97609894 Score: 293
Period size: 100 Copynumber: 2.3 Consensus size: 98
97609653 CTGGTACGGA
* * * **
97609663 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* * *
97609728 GTACTACACACGTGACCTAACCATCTGATGCACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
* *
97609762 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* * ** *
97609827 TGGTACTACACATGCGACCAATTATCCGGTACACG
64 TAGTACTACACACGCGACCAACCATCCGATACACG
*
97609862 TAGTAGCCTGCATTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
97609895 TCACAATAGA
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 30 0.26
100 44 0.39
101 40 0.35
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:97610168 original size:27 final size:27
Alignment explanation
Indices: 97610138--97610192 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
97610128 TTCATACAAC
* *
97610138 TCATGTAATAGTAATTTAACATTCAAT
1 TCATGTAACAATAATTTAACATTCAAT
**
97610165 TCATGTAACAATAATTTGCCATTCAAT
1 TCATGTAACAATAATTTAACATTCAAT
97610192 T
1 T
97610193 TCACATGACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (27 bp):
TCATGTAACAATAATTTAACATTCAAT
Found at i:97613847 original size:19 final size:20
Alignment explanation
Indices: 97613812--97613853 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
97613802 CAACCAACTA
97613812 ATTAAAAGGGGAAATCTTCC
1 ATTAAAAGGGGAAATCTTCC
* *
97613832 ATTAAAA-GGTAAATCTTTC
1 ATTAAAAGGGGAAATCTTCC
97613851 ATT
1 ATT
97613854 TTTTGCAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (20 bp):
ATTAAAAGGGGAAATCTTCC
Found at i:97614509 original size:22 final size:22
Alignment explanation
Indices: 97614484--97614528 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
97614474 TCATATGCTT
*
97614484 TTGTAAAGTACATTTATCGAAA
1 TTGTAAAGTACATTTATCCAAA
97614506 TTGTAAAGTACATTTATCCAAA
1 TTGTAAAGTACATTTATCCAAA
97614528 T
1 T
97614529 CATATGCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (22 bp):
TTGTAAAGTACATTTATCCAAA
Done.