Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 296 of 344
Found at i:98697439 original size:17 final size:17
Alignment explanation
Indices: 98697417--98697451 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
98697407 GGATTTTTGG
*
98697417 AAAAAATTAAAATTAAA
1 AAAAAATTAAAACTAAA
*
98697434 AAAAAATTCAAACTAAA
1 AAAAAATTAAAACTAAA
98697451 A
1 A
98697452 TCCCAACTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAAAATTAAAACTAAA
Found at i:98698919 original size:21 final size:21
Alignment explanation
Indices: 98698895--98698941 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
98698885 TTCTGTTCTG
*
98698895 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
98698916 CTCCGCCTCCCGCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
98698937 CTCCG
1 CTCCG
98698942 TTCTAAGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.00, C:0.57, G:0.21, T:0.21
Consensus pattern (21 bp):
CTCCGCCTCCCGCGCTGCTGC
Found at i:98704544 original size:27 final size:27
Alignment explanation
Indices: 98704506--98704558 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
98704496 ATGTAAGTTG
*
98704506 TTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTAAGTTATGTGAGTTATGTAAA
98704533 TTATGTAAGTTATGTGAGTTATGTAA
1 TTATGTAAGTTATGTGAGTTATGTAA
98704559 GTTGTTATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (27 bp):
TTATGTAAGTTATGTGAGTTATGTAAA
Found at i:98704579 original size:9 final size:9
Alignment explanation
Indices: 98704490--98704561 Score: 81
Period size: 9 Copynumber: 7.7 Consensus size: 9
98704480 ATGTATTAGT
98704490 TAAGTTATG
1 TAAGTTATG
98704499 TAAGTTGTTATG
1 TAA---GTTATG
*
98704511 TACGTTATG
1 TAAGTTATG
*
98704520 TGAGTTATG
1 TAAGTTATG
*
98704529 TAAATTATG
1 TAAGTTATG
98704538 TAAGTTATG
1 TAAGTTATG
*
98704547 TGAGTTATG
1 TAAGTTATG
98704556 TAAGTT
1 TAAGTT
98704562 GTTATGTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
9 44 0.85
12 8 0.15
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:98705031 original size:241 final size:242
Alignment explanation
Indices: 98704601--98705054 Score: 856
Period size: 241 Copynumber: 1.9 Consensus size: 242
98704591 ATGATATATG
98704601 TTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGG
1 TTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGG
* * *
98704666 ATCCGTTATATCTTACAGCTCGATATAAGGCAACTCGTCAGGTTTCCAGCCTATATACTTTGAAT
66 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAAT
98704731 CTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
131 CTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
98704796 AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAC
196 AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAC
*
98704843 TTTTTT-CAAGTCTTTTTGAATTTTTTAAGATTCATCATATGTGGCGTTGTTACACCTAGGGAGG
1 TTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGG
98704907 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAAT
66 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAAT
*
98704972 CTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
131 CTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
98705037 AAGCTACATGGTAATAAA
196 AAGCTACATGGTAATAAA
98705055 ATTAATTCAT
Statistics
Matches: 207, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
241 201 0.97
242 6 0.03
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (242 bp):
TTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGG
ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAAT
CTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAC
Found at i:98705203 original size:23 final size:23
Alignment explanation
Indices: 98705177--98705226 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
98705167 GTTCAAGTTT
98705177 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
98705200 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
98705223 ATTT
1 ATTT
98705227 GATTAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:98705493 original size:27 final size:27
Alignment explanation
Indices: 98705461--98705526 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
98705451 AAAACATGTC
98705461 AATTTCATATACTATAAATCATGCTGA
1 AATTTCATATACTATAAATCATGCTGA
98705488 AATTTCATATACTATAAATCATGCTGA
1 AATTTCATATACTATAAATCATGCTGA
98705515 AATTTCATATAC
1 AATTTCATATAC
98705527 ACAAGTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (27 bp):
AATTTCATATACTATAAATCATGCTGA
Found at i:98706312 original size:14 final size:13
Alignment explanation
Indices: 98706293--98706322 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
98706283 CAATATAATT
98706293 TTACTTCATATATA
1 TTACTTCATATA-A
98706307 TTACTTCATATAA
1 TTACTTCATATAA
98706320 TTA
1 TTA
98706323 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:98707791 original size:19 final size:19
Alignment explanation
Indices: 98707767--98707804 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
98707757 GGTCGTCCAC
98707767 TCGGAGTCTTCAACGGCAG
1 TCGGAGTCTTCAACGGCAG
*
98707786 TCGGAGTTTTCAACGGCAG
1 TCGGAGTCTTCAACGGCAG
98707805 AAGGATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.24
Consensus pattern (19 bp):
TCGGAGTCTTCAACGGCAG
Found at i:98707815 original size:19 final size:19
Alignment explanation
Indices: 98707769--98707809 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
98707759 TCGTCCACTC
* **
98707769 GGAGTCTTCAACGGCAGTC
1 GGAGTTTTCAACGGCAGAA
98707788 GGAGTTTTCAACGGCAGAA
1 GGAGTTTTCAACGGCAGAA
98707807 GGA
1 GGA
98707810 TATTTCGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.34, T:0.20
Consensus pattern (19 bp):
GGAGTTTTCAACGGCAGAA
Found at i:98707869 original size:19 final size:20
Alignment explanation
Indices: 98707822--98707873 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
98707812 TTTCGATTTT
98707822 GATTTGGGGAAATATGTAGG
1 GATTTGGGGAAATATGTAGG
*
98707842 GATTAGGGGAAA-A-GTTAGG
1 GATTTGGGGAAATATG-TAGG
*
98707861 TATTTGGGGAAAT
1 GATTTGGGGAAAT
98707874 TTGGGTGGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 15 0.56
20 11 0.41
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.29
Consensus pattern (20 bp):
GATTTGGGGAAATATGTAGG
Found at i:98708781 original size:26 final size:26
Alignment explanation
Indices: 98708744--98708827 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
98708734 TGATACAAAT
* *
98708744 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98708770 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98708796 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98708822 TGATAA
1 TGATAA
98708828 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:98711831 original size:15 final size:15
Alignment explanation
Indices: 98711813--98711845 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
98711803 GTGAATTTAT
98711813 TTTAAGGGTTTACAA
1 TTTAAGGGTTTACAA
*
98711828 TTT-AGGGTTTATAA
1 TTTAAGGGTTTACAA
98711842 TTTA
1 TTTA
98711846 TGTATAAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
14 13 0.81
15 3 0.19
ACGTcount: A:0.30, C:0.03, G:0.18, T:0.48
Consensus pattern (15 bp):
TTTAAGGGTTTACAA
Found at i:98712688 original size:37 final size:37
Alignment explanation
Indices: 98712612--98712729 Score: 123
Period size: 36 Copynumber: 3.1 Consensus size: 37
98712602 ATAGCTCACC
*
98712612 TTTTGTGGCGTTTGGAACAAAGCGCCACTATGTCTCAGTTT
1 TTTTGTGG-GTTTTGAA-AAA-CGCCACTAT-TCTCAGTTT
98712653 TTTTGTGGTGTTTTGAAAAACG-CACTATTCTCAG-TT
1 TTTTGTGG-GTTTTGAAAAACGCCACTATTCTCAGTTT
* * *
98712689 TTTAGCGGGTTTTGGATAAACGCCACTATTGCTCAGTTT
1 TTTTGTGGGTTTT-GAAAAACGCCACTATT-CTCAGTTT
98712728 TT
1 TT
98712730 AGCGACGTTT
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
35 5 0.07
36 15 0.22
37 13 0.19
38 11 0.16
39 6 0.09
40 3 0.04
41 15 0.22
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (37 bp):
TTTTGTGGGTTTTGAAAAACGCCACTATTCTCAGTTT
Found at i:98712728 original size:38 final size:39
Alignment explanation
Indices: 98712634--98712780 Score: 171
Period size: 39 Copynumber: 3.8 Consensus size: 39
98712624 TGGAACAAAG
* * * *
98712634 CGCCACTA-TGTCTCAGTTTTTTTGTGGTGTTTT-GAAAAA
1 CGCCACTATTG-CTCAG-TTTTTAGCGGCGTTTTGGATAAA
98712673 CG-CACTATT-CTCAGTTTTTAGCGG-GTTTTGGATAAA
1 CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTGGATAAA
*
98712709 CGCCACTATTGCTCAGTTTTTAGCGACGTTTTGGATAAAA
1 CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTGGAT-AAA
*
98712749 TGCCACTATTGCTC-GTTTTTAGCGGCGTTTTG
1 CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTG
98712781 TTTCAACGCG
Statistics
Matches: 96, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
35 5 0.05
36 15 0.16
37 12 0.12
38 19 0.20
39 29 0.30
40 16 0.17
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (39 bp):
CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTGGATAAA
Found at i:98722200 original size:22 final size:22
Alignment explanation
Indices: 98722155--98722200 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
98722145 AAAACAGATG
* *
98722155 ATATATAAAAATTTATATATAT
1 ATATATAAAAATTAAAATATAT
98722177 ATATATAAAAATGTAAAATA-AT
1 ATATATAAAAAT-TAAAATATAT
98722199 AT
1 AT
98722201 TGAAACACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
ATATATAAAAATTAAAATATAT
Found at i:98722421 original size:16 final size:18
Alignment explanation
Indices: 98722391--98722424 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
98722381 TATAAAAGAT
98722391 AATATATAATAAATAAAA
1 AATATATAATAAATAAAA
98722409 AATATAT-AT-AATAAAA
1 AATATATAATAAATAAAA
98722425 TAACTTGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 2 0.12
18 7 0.44
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATATATAATAAATAAAA
Found at i:98722427 original size:21 final size:21
Alignment explanation
Indices: 98722382--98722423 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
98722372 TAGAAAGAAT
*
98722382 ATAAAAGATAATATATAATAA
1 ATAAAAAATAATATATAATAA
98722403 ATAAAAAAT-ATATATAATAA
1 ATAAAAAATAATATATAATAA
98722423 A
1 A
98722424 ATAACTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
ATAAAAAATAATATATAATAA
Found at i:98733538 original size:11 final size:11
Alignment explanation
Indices: 98733524--98733557 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
98733514 CCGTATTACT
98733524 TTTTTATTATA
1 TTTTTATTATA
98733535 TTTTT-TATATA
1 TTTTTAT-TATA
98733546 TTTTTATTATA
1 TTTTTATTATA
98733557 T
1 T
98733558 ATATACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 1 0.05
11 19 0.90
12 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTATTATA
Found at i:98733555 original size:13 final size:13
Alignment explanation
Indices: 98733523--98733561 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
98733513 CCCGTATTAC
98733523 TTTTTTAT-TATA
1 TTTTTTATATATA
98733535 TTTTTTATATAT-
1 TTTTTTATATATA
98733547 TTTTATTATATATA
1 TTTT-TTATATATA
98733561 T
1 T
98733562 ACATAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.50
13 11 0.46
14 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTTATATATA
Found at i:98736500 original size:3 final size:3
Alignment explanation
Indices: 98736492--98736537 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
98736482 TGCAAACATA
* *
98736492 TAT TAT TAT T-T ATAT TAT TAC TAT TAT TAT TAT TAT TAT TAC TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
98736537 T
1 T
98736538 TCTTTTACGT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 1 0.03
3 35 0.95
4 1 0.03
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:98736692 original size:7 final size:7
Alignment explanation
Indices: 98736666--98736706 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
98736656 TTATTACTTT
98736666 ATTATTA
1 ATTATTA
*
98736673 ATTTAGT-
1 A-TTATTA
98736680 ATTATTA
1 ATTATTA
98736687 ATTATTA
1 ATTATTA
98736694 ATTATT-
1 ATTATTA
98736700 ATTATTA
1 ATTATTA
98736707 TCCTTATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
6 10 0.34
7 15 0.52
8 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (7 bp):
ATTATTA
Found at i:98736804 original size:3 final size:3
Alignment explanation
Indices: 98736798--98736849 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
98736788 TTGTTGTGTC
* * *
98736798 ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT -TT ATT -TT -TT TTT GTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
98736843 ATT ATT A
1 ATT ATT A
98736850 ATTTTAATTC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 6 0.14
3 37 0.86
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (3 bp):
ATT
Found at i:98736957 original size:16 final size:16
Alignment explanation
Indices: 98736932--98736962 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98736922 ATTTAAATTT
98736932 TATTAGTTTTTTATTG
1 TATTAGTTTTTTATTG
*
98736948 TATTATTTTTTTATT
1 TATTAGTTTTTTATT
98736963 ATTTGTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (16 bp):
TATTAGTTTTTTATTG
Found at i:98741507 original size:25 final size:26
Alignment explanation
Indices: 98741452--98741507 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
98741442 GTACGATTGA
98741452 ACCTATGAAAATTTGTTTTTCAATAT
1 ACCTATGAAAATTTGTTTTTCAATAT
98741478 ACCTATGAAAATTTGTTTTTCAATAT
1 ACCTATGAAAATTTGTTTTTCAATAT
98741504 -CCTA
1 ACCTA
98741508 AATTTTTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (26 bp):
ACCTATGAAAATTTGTTTTTCAATAT
Found at i:98744930 original size:15 final size:17
Alignment explanation
Indices: 98744910--98744941 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
98744900 GGATTTTTGG
98744910 AAAAATT-AAA-TAAAA
1 AAAAATTCAAACTAAAA
98744925 AAAAATTCAAACTAAAA
1 AAAAATTCAAACTAAAA
98744942 TCCCAACTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAAATTCAAACTAAAA
Found at i:98746400 original size:21 final size:21
Alignment explanation
Indices: 98746376--98746422 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
98746366 TTCTGTTCTG
*
98746376 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
98746397 CTCCGCCTCCCGCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
98746418 CTCCG
1 CTCCG
98746423 TTCTAAGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.00, C:0.57, G:0.21, T:0.21
Consensus pattern (21 bp):
CTCCGCCTCCCGCGCTGCTGC
Found at i:98752001 original size:27 final size:27
Alignment explanation
Indices: 98751963--98752015 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
98751953 ATGTAAGTTG
*
98751963 TTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTAAGTTATGTGAGTTATGTAAA
98751990 TTATGTAAGTTATGTGAGTTATGTAA
1 TTATGTAAGTTATGTGAGTTATGTAA
98752016 GTTGTTATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (27 bp):
TTATGTAAGTTATGTGAGTTATGTAAA
Found at i:98752036 original size:9 final size:9
Alignment explanation
Indices: 98751947--98752018 Score: 81
Period size: 9 Copynumber: 7.7 Consensus size: 9
98751937 ATGTATTAGT
98751947 TAAGTTATG
1 TAAGTTATG
98751956 TAAGTTGTTATG
1 TAA---GTTATG
*
98751968 TACGTTATG
1 TAAGTTATG
*
98751977 TGAGTTATG
1 TAAGTTATG
*
98751986 TAAATTATG
1 TAAGTTATG
98751995 TAAGTTATG
1 TAAGTTATG
*
98752004 TGAGTTATG
1 TAAGTTATG
98752013 TAAGTT
1 TAAGTT
98752019 GTTATGTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
9 44 0.85
12 8 0.15
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:98752488 original size:241 final size:242
Alignment explanation
Indices: 98752058--98752511 Score: 856
Period size: 241 Copynumber: 1.9 Consensus size: 242
98752048 ATGATATATG
98752058 TTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGG
1 TTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGG
* * *
98752123 ATCCGTTATATCTTACAGCTCGATATAAGGCAACTCGTCAGGTTTCCAGCCTATATACTTTGAAT
66 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAAT
98752188 CTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
131 CTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
98752253 AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAC
196 AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAC
*
98752300 TTTTTT-CAAGTCTTTTTGAATTTTTTAAGATTCATCATATGTGGCGTTGTTACACCTAGGGAGG
1 TTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGG
98752364 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAAT
66 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAAT
*
98752429 CTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
131 CTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
98752494 AAGCTACATGGTAATAAA
196 AAGCTACATGGTAATAAA
98752512 ATTAATTCAT
Statistics
Matches: 207, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
241 201 0.97
242 6 0.03
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (242 bp):
TTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGG
ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAAT
CTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAC
Found at i:98752660 original size:23 final size:23
Alignment explanation
Indices: 98752634--98752683 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
98752624 GTTCAAGTTT
98752634 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
98752657 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
98752680 ATTT
1 ATTT
98752684 GATTAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:98752951 original size:27 final size:27
Alignment explanation
Indices: 98752919--98752984 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
98752909 AAAACATGTC
98752919 AATTTCATATACTATAAATCATGCTGA
1 AATTTCATATACTATAAATCATGCTGA
98752946 AATTTCATATACTATAAATCATGCTGA
1 AATTTCATATACTATAAATCATGCTGA
98752973 AATTTCATATAC
1 AATTTCATATAC
98752985 ACAAGTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (27 bp):
AATTTCATATACTATAAATCATGCTGA
Found at i:98753770 original size:14 final size:13
Alignment explanation
Indices: 98753751--98753780 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
98753741 CAATATAATT
98753751 TTACTTCATATATA
1 TTACTTCATATA-A
98753765 TTACTTCATATAA
1 TTACTTCATATAA
98753778 TTA
1 TTA
98753781 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:98755291 original size:19 final size:19
Alignment explanation
Indices: 98755267--98755304 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
98755257 GGTCGTCCAC
98755267 TCGGAGTCTTCAACGGCAG
1 TCGGAGTCTTCAACGGCAG
*
98755286 TCGGAGTTTTCAACGGCAG
1 TCGGAGTCTTCAACGGCAG
98755305 AAGGATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.24
Consensus pattern (19 bp):
TCGGAGTCTTCAACGGCAG
Found at i:98755315 original size:19 final size:19
Alignment explanation
Indices: 98755269--98755309 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
98755259 TCGTCCACTC
* **
98755269 GGAGTCTTCAACGGCAGTC
1 GGAGTTTTCAACGGCAGAA
98755288 GGAGTTTTCAACGGCAGAA
1 GGAGTTTTCAACGGCAGAA
98755307 GGA
1 GGA
98755310 TATTTCGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.34, T:0.20
Consensus pattern (19 bp):
GGAGTTTTCAACGGCAGAA
Found at i:98755369 original size:19 final size:20
Alignment explanation
Indices: 98755322--98755373 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
98755312 TTTCGATTTT
98755322 GATTTGGGGAAATATGTAGG
1 GATTTGGGGAAATATGTAGG
*
98755342 GATTAGGGGAAA-A-GTTAGG
1 GATTTGGGGAAATATG-TAGG
*
98755361 TATTTGGGGAAAT
1 GATTTGGGGAAAT
98755374 TTGGGTGGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 15 0.56
20 11 0.41
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.29
Consensus pattern (20 bp):
GATTTGGGGAAATATGTAGG
Found at i:98756280 original size:26 final size:26
Alignment explanation
Indices: 98756243--98756326 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
98756233 TGATACAAAT
* *
98756243 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98756269 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98756295 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98756321 TGATAA
1 TGATAA
98756327 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:98760407 original size:41 final size:41
Alignment explanation
Indices: 98760246--98760418 Score: 219
Period size: 41 Copynumber: 4.2 Consensus size: 41
98760236 AACCTTTTGT
* *
98760246 GGCG-TTTGGA-ACAAAAGCGCCACTA-TGTCTCAGTTTTTTTGT
1 GGCGTTTTGGATA-AAAA-CGCCACTATTG-CTCAG-TTTTTAGC
* * *
98760288 GGTGTTTT-GAAAAAAACGCCACTATTTCTCAGTTTTTAGC
1 GGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTTTTAGC
98760328 GGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTTTTAGC
1 GGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTTTTAGC
* *
98760369 GACGTTTTGGATAAAAATGCCACTATTGCTCAGTTTTTAGC
1 GGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTTTTAGC
98760410 GGCGTTTTG
1 GGCGTTTTG
98760419 TTTCAAACGC
Statistics
Matches: 117, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
40 13 0.11
41 90 0.77
42 10 0.09
43 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (41 bp):
GGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTTTTAGC
Found at i:98762540 original size:16 final size:16
Alignment explanation
Indices: 98762485--98762540 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
98762475 CGTTTGGTTC
98762485 ACTGTAATGGAATATG-
1 ACTGTAATGGAATA-GA
* *
98762501 ATTGTAATTGAATAGA
1 ACTGTAATGGAATAGA
* *
98762517 GCTATAATGGAATAGA
1 ACTGTAATGGAATAGA
98762533 ACTGTAAT
1 ACTGTAAT
98762541 CAGTAATTCC
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
15 1 0.03
16 30 0.97
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.32
Consensus pattern (16 bp):
ACTGTAATGGAATAGA
Found at i:98762586 original size:39 final size:40
Alignment explanation
Indices: 98762543--98762627 Score: 93
Period size: 39 Copynumber: 2.1 Consensus size: 40
98762533 ACTGTAATCA
*
98762543 GTAATTCCATTGTTTG-ATTGAATGGAATGGAATAGA-GTT
1 GTAATACCATT-TTTGTATTGAATGGAATGGAATAGATGTT
** * * *
98762582 GTAATAGTATTTTTGTATTTAGTTGAATGGAATAGATGTT
1 GTAATACCATTTTTGTATTGAATGGAATGGAATAGATGTT
98762622 GTAATA
1 GTAATA
98762628 ATATAAGAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
38 4 0.11
39 25 0.66
40 9 0.24
ACGTcount: A:0.32, C:0.02, G:0.24, T:0.42
Consensus pattern (40 bp):
GTAATACCATTTTTGTATTGAATGGAATGGAATAGATGTT
Found at i:98762870 original size:58 final size:57
Alignment explanation
Indices: 98762709--98762846 Score: 168
Period size: 60 Copynumber: 2.4 Consensus size: 57
98762699 TGTTATTAAG
* * * * * * * *
98762709 TTTTAATAAAATTATTGTTAAATATATTTTAATAAAAATAAAAATAATAATTTAATCATA
1 TTTTAATATAATTATTATTAAATACAATTTAAT-AAAAT-AATAT-ACAATTTAATAACA
98762769 TTTTAATATAATTATTATTAAATACAATTTAATAAAATAATATACAATTTAATAACA
1 TTTTAATATAATTATTATTAAATACAATTTAATAAAATAATATACAATTTAATAACA
98762826 TTCTTAATATAATTATTATTA
1 TT-TTAATATAATTATTATTA
98762847 TATGAATTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
57 13 0.19
58 22 0.32
59 5 0.07
60 29 0.42
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.45
Consensus pattern (57 bp):
TTTTAATATAATTATTATTAAATACAATTTAATAAAATAATATACAATTTAATAACA
Found at i:98769174 original size:16 final size:18
Alignment explanation
Indices: 98769153--98769185 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
98769143 CTTTTCTTTT
98769153 TTCTCTT-TA-TTTTCCA
1 TTCTCTTCTACTTTTCCA
98769169 TTCTCTTCTACTTTTCC
1 TTCTCTTCTACTTTTCC
98769186 CTCTGTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (18 bp):
TTCTCTTCTACTTTTCCA
Found at i:98770434 original size:22 final size:22
Alignment explanation
Indices: 98770389--98770434 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
98770379 AAAACAGATG
* *
98770389 ATATATAAAAATTTATATATAT
1 ATATATAAAAATTAAAATATAT
98770411 ATATATAAAAATGTAAAATA-AT
1 ATATATAAAAAT-TAAAATATAT
98770433 AT
1 AT
98770435 TGAAACACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
ATATATAAAAATTAAAATATAT
Found at i:98770643 original size:21 final size:21
Alignment explanation
Indices: 98770617--98770659 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
98770607 TAGAAAGAAT
98770617 ATAAAAGATA-ATATATAATAA
1 ATAAAA-ATATATATATAATAA
98770638 ATAAAAATATATATATAATAA
1 ATAAAAATATATATATAATAA
98770659 A
1 A
98770660 ATAACTTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (21 bp):
ATAAAAATATATATATAATAA
Found at i:98770646 original size:17 final size:17
Alignment explanation
Indices: 98770626--98770660 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
98770616 TATAAAAGAT
98770626 AATATATA-ATAAATAAA
1 AATATATATAT-AATAAA
98770643 AATATATATATAATAAA
1 AATATATATATAATAAA
98770660 A
1 A
98770661 TAACTTGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AATATATATATAATAAA
Found at i:98772933 original size:46 final size:46
Alignment explanation
Indices: 98772865--98773047 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
98772855 TATATATACA
* * * * *
98772865 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACGACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
** *
98772911 CATCTCATACATGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
98772957 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
98773003 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
98773048 ATACACTTCC
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:98773092 original size:47 final size:47
Alignment explanation
Indices: 98773021--98773119 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
98773011 ACACATTTCG
* *
98773021 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTAGCCATTCGGCCTTACCACATATATACA-TGTCCACATTCATCA
* * * *
98773068 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACATATATACATGTCCACATTCATCA
98773115 CATTA
1 CATTA
98773120 AATCCTAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 1 0.02
47 43 0.98
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACATATATACATGTCCACATTCATCA
Found at i:98782848 original size:34 final size:34
Alignment explanation
Indices: 98782766--98782853 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
98782756 TAGCTATAAA
* *
98782766 AAAATTAAATAAAAATATTTTATTTTTATTTTTTC
1 AAAATTAAA-AAATATATTTTATTTCTATTTTTTC
*** * * *
98782801 ATTTTTAATAAATATTTTTTATTTCTATTTTTTG
1 AAAATTAAAAAATATATTTTATTTCTATTTTTTC
98782835 AAAATTAAAAAATATATTT
1 AAAATTAAAAAATATATTT
98782854 AGCAAACAAA
Statistics
Matches: 40, Mismatches: 13, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
34 35 0.88
35 5 0.12
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (34 bp):
AAAATTAAAAAATATATTTTATTTCTATTTTTTC
Found at i:98784747 original size:6 final size:6
Alignment explanation
Indices: 98784738--98784768 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
98784728 GCCACCATCA
98784738 GCCACT GCCACT GCCACT GCCACT GCCACT G
1 GCCACT GCCACT GCCACT GCCACT GCCACT G
98784769 TCACCTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.48, G:0.19, T:0.16
Consensus pattern (6 bp):
GCCACT
Found at i:98789594 original size:19 final size:19
Alignment explanation
Indices: 98789542--98789586 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
98789532 TGCCTCTTTT
*
98789542 TGCATT-CATTTCATTCATC
1 TGCATTACATTTCA-TCATA
98789561 TGCATTACATTTCATCATA
1 TGCATTACATTTCATCATA
98789580 TGCATTA
1 TGCATTA
98789587 AGTTTCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (19 bp):
TGCATTACATTTCATCATA
Found at i:98795693 original size:6 final size:6
Alignment explanation
Indices: 98795682--98795721 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
98795672 GAATGATAAG
*
98795682 AAAAAT AAAAAT AAAAAT AAAAAT AATTAA- AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT AAAAAT AAAA
98795722 TATGAGAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 2 0.07
6 26 0.87
7 2 0.07
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:98795917 original size:20 final size:18
Alignment explanation
Indices: 98795869--98795923 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 18
98795859 TGCGCTGGGT
98795869 GAAGGGAGAAGAGAAGAAAG
1 GAAGGGA-AAGA-AAGAAAG
*
98795889 GATGGGAAAGAAAGAAAGTG
1 GAAGGGAAAGAAAGAAA--G
*
98795909 GAAGGGAAAGGAAGA
1 GAAGGGAAAGAAAGA
98795924 GGAGAATGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 6 0.20
19 4 0.13
20 20 0.67
ACGTcount: A:0.53, C:0.00, G:0.44, T:0.04
Consensus pattern (18 bp):
GAAGGGAAAGAAAGAAAG
Found at i:98797224 original size:22 final size:22
Alignment explanation
Indices: 98797198--98797239 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
98797188 GTCGTCCTAG
98797198 AATCAAAGGCACATCACTATAA
1 AATCAAAGGCACATCACTATAA
*
98797220 AATCAAAGGCACGTCACTAT
1 AATCAAAGGCACATCACTAT
98797240 CTTCTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.24, G:0.12, T:0.19
Consensus pattern (22 bp):
AATCAAAGGCACATCACTATAA
Found at i:98807185 original size:24 final size:24
Alignment explanation
Indices: 98807153--98807200 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
98807143 GGGAAAATGA
98807153 TTGAGACTTATAAAGATTGGCATG
1 TTGAGACTTATAAAGATTGGCATG
98807177 TTGAGACTTATAAAGATTGGCATG
1 TTGAGACTTATAAAGATTGGCATG
98807201 AGAAGTTACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.33
Consensus pattern (24 bp):
TTGAGACTTATAAAGATTGGCATG
Found at i:98808659 original size:44 final size:44
Alignment explanation
Indices: 98808590--98808764 Score: 163
Period size: 44 Copynumber: 4.0 Consensus size: 44
98808580 CATCGTGGCG
* * * *
98808590 AATCTTATCTCCTTGGAGTTACAGTGGAGCAGATTAAAGCCAAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
* * * *
98808634 TATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTATA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-AC
* * * * *
98808678 AATCTTAGCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
* * * * *
98808722 GAATCTCATTTCCCTAAAGTTGCAGTAGAACAGATTAAAGCTA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
98808765 CAAGTCACAA
Statistics
Matches: 105, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
44 71 0.68
45 34 0.32
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
Found at i:98808887 original size:44 final size:44
Alignment explanation
Indices: 98808824--98808983 Score: 164
Period size: 44 Copynumber: 3.6 Consensus size: 44
98808814 TACCATGGTA
* * *
98808824 AATCTCATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCCACT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACT
** *
98808868 AATCTTATCTCCCTAAAGTTATAGTGGAGCAGATTGAAGCCACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACT
* * * *
98808912 AATCTTATCTCCTTGAAA-TTGCAGTGGAACAGACTGAAG--ATGT
1 AATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTGAAGCCA-CT
* *
98808955 GAATCTTATTTCCCTACAGTTGCAGTGGA
1 -AATCTTATCTCCCTAAAGTTGCAGTGGA
98808984 ATAGATTAAA
Statistics
Matches: 96, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 90 0.94
45 3 0.03
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACT
Found at i:98810716 original size:4 final size:4
Alignment explanation
Indices: 98810695--98810730 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
98810685 TTTTCCTCAA
* *
98810695 TATT CATT TATG TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT
98810731 CCCTTTGTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (4 bp):
TATT
Found at i:98810830 original size:16 final size:15
Alignment explanation
Indices: 98810805--98810837 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
98810795 ATTGTTATCA
98810805 TTGTTATTATTTATT
1 TTGTTATTATTTATT
98810820 TTGTTATTTATTTATT
1 TTGTTA-TTATTTATT
98810836 TT
1 TT
98810838 TGATTGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (15 bp):
TTGTTATTATTTATT
Found at i:98813510 original size:3 final size:3
Alignment explanation
Indices: 98813464--98813491 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
98813454 TCACGGTAAG
98813464 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
98813492 ACTGCTGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:98813651 original size:11 final size:11
Alignment explanation
Indices: 98813625--98813660 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
98813615 TATCTTTCAC
*
98813625 ATTTATCTTAT
1 ATTTTTCTTAT
98813636 A-TTTTCTTAT
1 ATTTTTCTTAT
98813646 ATTTTTCTTAT
1 ATTTTTCTTAT
98813657 ATTT
1 ATTT
98813661 ATGATACTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (11 bp):
ATTTTTCTTAT
Found at i:98819814 original size:18 final size:18
Alignment explanation
Indices: 98819791--98819826 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
98819781 ATTGGTTGCA
*
98819791 AGGACGATGAGGATGATG
1 AGGACGATAAGGATGATG
98819809 AGGACGATAAGGATGATG
1 AGGACGATAAGGATGATG
98819827 TTTCTTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.42, T:0.17
Consensus pattern (18 bp):
AGGACGATAAGGATGATG
Found at i:98820032 original size:11 final size:11
Alignment explanation
Indices: 98820012--98820099 Score: 54
Period size: 11 Copynumber: 7.9 Consensus size: 11
98820002 CCGTTGTTTG
*
98820012 GTGCTATTTTT
1 GTGCTGTTTTT
98820023 GTGCTG-TTTT
1 GTGCTGTTTTT
*
98820033 GTTGCT-ATTTT
1 G-TGCTGTTTTT
*
98820044 GTTGCTGTTTTG
1 G-TGCTGTTTTT
* *
98820056 GTGCTATTTTG
1 GTGCTGTTTTT
* *
98820067 GTGTTGTTTTG
1 GTGCTGTTTTT
*
98820078 GTGCTACTTTTT
1 GTGCT-GTTTTT
*
98820090 GTGGTGTTTT
1 GTGCTGTTTT
98820100 ATTGTTCTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
10 5 0.08
11 45 0.73
12 12 0.19
ACGTcount: A:0.05, C:0.08, G:0.27, T:0.60
Consensus pattern (11 bp):
GTGCTGTTTTT
Found at i:98820038 original size:22 final size:22
Alignment explanation
Indices: 98820008--98820099 Score: 123
Period size: 22 Copynumber: 4.1 Consensus size: 22
98819998 ACTGCCGTTG
98820008 TTTGGTGCTATTTTTGTGCTGT
1 TTTGGTGCTATTTTTGTGCTGT
*
98820030 TTTGTTGCTA-TTTTGTTGCTGT
1 TTTGGTGCTATTTTTG-TGCTGT
* *
98820052 TTTGGTGCTATTTTGGTGTTGT
1 TTTGGTGCTATTTTTGTGCTGT
*
98820074 TTTGGTGCTACTTTTTGTGGTGT
1 TTTGGTGCTA-TTTTTGTGCTGT
98820097 TTT
1 TTT
98820100 ATTGTTCTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
21 5 0.08
22 39 0.64
23 17 0.28
ACGTcount: A:0.04, C:0.08, G:0.27, T:0.61
Consensus pattern (22 bp):
TTTGGTGCTATTTTTGTGCTGT
Found at i:98821800 original size:15 final size:16
Alignment explanation
Indices: 98821782--98821811 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
98821772 ATAAATTTCA
98821782 ATATTTTT-AATTTTT
1 ATATTTTTCAATTTTT
98821797 ATATTTTTCAATTTT
1 ATATTTTTCAATTTT
98821812 AATTAATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
ATATTTTTCAATTTTT
Found at i:98821968 original size:19 final size:17
Alignment explanation
Indices: 98821944--98821981 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 17
98821934 TTTTACTAAA
98821944 TATATATTTTCTAAATTTT
1 TATATATTTT-T-AATTTT
98821963 TATATATTTTTAATTTT
1 TATATATTTTTAATTTT
98821980 TA
1 TA
98821982 ATTAATTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
19 10 0.53
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (17 bp):
TATATATTTTTAATTTT
Found at i:98824429 original size:15 final size:17
Alignment explanation
Indices: 98824409--98824442 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
98824399 AGGGTATTTC
98824409 AAACAAT-ATA-ATAAT
1 AAACAATAATATATAAT
98824424 AAACAATAATATATAAT
1 AAACAATAATATATAAT
98824441 AA
1 AA
98824443 TTAGTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 3 0.18
17 7 0.41
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
AAACAATAATATATAAT
Found at i:98825065 original size:23 final size:25
Alignment explanation
Indices: 98825039--98825084 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
98825029 TCAAATTGTA
98825039 TTTGAATATTGGA-TTTA-ATTTTC
1 TTTGAATATTGGACTTTAGATTTTC
* *
98825062 TTTGTATTTTGGACTTTAGATTT
1 TTTGAATATTGGACTTTAGATTT
98825085 GGGCTAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 4 0.21
25 4 0.21
ACGTcount: A:0.22, C:0.04, G:0.15, T:0.59
Consensus pattern (25 bp):
TTTGAATATTGGACTTTAGATTTTC
Found at i:98838135 original size:15 final size:14
Alignment explanation
Indices: 98838115--98838145 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
98838105 ACAATCAAGG
98838115 TTTTCTTTTTTCTTT
1 TTTTCTTTTTT-TTT
98838130 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
98838144 TT
1 TT
98838146 GGTAAAGGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTCTTTTTTTTT
Found at i:98860881 original size:15 final size:15
Alignment explanation
Indices: 98860861--98860892 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
98860851 CTTTATTCTC
98860861 AAACACATATAATTA
1 AAACACATATAATTA
98860876 AAACACATATAATTA
1 AAACACATATAATTA
98860891 AA
1 AA
98860893 TATAAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (15 bp):
AAACACATATAATTA
Found at i:98861581 original size:15 final size:13
Alignment explanation
Indices: 98861561--98861608 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 13
98861551 TTTTATTTAA
98861561 TAATTTTATAAAATT
1 TAATTTT-TAAAA-T
98861576 TAATTTTTAAAAAT
1 TAATTTTT-AAAAT
*
98861590 TATTTTTTTAAAAT
1 TA-ATTTTTAAAAT
98861604 TAATT
1 TAATT
98861609 AAAAAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
13 2 0.07
14 11 0.38
15 16 0.55
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATTTTTAAAAT
Found at i:98861596 original size:14 final size:14
Alignment explanation
Indices: 98861563--98861605 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
98861553 TTATTTAATA
* *
98861563 ATTTTATAAAATTT
1 ATTTTTTAAAAATT
*
98861577 AATTTTTAAAAATT
1 ATTTTTTAAAAATT
*
98861591 ATTTTTTTAAAATT
1 ATTTTTTAAAAATT
98861605 A
1 A
98861606 ATTAAAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTTTTTAAAAATT
Found at i:98861951 original size:19 final size:19
Alignment explanation
Indices: 98861923--98861959 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
98861913 CCTTTAGCCA
*
98861923 AAATTTTAAAATATAAAAG
1 AAATTATAAAATATAAAAG
*
98861942 AAATTATAAATTATAAAA
1 AAATTATAAAATATAAAA
98861960 ATATATGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (19 bp):
AAATTATAAAATATAAAAG
Found at i:98862326 original size:15 final size:17
Alignment explanation
Indices: 98862295--98862329 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
98862285 ATTTACTAAG
98862295 TTTTGAGGTTCTGAGTT
1 TTTTGAGGTTCTGAGTT
98862312 TTTTG-GGTTCT-AGTT
1 TTTTGAGGTTCTGAGTT
98862327 TTT
1 TTT
98862330 GGGCTTATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 6 0.33
17 5 0.28
ACGTcount: A:0.09, C:0.06, G:0.26, T:0.60
Consensus pattern (17 bp):
TTTTGAGGTTCTGAGTT
Found at i:98865817 original size:13 final size:13
Alignment explanation
Indices: 98865799--98865825 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
98865789 GGGATTTGTT
98865799 TTAACTAAACTAA
1 TTAACTAAACTAA
98865812 TTAACTAAACTAA
1 TTAACTAAACTAA
98865825 T
1 T
98865826 AATGCACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:98869621 original size:17 final size:17
Alignment explanation
Indices: 98869599--98869636 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
98869589 CTCCGAGACA
98869599 GAACTGGACCATTCCAG
1 GAACTGGACCATTCCAG
98869616 GAACTGGACCATTCCAG
1 GAACTGGACCATTCCAG
98869633 GAAC
1 GAAC
98869637 ATCGAACTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.32, C:0.29, G:0.24, T:0.16
Consensus pattern (17 bp):
GAACTGGACCATTCCAG
Found at i:98875793 original size:46 final size:46
Alignment explanation
Indices: 98875720--98876218 Score: 703
Period size: 46 Copynumber: 10.8 Consensus size: 46
98875710 TGATGTCATA
* * *
98875720 GTATCTTTCAACTATGGTTTTACTCATTTTC-TATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
* * *** *
98875766 GTATCTTTCAACCATTGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
*
98875813 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
98875859 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
98875905 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* * *** *
98875951 GTATCTTTCAACTATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
98875998 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
** **
98876044 GTATCTTTCAACCATGGTCTTTTTCATTTCATATCACATTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
98876090 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
98876136 GTATCTTTCAGCCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
98876182 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
98876219 AGAGCACACT
Statistics
Matches: 410, Mismatches: 41, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
46 333 0.81
47 77 0.19
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
Found at i:98876037 original size:185 final size:185
Alignment explanation
Indices: 98875720--98876218 Score: 804
Period size: 185 Copynumber: 2.7 Consensus size: 185
98875710 TGATGTCATA
* * * * *
98875720 GTATCTTTCAACTATGGTTTTACTCATTTTC-TATCATGTTGCCATGGTATCTTTCAACCATTGT
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCACGTTGCCATGGTATCTTTCAACCATGGT
*
98875784 CTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCA
65 CTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
*
98875849 GGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
130 GGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACATTGCCATG
*
98875905 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACTATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
98875970 TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
66 TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
*
98876035 GTTGCCATGGTATCTTTCAACCATGGTCTTTTTCATTTCATATCACATTGCCATG
131 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACATTGCCATG
* *
98876090 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAGCCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
** *** * * *
98876155 TTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
66 TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
98876219 AGAGCACACT
Statistics
Matches: 293, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
184 55 0.19
185 238 0.81
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (185 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACATTGCCATG
Found at i:98884417 original size:63 final size:63
Alignment explanation
Indices: 98884338--98884544 Score: 209
Period size: 63 Copynumber: 3.3 Consensus size: 63
98884328 AAGACATAGG
* * * * *
98884338 TATGTAACTCATTGTTTTAGAATAAAAGGTATACGGGCTAGAGACACAAGCGTGTGTCCAGGC
1 TATGTAACTCACTGTTTTAGAATAAAAGGTACACGGGCTGGAGACACAGGCGTGTGTCCAAGC
* * * * * * * * *
98884401 TATGTAACTCACTGTTTTGGAATTAGAGGCACATGGGCTGGAGAAACGGGTGTGTGTCTAAGC
1 TATGTAACTCACTGTTTTAGAATAAAAGGTACACGGGCTGGAGACACAGGCGTGTGTCCAAGC
* * * * *
98884464 -AGTGTAACTTACTGTTTTAGAATCAAAGGTACACGGGCTGGAGACATAGGCATGTGTCCATGC
1 TA-TGTAACTCACTGTTTTAGAATAAAAGGTACACGGGCTGGAGACACAGGCGTGTGTCCAAGC
* *
98884527 CATGTAACTCACTATTTT
1 TATGTAACTCACTGTTTT
98884545 GGAAATAGAT
Statistics
Matches: 113, Mismatches: 29, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
62 1 0.01
63 111 0.98
64 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (63 bp):
TATGTAACTCACTGTTTTAGAATAAAAGGTACACGGGCTGGAGACACAGGCGTGTGTCCAAGC
Found at i:98887634 original size:25 final size:25
Alignment explanation
Indices: 98887606--98887657 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
98887596 AACTCAAGTT
*
98887606 TACCAATTTGTAGTTTCTTGGACAC
1 TACCAATTAGTAGTTTCTTGGACAC
98887631 TACCAATTAGTAGTTTCTTGGACAC
1 TACCAATTAGTAGTTTCTTGGACAC
98887656 TA
1 TA
98887658 AGTAACCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (25 bp):
TACCAATTAGTAGTTTCTTGGACAC
Found at i:98892784 original size:19 final size:19
Alignment explanation
Indices: 98892762--98892801 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
98892752 ATGGGTAGTT
98892762 TTTTTAATACTTGACTGCA
1 TTTTTAATACTTGACTGCA
98892781 TTTTTAATACTTGACTGCA
1 TTTTTAATACTTGACTGCA
98892800 TT
1 TT
98892802 CATATACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (19 bp):
TTTTTAATACTTGACTGCA
Found at i:98896245 original size:17 final size:17
Alignment explanation
Indices: 98896220--98896253 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
98896210 CATAGATGAA
* *
98896220 AATATGATAGTGATAAT
1 AATACGATAGTAATAAT
98896237 AATACGATAGTAATAAT
1 AATACGATAGTAATAAT
98896254 GATAATAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.15, T:0.32
Consensus pattern (17 bp):
AATACGATAGTAATAAT
Found at i:98896330 original size:3 final size:3
Alignment explanation
Indices: 98896322--98896465 Score: 103
Period size: 3 Copynumber: 47.0 Consensus size: 3
98896312 TAAAGAGTGT
* *
98896322 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAT TGA TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * * **
98896367 TAA TAA -AA GGAA TAA AAA TAA TAG TAA CAA TAA GAA TGT TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
98896412 TAA CAA TAA TCA TAA TATA TACA TGAA TAA TAA CAA TAA CAA TAA TAG
1 TAA TAA TAA TAA TAA TA-A TA-A T-AA TAA TAA TAA TAA TAA TAA TAA
98896460 TAA TAA
1 TAA TAA
98896466 GGACACAACA
Statistics
Matches: 107, Mismatches: 28, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
2 4 0.04
3 90 0.84
4 12 0.11
5 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:98896566 original size:7 final size:7
Alignment explanation
Indices: 98896554--98896613 Score: 50
Period size: 7 Copynumber: 8.3 Consensus size: 7
98896544 TAATAAGGAC
98896554 AATAATA
1 AATAATA
98896561 AATAATA
1 AATAATA
*
98896568 ATTAAT-
1 AATAATA
*
98896574 AATATTA
1 AATAATA
*
98896581 AATTAATT
1 AA-TAATA
98896589 AATAATAA
1 AATAAT-A
*
98896597 AACAATA
1 AATAATA
98896604 AATAAATA
1 AAT-AATA
98896612 AA
1 AA
98896614 CACAAAAAGA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
6 4 0.10
7 21 0.51
8 16 0.39
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:98897819 original size:17 final size:17
Alignment explanation
Indices: 98897789--98897821 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
98897779 AAAAGTAATG
98897789 ATATGTAAATAAAATAA
1 ATATGTAAATAAAATAA
98897806 ATATGCTAAA-AAAATA
1 ATATG-TAAATAAAATA
98897822 TACAGTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (17 bp):
ATATGTAAATAAAATAA
Found at i:98897919 original size:3 final size:3
Alignment explanation
Indices: 98897913--98898132 Score: 71
Period size: 3 Copynumber: 73.3 Consensus size: 3
98897903 AAAATACAAC
* * * *
98897913 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
98897956 AAT AGT AAC AAT -AT GAC GAT AAT AGT AAA AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * **
98898000 AAT AGT AAT AA- AAGT AGT GCT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
98898045 -CT ATT AAGT TAT AAT GAA- AAT AAT GAT AAT GAT GAT -AT ATT AGAT
1 AAT AAT AA-T AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* *
98898090 AAT AAT AGT AAAT AAT AAGT AAT AAT AAT AAAT TAT AAT AAT A
1 AAT AAT AAT -AAT AAT AA-T AAT AAT AAT -AAT AAT AAT AAT A
98898133 GTGATGAGAA
Statistics
Matches: 158, Mismatches: 41, Indels: 36
0.67 0.17 0.15
Matches are distributed among these distances:
2 16 0.10
3 123 0.78
4 19 0.12
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:98897919 original size:22 final size:22
Alignment explanation
Indices: 98897868--98897928 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
98897858 ATAAGTAAAT
* *
98897868 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
98897889 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
98897911 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
98897929 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:98898151 original size:16 final size:16
Alignment explanation
Indices: 98898132--98898163 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98898122 TTATAATAAT
98898132 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
98898148 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
98898164 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:98898296 original size:16 final size:16
Alignment explanation
Indices: 98898267--98898304 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
98898257 TATACGTATG
*
98898267 AAAA-ATAATGATAGT
1 AAAATATAATAATAGT
98898282 AAAATATAATAATAGT
1 AAAATATAATAATAGT
98898298 AATAATA
1 AA-AATA
98898305 ATAGTGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 12 0.60
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (16 bp):
AAAATATAATAATAGT
Found at i:98898411 original size:3 final size:3
Alignment explanation
Indices: 98898403--98898429 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
98898393 ACACTACCAT
98898403 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
98898430 TAGAAATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:98899406 original size:3 final size:3
Alignment explanation
Indices: 98899398--98899449 Score: 70
Period size: 3 Copynumber: 17.3 Consensus size: 3
98899388 TGGGCCATAC
* *
98899398 AAT AAT AAT AGT GAT AAT AAT AAT AAT AAT AAT -AT AAT AAGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
98899443 AAT AAT A
1 AAT AAT A
98899450 TATTAATTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 38 0.88
4 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:98899430 original size:24 final size:24
Alignment explanation
Indices: 98899398--98899449 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
98899388 TGGGCCATAC
*
98899398 AATAATAATAGTGATAA-TAATAAT
1 AATAATAATA-TAATAAGTAATAAT
98899422 AATAATAATATAATAAGTAATAAT
1 AATAATAATATAATAAGTAATAAT
98899446 AATA
1 AATA
98899450 TATTAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (24 bp):
AATAATAATATAATAAGTAATAAT
Found at i:98899444 original size:18 final size:17
Alignment explanation
Indices: 98899398--98899456 Score: 73
Period size: 18 Copynumber: 3.4 Consensus size: 17
98899388 TGGGCCATAC
* *
98899398 AATAATAATAGTGATAAT
1 AATAATAATAATAAT-AT
98899416 AATAATAATAATAATAT
1 AATAATAATAATAATAT
98899433 AATAAGTAATAATAATAT
1 AATAA-TAATAATAATAT
*
98899451 ATTAAT
1 AATAAT
98899457 TTAATTAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
17 8 0.22
18 29 0.78
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (17 bp):
AATAATAATAATAATAT
Found at i:98899456 original size:21 final size:20
Alignment explanation
Indices: 98899398--98899456 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
98899388 TGGGCCATAC
98899398 AATAATAATAGTGA-TAATAAT
1 AATAATAATA-T-ATTAATAAT
98899419 AATAATAATA-ATATAATAAGT
1 AATAATAATATAT-TAATAA-T
98899440 AATAATAATATATTAAT
1 AATAATAATATATTAAT
98899457 TTAATTAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.03
20 6 0.18
21 25 0.74
22 2 0.06
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
AATAATAATATATTAATAAT
Found at i:98901068 original size:18 final size:16
Alignment explanation
Indices: 98901030--98901063 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
98901020 AAATATTCAC
*
98901030 TTAATAAAAAATATTT
1 TTAACAAAAAATATTT
*
98901046 GTAACAAAAAATATTT
1 TTAACAAAAAATATTT
98901062 TT
1 TT
98901064 TTAACTTTTT
Statistics
Matches: 15, Mismatches: 3, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (16 bp):
TTAACAAAAAATATTT
Found at i:98902351 original size:29 final size:29
Alignment explanation
Indices: 98902318--98902373 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
98902308 TTTTCGTAAA
98902318 TAATTA-TTT-TCACTATCCATTTTTATAAT
1 TAATTACTTTATCA-TAT-CATTTTTATAAT
*
98902347 TAATTACTTTATCATATTATTTTTATA
1 TAATTACTTTATCATATCATTTTTATA
98902374 TAAGAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 15 0.62
30 6 0.25
31 3 0.12
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (29 bp):
TAATTACTTTATCATATCATTTTTATAAT
Found at i:98903618 original size:38 final size:39
Alignment explanation
Indices: 98903566--98903657 Score: 168
Period size: 39 Copynumber: 2.4 Consensus size: 39
98903556 ATCTCTTTAT
98903566 TTATTTATATTTTATCA-TTCTAATATCCTACCCATATAG
1 TTATTT-TATTTTATCATTTCTAATATCCTACCCATATAG
98903605 TTATTTTATTTTATCATTTCTAATATCCTACCCATATAG
1 TTATTTTATTTTATCATTTCTAATATCCTACCCATATAG
98903644 TTATTTTATTTTAT
1 TTATTTTATTTTAT
98903658 TTTATTTTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
38 10 0.19
39 42 0.81
ACGTcount: A:0.28, C:0.15, G:0.02, T:0.54
Consensus pattern (39 bp):
TTATTTTATTTTATCATTTCTAATATCCTACCCATATAG
Found at i:98904781 original size:32 final size:31
Alignment explanation
Indices: 98904744--98904870 Score: 139
Period size: 31 Copynumber: 4.0 Consensus size: 31
98904734 GTATAAAAAA
* * * *
98904744 TAAATTAATTTATATTTTATGTATTATTTTAT
1 TAAATT-ATTTAAATTTCATTTATTATTATAT
* * *
98904776 TAAATTAATTAAATATTTCATATATCATTATA-
1 TAAATT-ATTTAA-ATTTCATTTATTATTATAT
*
98904808 TAAATTATTTAAATATCATTTATTATTATAT
1 TAAATTATTTAAATTTCATTTATTATTATAT
*
98904839 TAAATTATTTAAATTTCATTTATTAGTATAT
1 TAAATTATTTAAATTTCATTTATTATTATAT
98904870 T
1 T
98904871 TAAGTTTTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
30 15 0.19
31 35 0.43
32 17 0.21
33 14 0.17
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (31 bp):
TAAATTATTTAAATTTCATTTATTATTATAT
Found at i:98904847 original size:8 final size:9
Alignment explanation
Indices: 98904802--98904853 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
98904792 TTCATATATC
*
98904802 ATTATATAA
1 ATTATTTAA
98904811 ATTATTTAA
1 ATTATTTAA
*
98904820 ATATCATTTATT
1 AT-T-ATTTA-A
98904832 ATTATATTAA
1 ATTAT-TTAA
98904842 ATTATTTAA
1 ATTATTTAA
98904851 ATT
1 ATT
98904854 TCATTTATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 17 0.47
10 8 0.22
11 9 0.25
12 2 0.06
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (9 bp):
ATTATTTAA
Found at i:98904905 original size:23 final size:24
Alignment explanation
Indices: 98904879--98904932 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
98904869 TTTAAGTTTT
* *
98904879 TTTAAAAA-ATTTTGTATT-ATTAA
1 TTTAAAAATAATTTATATTAATT-A
98904902 TTTAAAAATAATTTATATTAATTA
1 TTTAAAAATAATTTATATTAATTA
98904926 TTTAAAA
1 TTTAAAA
98904933 GCTTTTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 8 0.30
24 16 0.59
25 3 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTAAAAATAATTTATATTAATTA
Found at i:98909332 original size:17 final size:17
Alignment explanation
Indices: 98909310--98909344 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
98909300 CGGAGGGCTC
98909310 AGTGGTGGCCACAAGTA
1 AGTGGTGGCCACAAGTA
98909327 AGTGGTGGCCACAAGTA
1 AGTGGTGGCCACAAGTA
98909344 A
1 A
98909345 ATTTTAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.17, G:0.34, T:0.17
Consensus pattern (17 bp):
AGTGGTGGCCACAAGTA
Found at i:98914111 original size:64 final size:64
Alignment explanation
Indices: 98914010--98914134 Score: 160
Period size: 64 Copynumber: 2.0 Consensus size: 64
98914000 ATTGGGATAG
* * * * * *
98914010 TTCTTAATTAATTTGGTTAACATTACCGGCATAGGAATATAGCTCCATAGTTAGATTAATTTAA
1 TTCTTAATCAATTTGGTCAACATTACCAGCATAGGAATATAGCTCAACAATTAGATTAATTTAA
* ** *
98914074 TTCTTAATCAATTTGGTCGACATTATTAGCATAGGAATATGGCTCAACAATTAGATTAATT
1 TTCTTAATCAATTTGGTCAACATTACCAGCATAGGAATATAGCTCAACAATTAGATTAATT
98914135 GCTCGAAAGA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.38
Consensus pattern (64 bp):
TTCTTAATCAATTTGGTCAACATTACCAGCATAGGAATATAGCTCAACAATTAGATTAATTTAA
Found at i:98914799 original size:30 final size:30
Alignment explanation
Indices: 98914763--98914875 Score: 181
Period size: 30 Copynumber: 3.8 Consensus size: 30
98914753 TTTTCTCAAT
*
98914763 TAGCCACTCCTTTTCCACCACCAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCAC
98914793 TAGCCACACCTTTTCCACCACCAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCAC
* * *
98914823 TAGCCACTCTTTTTCCACCACTAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCAC
*
98914853 TAGCCACACCTTCTCCACCACCA
1 TAGCCACACCTTTTCCACCACCA
98914876 CTTGTACCTA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 75 1.00
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.23
Consensus pattern (30 bp):
TAGCCACACCTTTTCCACCACCAACTCCAC
Found at i:98915485 original size:25 final size:25
Alignment explanation
Indices: 98915361--98915578 Score: 100
Period size: 25 Copynumber: 8.9 Consensus size: 25
98915351 TCCTTTTTGT
*
98915361 TATTAT-TATTATATTTCTTAATATTA
1 TATTATGTA-TATATTT-TTAATACTA
*
98915387 TATTA--TATATATTCTTT--TAATA
1 TATTATGTATATATT-TTTAATACTA
* * * *
98915409 TATTA-G-GTACATTTTAAATTCTA
1 TATTATGTATATATTTTTAATACTA
* *
98915432 TATTACGTATATA-TATT-ATACTA
1 TATTATGTATATATTTTTAATACTA
* * *
98915455 TTTTATGTATATATCTTTAATATTATA
1 TATTATGTATATATTTTTAATA--CTA
* **
98915482 TTATTTATATATATATTTTTACATGTTA
1 -TA-TTATGTATATATTTTTA-ATACTA
* *
98915510 TCTTATGTATATA-TCTT-A-ACTA
1 TATTATGTATATATTTTTAATACTA
* **
98915532 TATTATGTATGTATTTTTAGCACTA
1 TATTATGTATATATTTTTAATACTA
*
98915557 TATTATGTACATATTTTTAATA
1 TATTATGTATATATTTTTAATA
98915579 TTATCACGTA
Statistics
Matches: 142, Mismatches: 34, Indels: 33
0.68 0.16 0.16
Matches are distributed among these distances:
21 2 0.01
22 27 0.19
23 28 0.20
24 13 0.09
25 34 0.24
26 15 0.11
27 3 0.02
28 3 0.02
29 15 0.11
30 2 0.01
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (25 bp):
TATTATGTATATATTTTTAATACTA
Found at i:98915523 original size:30 final size:29
Alignment explanation
Indices: 98915444--98915523 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 29
98915434 TTACGTATAT
* * *
98915444 ATATTATACTATTTTATGTATATATCTTTA
1 ATATTATATTA-TGTATATATATATCTTTA
* *
98915474 ATATTATATTATTTATATATATATTTTTA
1 ATATTATATTATGTATATATATATCTTTA
* *
98915503 CATGTTATCTTATGTATATAT
1 -ATATTATATTATGTATATAT
98915524 CTTAACTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 16 0.37
30 27 0.63
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (29 bp):
ATATTATATTATGTATATATATATCTTTA
Found at i:98915756 original size:16 final size:15
Alignment explanation
Indices: 98915732--98915779 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
98915722 TAATTATTAT
*
98915732 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
98915748 TATTTTAATATTTTA
1 TATTTTAATATTTTA
98915763 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
98915779 T
1 T
98915780 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:98915767 original size:7 final size:8
Alignment explanation
Indices: 98915732--98915783 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
98915722 TAATTATTAT
*
98915732 TATTCTAA
1 TATTTTAA
*
98915740 TATTTTGA
1 TATTTTAA
98915748 TATTTTAA
1 TATTTTAA
98915756 TATTTT-A
1 TATTTTAA
98915763 TATTTTATA
1 TATTTTA-A
*
98915772 TATTTTAT
1 TATTTTAA
98915780 TATT
1 TATT
98915784 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:98916982 original size:236 final size:236
Alignment explanation
Indices: 98916561--98917355 Score: 1235
Period size: 236 Copynumber: 3.4 Consensus size: 236
98916551 ATTGCATGAT
*
98916561 TGAAACCAAATATCATGATTAAACACCATTTTTTATAGATAAAAATCAGGAACAATTACAACATT
1 TGAAACCAAATATCATGATTAAACACCATTTTTTATAGATAAAAATCAGAAACAATTACAACATT
* ** *
98916626 ATTCTAATATTATCATGCATAAACCGATCATCTAACCCTAAATGCTCCACGATGATTTTCGAGAA
66 ATTCCAATATTATCATGCATAAAATGATCATCTAACCCTAAATGCTCCACGATGATTTCCGAGAA
* * * *
98916691 CTTCATCAAATTGTTCACAACGTGCAGAAATTCCATAACTTTTAATTGGTTCCATCAAGAAAACA
131 CTTCATCAAATTGTTTACAACGTGCAAAAATTCCATAACTTTTAACTGATTCCATCAAGAAAACA
*
98916756 AATGGGTAGCAGTAATAAACAAACCCTTTTTGGTCCTTAAA
196 AATGGGTAGCAGTAATAAACAAACCCTTTTTGGTCCTTGAA
* *
98916797 TGAAACCAAATATCATGATTAAACACCATTTTTTATAGATAAAAATTAGAAATAATTACAACATT
1 TGAAACCAAATATCATGATTAAACACCATTTTTTATAGATAAAAATCAGAAACAATTACAACATT
* *
98916862 ATTCCAATATTATCATGCATAAAATGATCATCTAACCCTAAATGCTCTACGATGATTTCCAAGAA
66 ATTCCAATATTATCATGCATAAAATGATCATCTAACCCTAAATGCTCCACGATGATTTCCGAGAA
* *
98916927 CTTCATCAAATTGTTTATAACGTGCAAAAATTCCATAACTTTTAACTGATTCCATCAAGAAAATA
131 CTTCATCAAATTGTTTACAACGTGCAAAAATTCCATAACTTTTAACTGATTCCATCAAGAAAACA
*
98916992 AATGGGTAGCAGTAATAAACAAACCTTTTTTGGTCCTTGAA
196 AATGGGTAGCAGTAATAAACAAACCCTTTTTGGTCCTTGAA
98917033 TGAAACCAAATATCATGATTAAACACCA-TTTTTATAGAT-AAAATCAGAAACAATTACAACATT
1 TGAAACCAAATATCATGATTAAACACCATTTTTTATAGATAAAAATCAGAAACAATTACAACATT
* *
98917096 ATTCCAATATTATCATATGCAT-AAATCAATCATCTAACCCTAAATGCTCCAAGATGATTTCCGA
66 ATTCCAATATTATC--ATGCATAAAAT-GATCATCTAACCCTAAATGCTCCACGATGATTTCCGA
*
98917160 GAACTTCATCAAATTGTTTACAACGTGCAAAAATTCCATAACTTTTAACTGATTCCATCCAGAAA
128 GAACTTCATCAAATTGTTTACAACGTGCAAAAATTCCATAACTTTTAACTGATTCCATCAAGAAA
* *
98917225 AC-AATGGGTAGCAGTAACT-AACAAA-CCTATTTTGGTCATTGAC
193 ACAAATGGGTAGCAGTAA-TAAACAAACCCT-TTTTGGTCCTTGAA
* *
98917268 TGAAACTAAATATCATGATTAAACACCATTTTTTATAGATAAAAA-CTGGAAACAATTACAACAT
1 TGAAACCAAATATCATGATTAAACACCATTTTTTATAGATAAAAATC-AGAAACAATTACAACAT
* * * *
98917332 TATCCCAGTATCATCATGTATAAA
65 TATTCCAATATTATCATGCATAAA
98917356 TCAATTATCT
Statistics
Matches: 515, Mismatches: 35, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
234 38 0.07
235 80 0.16
236 365 0.71
237 32 0.06
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (236 bp):
TGAAACCAAATATCATGATTAAACACCATTTTTTATAGATAAAAATCAGAAACAATTACAACATT
ATTCCAATATTATCATGCATAAAATGATCATCTAACCCTAAATGCTCCACGATGATTTCCGAGAA
CTTCATCAAATTGTTTACAACGTGCAAAAATTCCATAACTTTTAACTGATTCCATCAAGAAAACA
AATGGGTAGCAGTAATAAACAAACCCTTTTTGGTCCTTGAA
Found at i:98917893 original size:4 final size:4
Alignment explanation
Indices: 98917886--98917938 Score: 61
Period size: 4 Copynumber: 12.5 Consensus size: 4
98917876 TCCCTAACCG
* *
98917886 AATT AATTT AATT AATT AACT AATT AACTA AATTT AATT AATT AATT AATT
1 AATT AA-TT AATT AATT AATT AATT AA-TT AA-TT AATT AATT AATT AATT
98917937 AA
1 AA
98917939 ATTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
4 32 0.76
5 10 0.24
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (4 bp):
AATT
Found at i:98917922 original size:22 final size:22
Alignment explanation
Indices: 98917897--98917946 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
98917887 ATTAATTTAA
98917897 TTAATTAACTAATTAACTAAAT
1 TTAATTAACTAATTAACTAAAT
* *
98917919 TTAATTAATTAATTAATTAAAT
1 TTAATTAACTAATTAACTAAAT
98917941 TTAATT
1 TTAATT
98917947 TTACTCGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TTAATTAACTAATTAACTAAAT
Found at i:98922933 original size:59 final size:58
Alignment explanation
Indices: 98922753--98922938 Score: 146
Period size: 59 Copynumber: 3.1 Consensus size: 58
98922743 ATGATAAATT
* ** * *
98922753 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
98922812 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
98922873 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
98922932 ATATATT
1 ATATATT
98922939 ATGATTTGAG
Statistics
Matches: 94, Mismatches: 21, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
58 12 0.13
59 36 0.38
60 7 0.07
61 28 0.30
62 11 0.12
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:98922960 original size:120 final size:122
Alignment explanation
Indices: 98922746--98923036 Score: 453
Period size: 120 Copynumber: 2.4 Consensus size: 122
98922736 TAGTATGATG
* **
98922746 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
98922811 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
98922867 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* **
98922930 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGGTTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
98922988 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
98923037 ATATGATTAA
Statistics
Matches: 153, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
119 2 0.01
120 105 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:98923015 original size:18 final size:19
Alignment explanation
Indices: 98922980--98923016 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
98922970 GTTATTAAGA
98922980 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
98922999 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
98923017 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:98923246 original size:44 final size:45
Alignment explanation
Indices: 98923181--98923271 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
98923171 ACCTCTATTC
* * *
98923181 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
98923225 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
98923270 CA
1 CA
98923272 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:98923286 original size:17 final size:16
Alignment explanation
Indices: 98923252--98923304 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
98923242 GATTAGCTAT
98923252 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
98923268 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
98923285 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
98923301 TACA
1 TACA
98923305 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:98928761 original size:30 final size:30
Alignment explanation
Indices: 98928705--98928761 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
98928695 ACGGCTATGA
*
98928705 CACACGGGCGTGTGGCCTACCCGTGTGTCT
1 CACACGGGCGTGTGGACTACCCGTGTGTCT
* * *
98928735 CACACGGGTGTGTGGATTACCTGTGTG
1 CACACGGGCGTGTGGACTACCCGTGTG
98928762 GAAGTGTCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.12, C:0.26, G:0.35, T:0.26
Consensus pattern (30 bp):
CACACGGGCGTGTGGACTACCCGTGTGTCT
Found at i:98933856 original size:174 final size:174
Alignment explanation
Indices: 98933553--98933901 Score: 637
Period size: 174 Copynumber: 2.0 Consensus size: 174
98933543 CACAGTTTCT
98933553 TTCCTTGGTTCTGGTTTAAACTCAACTAACCCTTCTTTATCTCGAACAGTAATCGCATAGAGTTG
1 TTCCTTGGTTCTGGTTTAAACTCAACTAACCCTTCTTTATCTCGAACAGTAATCGCATAGAGTTG
* *
98933618 CTCTCTTGGGTTAGTCGTGGTGTTGCTAGGCAAGCTACCTTGTGGTCTTTTTGAGATTAGCTTAG
66 CTCTCTTGGGTTAGTCGTGGTGTTGCTAGGCAAGCTACCTTGTGGTCTTTCTGAGATCAGCTTAG
98933683 CAACCTGACCTATTTGAGTCTCGAGACCTTGGATTGCCGCTTGC
131 CAACCTGACCTATTTGAGTCTCGAGACCTTGGATTGCCGCTTGC
* *
98933727 TTCCTTGGTTCTGGTTTGAACTCAACTAACCCTT-TTTCATCTCGAACAGTAATCGCATGGAGTT
1 TTCCTTGGTTCTGGTTTAAACTCAACTAACCCTTCTTT-ATCTCGAACAGTAATCGCATAGAGTT
*
98933791 GCTCTCTTGGGTTAGTTGTGGTGTTGCTAGGCAAGCTACCTTGTGGTCTTTCTGAGATCAGCTTA
65 GCTCTCTTGGGTTAGTCGTGGTGTTGCTAGGCAAGCTACCTTGTGGTCTTTCTGAGATCAGCTTA
98933856 GCAACCTGACCTATTTGAGTCTCGAGACCTTGGATTGCCGCTTGC
130 GCAACCTGACCTATTTGAGTCTCGAGACCTTGGATTGCCGCTTGC
98933901 T
1 T
98933902 AATTTTTAAG
Statistics
Matches: 169, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
173 3 0.02
174 166 0.98
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (174 bp):
TTCCTTGGTTCTGGTTTAAACTCAACTAACCCTTCTTTATCTCGAACAGTAATCGCATAGAGTTG
CTCTCTTGGGTTAGTCGTGGTGTTGCTAGGCAAGCTACCTTGTGGTCTTTCTGAGATCAGCTTAG
CAACCTGACCTATTTGAGTCTCGAGACCTTGGATTGCCGCTTGC
Found at i:98936699 original size:33 final size:33
Alignment explanation
Indices: 98936631--98936705 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
98936621 TACAGTGGTC
* * * *
98936631 GATACGAGCCGAGAGGAGTGGAGTATGACGATG
1 GATACGGGCAGAGAGGAATGGAGTACGACGATG
* * *
98936664 GATATGGGCAGAGAGGAATGGAGTACGATGGTG
1 GATACGGGCAGAGAGGAATGGAGTACGACGATG
98936697 GATACGGGC
1 GATACGGGC
98936706 CGAAAGGAGC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.29, C:0.11, G:0.44, T:0.16
Consensus pattern (33 bp):
GATACGGGCAGAGAGGAATGGAGTACGACGATG
Found at i:98936721 original size:66 final size:66
Alignment explanation
Indices: 98936561--98936722 Score: 159
Period size: 66 Copynumber: 2.5 Consensus size: 66
98936551 GGAGTTCGGC
* * * * *
98936561 GGTGGATACGGGCTGGGAA-GAGCAGAGTACGGCGGTGGATATAGACTGAGAGAAGTGGAGTACA
1 GGTGGATACGGGC-CGAAAGGAGCAGAGTACGACGATGGATATAGACAGAGAGAAGTGGAGTACA
98936625 GT
65 GT
* * * ** * * *
98936627 GGTCGATACGAGCCGAGAGGAGTGGAGTATGACGATGGATATGGGCAGAGAGGAA-TGGAGTAC-
1 GGTGGATACGGGCCGAAAGGAGCAGAGTACGACGATGGATATAGACAGAGA-GAAGTGGAGTACA
98936690 GAT
65 G-T
98936693 GGTGGATACGGGCCGAAAGGAGCAGAGTAC
1 GGTGGATACGGGCCGAAAGGAGCAGAGTAC
98936723 TGAGGTGATA
Statistics
Matches: 74, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
65 3 0.04
66 68 0.92
67 3 0.04
ACGTcount: A:0.30, C:0.12, G:0.43, T:0.15
Consensus pattern (66 bp):
GGTGGATACGGGCCGAAAGGAGCAGAGTACGACGATGGATATAGACAGAGAGAAGTGGAGTACAG
T
Found at i:98938964 original size:18 final size:19
Alignment explanation
Indices: 98938922--98938966 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
98938912 TCCCATAAAT
* *
98938922 TACTAACAAAATAAATAAC
1 TACTAACAAAACAAAAAAC
98938941 TA-TAACAAAACAAAAAAC
1 TACTAACAAAACAAAAAAC
98938959 -ACTAACAA
1 TACTAACAA
98938967 TTTATAACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 20 0.87
19 2 0.09
ACGTcount: A:0.67, C:0.18, G:0.00, T:0.16
Consensus pattern (19 bp):
TACTAACAAAACAAAAAAC
Found at i:98939109 original size:70 final size:70
Alignment explanation
Indices: 98939025--98939251 Score: 271
Period size: 60 Copynumber: 3.3 Consensus size: 70
98939015 TTTTAAGAAA
*
98939025 TTTACATTACTAAAAACTCACAAAACAAAACAATTTATAATAAATT-CTTAAAAAAAATTATCAA
1 TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTAC-TAAAAAAAATTATCAA
98939089 AATAAT
65 AATAAT
* * *
98939095 TTTACATTAATAAAAACTCATAAAACACAATAATTTATAATAAATTACT-------A--A-CAAA
1 TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAAAAAAAATTATCAAA
98939150 ATAAT
66 ATAAT
*
98939155 TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAACAAAATATTTAAT-
1 TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAA-AAAA-AATT-ATC
*
98939219 AAAATTAT
63 AAAATAAT
98939227 TTTACATTACTAAAAACTCATCAAA
1 TTTACATTACTAAAAACTCA-CAAA
98939252 TACTAAACTA
Statistics
Matches: 133, Mismatches: 9, Indels: 27
0.79 0.05 0.16
Matches are distributed among these distances:
60 55 0.41
61 1 0.01
63 1 0.01
70 43 0.32
71 1 0.01
72 28 0.21
73 4 0.03
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (70 bp):
TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAAAAAAAATTATCAAA
ATAAT
Done.