Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 295 of 344
Found at i:98424406 original size:19 final size:19
Alignment explanation
Indices: 98424384--98424430 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
98424374 CTTCCTTTCT
98424384 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
98424403 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
98424422 TTTGCATTA
1 TTTGCATTA
98424431 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:98428926 original size:65 final size:60
Alignment explanation
Indices: 98428817--98428941 Score: 187
Period size: 61 Copynumber: 2.0 Consensus size: 60
98428807 TCTACAATAA
*
98428817 CACATTTAGTTAGGAGTATTTGATTCATTTCATAGCATCCTAATTATTTGACATAAAGCAT
1 CACATTTAGTTAGGAGCATTTGATTCATTTCATAGCATCCTAATTATTTGACAT-AAGCAT
*
98428878 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATTTAGTTAGGAGCATTTGATTCA-TT---TCATAGCATCCTAATTATTTGACATAAGCAT
98428942 GGATACATGA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 26 0.45
62 2 0.03
64 6 0.10
65 24 0.41
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (60 bp):
CACATTTAGTTAGGAGCATTTGATTCATTTCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:98429593 original size:44 final size:44
Alignment explanation
Indices: 98429545--98430689 Score: 860
Period size: 44 Copynumber: 26.1 Consensus size: 44
98429535 TGGCGGAGAG
**
98429545 CAGATCGAAGATTA-CAGATTTGGCATCCCTGTATTTATAGGGAA
1 CAGATCGAAGA-TAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * * **
98429589 CAGATCGAAGATAGTAGATCTGACATTCCTATGCTTACAATGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
**
98429633 GCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
** * * * *
98429677 CA-AGTTAAAAACAGTAGATTTGGCATCTCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* ** * * * * *
98429721 TAGATCGAAGATAATAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
** *
98429765 GCAGATCGAAGATTTCAGCA--TGACATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * * *
98429809 CA-AGTTGAAAACAACAGATTTGGCAT-CCTCGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCT-GTGCTTATAGGGAA
* * * * * *
98429853 CAGATCGAAGATAGCAGATCTGACATTCCTATGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
** * *
98429897 GCAGATCGAAGATTTCAGCA--TGGCATCCCTGTACTTATAGTGAA
1 -CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * *
98429941 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * *
98429985 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
**
98430029 GCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * * * **
98430073 CA-AGTTGAAAACAGCAGATTTGACATCCCTGTATTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
** * * * *
98430117 CAGATCGAAGATAATAGATCTGACATTCCTGTGCTTA-CGGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGG-GAA
*
98430161 GCAGATCGAAG--AGC--A--TGGCATCCCAGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
*
98430200 CA-AGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * *
98430244 CAGATTGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* **
98430288 GCAGATTGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * *
98430332 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * *
98430376 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
** ** *
98430420 GCAGATCGAAGATTTCA-ACATGGCATCCCTGTACTTATAGGGAA
1 -CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * *
98430464 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGAGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * *
98430508 CAGATCAAAGATAGCGGATCTGACATTCCTGTGCTTA-CGGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGG-GAA
** *
98430552 GCAGATCGAAGATTTCAGCA--TGGAATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
*
98430596 CA-AGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * *
98430640 CA-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTTTATGGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
98430684 CAGATC
1 CAGATC
98430690 AAAAAAGCAG
Statistics
Matches: 863, Mismatches: 182, Indels: 112
0.75 0.16 0.10
Matches are distributed among these distances:
37 1 0.00
38 7 0.01
39 17 0.02
40 5 0.01
41 1 0.00
42 14 0.02
43 79 0.09
44 611 0.71
45 122 0.14
46 6 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
Found at i:98429726 original size:132 final size:132
Alignment explanation
Indices: 98429559--98430672 Score: 1792
Period size: 132 Copynumber: 8.5 Consensus size: 132
98429549 TCGAAGATTA
** * *
98429559 CAGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTATGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* *
98429624 TACAATGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
98429689 AG
131 AG
* * * **
98429691 TAGATTTGGCATCTCTGTGCTTATAGGGAATAGATCGAAGATAATAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
*
98429756 TACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
*
98429821 AA
131 AG
*
98429823 CAGATTTGGCAT-CCTCGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTATGC
1 CAGATTTGGCATCCCT-GTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
* *
98429887 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTACTTATAGTGAACAAGTTGAAAA
65 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
98429952 CAG
130 CAG
98429955 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
98430020 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
98430085 AG
131 AG
* ** **
98430087 CAGATTTGACATCCCTGTATTTATAGGGAACAGATCGAAGATAATAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* * * *
98430152 TACGGTGAAGCAGATCGAAG-----AGCATGGCATCCCAGTGCTTATAGGGAACAAGTTGAAGAT
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
98430212 AG
131 AG
*
98430214 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATTGAAGATAGCAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
*
98430279 TACAGTGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
98430344 AG
131 AG
98430346 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* *
98430411 TACAGTGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTACTTATAGGGAACAAGTTGAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
98430476 AG
131 AG
* * *
98430478 CAGATTTGGCATCCCTGTGCTTATAGAGAACAGATCAAAGATAGCGGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* * * *
98430543 TACGGTGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGCTTATAGGGAACAAGTTGAAGAT
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
98430608 AG
131 AG
* * * * *
98430610 CAGATTTGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAGACAGCAGATTTGGCATCCCTGTG
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATCTGACATTCCTGTG
98430673 TTTATGGGGA
Statistics
Matches: 909, Mismatches: 65, Indels: 16
0.92 0.07 0.02
Matches are distributed among these distances:
127 116 0.13
131 3 0.00
132 787 0.87
133 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
AG
Found at i:98430414 original size:523 final size:524
Alignment explanation
Indices: 98429559--98430641 Score: 1837
Period size: 523 Copynumber: 2.1 Consensus size: 524
98429549 TCGAAGATTA
*
98429559 CAGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTATGCT
1 CAGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAATAGATCTGACATTCCTATGCT
*
98429624 TACAATGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAAC
66 TACAATGAAGCAGATCGAAG---T-AGCATGGCATCCCAGTGCTTATAGGGAACAAGTTAAAAAC
* * * *
98429689 AGTAGATTTGGCATCTCTGTGCTTATAGGGAATAGATCGAAGATAATAGATCTGACATTCCTGTG
127 AGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTG
98429754 CTTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAA
192 CTTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAA
98429819 ACAACAGATTTGGCATCCTCGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTA
257 ACAACAGATTTGGCATCCTCGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTA
* *
98429884 TGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTACTTATAGTGAACAAGTTGA
322 TGCTTACAGTGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTACTTATAGGGAACAAGTTGA
* *
98429949 AAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCC
387 AAACAGCAGATTTGGCATCCCTGTGCTTATAGAGAACAGATCAAAGATAGCAGATCTGACATTCC
*
98430014 TGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTT
452 TGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGCTTATAGGGAACAAGTT
98430079 GAAAACAG
517 GAAAACAG
* *
98430087 CAGATTTGACATCCCTGTATTTATAGGGAACAGATCGAAGATAATAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAATAGATCTGACATTCCTATGCT
** * * *
98430152 TACGGTGAAGCAGATCGAAG-AGCATGGCATCCCAGTGCTTATAGGGAACAAGTTGAAGATAGCA
66 TACAATGAAGCAGATCGAAGTAGCATGGCATCCCAGTGCTTATAGGGAACAAGTTAAAAACAGCA
* *
98430216 GATTTGGCATCCCTGTGCTTATAGGGAACAGATTGAAGATAGCAGATCTGACATTCCTGTGCTTA
131 GATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGCTTA
* * *
98430281 CAGTGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAG
196 CAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAA
*
98430346 CAGATTTGGCATCC-CTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
261 CAGATTTGGCATCCTC-GTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTATGC
98430410 TTACAGTGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTACTTATAGGGAACAAGTTGAAAA
325 TTACAGTGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTACTTATAGGGAACAAGTTGAAAA
*
98430475 CAGCAGATTTGGCATCCCTGTGCTTATAGAGAACAGATCAAAGATAGCGGATCTGACATTCCTGT
390 CAGCAGATTTGGCATCCCTGTGCTTATAGAGAACAGATCAAAGATAGCAGATCTGACATTCCTGT
*
98430540 GCTTACGGTGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGCTTATAGGGAACAAGTTGAA
455 GCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGCTTATAGGGAACAAGTTGAA
* *
98430605 GATAG
520 AACAG
**
98430610 CAGATTTGGCATCCCTGTGCTTATAGGGAACA
1 CAGATTTGGCATCCCTGTATTTATAGGGAACA
98430642 AGTTGAAGAC
Statistics
Matches: 523, Mismatches: 31, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
522 1 0.00
523 442 0.85
528 80 0.15
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (524 bp):
CAGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAATAGATCTGACATTCCTATGCT
TACAATGAAGCAGATCGAAGTAGCATGGCATCCCAGTGCTTATAGGGAACAAGTTAAAAACAGCA
GATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGCTTA
CAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAA
CAGATTTGGCATCCTCGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTATGCT
TACAGTGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTACTTATAGGGAACAAGTTGAAAAC
AGCAGATTTGGCATCCCTGTGCTTATAGAGAACAGATCAAAGATAGCAGATCTGACATTCCTGTG
CTTACAGTGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGCTTATAGGGAACAAGTTGAAA
ACAG
Found at i:98430976 original size:13 final size:13
Alignment explanation
Indices: 98430958--98431099 Score: 121
Period size: 13 Copynumber: 11.5 Consensus size: 13
98430948 AAATATCTTT
98430958 ACTCCACTAAACC
1 ACTCCACTAAACC
98430971 ACT-C-C--AACC
1 ACTCCACTAAACC
98430980 ACT-C-C-AA-CC
1 ACTCCACTAAACC
98430989 ACTCCACTAAACC
1 ACTCCACTAAACC
*
98431002 ACTCCAACCACTCCAACC
1 ACT----CCACT-AAACC
98431020 ACTCCACTAAACC
1 ACTCCACTAAACC
*
98431033 ACTACACTAAACC
1 ACTCCACTAAACC
98431046 ACTCCACTAAACC
1 ACTCCACTAAACC
98431059 A--CC-CT-AACC
1 ACTCCACTAAACC
98431068 AC-CCTACTAAACC
1 ACTCC-ACTAAACC
98431081 ACTCCACTAAACC
1 ACTCCACTAAACC
98431094 ACTCCA
1 ACTCCA
98431100 ACCACTCCAC
Statistics
Matches: 110, Mismatches: 4, Indels: 30
0.76 0.03 0.21
Matches are distributed among these distances:
9 19 0.17
10 6 0.05
11 4 0.04
12 5 0.05
13 57 0.52
14 7 0.06
17 5 0.05
18 7 0.06
ACGTcount: A:0.37, C:0.49, G:0.00, T:0.14
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:98430981 original size:9 final size:9
Alignment explanation
Indices: 98430967--98431025 Score: 82
Period size: 9 Copynumber: 6.1 Consensus size: 9
98430957 TACTCCACTA
98430967 AACCACTCC
1 AACCACTCC
98430976 AACCACTCC
1 AACCACTCC
98430985 AACCACTCCAC
1 AACCACT-C-C
98430996 TAAACCACTCC
1 --AACCACTCC
98431007 AACCACTCC
1 AACCACTCC
98431016 AACCACTCC
1 AACCACTCC
98431025 A
1 A
98431026 CTAAACCACT
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
9 35 0.76
10 1 0.02
11 2 0.04
12 1 0.02
13 7 0.15
ACGTcount: A:0.36, C:0.53, G:0.00, T:0.12
Consensus pattern (9 bp):
AACCACTCC
Found at i:98430996 original size:31 final size:31
Alignment explanation
Indices: 98430958--98431108 Score: 197
Period size: 31 Copynumber: 4.9 Consensus size: 31
98430948 AAATATCTTT
98430958 ACTCCACTAAACCACTCCAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACCACTCCAACC
98430989 ACTCCACTAAACCACTCCAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACCACTCCAACC
*
98431020 ACTCCACTAAACCACT---A-CACT-AAACC
1 ACTCCACTAAACCACTCCAACCACTCCAACC
*
98431046 ACTCCACTAAACCAC-CCTAACCACCCTACTAAACC
1 ACTCCACTAAACCACTCC-AACCA--CT-C-CAACC
98431081 ACTCCACTAAACCACTCCAACCACTCCA
1 ACTCCACTAAACCACTCCAACCACTCCA
98431109 CTTGCCTACA
Statistics
Matches: 107, Mismatches: 2, Indels: 22
0.82 0.02 0.17
Matches are distributed among these distances:
26 19 0.18
27 4 0.04
28 1 0.01
29 1 0.01
30 2 0.02
31 48 0.45
32 3 0.03
33 2 0.02
35 25 0.23
36 2 0.02
ACGTcount: A:0.37, C:0.49, G:0.00, T:0.14
Consensus pattern (31 bp):
ACTCCACTAAACCACTCCAACCACTCCAACC
Found at i:98431068 original size:35 final size:35
Alignment explanation
Indices: 98431029--98431110 Score: 123
Period size: 35 Copynumber: 2.3 Consensus size: 35
98431019 CACTCCACTA
*
98431029 AACCACTACACTAAACCACTCCACTAAACCAC-CC
1 AACCACTCCACTAAACCACTCCACTAAACCACTCC
98431063 TAACCAC-CCTACTAAACCACTCCACTAAACCACTCC
1 -AACCACTCC-ACTAAACCACTCCACTAAACCACTCC
98431099 AACCACTCCACT
1 AACCACTCCACT
98431111 TGCCTACAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
34 1 0.02
35 38 0.88
36 4 0.09
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.15
Consensus pattern (35 bp):
AACCACTCCACTAAACCACTCCACTAAACCACTCC
Found at i:98434968 original size:10 final size:10
Alignment explanation
Indices: 98434939--98434968 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
98434929 CAAAATTTTA
98434939 TTTTAATATT
1 TTTTAATATT
98434949 TTTTATATATT
1 TTTTA-ATATT
98434960 TTTTAATAT
1 TTTTAATAT
98434969 GCACAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTAATATT
Found at i:98436076 original size:31 final size:30
Alignment explanation
Indices: 98436031--98436111 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 30
98436021 AATGCGTATG
*
98436031 ATTAAATCAAAATTAAAGTTTCAAC-TATATA
1 ATTAAA-CCAAATTAAAGTTTC-ACGTATATA
* * *
98436062 TTTAAACCACAATTAGAGTTTCACGTGTATA
1 ATTAAACCA-AATTAAAGTTTCACGTATATA
*
98436093 ATTACACCAAATTAAAGTT
1 ATTAAACCAAATTAAAGTT
98436112 CGTGTATGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
30 13 0.32
31 28 0.68
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (30 bp):
ATTAAACCAAATTAAAGTTTCACGTATATA
Found at i:98436774 original size:23 final size:20
Alignment explanation
Indices: 98436746--98436800 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
98436736 AACTATAACA
98436746 AAATATAAATATATTAAATTATT
1 AAATATAAATATATTAAA--A-T
*
98436769 AAATAT---TATGTTAAAAT
1 AAATATAAATATATTAAAAT
98436786 AAATATAAATATATT
1 AAATATAAATATATT
98436801 TTTTTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 9
0.71 0.05 0.24
Matches are distributed among these distances:
17 7 0.26
18 1 0.04
20 13 0.48
23 6 0.22
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
AAATATAAATATATTAAAAT
Found at i:98448524 original size:75 final size:75
Alignment explanation
Indices: 98448400--98448592 Score: 325
Period size: 75 Copynumber: 2.6 Consensus size: 75
98448390 ACGTGAGCCA
*
98448400 AGGCTCAACTCACCTTTCGCAA-TATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCG
1 AGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCG
*
98448464 GCGTGTCCCG
66 GCGTGCCCCG
* * *
98448474 AGGCTCTACTCACCTCTCGCAATTATGAGTTGATTTTTTTTAAAGTAGAATTTGAAAATACTTCG
1 AGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCG
98448539 GCGTGCCCCG
66 GCGTGCCCCG
*
98448549 AGGTTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAA
1 AGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAA
98448593 ACAGAAATGA
Statistics
Matches: 110, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 20 0.18
75 90 0.82
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCG
GCGTGCCCCG
Found at i:98460870 original size:28 final size:27
Alignment explanation
Indices: 98460839--98460895 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
98460829 TAAAATAGAA
* *
98460839 TATACACAAAGATTTAAAATAAATCATG
1 TATACA-AAAAATTTAAAATAAATAATG
*
98460867 TATATAAAAAATTTAAAATAAATAATG
1 TATACAAAAAATTTAAAATAAATAATG
98460894 TA
1 TA
98460896 AAAATAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (27 bp):
TATACAAAAAATTTAAAATAAATAATG
Found at i:98461210 original size:29 final size:30
Alignment explanation
Indices: 98461174--98461237 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 30
98461164 CATTTAAAAA
*
98461174 AGTATG-TATATATATACATAATAATTTAG
1 AGTATGATATATATATACATAACAATTTAG
98461203 AGTATGTATATATATATACATAACAATTTAG
1 AGTATG-ATATATATATACATAACAATTTAG
98461234 AGTA
1 AGTA
98461238 AAAAGATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 6 0.19
31 26 0.81
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (30 bp):
AGTATGATATATATATACATAACAATTTAG
Found at i:98461251 original size:31 final size:31
Alignment explanation
Indices: 98461185--98461251 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
98461175 GTATGTATAT
* *** * *
98461185 ATATACATAATAATTTAGAGTATGTATATAT
1 ATATACATAACAATTTAGAGTAAAAAGATAC
98461216 ATATACATAACAATTTAGAGTAAAAAGATAC
1 ATATACATAACAATTTAGAGTAAAAAGATAC
98461247 ATATA
1 ATATA
98461252 AAAATTTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (31 bp):
ATATACATAACAATTTAGAGTAAAAAGATAC
Found at i:98461732 original size:26 final size:24
Alignment explanation
Indices: 98461698--98461757 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
98461688 GCAATAATAG
98461698 AATTAATAATAAAAATAAAGTTGATT
1 AATTAATAA-AAAAA-AAAGTTGATT
**
98461724 AATTAATAAAAAAAATGGTTGATT
1 AATTAATAAAAAAAAAAGTTGATT
98461748 AATTAA-AAAA
1 AATTAATAAAA
98461758 GGACTATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 4 0.12
24 14 0.44
25 5 0.16
26 9 0.28
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (24 bp):
AATTAATAAAAAAAAAAGTTGATT
Found at i:98461744 original size:24 final size:23
Alignment explanation
Indices: 98461699--98461757 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 23
98461689 CAATAATAGA
98461699 ATTAA-TAATAAAAATAAAGTTG
1 ATTAATTAATAAAAATAAAGTTG
98461721 ATTAATTAATAAAAA-AAATGGTTG
1 ATTAATTAATAAAAATAAA--GTTG
98461745 ATTAATTAA-AAAA
1 ATTAATTAATAAAA
98461758 GGACTATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.24
23 13 0.38
24 13 0.38
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (23 bp):
ATTAATTAATAAAAATAAAGTTG
Found at i:98465026 original size:87 final size:86
Alignment explanation
Indices: 98464880--98465053 Score: 296
Period size: 87 Copynumber: 2.0 Consensus size: 86
98464870 ATATTAAGAT
* *
98464880 CTTTTTAATAAATGTCTTTACCCTTATTCTCAAATCACCAAATTAATTCCTATTTTCAACAAAAA
1 CTTTTGAATAAATGCCTTTACCCTTATTCTCAAATCACCAAATTAATTCCTATTTTCAACAAAAA
98464945 TCAACACCATCGTGCCGCTCAC
66 TCAACA-CATCGTGCCGCTCAC
*
98464967 CTTTTGAATAAATGCCTTTACTCTTATTCTCAAATCACCAAATTAATT-CTCATTTTCAACAAAA
1 CTTTTGAATAAATGCCTTTACCCTTATTCTCAAATCACCAAATTAATTCCT-ATTTTCAACAAAA
98465031 ATCAACACATCGTGCCGCTCAC
65 ATCAACACATCGTGCCGCTCAC
98465053 C
1 C
98465054 AACCGCTAAT
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
86 18 0.22
87 65 0.78
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (86 bp):
CTTTTGAATAAATGCCTTTACCCTTATTCTCAAATCACCAAATTAATTCCTATTTTCAACAAAAA
TCAACACATCGTGCCGCTCAC
Found at i:98465269 original size:14 final size:13
Alignment explanation
Indices: 98465238--98465298 Score: 61
Period size: 13 Copynumber: 4.6 Consensus size: 13
98465228 AATATGTTTC
98465238 TTAATTTTATAAT
1 TTAATTTTATAAT
* *
98465251 CTAATTTTTTAAAT
1 TTAATTTTAT-AAT
*
98465265 TTAA-TTTATATT
1 TTAATTTTATAAT
*
98465277 TTAATTGTATAAT
1 TTAATTTTATAAT
98465290 TTAAATTTT
1 TT-AATTTT
98465299 CATTAGATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
12 6 0.16
13 20 0.54
14 11 0.30
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (13 bp):
TTAATTTTATAAT
Found at i:98465743 original size:29 final size:33
Alignment explanation
Indices: 98465696--98465755 Score: 83
Period size: 30 Copynumber: 1.9 Consensus size: 33
98465686 ATCTTAATCA
98465696 ATAAATAATATTTCATTTA-AATTAAAATAAAT
1 ATAAATAATATTTCATTTATAATTAAAATAAAT
*
98465728 ATAAAT-AT-TTTC-TTTATATTTAAAATAA
1 ATAAATAATATTTCATTTATAATTAAAATAA
98465756 CTTTCTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 4 0.15
30 14 0.54
31 2 0.08
32 6 0.23
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (33 bp):
ATAAATAATATTTCATTTATAATTAAAATAAAT
Found at i:98475106 original size:12 final size:12
Alignment explanation
Indices: 98475089--98475113 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98475079 TATGTATGTT
98475089 TGAAAATTTTTA
1 TGAAAATTTTTA
98475101 TGAAAATTTTTA
1 TGAAAATTTTTA
98475113 T
1 T
98475114 TATTATTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:98476892 original size:16 final size:16
Alignment explanation
Indices: 98476867--98476906 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
98476857 CTAGATCGGT
*
98476867 AAAAGCCGAAAAGCCA
1 AAAAGTCGAAAAGCCA
98476883 AAAAGTCGAAAAGCCA
1 AAAAGTCGAAAAGCCA
98476899 AAAAGTCG
1 AAAAGTCG
98476907 GCATTTGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.55, C:0.20, G:0.20, T:0.05
Consensus pattern (16 bp):
AAAAGTCGAAAAGCCA
Found at i:98477559 original size:20 final size:21
Alignment explanation
Indices: 98477516--98477561 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
98477506 ACTGTTCTGT
98477516 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
98477536 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
98477555 TATGGGC
1 TATGGGC
98477562 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:98479952 original size:12 final size:12
Alignment explanation
Indices: 98479937--98479962 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98479927 TCCATTTGAG
98479937 TTTTTGTTTGCT
1 TTTTTGTTTGCT
98479949 TTTTTGTTTGCT
1 TTTTTGTTTGCT
98479961 TT
1 TT
98479963 ATTAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.15, T:0.77
Consensus pattern (12 bp):
TTTTTGTTTGCT
Found at i:98482873 original size:21 final size:21
Alignment explanation
Indices: 98482809--98482876 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
98482799 CACATGGCCA
*
98482809 TGTGACTGAGGCACACGCCCG
1 TGTGACTGAGGCACAAGCCCG
* ** *
98482830 TATGAAGAGAGGCACGCAG-CCG
1 TGTG-ACTGAGGCAC-AAGCCCG
98482852 TGTGACTGAGGCACAAGCCCG
1 TGTGACTGAGGCACAAGCCCG
98482873 TGTG
1 TGTG
98482877 GACCAGGGAC
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
20 2 0.06
21 18 0.51
22 14 0.40
23 1 0.03
ACGTcount: A:0.24, C:0.26, G:0.35, T:0.15
Consensus pattern (21 bp):
TGTGACTGAGGCACAAGCCCG
Found at i:98485226 original size:15 final size:15
Alignment explanation
Indices: 98485206--98485236 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
98485196 ATACATATTT
98485206 TTTTCTTATTCCTAA
1 TTTTCTTATTCCTAA
98485221 TTTTCTTATTCCTAA
1 TTTTCTTATTCCTAA
98485236 T
1 T
98485237 CTAAAACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTCTTATTCCTAA
Found at i:98485304 original size:44 final size:44
Alignment explanation
Indices: 98485238--98485428 Score: 346
Period size: 44 Copynumber: 4.3 Consensus size: 44
98485228 ATTCCTAATC
* * *
98485238 TAAAACACATTAAATTACAATACAATATACATGCATATTTAATT
1 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
98485282 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
1 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
98485326 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
1 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
98485370 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
1 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
*
98485414 TCAAACACATTAAAT
1 TAAAACACATTAAAT
98485429 ATATTAATTC
Statistics
Matches: 143, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 143 1.00
ACGTcount: A:0.50, C:0.13, G:0.01, T:0.37
Consensus pattern (44 bp):
TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
Found at i:98485439 original size:23 final size:23
Alignment explanation
Indices: 98485372--98485440 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 23
98485362 ATTTATTTTA
*
98485372 AAACACATTAAAT-TA-TAATAC
1 AAACACATTAAATATATTAATTC
* * *
98485393 AATATACA-TACATAT-TTATTTTC
1 AA-ACACATTAAATATATTA-ATTC
98485416 AAACACATTAAATATATTAATTC
1 AAACACATTAAATATATTAATTC
98485439 AA
1 AA
98485441 CTGAAAATTA
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
21 6 0.17
22 11 0.31
23 15 0.43
24 3 0.09
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (23 bp):
AAACACATTAAATATATTAATTC
Found at i:98485629 original size:36 final size:36
Alignment explanation
Indices: 98485582--98485661 Score: 106
Period size: 36 Copynumber: 2.2 Consensus size: 36
98485572 GAATGGCCAG
* * *
98485582 CACCAAGGCCTGCCAGAGATGGTCTTACATTGGCCGA
1 CACCAA-GCCTGCCACAAATGGCCTTACATTGGCCGA
* *
98485619 CACCAAGCCTGCCACAAATGGCCTTACATTGGCTGG
1 CACCAAGCCTGCCACAAATGGCCTTACATTGGCCGA
98485655 CACCAAG
1 CACCAAG
98485662 TTGAAGCCTG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
36 32 0.84
37 6 0.16
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.17
Consensus pattern (36 bp):
CACCAAGCCTGCCACAAATGGCCTTACATTGGCCGA
Found at i:98485880 original size:20 final size:20
Alignment explanation
Indices: 98485747--98485880 Score: 80
Period size: 20 Copynumber: 6.5 Consensus size: 20
98485737 TAAATGAATG
*
98485747 TGAAATGAAAATAAAGTATAGAA
1 TGAAATG-AAATAAA-TTTA-AA
*
98485770 TGAAATGAAATAAATTTCAA
1 TGAAATGAAATAAATTTAAA
*
98485790 TGAGAT--AA-AAA-TTAATA
1 TGAAATGAAATAAATTTAA-A
* * *
98485807 TGAAA-AAAACGTAAGTTAAAA
1 TGAAATGAAA--TAAATTTAAA
98485828 TGGAAAATGAAATAAATTTAAA
1 T-G-AAATGAAATAAATTTAAA
* *
98485850 TGAAAAGAAATAAATTTAGA
1 TGAAATGAAATAAATTTAAA
*
98485870 TGAAATCAAAT
1 TGAAATGAAAT
98485881 GAGAAATGAA
Statistics
Matches: 87, Mismatches: 14, Indels: 23
0.70 0.11 0.19
Matches are distributed among these distances:
16 3 0.03
17 8 0.09
18 4 0.05
20 32 0.37
21 7 0.08
22 20 0.23
23 10 0.11
24 3 0.03
ACGTcount: A:0.59, C:0.02, G:0.13, T:0.25
Consensus pattern (20 bp):
TGAAATGAAATAAATTTAAA
Found at i:98485895 original size:23 final size:23
Alignment explanation
Indices: 98485869--98485922 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
98485859 ATAAATTTAG
98485869 ATGAAATCAAATGAGAAATGAAA
1 ATGAAATCAAATGAGAAATGAAA
*
98485892 ATGAAATCAATTGAGAAATGAAA
1 ATGAAATCAAATGAGAAATGAAA
98485915 ATTGAAAT
1 A-TGAAAT
98485923 TGAAACTGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.57, C:0.04, G:0.17, T:0.22
Consensus pattern (23 bp):
ATGAAATCAAATGAGAAATGAAA
Found at i:98487604 original size:90 final size:90
Alignment explanation
Indices: 98487455--98487870 Score: 597
Period size: 90 Copynumber: 4.6 Consensus size: 90
98487445 ATTCTAGAAT
* * * * * *
98487455 ATTAATACACAAAAATATAAAATTCAAAC-AAAAATAATACGGACTAAAATAAATTTAAACACCC
1 ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
98487519 AACAAACTACAAATAGATGGGTAAA
66 AACAAACTACAAATAGATGGGTAAA
* *
98487544 ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCT
1 ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
98487609 AACAAACTACAAATAGATGGGTAAA
66 AACAAACTACAAATAGATGGGTAAA
* * ** **
98487634 ATTAATGCATGAAAATTTTAGTTTCAAACT-CTATATAATACAAAC-AAATTAAATTTAAACACC
1 ATTAATACACGAAAATTTTAAATTCAAACTAC-ATATAATACGGACTAAATTAAATTTAAACACC
*
98487697 CAACAAACTACAAACAGATGGGTAAA
65 CAACAAACTACAAATAGATGGGTAAA
** * * *
98487723 ATTAATGTACGAAAATTTTAATTTCAAACT-CTATATAATACAGATTAAATTAAATTTAAACACC
1 ATTAATACACGAAAATTTTAAATTCAAACTAC-ATATAATACGGACTAAATTAAATTTAAACACC
98487787 CAACAAACTACAAATAGATGGGTAAA
65 CAACAAACTACAAATAGATGGGTAAA
*
98487813 ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACGGACTAAATTAAATTTA
1 ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTA
98487871 CAAATAGAAA
Statistics
Matches: 296, Mismatches: 27, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
89 110 0.37
90 185 0.62
91 1 0.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (90 bp):
ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
AACAAACTACAAATAGATGGGTAAA
Found at i:98487777 original size:179 final size:180
Alignment explanation
Indices: 98487455--98487870 Score: 572
Period size: 179 Copynumber: 2.3 Consensus size: 180
98487445 ATTCTAGAAT
* * * * * * ** *
98487455 ATTAATACACAAAAATATAAAATTCAAAC-AAAAATAATACGGACTAAAATAAATTTAAACACCC
1 ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACAAACTAAATTAAATTTAAACACCC
*
98487519 AACAAACTACAAATAGATGGGTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATA
66 AACAAACTACAAACAGATGGGTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATA
* *
98487584 CGGACTAAATTAAATTTAAACACCTAACAAACTACAAATAGATGGGTAAA
131 CAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
* * *
98487634 ATTAATGCATGAAAATTTT-AGTTTCAAACT-CTATATAATACAAAC-AAATTAAATTTAAACAC
1 ATTAATACACGAAAATTTTAAATTT-AAACTAC-ATATAATACAAACTAAATTAAATTTAAACAC
** * *
98487696 CCAACAAACTACAAACAGATGGGTAAAATTAATGTACGAAAATTTTAATTTCAAACT-CTATATA
64 CCAACAAACTACAAACAGATGGGTAAAATTAATACACAAAAATTTTAAATTCAAACTAC-ATATA
*
98487760 ATACAGATTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
128 ATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
**
98487813 ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACGGACTAAATTAAATTTA
1 ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACAAACTAAATTAAATTTA
98487871 CAAATAGAAA
Statistics
Matches: 205, Mismatches: 25, Indels: 13
0.84 0.10 0.05
Matches are distributed among these distances:
178 4 0.02
179 174 0.85
180 27 0.13
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (180 bp):
ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACAAACTAAATTAAATTTAAACACCC
AACAAACTACAAACAGATGGGTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATA
CAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
Found at i:98487906 original size:179 final size:178
Alignment explanation
Indices: 98487504--98487917 Score: 489
Period size: 179 Copynumber: 2.3 Consensus size: 178
98487494 CGGACTAAAA
* * * * * *
98487504 TAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAAATTAATACACAAAAATTTTAAATTC
1 TAAATTTAAACACACAAAAAAATACAAACA-ATGGCTAAAATTAATACACGAAAATTTTAAATTC
* *
98487569 AAACTACATATAATACGGACTAAATTAAATTTAAACACCTAACAAACTACAAATAGATGGGTAAA
65 AAACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
* * *
98487634 ATTAATGCATGAAAATTTTAGTTTCAAACTCTATATAATACAAACAAAT
130 ATTAATACACGAAAATTTTAATTTCAAACTCTATATAATACAAACAAAT
* * * * ** *
98487683 TAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAAATTAATGTACGAAAATTTTAATTTC
1 TAAATTTAAACACACAAAAAAATACAAACA-ATGGCTAAAATTAATACACGAAAATTTTAAATTC
*
98487748 AAACT-CTATATAATACAGATTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAA
65 AAACTAC-ATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAA
**
98487812 AATTAATACACGAAAATTTTAAATTT-AAACTAC-ATATAATACGGACTAAAT
129 AATTAATACACGAAAATTTT-AATTTCAAACT-CTATATAATACAAAC-AAAT
* * *
98487863 TAAATTTACAA-ATAGAAAAAAATACAAAC-AT-TCTAAGAAATTAATACACGAAAAT
1 TAAATTTA-AACACACAAAAAAATACAAACAATGGCT-A-AAATTAATACACGAAAAT
98487918 ATAAAAATGA
Statistics
Matches: 206, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
177 1 0.00
178 4 0.02
179 169 0.82
180 30 0.15
181 2 0.01
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (178 bp):
TAAATTTAAACACACAAAAAAATACAAACAATGGCTAAAATTAATACACGAAAATTTTAAATTCA
AACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAAA
TTAATACACGAAAATTTTAATTTCAAACTCTATATAATACAAACAAAT
Found at i:98488714 original size:113 final size:114
Alignment explanation
Indices: 98488527--98488758 Score: 326
Period size: 113 Copynumber: 2.0 Consensus size: 114
98488517 TTGAAAAAGG
* *
98488527 GGTGCTGGCCATCAGTGTCCCAAAGTAAAAAAAAAAGTGTCTTAGGACCCAAAAAATGTACTTGA
1 GGTGCCGGCCATCAGTGGCCCAAAGTAAAAAAAAAAGTGTCTTAGGACCCAAAAAATGTACTTGA
* * *
98488592 TGCCGGCCATCTACTGGCCAGCACCCAAAATTTTTTTTTTAAATGAC-ACT
66 TGCCAGCCATCTACTGGCCAACACCC-AAATTTTTTTTTAAAATGACTA-T
* * * *
98488642 GGTGCCGGCCATCAGTGGCCTAAAGT-AAAAAAAAA-TGTCTTGGGACCCAAAAAATGTATTTGG
1 GGTGCCGGCCATCAGTGGCCCAAAGTAAAAAAAAAAGTGTCTTAGGACCCAAAAAATGTACTTGA
* *
98488705 TGCCAGCCATCTATTGGTCAACACCCAAATTTTTTTTTAAAATGACTAT
66 TGCCAGCCATCTACTGGCCAACACCCAAATTTTTTTTTAAAATGACTAT
98488754 GGTGC
1 GGTGC
98488759 TGACCATTAC
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
112 25 0.24
113 48 0.46
114 9 0.09
115 23 0.22
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (114 bp):
GGTGCCGGCCATCAGTGGCCCAAAGTAAAAAAAAAAGTGTCTTAGGACCCAAAAAATGTACTTGA
TGCCAGCCATCTACTGGCCAACACCCAAATTTTTTTTTAAAATGACTAT
Found at i:98494997 original size:40 final size:39
Alignment explanation
Indices: 98494941--98495082 Score: 169
Period size: 40 Copynumber: 3.6 Consensus size: 39
98494931 AAGTGTAAAT
* *
98494941 AGGGGCACGAAAGTGC-ATTCAGGGGTACTGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACT-AA-TACAAAC
* *
98494981 AGGGGCACGTATGTGCAATTTAGGGGTACCTAATACAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTA-CTAATACAAAC
* * *
98495021 AAGGGCATGTATGTGCAATTCAGGGGTACCAAATACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTA-CTAATACAAAC
*
98495061 AGGGCCACGTATGTGCAATTCA
1 AGGGGCACGTATGTGCAATTCA
98495083 CAATATTTTT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
40 74 0.84
41 12 0.14
42 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (39 bp):
AGGGGCACGTATGTGCAATTCAGGGGTACTAATACAAAC
Found at i:98497800 original size:18 final size:18
Alignment explanation
Indices: 98497773--98497808 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
98497763 TAATTTCAAT
*
98497773 TTTAATTTTAAATTTTTA
1 TTTAAATTTAAATTTTTA
*
98497791 TTTAAATTTAATTTTTTA
1 TTTAAATTTAAATTTTTA
98497809 AAAATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTAAATTTAAATTTTTA
Found at i:98504328 original size:161 final size:158
Alignment explanation
Indices: 98503876--98504643 Score: 609
Period size: 155 Copynumber: 4.8 Consensus size: 158
98503866 GTTAAATTCT
* * * * * *
98503876 AGTCGTTTTGGTAATCAAATGATATCCCATTTTGTGGTTACTTATAAAGAAG-TGGGAGTTTTAA
1 AGTCATTTTGGTAACCAGATGATAACCCTTTTTGTGGTTACTTATAAAGAAGAT-AGAGTTTTAA
* * * ** * *
98503940 --T--GTGAGTGATATGAACTAAATTTCATGTTGGACATGGCTAGAATGGATTTTATCTTGAAAA
65 GGTCAGTGGGTGATATAAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAAAA
* * *
98504001 TGAGTTTTGCTCTGGTTATTGTCTAAAATGTC
130 TGAG-CTTACTTTGGTTATTGTC--AAATGTC
* * * ***** * * *
98504033 AGTCATTTTAGTAA-TAGGGTGATATTTGATTTTGTGGTCACTTACAAAGAAG-TGAAAGTTTTA
1 AGTCATTTTGGTAACCA-GATGATAACCCTTTTTGTGGTTACTTATAAAGAAGAT-AGAGTTTTA
* * *
98504096 ATGTCATTGGGTGATTATAAAGTAAAAATGTATAATTCATGTTGGACATGTTTAGAATGGA-ATT
64 AGGTCAGTGGGTGA-TATAAAGT---AA---AT--TTCATGTTGGACATGATTAGAATGGATA-T
* * *
98504160 TATCTTGAAAATGAGCTTAATTTGGTTATTGTTAAATGTC
119 GATCTTGAAAATGAGCTTACTTTGGTTATTGTCAAATGTC
* **
98504200 AGTCATTTTGGTAACCGGATGATAACCCTTTTTGTAATTACTTATAAAGAAGAAACTAGAGTTTT
1 AGTCATTTTGGTAACCAGATGATAACCCTTTTTGTGGTTACTTATAAAGAAG--A-TAGAGTTTT
* *
98504265 AAGGTCAGTGGGTAATATGAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAA
63 AAGGTCAGTGGGTGATATAAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAA
*
98504330 AATGGGCTTACTTTGGTTATTGTCAAATGTC
128 AATGAGCTTACTTTGGTTATTGTCAAATGTC
*
98504361 AGTCA-TTTGAGTAACCAGATGAT-A-CCTGGATTTGTGGTTACTTAT--A-AAGA-AGAGTTTT
1 AGTCATTTTG-GTAACCAGATGATAACCCT--TTTTGTGGTTACTTATAAAGAAGATAGAGTTTT
* * * ** *
98504419 AAGGTCAGCGGGTGATATTTAAGTAAATTTCATGTTGGACATGTTTACTACGGATATGATCTTGA
63 AAGGTCAGTGGGTGATA-TAAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGA
* *
98504484 AAACGAG-TCTACTTTGGTTATCGTCAAATGTC
127 AAATGAGCT-TACTTTGGTTATTGTCAAATGTC
* * * * *** *
98504516 AGTTATTTTGGTAACCTGACGATATCTAATTTTGTGGTTACTTATAAAGAAG-TGGAAGTTTTAA
1 AGTCATTTTGGTAACCAGATGATAACCCTTTTTGTGGTTACTTATAAAGAAGATAG-AGTTTTAA
* * * * * * *
98504580 GGTAAATGGGTGATTTAAAGTAAATTTTATGTTGGCCAT-AGTTAGAATGGACATCATCTTGAAA
65 GGTCAGTGGGTGATATAAAGTAAATTTCATGTTGGACATGA-TTAGAATGGATATGATCTTGAAA
98504644 CAAATTATAA
Statistics
Matches: 493, Mismatches: 83, Indels: 69
0.76 0.13 0.11
Matches are distributed among these distances:
154 24 0.05
155 99 0.20
156 6 0.01
157 51 0.10
158 46 0.09
159 24 0.05
160 5 0.01
161 98 0.20
162 7 0.01
163 2 0.00
165 2 0.00
166 2 0.00
167 45 0.09
168 2 0.00
169 20 0.04
170 59 0.12
171 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (158 bp):
AGTCATTTTGGTAACCAGATGATAACCCTTTTTGTGGTTACTTATAAAGAAGATAGAGTTTTAAG
GTCAGTGGGTGATATAAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAAAAT
GAGCTTACTTTGGTTATTGTCAAATGTC
Found at i:98504526 original size:316 final size:320
Alignment explanation
Indices: 98503948--98504643 Score: 709
Period size: 316 Copynumber: 2.2 Consensus size: 320
98503938 AATGTGAGTG
* ** * * ** *
98503948 ATATGAACTAAATTTCATGTTGGACATGGCTAGAATGGATTTTATCTTGAAAATGAGTTTTGCTC
1 ATATGAAGTAAATTTCATGTTGGACATGATTAGAATGGATATCATCTTGAAAATGAGGCTTACTC
* * * * *
98504013 TGGTTATTGTCTAAAATGTCAGTCATTTTAGTAATAGGGTGATATTTGATTTTGTGGTCACTTAC
66 TGGTTATTGTC-AAAATGTCAGTCATTTGAGTAACAGGATGATACTGGATTTTGTGGTCACTTAC
* **
98504078 AAAGAAGTGAAAGTTTTAATGTCATTGGGTGATTATAAAGTAAAAATGTATAATTCATGTTGGAC
130 AAAGAAG-G-AAGTTTTAAGGTCAGCGGGTGATTATAAAGT--AAA--TAT-ATTCATGTTGGAC
* * * * * *
98504143 ATGTTTAGAATGGAATTTATCTTGAAAATGAGCTTAATTTGGTTATTGTTAAATGTCAGTCATTT
188 ATGTTTACAACGGAATTGATCTTGAAAACGAGCTTAATTTGGTTATCGTCAAATGTCAGTCATTT
* ** *
98504208 TGGTAACCGGATGATAACCCTTTTTGTAATTACTTATAAAGAAGAAACTAG-AGTTTTAAGGTCA
253 TGGTAACCGGACGATAACCAATTTTGTAATTACTTATAAAGAAG----TAGAAGTTTTAAGGTAA
*
98504272 GTGGGTA
314 ATGGGTA
* *
98504279 ATATGAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAAAATG-GGCTTACTT
1 ATATGAAGTAAATTTCATGTTGGACATGATTAGAATGGATATCATCTTGAAAATGAGGCTTACTC
*
98504343 TGGTTATTGTC-AAATGTCAGTCATTTGAGTAACCA-GATGATACCTGGA-TTTGTGGTTACTTA
66 TGGTTATTGTCAAAATGTCAGTCATTTGAGTAA-CAGGATGATA-CTGGATTTTGTGGTCACTTA
* *
98504405 TAAAGAA-G-AGTTTTAAGGTCAGCGGGTGA-TATTTAAGT-AA-AT-TTCATGTTGGACATGTT
129 CAAAGAAGGAAGTTTTAAGGTCAGCGGGTGATTA-TAAAGTAAATATATTCATGTTGGACATGTT
* * *
98504464 TACTACGG-ATATGATCTTGAAAACGAG-TCTACTTTGGTTATCGTCAAATGTCAGTTATTTTGG
193 TACAACGGAAT-TGATCTTGAAAACGAGCT-TAATTTGGTTATCGTCAAATGTCAGTCATTTTGG
* * * ** * *
98504527 TAACCTGACGATATCTAATTTTGTGGTTACTTATAAAGAAGTGGAAGTTTTAAGGTAAATGGGTG
256 TAACCGGACGATAACCAATTTTGTAATTACTTATAAAGAAGTAGAAGTTTTAAGGTAAATGGGTA
* * * * *
98504592 ATTTAAAGTAAATTTTATGTTGGCCAT-AGTTAGAATGGACATCATCTTGAAA
1 ATATGAAGTAAATTTCATGTTGGACATGA-TTAGAATGGATATCATCTTGAAA
98504644 CAAATTATAA
Statistics
Matches: 311, Mismatches: 47, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
312 3 0.01
313 61 0.20
315 3 0.01
316 99 0.32
318 2 0.01
321 2 0.01
323 2 0.01
324 23 0.07
326 1 0.00
328 45 0.14
329 4 0.01
330 16 0.05
331 50 0.16
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (320 bp):
ATATGAAGTAAATTTCATGTTGGACATGATTAGAATGGATATCATCTTGAAAATGAGGCTTACTC
TGGTTATTGTCAAAATGTCAGTCATTTGAGTAACAGGATGATACTGGATTTTGTGGTCACTTACA
AAGAAGGAAGTTTTAAGGTCAGCGGGTGATTATAAAGTAAATATATTCATGTTGGACATGTTTAC
AACGGAATTGATCTTGAAAACGAGCTTAATTTGGTTATCGTCAAATGTCAGTCATTTTGGTAACC
GGACGATAACCAATTTTGTAATTACTTATAAAGAAGTAGAAGTTTTAAGGTAAATGGGTA
Found at i:98513011 original size:23 final size:21
Alignment explanation
Indices: 98512981--98513038 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 21
98512971 TCAAGTGAAA
98512981 TATTGATATATGTTAAAGAGT
1 TATTGATATATGTTAAAGAGT
** *
98513002 TATTAAGATATAAATTAAAGATT
1 TATT--GATATATGTTAAAGAGT
98513025 TATTGATATATGTT
1 TATTGATATATGTT
98513039 CAATCTGGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 12 0.40
23 18 0.60
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (21 bp):
TATTGATATATGTTAAAGAGT
Found at i:98517538 original size:5 final size:6
Alignment explanation
Indices: 98517525--98517565 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
98517515 ATAATTTAAT
*
98517525 AAATAA AAATAA AAATTTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
98517566 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:98517553 original size:20 final size:21
Alignment explanation
Indices: 98517511--98517560 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
98517501 CATAAAAATT
98517511 ATAAATAATTTAATAAATAAAA
1 ATAAA-AATTTAATAAATAAAA
*
98517533 ATAAAAATTTAA-AACTAAAA
1 ATAAAAATTTAATAAATAAAA
98517553 ATAAAAAT
1 ATAAAAAT
98517561 AAAAAACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 15 0.56
21 7 0.26
22 5 0.19
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (21 bp):
ATAAAAATTTAATAAATAAAA
Found at i:98517566 original size:20 final size:20
Alignment explanation
Indices: 98517528--98517567 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
98517518 ATTTAATAAA
**
98517528 TAAAAATAAAAATTTAAAAC
1 TAAAAATAAAAATAAAAAAC
98517548 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
98517568 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:98517599 original size:9 final size:9
Alignment explanation
Indices: 98517585--98517643 Score: 84
Period size: 9 Copynumber: 6.6 Consensus size: 9
98517575 TTTATACAAA
98517585 TAATTCGGT
1 TAATTCGGT
98517594 TAATTCAGG-
1 TAATTC-GGT
*
98517603 TAATTCGGG
1 TAATTCGGT
98517612 TAATTCGGT
1 TAATTCGGT
*
98517621 TAATTTGGT
1 TAATTCGGT
98517630 TAATTCGGT
1 TAATTCGGT
98517639 TAATT
1 TAATT
98517644 TTATACTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
8 2 0.04
9 41 0.91
10 2 0.04
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:98518371 original size:18 final size:19
Alignment explanation
Indices: 98518326--98518369 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
98518316 AAGCCCCCCC
98518326 AAAAAAACCTAACCCCAAA
1 AAAAAAACCTAACCCCAAA
98518345 AAAAAAACCTAACCCCAAA
1 AAAAAAACCTAACCCCAAA
98518364 AAAAAA
1 AAAAAA
98518370 CCAAGAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.68, C:0.27, G:0.00, T:0.05
Consensus pattern (19 bp):
AAAAAAACCTAACCCCAAA
Found at i:98522687 original size:18 final size:19
Alignment explanation
Indices: 98522652--98522697 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
98522642 CAACTCTCTC
98522652 ATTTTTATTTCACTTATTT
1 ATTTTTATTTCACTTATTT
98522671 ATTTTTATTT-A-TCTATTT
1 ATTTTTATTTCACT-TATTT
*
98522689 ATTATTATT
1 ATTTTTATT
98522698 ATTTCTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 1 0.04
18 14 0.56
19 10 0.40
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTTATTTCACTTATTT
Found at i:98524522 original size:75 final size:75
Alignment explanation
Indices: 98524435--98524575 Score: 230
Period size: 75 Copynumber: 1.9 Consensus size: 75
98524425 GATTGGTGGT
* * *
98524435 GACTCCCATGTTCGTTTTCATTTTCAAAACCAAAGTTGATCTCCGTTTTCAAAAAAATAGTTTCG
1 GACTCCCATGTTCGTTTTCATTTTCAAAACCAAAGTAGATCCCCATTTTCAAAAAAATAGTTTCG
98524500 ATAGCTTGGC
66 ATAGCTTGGC
*
98524510 GACT-CCACTGTTCGTTTTCATTTTCAAAACCAAAGTAGATCCCCATTTTCAAAAAAATGGTTTC
1 GACTCCCA-TGTTCGTTTTCATTTTCAAAACCAAAGTAGATCCCCATTTTCAAAAAAATAGTTTC
98524574 GA
65 GA
98524576 CCACTGTTCG
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
74 3 0.05
75 58 0.95
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (75 bp):
GACTCCCATGTTCGTTTTCATTTTCAAAACCAAAGTAGATCCCCATTTTCAAAAAAATAGTTTCG
ATAGCTTGGC
Found at i:98524613 original size:62 final size:62
Alignment explanation
Indices: 98524514--98524638 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
98524504 CTTGGCGACT
98524514 CCACTGTTCGTTTTCATTTTCAAAACCAAAGTAGATCCCCATTTTCAAAAAAATGGTTTCGA
1 CCACTGTTCGTTTTCATTTTCAAAACCAAAGTAGATCCCCATTTTCAAAAAAATGGTTTCGA
* **
98524576 CCACTGTTCGTTTTCATTTTCAAAACCAAAGTTGATCCCTGTTTTCAAAAAAATGGTTTCGA
1 CCACTGTTCGTTTTCATTTTCAAAACCAAAGTAGATCCCCATTTTCAAAAAAATGGTTTCGA
98524638 C
1 C
98524639 AGCTTGGTGA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.35
Consensus pattern (62 bp):
CCACTGTTCGTTTTCATTTTCAAAACCAAAGTAGATCCCCATTTTCAAAAAAATGGTTTCGA
Found at i:98526205 original size:9 final size:9
Alignment explanation
Indices: 98526191--98526215 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
98526181 TTTCTTTTTG
98526191 CATGCATCT
1 CATGCATCT
98526200 CATGCATCT
1 CATGCATCT
98526209 CATGCAT
1 CATGCAT
98526216 TTGTATTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (9 bp):
CATGCATCT
Found at i:98527321 original size:20 final size:19
Alignment explanation
Indices: 98527278--98527346 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 19
98527268 TCTCTTAACA
98527278 AAAAATATAAAATAATTTTT
1 AAAAAT-TAAAATAATTTTT
98527298 -AAAATTAAAA-AATATTTAT
1 AAAAATTAAAATAAT-TTT-T
*
98527317 AAAAATTTCAAAATTTATATTTT
1 AAAAA-TT-AAAA-TAAT-TTTT
98527340 AAAAATT
1 AAAAATT
98527347 CTAAATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
17 3 0.07
18 8 0.20
19 6 0.15
20 4 0.10
21 2 0.05
22 6 0.15
23 6 0.15
24 6 0.15
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAAATTAAAATAATTTTT
Found at i:98527343 original size:22 final size:24
Alignment explanation
Indices: 98527309--98527354 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
98527299 AAATTAAAAA
*
98527309 ATATTTATAAAAATTTCAAAATTT
1 ATATTTATAAAAAATTCAAAATTT
*
98527333 ATATTT-T-AAAAATTCTAAATTT
1 ATATTTATAAAAAATTCAAAATTT
98527355 TTTAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 1 0.05
24 6 0.30
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
ATATTTATAAAAAATTCAAAATTT
Found at i:98527345 original size:43 final size:43
Alignment explanation
Indices: 98527277--98527379 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 43
98527267 CTCTCTTAAC
*
98527277 AAAAAATAT-AAAATA-AT-TTTT-AAAATTAAAAAATATTTA
1 AAAAAATTTCAAAATATATATTTTAAAAATTAAAAAATATTTA
* * ** * *
98527316 TAAAAATTTCAAAATTTATATTTTAAAAATTCTAAATTTTTTA
1 AAAAAATTTCAAAATATATATTTTAAAAATTAAAAAATATTTA
*
98527359 AAAAAATTTCTAAATATATAT
1 AAAAAATTTCAAAATATATAT
98527380 AAAGAAATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
39 7 0.14
40 5 0.10
41 2 0.04
42 4 0.08
43 32 0.64
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (43 bp):
AAAAAATTTCAAAATATATATTTTAAAAATTAAAAAATATTTA
Found at i:98527377 original size:41 final size:41
Alignment explanation
Indices: 98527308--98527411 Score: 99
Period size: 43 Copynumber: 2.6 Consensus size: 41
98527298 AAAATTAAAA
* * * *
98527308 AATA-TTTATAAAAATTTCAAAATTTATATTTTAA-AAATTCT
1 AATATTTTAAAAAAATTTCTAAA-TTATATATAAAGAAATT-T
*
98527349 AAATTTTTTAAAAAAATTTCTAAA-TATATATAAAGAAATTT
1 -AATATTTTAAAAAAATTTCTAAATTATATATAAAGAAATTT
*
98527390 AATATTTT-AAAAAATTTATAAA
1 AATATTTTAAAAAAATTTCTAAA
98527412 ATAATAATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
39 13 0.25
40 7 0.13
41 9 0.17
42 8 0.15
43 16 0.30
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (41 bp):
AATATTTTAAAAAAATTTCTAAATTATATATAAAGAAATTT
Found at i:98532957 original size:100 final size:100
Alignment explanation
Indices: 98532765--98533041 Score: 484
Period size: 100 Copynumber: 2.8 Consensus size: 100
98532755 CTATAAAATC
*
98532765 AAATTATATTAGATTAGATTACTACACATTTAAGACGTGGGAAAAAAAATTAGGTACCAACTATT
1 AAATTATATTAGATTACATTACTACACATTTAAGACGTGGG-AAAAAAATTAGGTACCAACTATT
98532830 ATTTCTTAATTAAAATTATTTTCAGGATTTTAATTA
65 ATTTCTTAATTAAAATTATTTTCAGGATTTTAATTA
* * *
98532866 AAATTATGTTAGATTACATTACTACATATTTAAGACGTGGGAAAAAAATTAGGTACCAACCATTA
1 AAATTATATTAGATTACATTACTACACATTTAAGACGTGGGAAAAAAATTAGGTACCAACTATTA
*
98532931 TTTCTTTATTAAAATTA-TTTCTAGGATTTTAATTA
66 TTTCTTAATTAAAATTATTTTC-AGGATTTTAATTA
98532966 AAATTATATTAGATTACATTACTACACATTTAAGACGTGGGAAAAAAATTAGGTACCAACTATTA
1 AAATTATATTAGATTACATTACTACACATTTAAGACGTGGGAAAAAAATTAGGTACCAACTATTA
98533031 TTTCTTAATTA
66 TTTCTTAATTA
98533042 TAAAAATTAG
Statistics
Matches: 166, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
99 4 0.02
100 124 0.75
101 38 0.23
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (100 bp):
AAATTATATTAGATTACATTACTACACATTTAAGACGTGGGAAAAAAATTAGGTACCAACTATTA
TTTCTTAATTAAAATTATTTTCAGGATTTTAATTA
Found at i:98533098 original size:15 final size:15
Alignment explanation
Indices: 98533073--98533109 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
98533063 ATTATATATT
*
98533073 TTTACTATTTTAATAA
1 TTTA-TATTTTAAAAA
98533089 TTTATATTTTAAAAA
1 TTTATATTTTAAAAA
98533104 TTTATA
1 TTTATA
98533110 AAGGATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTATATTTTAAAAA
Found at i:98537121 original size:28 final size:28
Alignment explanation
Indices: 98537081--98537139 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
98537071 CCCAATTCAA
*
98537081 TGGGCCCACCACCAAAGCGATGTTTGGT
1 TGGGCCCACCACCAAAACGATGTTTGGT
98537109 TGGGCCCACCACCAAAACGATGTTTGGT
1 TGGGCCCACCACCAAAACGATGTTTGGT
98537137 TGG
1 TGG
98537140 CTGTAATGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (28 bp):
TGGGCCCACCACCAAAACGATGTTTGGT
Found at i:98538649 original size:17 final size:17
Alignment explanation
Indices: 98538623--98538656 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
98538613 ATACTTTATA
*
98538623 TTTCAAGTTTTCCATAT
1 TTTCAAGTTTTACATAT
*
98538640 TTTCATGTTTTACATAT
1 TTTCAAGTTTTACATAT
98538657 ACGTGCAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTCAAGTTTTACATAT
Found at i:98539755 original size:17 final size:17
Alignment explanation
Indices: 98539729--98539769 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
98539719 TAACTCTCTA
* *
98539729 TTTAATTTAAAGATAATT
1 TTTAATTAAAACAT-ATT
98539747 TTTAATTAAAACATATT
1 TTTAATTAAAACATATT
98539764 TTTAAT
1 TTTAAT
98539770 GTTTTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAATTAAAACATATT
Found at i:98541777 original size:342 final size:342
Alignment explanation
Indices: 98541152--98541838 Score: 1338
Period size: 342 Copynumber: 2.0 Consensus size: 342
98541142 AAATGGTTTA
98541152 AGGTATTAGAGTGAATTCTATATATAACTCATACATAATTTAGTCCATTTAGATTTAAATATAGT
1 AGGTATTAGAGTGAATTCTATATATAACTCATACATAATTTAGTCCATTTAGATTTAAATATAGT
*
98541217 GTCCTAACTCGAGATTTTATACATGTGATATAGAATTGCTTAGGTGCTTTAGATAGAACCCACAT
66 ATCCTAACTCGAGATTTTATACATGTGATATAGAATTGCTTAGGTGCTTTAGATAGAACCCACAT
98541282 CAAGATTAGGGTTCTAACAGTTGATAAAACTAGATATCGAATGCGAAAAGGTGACATAGCAATAA
131 CAAGATTAGGGTTCTAACAGTTGATAAAACTAGATATCGAATGCGAAAAGGTGACATAGCAATAA
98541347 ATATGTTAGGTGTTTGTAAACCTGATATGCATTTTGTTTATGTTCTTCCCAGTTGGGAAGGTTCT
196 ATATGTTAGGTGTTTGTAAACCTGATATGCATTTTGTTTATGTTCTTCCCAGTTGGGAAGGTTCT
98541412 GTTGCTGATGGACGAGTTCTTCGAGATACCATTAGTAGGAGACATGGACTAAAAGTTCCTAATGG
261 GTTGCTGATGGACGAGTTCTTCGAGATACCATTAGTAGGAGACATGGACTAAAAGTTCCTAATGG
98541477 TAAAATGCAAAAATTAG
326 TAAAATGCAAAAATTAG
*
98541494 AGGTATTAGAGTGAATTCTATATATAACTCATACATAGTTTAGTCCATTTAGATTTAAATATAGT
1 AGGTATTAGAGTGAATTCTATATATAACTCATACATAATTTAGTCCATTTAGATTTAAATATAGT
98541559 ATCCTAACTCGAGATTTTATACATGTGATATAGAATTGCTTAGGTGCTTTAGATAGAACCCACAT
66 ATCCTAACTCGAGATTTTATACATGTGATATAGAATTGCTTAGGTGCTTTAGATAGAACCCACAT
* *
98541624 CAAGATTAGGGTTCTAATAGTTGATAAAACTAGATATCGAATGCGAAAATGTGACATAGCAATAA
131 CAAGATTAGGGTTCTAACAGTTGATAAAACTAGATATCGAATGCGAAAAGGTGACATAGCAATAA
98541689 ATATGTTAGGTGTTTGTAAACCTGATATGCATTTTGTTTATGTTCTTCCCAGTTGGGAAGGTTCT
196 ATATGTTAGGTGTTTGTAAACCTGATATGCATTTTGTTTATGTTCTTCCCAGTTGGGAAGGTTCT
98541754 GTTGCTGATGGACGAGTTCTTCGAGATACCATTAGTAGGAGACATGGACTAAAAGTTCCTAATGG
261 GTTGCTGATGGACGAGTTCTTCGAGATACCATTAGTAGGAGACATGGACTAAAAGTTCCTAATGG
98541819 TAAAATGCAAAAATTAG
326 TAAAATGCAAAAATTAG
98541836 AGG
1 AGG
98541839 GATTTGAATT
Statistics
Matches: 341, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
342 341 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (342 bp):
AGGTATTAGAGTGAATTCTATATATAACTCATACATAATTTAGTCCATTTAGATTTAAATATAGT
ATCCTAACTCGAGATTTTATACATGTGATATAGAATTGCTTAGGTGCTTTAGATAGAACCCACAT
CAAGATTAGGGTTCTAACAGTTGATAAAACTAGATATCGAATGCGAAAAGGTGACATAGCAATAA
ATATGTTAGGTGTTTGTAAACCTGATATGCATTTTGTTTATGTTCTTCCCAGTTGGGAAGGTTCT
GTTGCTGATGGACGAGTTCTTCGAGATACCATTAGTAGGAGACATGGACTAAAAGTTCCTAATGG
TAAAATGCAAAAATTAG
Found at i:98544175 original size:16 final size:16
Alignment explanation
Indices: 98544150--98544209 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
98544140 ACAGTTGAAT
98544150 TACT-TATTACAGCTC
1 TACTCTATTACAGCTC
*
98544165 TACTCTATTACAACTC
1 TACTCTATTACAGCTC
* * *
98544181 TATTCAATTACAGCCC
1 TACTCTATTACAGCTC
* *
98544197 TATTCCATTACAG
1 TACTCTATTACAG
98544210 TGAACCAAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
15 4 0.11
16 34 0.89
ACGTcount: A:0.30, C:0.28, G:0.05, T:0.37
Consensus pattern (16 bp):
TACTCTATTACAGCTC
Found at i:98544612 original size:19 final size:19
Alignment explanation
Indices: 98544572--98544621 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
98544562 ACATGTTAGC
*
98544572 ATTTAATTAATTTGTTTAA
1 ATTTAAATAATTTGTTTAA
*
98544591 ATTTAAATATATTTTTTTAA
1 ATTTAAATA-ATTTGTTTAA
* *
98544611 TTTTTAATAAT
1 ATTTAAATAAT
98544622 GTTAATGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTAAATAATTTGTTTAA
Found at i:98545385 original size:41 final size:41
Alignment explanation
Indices: 98545322--98545406 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
98545312 CTTGGTTCCC
*
98545322 TTTGGGATTATTAAAGCTAGTTTAATAAAATAAGTAGACCT
1 TTTGGGATTATTAAAGCTAGTTTAAAAAAATAAGTAGACCT
*
98545363 TTTGGGATTATTAGAG-TAAGTTTAAAAAAATAAGTAGACCT
1 TTTGGGATTATTAAAGCT-AGTTTAAAAAAATAAGTAGACCT
98545404 TTT
1 TTT
98545407 TGTTATTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
40 1 0.02
41 40 0.98
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.38
Consensus pattern (41 bp):
TTTGGGATTATTAAAGCTAGTTTAAAAAAATAAGTAGACCT
Found at i:98547557 original size:17 final size:18
Alignment explanation
Indices: 98547528--98547562 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
98547518 TAATTTTAAG
98547528 GAATGGAAAAAGGCACTT
1 GAATGGAAAAAGGCACTT
98547546 GAATGG-AAAAGGCACTT
1 GAATGGAAAAAGGCACTT
98547563 ACTTATAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.43, C:0.11, G:0.29, T:0.17
Consensus pattern (18 bp):
GAATGGAAAAAGGCACTT
Found at i:98560873 original size:19 final size:19
Alignment explanation
Indices: 98560849--98560886 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
98560839 GAAATGAATA
*
98560849 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
98560868 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
98560887 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:98566320 original size:15 final size:15
Alignment explanation
Indices: 98566275--98566321 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
98566265 TAATAAATTA
* *
98566275 AAAAATTAAGTGTTA
1 AAAAATTAAATGTTG
* *
98566290 AAAAAATAAATATTG
1 AAAAATTAAATGTTG
98566305 AAAAATTAAATGTTG
1 AAAAATTAAATGTTG
98566320 AA
1 AA
98566322 TTTAAGTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.30
Consensus pattern (15 bp):
AAAAATTAAATGTTG
Found at i:98573048 original size:14 final size:14
Alignment explanation
Indices: 98573029--98573058 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
98573019 GGCTAGACCA
98573029 CTTAATTCGTTTTT
1 CTTAATTCGTTTTT
98573043 CTTAATTCGTTTTT
1 CTTAATTCGTTTTT
98573057 CT
1 CT
98573059 GAGTATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63
Consensus pattern (14 bp):
CTTAATTCGTTTTT
Found at i:98576937 original size:16 final size:16
Alignment explanation
Indices: 98576913--98576947 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
98576903 CATTAAACAC
*
98576913 AACATCTACATTCGTT
1 AACACCTACATTCGTT
98576929 AACACCTACATTCGTT
1 AACACCTACATTCGTT
98576945 AAC
1 AAC
98576948 GAAAATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.29, G:0.06, T:0.31
Consensus pattern (16 bp):
AACACCTACATTCGTT
Found at i:98580403 original size:16 final size:16
Alignment explanation
Indices: 98580359--98580410 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
98580349 TCTTTTTTTA
98580359 ATTTAATGTATTATTT
1 ATTTAATGTATTATTT
* *
98580375 ATTTATTTTATTATTT
1 ATTTAATGTATTATTT
98580391 -TTTAATGTAATTATATT
1 ATTTAATGT-ATTAT-TT
98580408 ATT
1 ATT
98580411 AGATTATCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 6 0.21
16 19 0.66
17 2 0.07
18 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (16 bp):
ATTTAATGTATTATTT
Found at i:98581087 original size:90 final size:90
Alignment explanation
Indices: 98580929--98581112 Score: 217
Period size: 90 Copynumber: 2.0 Consensus size: 90
98580919 CATTGCTTTT
* * * * *
98580929 TTTTTTGCACTTATTTAGATATTTAAACTTTCAAAATGTATCAAAAAGAACCTCAAACATT-AAA
1 TTTTTTGCACTCAATTAGATACTTAAACTTTCAAAATGCATAAAAAAGAACCTCAAACATTAAAA
* *
98580993 AAAAAAGAAGCAATTAAGCCCCTAC
66 AAAAAAAAAGAAATTAAGCCCCTAC
* * *** ***
98581018 ATTTTTTGCACTCAATTAGATACTTAAGCTTTCAAAATGCATAAAAAAGACCCTCAATTTTTTTC
1 -TTTTTTGCACTCAATTAGATACTTAAACTTTCAAAATGCATAAAAAAGAACCTCAAACATTAAA
98581083 AAAAAAAAAAGAAATTAAGCCCCTAC
65 AAAAAAAAAAGAAATTAAGCCCCTAC
98581109 TTTT
1 TTTT
98581113 ATTAAAAATT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 55 0.70
91 24 0.30
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (90 bp):
TTTTTTGCACTCAATTAGATACTTAAACTTTCAAAATGCATAAAAAAGAACCTCAAACATTAAAA
AAAAAAAAAGAAATTAAGCCCCTAC
Found at i:98581223 original size:10 final size:10
Alignment explanation
Indices: 98581180--98581296 Score: 72
Period size: 10 Copynumber: 12.3 Consensus size: 10
98581170 AATAAAAAAT
98581180 AAAATAT-TA
1 AAAATATATA
*
98581189 AAAATTTATTA
1 AAAATATA-TA
* *
98581200 GAAAT-TAGA
1 AAAATATATA
98581209 AAAATATATA
1 AAAATATATA
98581219 AAAATCAT-TA
1 AAAAT-ATATA
98581229 AAAA-ATATA
1 AAAATATATA
*
98581238 AAAAT-TGTA
1 AAAATATATA
* *
98581247 AAATTTTATA
1 AAAATATATA
*
98581257 AAAATCGTA-A
1 AAAAT-ATATA
98581267 AAAAT-TAT-
1 AAAATATATA
98581275 AAAATATATA
1 AAAATATATA
*
98581285 GAAATATA-A
1 AAAATATATA
98581294 AAA
1 AAA
98581297 TTTTAAAATT
Statistics
Matches: 85, Mismatches: 12, Indels: 22
0.71 0.10 0.18
Matches are distributed among these distances:
8 9 0.11
9 30 0.35
10 36 0.42
11 10 0.12
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (10 bp):
AAAATATATA
Found at i:98581243 original size:38 final size:38
Alignment explanation
Indices: 98581187--98581288 Score: 100
Period size: 38 Copynumber: 2.6 Consensus size: 38
98581177 AATAAAATAT
* * *
98581187 TAAAAATTTATTAGAAATTAGAAAAATATATAAAAATCAT
1 TAAAAAATTA-TAAAAATTAGAAAAATATATAAAAATC-G
* *
98581227 TAAAAAA-TATAAAAATT-GTAAAATTTTATAAAAATCG
1 TAAAAAATTATAAAAATTAG-AAAAATATATAAAAATCG
98581264 TAAAAAATTATAAAATATATAGAAA
1 TAAAAAATTATAAAA-AT-TAGAAA
98581289 TATAAAAATT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
37 8 0.15
38 29 0.56
39 4 0.08
40 10 0.19
41 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (38 bp):
TAAAAAATTATAAAAATTAGAAAAATATATAAAAATCG
Found at i:98581349 original size:19 final size:19
Alignment explanation
Indices: 98581208--98581375 Score: 94
Period size: 19 Copynumber: 8.8 Consensus size: 19
98581198 TAGAAATTAG
* *
98581208 AAAAATATATAAAAATCAT
1 AAAAAAATATAAAAATCGT
* *
98581227 TAAAAAATATAAAAATTGT
1 AAAAAAATATAAAAATCGT
***
98581246 AAAATTTTATAAAAATCGT
1 AAAAAAATATAAAAATCGT
* *
98581265 AAAAAATTAT-AAAAT-AT
1 AAAAAAATATAAAAATCGT
* *
98581282 ATAGAAATATAAAAAT--T
1 AAAAAAATATAAAAATCGT
** * *
98581299 TTAAAATTTTAAAAAGTCGT
1 AAAAAAATATAAAAA-TCGT
*
98581319 AAGAAAATTATATAAAAT-GT
1 AA-AAAAATATA-AAAATCGT
**
98581339 AAAAAAATATAAATTTCGT
1 AAAAAAATATAAAAATCGT
98581358 AAAAAAATTTATAAAAAT
1 AAAAAAA--TATAAAAAT
98581376 TATCGTAACA
Statistics
Matches: 113, Mismatches: 27, Indels: 16
0.72 0.17 0.10
Matches are distributed among these distances:
17 20 0.18
18 14 0.12
19 54 0.48
20 5 0.04
21 16 0.14
22 4 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
AAAAAAATATAAAAATCGT
Found at i:98581353 original size:55 final size:55
Alignment explanation
Indices: 98581173--98581354 Score: 169
Period size: 55 Copynumber: 3.3 Consensus size: 55
98581163 ATATTTTAAT
* * *
98581173 AAAAAAT-AAAATATTAAAAATTTATTAGAAAT--TAGAAAAATATATAAAA-ATCATTA
1 AAAAAATAAAAATTTTAAAATTTTA-TAAAAATCGTA-AAAAAT-TATAAAATAT-A-TA
*
98581229 AAAAATATAAAAATTGTAAAATTTTATAAAAATCGTAAAAAATTATAAAATATATA
1 AAAAA-ATAAAAATTTTAAAATTTTATAAAAATCGTAAAAAATTATAAAATATATA
* * * *
98581285 GAAATATAAAAATTTTAAAATTTTA-AAAAGTCGTAAGAAAATTATATAAA-ATGTA
1 AAAAAATAAAAATTTTAAAATTTTATAAAAATCGTAA-AAAATTATA-AAATATATA
*
98581340 AAAAAATATAAATTT
1 AAAAAATAAAAATTT
98581355 CGTAAAAAAA
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
54 10 0.09
55 44 0.41
56 13 0.12
57 16 0.15
58 22 0.21
59 2 0.02
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (55 bp):
AAAAAATAAAAATTTTAAAATTTTATAAAAATCGTAAAAAATTATAAAATATATA
Found at i:98581560 original size:18 final size:19
Alignment explanation
Indices: 98581528--98581571 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 19
98581518 ATTTTTTTAC
98581528 AATTTTTATAAAAAATTCT
1 AATTTTTATAAAAAATTCT
*
98581547 AATTTTTA-ATAAAATTCT
1 AATTTTTATAAAAAATTCT
98581565 AATTTTT
1 AATTTTT
98581572 TATATTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (19 bp):
AATTTTTATAAAAAATTCT
Found at i:98581578 original size:27 final size:27
Alignment explanation
Indices: 98581548--98581611 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
98581538 AAAAATTCTA
98581548 ATTTTTAATAAAATTCTA-ATTTTT-TAT
1 ATTTTTAATAAAATT-TATATTTTTAT-T
*
98581575 ATTTTT-CTAAAATTTATATTTTTATT
1 ATTTTTAATAAAATTTATATTTTTATT
98581601 ATTTTTAATAA
1 ATTTTTAATAA
98581612 GAGCAGGGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 2 0.06
26 20 0.62
27 10 0.31
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (27 bp):
ATTTTTAATAAAATTTATATTTTTATT
Found at i:98583432 original size:26 final size:26
Alignment explanation
Indices: 98583403--98583458 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
98583393 TTTAATTTTG
*
98583403 TTTATATTATA-TATATCGTATTATTA
1 TTTATATTAAATTATAT-GTATTATTA
* *
98583429 TTTATTTTAAATTATATGTTTTATTA
1 TTTATATTAAATTATATGTATTATTA
98583455 TTTA
1 TTTA
98583459 ATAGATGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (26 bp):
TTTATATTAAATTATATGTATTATTA
Found at i:98584643 original size:16 final size:15
Alignment explanation
Indices: 98584617--98584654 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
98584607 ATCATAATTC
98584617 TATTTTTTTATTTTA
1 TATTTTTTTATTTTA
98584632 TATTTGTTTTATTTTA
1 TATTT-TTTTATTTTA
98584648 T-TTTTTT
1 TATTTTTT
98584655 ATCAACTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.14
15 8 0.36
16 11 0.50
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (15 bp):
TATTTTTTTATTTTA
Found at i:98586349 original size:15 final size:15
Alignment explanation
Indices: 98586318--98586356 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
98586308 GAATATTTTT
*
98586318 TATAATT-TAAAATA
1 TATAATTATAAAAGA
*
98586332 TATATTTATAAAAGA
1 TATAATTATAAAAGA
98586347 TATAATTATA
1 TATAATTATA
98586357 TTTCATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TATAATTATAAAAGA
Found at i:98592636 original size:15 final size:15
Alignment explanation
Indices: 98592605--98592648 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
98592595 ATGAATTGAA
*
98592605 AAAAATAAGTGTT-G
1 AAAAATAAGTATTAG
98592619 AAAAATAAGTATTAG
1 AAAAATAAGTATTAG
*
98592634 AAAATTAAGTATTAG
1 AAAAATAAGTATTAG
98592649 TTATTTTGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.30
Consensus pattern (15 bp):
AAAAATAAGTATTAG
Found at i:98596925 original size:33 final size:33
Alignment explanation
Indices: 98596882--98596989 Score: 97
Period size: 33 Copynumber: 3.4 Consensus size: 33
98596872 GTTTTTTATA
*
98596882 ATTATTTTAAAATTAATTTGTTAGTAATTTAGG
1 ATTATGTTAAAATTAATTTGTTAGTAATTTAGG
98596915 ATTATGTTAAAATT--TGTTG-T-GT--TTGTA--
1 ATTATGTTAAAATTAAT-TTGTTAGTAATT-TAGG
* *
98596942 ATTATTTTAAAATTAATTTATTAGTAATTTAGG
1 ATTATGTTAAAATTAATTTGTTAGTAATTTAGG
*
98596975 ATTAAGTTATAAATT
1 ATTATGTTA-AAATT
98596990 GTTATGTTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 21
0.69 0.06 0.25
Matches are distributed among these distances:
27 13 0.22
28 4 0.07
29 4 0.07
30 4 0.07
31 4 0.07
32 5 0.08
33 20 0.34
34 5 0.08
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (33 bp):
ATTATGTTAAAATTAATTTGTTAGTAATTTAGG
Found at i:98596960 original size:60 final size:60
Alignment explanation
Indices: 98596880--98596998 Score: 195
Period size: 60 Copynumber: 2.0 Consensus size: 60
98596870 TTGTTTTTTA
* * *
98596880 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTA-AAATTTGTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA-TTGTTATGTTTG
98596940 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTATGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTATGTTT
98596999 AGTTTAGTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
60 52 0.95
61 3 0.05
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTATGTTTG
Found at i:98597424 original size:20 final size:20
Alignment explanation
Indices: 98597391--98597438 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
98597381 TGATCCGAAA
*
98597391 ATAAAAAATAATATCTT-AT
1 ATAAAAAATAATATATTAAT
*
98597410 TTAAAAAATATATATATTAAT
1 ATAAAAAATA-ATATATTAAT
98597431 ATAAAAAA
1 ATAAAAAA
98597439 AGAGTCGTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 9 0.38
20 6 0.25
21 9 0.38
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAAAAAATAATATATTAAT
Found at i:98609573 original size:18 final size:18
Alignment explanation
Indices: 98609546--98609586 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
98609536 AAAGTTTAAC
98609546 ATAT-TAATCT-ATATAT
1 ATATATAATCTCATATAT
98609562 AATATATAATCTCATATAT
1 -ATATATAATCTCATATAT
98609581 ATATAT
1 ATATAT
98609587 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 6 0.27
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATATAATCTCATATAT
Found at i:98617537 original size:89 final size:89
Alignment explanation
Indices: 98617386--98617562 Score: 327
Period size: 89 Copynumber: 2.0 Consensus size: 89
98617376 GCTTGATGGT
* *
98617386 TCACTTCTGTTTGTTTATTGCTTCAATGATACAGAAACTTACAAGTTTCAATGTACAATTTCCAT
1 TCACTTCTGTTTGTTCATTGCTTCAATGATACAGAAACTTACAAGTTTCAATGAACAATTTCCAT
98617451 ATTTTTCACTTGTGTCCTAACATG
66 ATTTTTCACTTGTGTCCTAACATG
*
98617475 TCACTTCTGTTTGTTCATTGCTTCAATGATACAGCAACTTACAAGTTTCAATGAACAATTTCCAT
1 TCACTTCTGTTTGTTCATTGCTTCAATGATACAGAAACTTACAAGTTTCAATGAACAATTTCCAT
98617540 ATTTTTCACTTGTGTCCTAACAT
66 ATTTTTCACTTGTGTCCTAACAT
98617563 ATAACTCTTG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (89 bp):
TCACTTCTGTTTGTTCATTGCTTCAATGATACAGAAACTTACAAGTTTCAATGAACAATTTCCAT
ATTTTTCACTTGTGTCCTAACATG
Found at i:98620636 original size:7 final size:7
Alignment explanation
Indices: 98620626--98620655 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
98620616 AGTTAAAATG
98620626 TTGAATA
1 TTGAATA
98620633 TTGAATA
1 TTGAATA
98620640 TTGAATA
1 TTGAATA
*
98620647 TTAAATA
1 TTGAATA
98620654 TT
1 TT
98620656 AAATTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (7 bp):
TTGAATA
Found at i:98620645 original size:14 final size:14
Alignment explanation
Indices: 98620621--98620655 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
98620611 TAAAAAGTTA
*
98620621 AAATGTTGAATATT
1 AAATATTGAATATT
*
98620635 GAATATTGAATATT
1 AAATATTGAATATT
98620649 AAATATT
1 AAATATT
98620656 AAATTATAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (14 bp):
AAATATTGAATATT
Found at i:98621209 original size:18 final size:17
Alignment explanation
Indices: 98621169--98621211 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
98621159 AATAAAAATT
98621169 ATTAAATTTTAATAAAA
1 ATTAAATTTTAATAAAA
*
98621186 A-T-AATTTTATTAAAA
1 ATTAAATTTTAATAAAA
98621201 ATTAGAATTTT
1 ATTA-AATTTT
98621212 TTTTATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 13 0.59
16 2 0.09
17 1 0.05
18 6 0.27
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
ATTAAATTTTAATAAAA
Found at i:98621240 original size:9 final size:9
Alignment explanation
Indices: 98621214--98621339 Score: 62
Period size: 9 Copynumber: 13.4 Consensus size: 9
98621204 AGAATTTTTT
98621214 TTATAAAAA
1 TTATAAAAA
98621223 TCGTA-AAAAA
1 T--TATAAAAA
98621233 TTAT-AAAA
1 TTATAAAAA
98621241 TATATAGAAATA
1 T-TATA-AAA-A
* *
98621253 TAAAAAAAA
1 TTATAAAAA
* *
98621262 CTATAAAATG
1 TTATAAAA-A
*
98621272 TTAT-AAAG
1 TTATAAAAA
*
98621280 TTGTAAGAAAA
1 TTATAA--AAA
98621291 TTATAAAAA
1 TTATAAAAA
* *
98621300 ATGTAAAAA
1 TTATAAAAA
98621309 TTAT-AAAA
1 TTATAAAAA
*
98621317 TTCGTAAAAA
1 TT-ATAAAAA
98621327 TTATAAAAA
1 TTATAAAAA
98621336 TTAT
1 TTAT
98621340 CGCACCAAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
8 17 0.19
9 37 0.42
10 18 0.20
11 14 0.16
12 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (9 bp):
TTATAAAAA
Found at i:98621310 original size:18 final size:19
Alignment explanation
Indices: 98621287--98621335 Score: 75
Period size: 18 Copynumber: 2.7 Consensus size: 19
98621277 AAGTTGTAAG
98621287 AAAATTATAAAAAAT-GTA
1 AAAATTATAAAAAATCGTA
*
98621305 AAAATTAT-AAAATTCGTA
1 AAAATTATAAAAAATCGTA
98621323 AAAATTATAAAAA
1 AAAATTATAAAAA
98621336 TTATCGCACC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 5 0.18
18 19 0.68
19 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (19 bp):
AAAATTATAAAAAATCGTA
Found at i:98621326 original size:10 final size:9
Alignment explanation
Indices: 98621287--98621339 Score: 63
Period size: 9 Copynumber: 5.9 Consensus size: 9
98621277 AAGTTGTAAG
98621287 AAAATTATA
1 AAAATTATA
* *
98621296 AAAAATGTA
1 AAAATTATA
98621305 AAAATTAT-
1 AAAATTATA
*
98621313 AAAATTCGTA
1 AAAATT-ATA
98621323 AAAATTATA
1 AAAATTATA
98621332 AAAATTAT
1 AAAATTAT
98621340 CGCACCAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
8 6 0.17
9 24 0.67
10 6 0.17
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:98624436 original size:16 final size:16
Alignment explanation
Indices: 98624415--98624485 Score: 115
Period size: 16 Copynumber: 4.4 Consensus size: 16
98624405 TGAATTACTG
98624415 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
98624431 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* *
98624447 ATTACAGTTTTATTCA
1 ATTACAGCTCTATTCA
*
98624463 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCA
98624479 ATTACAG
1 ATTACAG
98624486 TGAACCAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:98627480 original size:25 final size:25
Alignment explanation
Indices: 98627452--98627506 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
98627442 TTACAAAGGG
**
98627452 AAAGTCCTAATCTAATTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
*
98627477 AAAGTCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
98627502 AAAGT
1 AAAGT
98627507 TTATAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCCTAATTT
Found at i:98632101 original size:25 final size:25
Alignment explanation
Indices: 98632067--98632119 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
98632057 TTATAAAGGG
** *
98632067 AAAGTCCTAATCTATTTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
98632092 AAAGTCCTAATAGAATTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
98632117 AAA
1 AAA
98632120 TTTATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.38
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCCTAATTT
Found at i:98636930 original size:15 final size:17
Alignment explanation
Indices: 98636899--98636932 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
98636889 TACAATTTTA
98636899 ATTAAGTATACAAAAAT
1 ATTAAGTATACAAAAAT
98636916 ATTAA-TATA-AAAAAT
1 ATTAAGTATACAAAAAT
98636931 AT
1 AT
98636933 ATATTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 4 0.24
17 5 0.29
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
ATTAAGTATACAAAAAT
Found at i:98644052 original size:14 final size:13
Alignment explanation
Indices: 98644033--98644095 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 13
98644023 AATACTAATG
98644033 ATAATAATAAAGAA
1 ATAATAATAAA-AA
*
98644047 ATAATATATCAAAA
1 ATAATA-ATAAAAA
*
98644061 ATAACAATAAAACA
1 ATAATAATAAAA-A
* *
98644075 ATATTAATAACGAA
1 ATAATAATAA-AAA
98644089 ATAATAA
1 ATAATAA
98644096 AACTAACACT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
13 5 0.13
14 29 0.74
15 5 0.13
ACGTcount: A:0.67, C:0.06, G:0.03, T:0.24
Consensus pattern (13 bp):
ATAATAATAAAAA
Found at i:98644800 original size:60 final size:61
Alignment explanation
Indices: 98644692--98644814 Score: 212
Period size: 60 Copynumber: 2.0 Consensus size: 61
98644682 GGCAGTGTGG
98644692 CTCTGTTTTAGCTCGTGTGTGTTAAAAATTCAAGCCCAGTCTTCACACGGCCTCGGACACGC
1 CTCTGTTTTAGCTCGTGTGTGTTAAAAA-TCAAGCCCAGTCTTCACACGGCCTCGGACACGC
* *
98644754 CTCTGTTTTAGCTTGTGTGTGTTAAAAA-CAAGCCCAGTCTTCACACGGCCTTGGACACGC
1 CTCTGTTTTAGCTCGTGTGTGTTAAAAATCAAGCCCAGTCTTCACACGGCCTCGGACACGC
98644814 C
1 C
98644815 CGTGTGTCCA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
60 32 0.54
62 27 0.46
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (61 bp):
CTCTGTTTTAGCTCGTGTGTGTTAAAAATCAAGCCCAGTCTTCACACGGCCTCGGACACGC
Found at i:98648192 original size:16 final size:18
Alignment explanation
Indices: 98648157--98648203 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
98648147 TTTAAAATAA
98648157 AAAAAAT-AAAATGCAAT
1 AAAAAATAAAAATGCAAT
*
98648174 -AAAAATAAAAATG-ACT
1 AAAAAATAAAAATGCAAT
98648190 AAAATAATAAAAAT
1 AAAA-AATAAAAAT
98648204 TAAGTGTTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 8 0.31
17 9 0.35
18 9 0.35
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (18 bp):
AAAAAATAAAAATGCAAT
Found at i:98653328 original size:3 final size:3
Alignment explanation
Indices: 98653317--98653547 Score: 58
Period size: 3 Copynumber: 74.7 Consensus size: 3
98653307 AAAAAAGAAG
* * * * * * *
98653317 TAA TGA TAA TAA TAA TAG GAG TAA CAA TAA TAA T-A TAA TGA TGA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * * *
98653365 CAA TAA TAA -AA GGAA CAA AAA TAA TAG TAA TAA TAA -AGA TATT TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA
* ** * *
98653411 TAA TAG TAA TAA TAA CGA TGA T-A TAAA TAA TAA TATA TACA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A TAA TAA
* * * * * * *
98653458 TAA TAG TTA TAAA TAA AAA TAA TGGAA GTAG TAA TAA CAA TAG TAA TAG
1 TAA TAA TAA T-AA TAA TAA TAA T--AA -TAA TAA TAA TAA TAA TAA TAA
* * * *
98653507 TAA TAA -AGA TAA CAG CAA GAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
98653548 TATTTAATTC
Statistics
Matches: 166, Mismatches: 47, Indels: 30
0.68 0.19 0.12
Matches are distributed among these distances:
2 8 0.05
3 137 0.83
4 18 0.11
5 2 0.01
6 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:98653473 original size:19 final size:20
Alignment explanation
Indices: 98653435--98653480 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
98653425 ACGATGATAT
*
98653435 AAATAATAATATATACATAA
1 AAATAATAATATATAAATAA
*
98653455 AAATAATAGT-TATAAATAA
1 AAATAATAATATATAAATAA
98653474 AAATAAT
1 AAATAAT
98653481 GGAAGTAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATAATAATATATAAATAA
Found at i:98655333 original size:27 final size:27
Alignment explanation
Indices: 98655302--98655359 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
98655292 TTTATTTCTC
98655302 AAAATAATTAGTCCTTTACTTTTCACT
1 AAAATAATTAGTCCTTTACTTTTCACT
*
98655329 AAAATGATTAGTCCTTTACTTTTCACT
1 AAAATAATTAGTCCTTTACTTTTCACT
98655356 AAAA
1 AAAA
98655360 GATTTACATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.05, T:0.41
Consensus pattern (27 bp):
AAAATAATTAGTCCTTTACTTTTCACT
Found at i:98664480 original size:21 final size:21
Alignment explanation
Indices: 98664455--98664495 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
98664445 ATACAATAAT
*
98664455 AAAA-TTATATTTTAACTCTTA
1 AAAATTTATAATTTAA-TCTTA
98664476 AAAATTTATAATTTAATCTT
1 AAAATTTATAATTTAATCTT
98664496 CATACCTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (21 bp):
AAAATTTATAATTTAATCTTA
Found at i:98668706 original size:22 final size:22
Alignment explanation
Indices: 98668675--98668718 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
98668665 TTATTAACAC
*
98668675 TTTTTATATTTTTAAACTTATA
1 TTTTTATATTTTAAAACTTATA
* *
98668697 TTTTTTTATTTTAAAATTTATA
1 TTTTTATATTTTAAAACTTATA
98668719 AATTAGGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTTATATTTTAAAACTTATA
Found at i:98672157 original size:132 final size:133
Alignment explanation
Indices: 98671920--98672187 Score: 520
Period size: 132 Copynumber: 2.0 Consensus size: 133
98671910 GATGCAGATA
98671920 ACAGAATCAGATAAACATAGCAAATATCCAAAATCCTACCCCCATCCTCTACACACCATCTCCGA
1 ACAGAATCAGATAAACATAGCAAATATCCAAAATCCTACCCCCATCCTCTACACACCATCTCCGA
98671985 CCATCCCATCTCACCATGTGGGGTTAAAAACACCCACCCATCCC-ACACACCATATAGTGTCGAT
66 CCATCCCATCTCACCATGTGGGGTTAAAAACACCCACCCATCCCTACACACCATATAGTGTCGAT
98672049 GCG
131 GCG
*
98672052 ACAGAATCAGATAAACATAGCAAATATCCAAATTCCTACCCCCATCCTCTACACACCATCTCCGA
1 ACAGAATCAGATAAACATAGCAAATATCCAAAATCCTACCCCCATCCTCTACACACCATCTCCGA
98672117 CCATCCCATCTCACCATGTGGGGTTAAAAACACCCACCCATCCCTACACACCATATAGTGTCGAT
66 CCATCCCATCTCACCATGTGGGGTTAAAAACACCCACCCATCCCTACACACCATATAGTGTCGAT
98672182 GCG
131 GCG
98672185 ACA
1 ACA
98672188 CATGACAAAA
Statistics
Matches: 134, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
132 108 0.81
133 26 0.19
ACGTcount: A:0.34, C:0.36, G:0.10, T:0.19
Consensus pattern (133 bp):
ACAGAATCAGATAAACATAGCAAATATCCAAAATCCTACCCCCATCCTCTACACACCATCTCCGA
CCATCCCATCTCACCATGTGGGGTTAAAAACACCCACCCATCCCTACACACCATATAGTGTCGAT
GCG
Found at i:98674030 original size:8 final size:8
Alignment explanation
Indices: 98674017--98674047 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
98674007 AATTAATAAT
98674017 AACAACAA
1 AACAACAA
98674025 AACAACAA
1 AACAACAA
98674033 AACAACAA
1 AACAACAA
98674041 AACAACA
1 AACAACA
98674048 GGAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.74, C:0.26, G:0.00, T:0.00
Consensus pattern (8 bp):
AACAACAA
Found at i:98675246 original size:29 final size:30
Alignment explanation
Indices: 98675213--98675298 Score: 95
Period size: 31 Copynumber: 2.9 Consensus size: 30
98675203 ATTTAATATA
98675213 CAATTATATACAT-AAACTTTAATTTGGTAT
1 CAATTATATACATGAAACTTTAATTTGGT-T
* *
98675243 -AATTATACACATGAAACTCTAATTATGGTT
1 CAATTATATACATGAAACTTTAATT-TGGTT
* * *
98675273 CAAATGTATACTTGAAACTTTAATTT
1 CAATTATATACATGAAACTTTAATTT
98675299 TGATTTAATC
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
29 11 0.24
30 12 0.26
31 23 0.50
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.41
Consensus pattern (30 bp):
CAATTATATACATGAAACTTTAATTTGGTT
Found at i:98675266 original size:30 final size:30
Alignment explanation
Indices: 98675214--98675271 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
98675204 TTTAATATAC
* *
98675214 AATTATATACATAAACTTTAATT-TGGTAT
1 AATTATACACATAAACTCTAATTATGGTAT
98675243 AATTATACACATGAAACTCTAATTATGGT
1 AATTATACACAT-AAACTCTAATTATGGT
98675272 TCAAATGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 11 0.44
30 10 0.40
31 4 0.16
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (30 bp):
AATTATACACATAAACTCTAATTATGGTAT
Found at i:98682178 original size:35 final size:36
Alignment explanation
Indices: 98682113--98682183 Score: 94
Period size: 35 Copynumber: 2.0 Consensus size: 36
98682103 ATATTTCATG
98682113 TATTATTAATTAATTTTAAATCATACATTTATTATT
1 TATTATTAATTAATTTTAAATCATACATTTATTATT
*
98682149 TATT-TTATATTATTTTTAAA-CAT-CAATTTATTATT
1 TATTATTA-ATTAATTTTAAATCATAC-ATTTATTATT
98682184 ATAAATACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
34 1 0.03
35 16 0.50
36 15 0.47
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (36 bp):
TATTATTAATTAATTTTAAATCATACATTTATTATT
Found at i:98682247 original size:3 final size:3
Alignment explanation
Indices: 98682239--98682263 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
98682229 GAATTTTTAG
98682239 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
98682264 AAATCTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:98684310 original size:26 final size:26
Alignment explanation
Indices: 98684280--98684332 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
98684270 AAAATTAAAA
98684280 TTTTCAAAAGCACTTCTCAAAAGTAT
1 TTTTCAAAAGCACTTCTCAAAAGTAT
* * *
98684306 TTTTCCACAGCACTTTTCAAAAGTAT
1 TTTTCAAAAGCACTTCTCAAAAGTAT
98684332 T
1 T
98684333 ATCAAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.38
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGTAT
Found at i:98685965 original size:11 final size:12
Alignment explanation
Indices: 98685943--98685972 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
98685933 CCGTATTACT
98685943 TTTTTTATTATA
1 TTTTTTATTATA
98685955 TTTTTTA-TATA
1 TTTTTTATTATA
98685966 TTTTTTA
1 TTTTTTA
98685973 AAAATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTATTATA
Found at i:98686250 original size:19 final size:18
Alignment explanation
Indices: 98686202--98686251 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
98686192 AAATGGTACC
98686202 AAAATAGTGAAAAAACAAG
1 AAAATAGT-AAAAAACAAG
*
98686221 AAAATAATAAAAAAC-AG
1 AAAATAGTAAAAAACAAG
98686238 CAATAATAGTAAAA
1 -AA-AATAGTAAAA
98686252 GAAAAAAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 2 0.07
18 9 0.33
19 16 0.59
ACGTcount: A:0.70, C:0.06, G:0.10, T:0.14
Consensus pattern (18 bp):
AAAATAGTAAAAAACAAG
Found at i:98688944 original size:3 final size:3
Alignment explanation
Indices: 98688936--98688981 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
98688926 TGCAAACATA
* *
98688936 TAT TAT TAT T-T ATAT TAT TAC TAT TAT TAT TAT TAT TAT TAC TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
98688981 T
1 T
98688982 TCTTTTACGT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 1 0.03
3 35 0.95
4 1 0.03
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:98689136 original size:7 final size:7
Alignment explanation
Indices: 98689110--98689150 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
98689100 TTATTACTTT
98689110 ATTATTA
1 ATTATTA
*
98689117 ATTTAGT-
1 A-TTATTA
98689124 ATTATTA
1 ATTATTA
98689131 ATTATTA
1 ATTATTA
98689138 ATTATT-
1 ATTATTA
98689144 ATTATTA
1 ATTATTA
98689151 TCCTTATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
6 10 0.34
7 15 0.52
8 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (7 bp):
ATTATTA
Found at i:98689248 original size:3 final size:3
Alignment explanation
Indices: 98689242--98689290 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
98689232 TTGTTGTGTC
* * * *
98689242 ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT TTT TTT GTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
98689290 A
1 A
98689291 ATTTTAATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:98689269 original size:18 final size:18
Alignment explanation
Indices: 98689246--98689290 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
98689236 TGTGTCATTA
98689246 TTATTATTATTATTATTG
1 TTATTATTATTATTATTG
* *
98689264 TTATTATTATTTTTTTTG
1 TTATTATTATTATTATTG
98689282 TTATTATTA
1 TTATTATTA
98689291 ATTTTAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (18 bp):
TTATTATTATTATTATTG
Found at i:98689295 original size:15 final size:14
Alignment explanation
Indices: 98689242--98689296 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
98689232 TTGTTGTGTC
98689242 ATTATTATTATTATT
1 ATTATT-TTATTATT
98689257 ATTATTGTTATTATT
1 ATTATT-TTATTATT
* *
98689272 ATTTTTTTTGTTATT
1 A-TTATTTTATTATT
98689287 ATTAATTTTA
1 ATT-ATTTTA
98689297 ATTCTTTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
14 2 0.06
15 27 0.82
16 4 0.12
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (14 bp):
ATTATTTTATTATT
Found at i:98689295 original size:18 final size:18
Alignment explanation
Indices: 98689246--98689296 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
98689236 TGTGTCATTA
98689246 TTATTATT-ATTATTATTG
1 TTATTATTAATT-TTATTG
* *
98689264 TTATTATTATTTTTTTTG
1 TTATTATTAATTTTATTG
98689282 TTATTATTAATTTTA
1 TTATTATTAATTTTA
98689297 ATTCTTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (18 bp):
TTATTATTAATTTTATTG
Found at i:98689398 original size:16 final size:16
Alignment explanation
Indices: 98689373--98689403 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98689363 ATTTAAATTT
98689373 TATTAGTTTTTTATTG
1 TATTAGTTTTTTATTG
*
98689389 TATTATTTTTTTATT
1 TATTAGTTTTTTATT
98689404 ATTTGTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (16 bp):
TATTAGTTTTTTATTG
Found at i:98693953 original size:25 final size:26
Alignment explanation
Indices: 98693898--98693953 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
98693888 GTACGATTGA
98693898 ACCTATGAAAATTTGTTTTTCAATAT
1 ACCTATGAAAATTTGTTTTTCAATAT
98693924 ACCTATGAAAATTTGTTTTTCAATAT
1 ACCTATGAAAATTTGTTTTTCAATAT
98693950 -CCTA
1 ACCTA
98693954 AATTTTTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (26 bp):
ACCTATGAAAATTTGTTTTTCAATAT
Done.