Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 297 of 344
Found at i:98939119 original size:29 final size:29
Alignment explanation
Indices: 98939086--98939179 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 29
98939076 AAAAAATTAT
98939086 CAAAATAATTTTACATTAATAAAAACTCA
1 CAAAATAATTTTACATTAATAAAAACTCA
* * * *
98939115 TAAAACACAATAATTT--A-TAATAAATTACTAA
1 -CAAA-ATAAT--TTTACATTAATAAA-AACTCA
*
98939146 CAAAATAATTTTACATTACTAAAAACTCA
1 CAAAATAATTTTACATTAATAAAAACTCA
98939175 CAAAA
1 CAAAA
98939180 CACAACAATT
Statistics
Matches: 48, Mismatches: 9, Indels: 15
0.67 0.12 0.21
Matches are distributed among these distances:
27 3 0.06
29 14 0.29
30 19 0.40
31 9 0.19
33 3 0.06
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (29 bp):
CAAAATAATTTTACATTAATAAAAACTCA
Found at i:98939128 original size:34 final size:34
Alignment explanation
Indices: 98939089--98939190 Score: 87
Period size: 34 Copynumber: 3.2 Consensus size: 34
98939079 AAATTATCAA
98939089 AATAATTTTACATTAATAAAAACTCATAAAACAC
1 AATAATTTTACATTAATAAAAACTCATAAAACAC
* *
98939123 AATAA-TTT--A-TAAT--AAA-T--TACTAACAA
1 AATAATTTTACATTAATAAAAACTCATA-AAACAC
* *
98939149 AATAATTTTACATTACTAAAAACTCACAAAACAC
1 AATAATTTTACATTAATAAAAACTCATAAAACAC
*
98939183 AACAATTT
1 AATAATTT
98939191 ATAATAAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 20
0.65 0.09 0.26
Matches are distributed among these distances:
25 2 0.04
26 9 0.18
27 4 0.08
28 3 0.06
29 1 0.02
30 7 0.14
31 1 0.02
32 3 0.06
33 4 0.08
34 16 0.31
35 1 0.02
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (34 bp):
AATAATTTTACATTAATAAAAACTCATAAAACAC
Found at i:98939294 original size:130 final size:128
Alignment explanation
Indices: 98939030--98939297 Score: 287
Period size: 130 Copynumber: 2.1 Consensus size: 128
98939020 AGAAATTTAC
98939030 ATTACTAAAAACTCACAAAACAAAACAATTTATAATAAATTCTTAAAAAAAATTATCAAAATAAT
1 ATTACTAAAAACTCACAAAACAAAACAATTTATAATAAATTCTTAAAAAAAATTATCAAAATAAT
** * * ** *
98939095 TTTACATTAATAAAAACTCATAAAACACAATAATTTATAATAAATTACTAACAAAATAATTTTAC
66 TTTACATTAATAAAAACTCATAAAACACAATAATACACAACAAATTACTAAC--AATAATCCTAA
* *
98939160 ATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTAC-TAACAAAATATTTAAT-AAAA
1 ATTACTAAAAACTCACAAAACAAAACAATTTATAATAAATT-CTTAA-AAAA-AATT-ATCAAAA
* * * *
98939223 TTATTTTACATTACTAAAAACTCATCAAATACTA-AACTAA-ACACAACAATTTA-TAAC-ATCA
62 TAATTTTACATTAATAAAAACTCAT-AAA-AC-ACAA-TAATACACAACAAATTACTAACAATAA
98939284 TCCTAA
123 TCCTAA
98939290 ATTACTAA
1 ATTACTAA
98939298 TAAATTAATT
Statistics
Matches: 117, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
130 57 0.49
131 5 0.04
132 30 0.26
133 9 0.08
134 12 0.10
135 4 0.03
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (128 bp):
ATTACTAAAAACTCACAAAACAAAACAATTTATAATAAATTCTTAAAAAAAATTATCAAAATAAT
TTTACATTAATAAAAACTCATAAAACACAATAATACACAACAAATTACTAACAATAATCCTAA
Found at i:98939308 original size:34 final size:33
Alignment explanation
Indices: 98939270--98939368 Score: 88
Period size: 34 Copynumber: 3.2 Consensus size: 33
98939260 TAAACACAAC
*
98939270 AATTTATAACATCATCCTAAATTACTAATAAATT
1 AATTTATAACAT-ATCCTAAATTACTAACAAATT
* *
98939304 AATTT-TAA-A-A---T-AATTACAAACACAA-C
1 AATTTATAACATATCCTAAATTACTAACA-AATT
98939330 AATTTATAACATAATCCTAAATTACTAACAAATT
1 AATTTATAACAT-ATCCTAAATTACTAACAAATT
98939364 AATTT
1 AATTT
98939369 TAAAATAATT
Statistics
Matches: 50, Mismatches: 5, Indels: 20
0.67 0.07 0.27
Matches are distributed among these distances:
26 14 0.28
27 6 0.12
28 1 0.02
30 2 0.04
32 1 0.02
33 6 0.12
34 20 0.40
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (33 bp):
AATTTATAACATATCCTAAATTACTAACAAATT
Found at i:98939328 original size:60 final size:60
Alignment explanation
Indices: 98939261--98939379 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
98939251 ATACTAAACT
* *
98939261 AAACACAACAATTTATAACATCATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
98939321 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
98939380 TAAAAAATAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (60 bp):
AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:98939844 original size:25 final size:22
Alignment explanation
Indices: 98939816--98939875 Score: 57
Period size: 25 Copynumber: 2.5 Consensus size: 22
98939806 ATTTAAATGT
98939816 TTTTAATAAAAATAAAATAATAATA
1 TTTTAATAAAAAT-AAA-AAT-ATA
* * *
98939841 TTTTATTTAAAGTAAAAATATA
1 TTTTAATAAAAATAAAAATATA
98939863 TTTTAATATAAAA
1 TTTTAATA-AAAA
98939876 AAGTGGTTGT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
22 9 0.32
23 6 0.21
24 3 0.11
25 10 0.36
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
TTTTAATAAAAATAAAAATATA
Found at i:98948498 original size:45 final size:45
Alignment explanation
Indices: 98948446--98948881 Score: 347
Period size: 45 Copynumber: 9.7 Consensus size: 45
98948436 GTGGCTTCGA
* *
98948446 TCTGCTCCACTGCAACTTCAGGGAGGTAAGATCTGCTAACTCCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAG
*
98948491 TCTGCTCCACTGCAACTTCAGGGAGATGAGATCTGCTAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAG
* * * * *
98948536 TCTACTCCAGTGCAACTTTAGGGAGATGAGA-CTTGGGTGATA-TT-A-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-T-GCT-A-ACTTCAG
* * * * ** **
98948581 TCCTGCTCTACTGTAAGTTTAGAAAGATAAGGAT-TG-TGGCTTC-G
1 T-CTGCTCCACTGCAACTTCAGGGAGATAA-GATCTGCTAACTTCAG
* *
98948625 ATCTGCTCCTCTGCAACTTCAGGGATATAAGATCTGCTAACTTCAG
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAG
* * * * * * *
98948671 TTTGCTTCATTGCAACTTCAAGAAGATGAGATCTGCTAACTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAG
* * * * *
98948716 TCTGCTCCACTGCAACTTCAGGGATATGAGA-CTTGGCTGATTTTA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-T-GCTAACTTCAG
* ** **
98948761 TCCTGCTCTACTGCAACTTCAGAAAGATAAGGAT-TG-TGGCTTC-G
1 T-CTGCTCCACTGCAACTTCAGGGAGATAA-GATCTGCTAACTTCAG
*
98948805 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGCTAACTTCAG
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAG
*
98948851 TCTGCTCCACTGCAACTTCAAGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
98948882 CTTGGGTAAT
Statistics
Matches: 309, Mismatches: 58, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
43 8 0.03
44 57 0.18
45 178 0.58
46 58 0.19
47 7 0.02
48 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAG
Found at i:98948687 original size:180 final size:180
Alignment explanation
Indices: 98948360--98948877 Score: 763
Period size: 180 Copynumber: 2.9 Consensus size: 180
98948350 ATTGTAATTG
* * * *
98948360 CTCCACTGCAACTTCAGGGAGAT-ACG-GTTCG-TGTATTTTTATCCTGTTCTACTGTAACTTCA
1 CTCCACTGCAACTTCAGGGAGATGA-GACTTGGCTG-A-TATTATCCTGCTCTACTGTAACTTCA
* *
98948422 GAGAGATAAGGATTGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGGTAAGATCTGCTAACT
63 GAAAGATAAGGATTGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACT
* *
98948487 CCAGTCTGCTCCACTGCAACTTCAGGGAGATGAGATCTGCTAACTTCAGTCTA
128 TCAGTCTGCTCCACTGCAACTTCAAGGAGATGAGATCTGCTAACTTCAGTCTA
* * * * *
98948540 CTCCAGTGCAACTTTAGGGAGATGAGACTTGGGTGATATTATCCTGCTCTACTGTAAGTTTAGAA
1 CTCCACTGCAACTTCAGGGAGATGAGACTTGGCTGATATTATCCTGCTCTACTGTAACTTCAGAA
* *
98948605 AGATAAGGATTGTGGCTTCGATCTGCTCCTCTGCAACTTCAGGGATATAAGATCTGCTAACTTCA
66 AGATAAGGATTGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCA
* * * * * *
98948670 GTTTGCTTCATTGCAACTTCAAGAAGATGAGATCTGCTAACTTTAGTCTG
131 GTCTGCTCCACTGCAACTTCAAGGAGATGAGATCTGCTAACTTCAGTCTA
* * *
98948720 CTCCACTGCAACTTCAGGGATATGAGACTTGGCTGATTTTATCCTGCTCTACTGCAACTTCAGAA
1 CTCCACTGCAACTTCAGGGAGATGAGACTTGGCTGATATTATCCTGCTCTACTGTAACTTCAGAA
*
98948785 AGATAAGGATTGTGGCTTCGATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGCTAACTTCA
66 AGATAAGGATTGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCA
98948850 GTCTGCTCCACTGCAACTTCAAGGAGAT
131 GTCTGCTCCACTGCAACTTCAAGGAGAT
98948878 AAGACTTGGG
Statistics
Matches: 300, Mismatches: 35, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
180 293 0.98
181 5 0.02
182 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (180 bp):
CTCCACTGCAACTTCAGGGAGATGAGACTTGGCTGATATTATCCTGCTCTACTGTAACTTCAGAA
AGATAAGGATTGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACTTCA
GTCTGCTCCACTGCAACTTCAAGGAGATGAGATCTGCTAACTTCAGTCTA
Found at i:98948822 original size:135 final size:134
Alignment explanation
Indices: 98948681--98948950 Score: 398
Period size: 135 Copynumber: 2.0 Consensus size: 134
98948671 TTTGCTTCAT
* * * * *
98948681 TGCAACTTCA-AGAAGATGAGATCTGCTAACTTTAGTCTGCTCCACTGCAACTTCAGGGATATGA
1 TGCAACTTCAGAG-AGATAAGATCTGCTAACTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAA
* * * * **
98948745 GACTTGGCTGATTTTATCCTGCTCTACTGCAACTTCAGAAAGATAAGGATTGTGGCTTCGATCTG
65 GACTTGGCTAATTTTATCCTGCTCTACTACAACTTCAGAAAGAT-AGGATAGTAGCTTAAATCTG
98948810 CTCCAC
129 CTCCAC
98948816 TGCAACTTCAGAGAGATAAGATCTGCTAACTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATCTGCTAACTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAG
* *
98948881 ACTTGGGTAATTTTATCCTGCTCTACTACAACTTCAGAGAGATAGGATAGTAGCTTAAATCTGCT
66 ACTTGGCTAATTTTATCCTGCTCTACTACAACTTCAGAAAGATAGGATAGTAGCTTAAATCTGCT
98948946 CCAC
131 CCAC
98948950 T
1 T
98948951 ACTGGTTAAG
Statistics
Matches: 121, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
134 23 0.19
135 96 0.79
136 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (134 bp):
TGCAACTTCAGAGAGATAAGATCTGCTAACTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAG
ACTTGGCTAATTTTATCCTGCTCTACTACAACTTCAGAAAGATAGGATAGTAGCTTAAATCTGCT
CCAC
Found at i:98948923 original size:46 final size:44
Alignment explanation
Indices: 98948358--98948924 Score: 241
Period size: 45 Copynumber: 12.6 Consensus size: 44
98948348 CTATTGTAAT
* * * *
98948358 TGCTCCACTGCAACTTCAGGGAGATACGGTTCGTG-TATTTTTATCC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATT-G-GCTAATTTTAT-C
* * * **
98948404 TGTTCTACTGTAACTTCAGAGAGATAAGGATTGTGGC---TTCGATC
1 TGCTCCACTGCAACTTCAGAGAGATAA-GA-T-TGGCTAATTTTATC
* * * **
98948448 TGCTCCACTGCAACTTCAGGGAGGTAAGATCT-GCTAACTCCAGTC
1 TGCTCCACTGCAACTTCAGAGAGATAAGAT-TGGCTAATTTTA-TC
* * * *
98948493 TGCTCCACTGCAACTTCAGGGAGATGAGATCT-GCTAACTTCAGTC
1 TGCTCCACTGCAACTTCAGAGAGATAAGAT-TGGCTAATTTTA-TC
* * * * * * * *
98948538 TACTCCAGTGCAACTTTAGGGAGATGAGACTTGGGTGATATTATCC
1 TGCTCCACTGCAACTTCAGAGAGATAAGA-TTGGCTAATTTTAT-C
* * * * * **
98948584 TGCTCTACTGTAAGTTTAGAAAGATAAGGATTGTGGC---TTCGATC
1 TGCTCCACTGCAACTTCAGAGAGATAA-GA-T-TGGCTAATTTTATC
* * * * * *
98948628 TGCTCCTCTGCAACTTCAGGGATATAAGATCT-GCTAACTTCAGTT
1 TGCTCCACTGCAACTTCAGAGAGATAAGAT-TGGCTAATTTTA-TC
* * * *
98948673 TGCTTCATTGCAACTTCA-AGAAGATGAGATCT-GCTAACTTTAGTC
1 TGCTCCACTGCAACTTCAGAG-AGATAAGAT-TGGCTAATTTTA-TC
* * * *
98948718 TGCTCCACTGCAACTTCAGGGATATGAGACTTGGCTGATTTTATCC
1 TGCTCCACTGCAACTTCAGAGAGATAAGA-TTGGCTAATTTTAT-C
* * **
98948764 TGCTCTACTGCAACTTCAGAAAGATAAGGATTGTGGC---TTCGATC
1 TGCTCCACTGCAACTTCAGAGAGATAA-GA-T-TGGCTAATTTTATC
* *
98948808 TGCTCCACTGCAACTTCAGAGAGATAAGATCT-GCTAACTTCAGTC
1 TGCTCCACTGCAACTTCAGAGAGATAAGAT-TGGCTAATTTTA-TC
*
98948853 TGCTCCACTGCAACTTCA-AGGAGATAAGACTTGGGTAATTTTATCC
1 TGCTCCACTGCAACTTCAGA-GAGATAAGA-TTGGCTAATTTTAT-C
* *
98948899 TGCTCTACTACAACTTCAGAGAGATA
1 TGCTCCACTGCAACTTCAGAGAGATA
98948925 GGATAGTAGC
Statistics
Matches: 402, Mismatches: 86, Indels: 66
0.73 0.16 0.12
Matches are distributed among these distances:
41 6 0.01
42 6 0.01
43 6 0.01
44 78 0.19
45 175 0.44
46 112 0.28
47 9 0.02
48 9 0.02
49 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGATTGGCTAATTTTATC
Found at i:98949173 original size:220 final size:220
Alignment explanation
Indices: 98948919--98949371 Score: 692
Period size: 220 Copynumber: 2.1 Consensus size: 220
98948909 CAACTTCAGA
* *
98948919 GAGATAGGATAGTAGCTTAAATCTGCTCCACTACTGGTTA-AGGAGATAAGATTCACCGTCTTCA
1 GAGATAGGATAGTAGCTTAAATATGCTCCACTACTGGTTAGA-GAGACAAGATTCACCGTCTTCA
* * *
98948983 ATCTGTTTCACTGTAACTTCAGGGAGATAAGATCTGCAATTTCTAGCCTGTTACCCTACTGCTTA
65 ATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATTTCTAGCCTGTTACCCTACTGCTTA
* * * ** *
98949048 GGGGGTTAAGGCTTATTGTTTTTTATCTACTCCACTACAACTTCAGGGAGGCAAGATCTGCAATT
130 GGGGGTTAAGGCTCATCGTCTTCGATCTACTCCACTACAACTTCAGGGAGGCAAGATCTACAATT
98949113 TTCAACCTACTCCACTACTGCTTAGG
195 TTCAACCTACTCCACTACTGCTTAGG
* * * *
98949139 GAGATAGGATGGTGGCTTAAATATGCTCCACTACTGGTTAGAGAGACAAGATTCATCGTCTTCGA
1 GAGATAGGATAGTAGCTTAAATATGCTCCACTACTGGTTAGAGAGACAAGATTCACCGTCTTCAA
* * *
98949204 TCTGTTCCACTGCAGCTTCAGGGAGACAAGATCTGTAATTTCTAGCCTGTTGCCCTACTGCTTAG
66 TCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATTTCTAGCCTGTTACCCTACTGCTTAG
* * *
98949269 GGGGTTAAGGCTCATCGTCTTCGATCTGCTCCCCTACAACTTCAGGGAGGCAAGATTTACAATTT
131 GGGGTTAAGGCTCATCGTCTTCGATCTACTCCACTACAACTTCAGGGAGGCAAGATCTACAATTT
98949334 TCAACCTACTCCACTACTGCTTAGG
196 TCAACCTACTCCACTACTGCTTAGG
*
98949359 GTGATAGGATAGT
1 GAGATAGGATAGT
98949372 CAAACCTCAG
Statistics
Matches: 209, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
220 208 1.00
221 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.31
Consensus pattern (220 bp):
GAGATAGGATAGTAGCTTAAATATGCTCCACTACTGGTTAGAGAGACAAGATTCACCGTCTTCAA
TCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATTTCTAGCCTGTTACCCTACTGCTTAG
GGGGTTAAGGCTCATCGTCTTCGATCTACTCCACTACAACTTCAGGGAGGCAAGATCTACAATTT
TCAACCTACTCCACTACTGCTTAGG
Found at i:98949351 original size:89 final size:89
Alignment explanation
Indices: 98949191--98949359 Score: 207
Period size: 89 Copynumber: 1.9 Consensus size: 89
98949181 GAGACAAGAT
* * * ** * **
98949191 TCATCGTCTTCGATCTGTTCCACTGCAGCTTCAGGGAGACAAGATCTGTAATTTCTAGCCTGTTG
1 TCATCGTCTTCGATCTGCTCCACTACAACTTCAGGGAGACAAGATCTACAATTTCTAACCTACTG
98949256 CCCTACTGCTTAGGGGGTTAAGGC
66 CCCTACTGCTTAGGGGGTTAAGGC
* * *
98949280 TCATCGTCTTCGATCTGCTCCCCTACAACTTCAGGGAGGCAAGATTTACAATTT-TCAACCTACT
1 TCATCGTCTTCGATCTGCTCCACTACAACTTCAGGGAGACAAGATCTACAATTTCT-AACCTACT
98949344 -CCACTACTGCTTAGGG
65 GCC-CTACTGCTTAGGG
98949360 TGATAGGATA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
88 3 0.04
89 64 0.96
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (89 bp):
TCATCGTCTTCGATCTGCTCCACTACAACTTCAGGGAGACAAGATCTACAATTTCTAACCTACTG
CCCTACTGCTTAGGGGGTTAAGGC
Found at i:98952963 original size:38 final size:38
Alignment explanation
Indices: 98952921--98952996 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
98952911 GCGTCAACCC
*
98952921 CATAATAGTAGTCAACATTCTCCATTGCCTTAACTTTT
1 CATAATAGTAGTCAACATTCTCCATTGCCTTAAATTTT
98952959 CATAATAGTAGTCAACATTCTCCATTGCCTTAAATTTT
1 CATAATAGTAGTCAACATTCTCCATTGCCTTAAATTTT
98952997 TCCTCCAACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (38 bp):
CATAATAGTAGTCAACATTCTCCATTGCCTTAAATTTT
Found at i:98954075 original size:5 final size:5
Alignment explanation
Indices: 98954067--98954091 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
98954057 ATGCAGTCAT
98954067 AAACA AAACA AAACA AAACA AAACA
1 AAACA AAACA AAACA AAACA AAACA
98954092 CGTTAGTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:98957740 original size:127 final size:125
Alignment explanation
Indices: 98957585--98958143 Score: 515
Period size: 127 Copynumber: 4.4 Consensus size: 125
98957575 TCTCAGCAGA
* * *
98957585 AGGCAATATTTCGTGTTGGGAAGTTTTGAAGGTCATGCCCAATCGTGCTGGGCTTCAATTTTCCA
1 AGGCAATATTTCGTGTTTGGAAGTTTGGAAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
* * * * *
98957650 TTCGGCTAAAATACGGAATATCC-TTTGGAAATTTCGTCCATGCTTTTGAAAAAATTAAAAGG
66 TTCGACTAAAATACGGAATATCCTTTTTGAAATTTCATCCATGCTTTT--TAAAA-TAAAACG
* * * * ***
98957712 AGGCAATATTTCGTATTTAGGGAGTTT-GAGAGATCGTGCCCAATCGTGCTGGGTTTTGTTTTGT
1 AGGCAATATTTCGTGTTT-GGAAGTTTGGA-AGGTCGTGCCCAATCGTGCTGGGCTTCAATTT-T
* * * *
98957776 TCATTCGACT-AAATATGGAATATCCTTTTTTTTAAA-TTCATCCGTG-TTTACTTAAAATAAAA
63 CCATTCGACTAAAATACGGAATATCC--TTTTTGAAATTTCATCCATGCTTT--TTAAAATAAAA
*
98957838 CA
124 CG
*
98957840 AGGCAATATTTCGGGTTTGGAAGTTTGGGAA-GTCGTGCCCAATCGTGCTGGGCTTCAATTTTCC
1 AGGCAATATTTCGTGTTTGGAAGTTT-GGAAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCC
* * * *
98957904 ACTCGACTAAAATATGAAATATCCTTTTTTGAAATTTCATCCACGCTTTCTTAAAATAAAACG
65 ATTCGACTAAAATACGGAATATCC-TTTTTGAAATTTCATCCATGCTTT-TTAAAATAAAACG
* * * * * *
98957967 AGGTAATATTTCGTGCTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCGATTTTTCA
1 AGGCAATATTTCGTGTTTGGAAGTTTGGAAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
* * * ** *
98958032 TTCGACTAAAATACAGAATATCC-TTTTGAAATTCCATTCATG-TTTTCTCAATTTAAAATG
66 TTCGACTAAAATACGGAATATCCTTTTTGAAATTTCATCCATGCTTTT-T-AAAATAAAACG
* * * * * **
98958092 TGGCAATGTTTCGTATTTGGAA-ATTCGATAAATCGTGCCCAATCGTGCTGGG
1 AGGCAATATTTCGTGTTTGGAAGTTTGGA-AGGTCGTGCCCAATCGTGCTGGG
98958144 TTTCGGCTTA
Statistics
Matches: 354, Mismatches: 61, Indels: 36
0.78 0.14 0.08
Matches are distributed among these distances:
123 1 0.00
124 7 0.02
125 62 0.18
126 21 0.06
127 158 0.45
128 72 0.20
129 18 0.05
130 8 0.02
131 7 0.02
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (125 bp):
AGGCAATATTTCGTGTTTGGAAGTTTGGAAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
TTCGACTAAAATACGGAATATCCTTTTTGAAATTTCATCCATGCTTTTTAAAATAAAACG
Found at i:98969387 original size:64 final size:64
Alignment explanation
Indices: 98969286--98969409 Score: 162
Period size: 64 Copynumber: 1.9 Consensus size: 64
98969276 TCATAATACA
* *
98969286 TCTAGCTAGGAGCACTTGATTCATTCTAGTCATAGCATCTTAATTATTTGATATAAGCATCACG
1 TCTAGCTAGGAGCACTTGATTCATTCTAGTCATAGCATCCTAATTATTTGACATAAGCATCACG
* * * *
98969350 TCTAGCTAGGAGCATTTGGATT-ATT-TTGATCATAGCATCCTAGTTATTTGGCATAAGCAT
1 TCTAGCTAGGAGCACTT-GATTCATTCTAG-TCATAGCATCCTAATTATTTGACATAAGCAT
98969410 AGATACATGA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
63 2 0.04
64 46 0.88
65 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (64 bp):
TCTAGCTAGGAGCACTTGATTCATTCTAGTCATAGCATCCTAATTATTTGACATAAGCATCACG
Found at i:98970239 original size:127 final size:128
Alignment explanation
Indices: 98969785--98970258 Score: 501
Period size: 127 Copynumber: 3.8 Consensus size: 128
98969775 GCGCGCCCAA
*
98969785 TCGT-CTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTT-AATTTTCCATTCGGCTA
1 TCGTGCTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGG-TTTCAATTTTCCATTCGACTA
* * * * *
98969848 AAATACGGAATATCC--TTTGGAAATTTCGTCCATGCTTT-TTAAAAAATTAAAAGGAGGCAATA
65 AAATACGGAATATCCTTTTTTGAAATTTCATCCACGCTTTCTT--AAAA-TAAAACGAGGTAATA
98969910 TT
127 TT
* ** * * * ** * *
98969912 TTGTATTTGGGGAGTTTGAGAGATTATGCCCAATCGTGCTGGGTTTCATTTTGTTCATTCGACT-
1 TCGTGCTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTT-TCCATTCGACTA
* *
98969976 AAATATGGAATATCCTTTTTT--TA-TTCAT-C-CGCATTTACTTAAAATAAAACGAGGTAATAT
65 AAATACGGAATATCCTTTTTTGAAATTTCATCCACGC-TTT-CTTAAAATAAAACGAGGTAATAT
98970036 T
128 T
* * * * * *
98970037 TCATG-TTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGTTGGGCTTCAATTTTCCACTCGACTAA
1 TCGTGCTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCGACTAA
*
98970101 AATATGGAATATCCTTTTTTGAAATTTCATCCACGCTTTCTTAAAATAAAACGAGGTAATATT
66 AATACGGAATATCCTTTTTTGAAATTTCATCCACGCTTTCTTAAAATAAAACGAGGTAATATT
* *
98970164 TCGTGCTT-GGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAA
1 TCGTGCTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCGACTAA
** * *
98970228 AATACAAAATAT--TCTTTTGAAATTCCATCCA
66 AATACGGAATATCCTTTTTTGAAATTTCATCCA
98970259 TGTTTTCTCA
Statistics
Matches: 287, Mismatches: 45, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
123 9 0.03
124 57 0.20
125 36 0.13
126 9 0.03
127 102 0.36
128 59 0.21
129 12 0.04
130 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (128 bp):
TCGTGCTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCGACTAA
AATACGGAATATCCTTTTTTGAAATTTCATCCACGCTTTCTTAAAATAAAACGAGGTAATATT
Found at i:98970300 original size:252 final size:251
Alignment explanation
Indices: 98969793--98970330 Score: 564
Period size: 252 Copynumber: 2.1 Consensus size: 251
98969783 AATCGTCTTG
* * * *
98969793 GGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTTAATTTTCCATTCGGCTAAAATACGGAA
1 GGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCACTCGACTAAAATACGGAA
* * * * *
98969858 TATCCTTTGGAAATTTCGTCCATGCTTTTTAAAAAATTAAAAGGAGGCAATATTTTGTATTTGGG
66 TATCCTTTGGAAATTTCATCCACGCTTTTT-AAAAATTAAAACGAGGCAATATTTCGTACTTGGG
* * ***
98969923 GAGTTTGAGAGATTATGCCCAATCGTGCTGGGTTTCATTTTGTTCATTCGACTAAATATGGAATA
130 AAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCATTTTGTTCATTCGACTAAATACAAAATA
*** * * * *
98969988 TCCTTTTTTTATTCATCCGCATTTACTTAAAATAAAACGAGGTAATATTTCATGTTT
195 TCCTTTTGAAATTCATCCACATTTACTCAAAATAAAACGAGGCAATATTTCATATTT
* *
98970045 GGAAGTTTGGGAAGTCGTGCCCAATCGTGTTGGGCTTCAATTTTCCACTCGACTAAAATATGGAA
1 GGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCACTCGACTAAAATACGGAA
* * *
98970110 TATCCTTTTTTGAAATTTCATCCACGCTTTCTT-AAAA-TAAAACGAGGTAATATTTCGTGCTT-
66 TATCC--TTTGGAAATTTCATCCACGCTTT-TTAAAAATTAAAACGAGGCAATATTTCGTACTTG
* * *
98970172 GGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCGA-TTT-TTCATTCGACTAAAATACAA
128 GGAAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTC-ATTTTGTTCATTCGACT-AAATACAA
* ** * ** * * * **
98970235 AATATTCTTTTGAAATTCCATCCATGTTTTCTCAATTTAAAATGTGGCAATGTTTTGTATTT
191 AATATCCTTTTGAAATT-CATCCACATTTACTCAAAATAAAACGAGGCAATATTTCATATTT
* * ** * *
98970297 GGAAATTCGATAAATCGTGCCCAATCATGCTGGG
1 GGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGG
98970331 TTTCGGTTTA
Statistics
Matches: 233, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
250 11 0.05
251 54 0.23
252 142 0.61
253 4 0.02
254 20 0.09
255 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (251 bp):
GGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCACTCGACTAAAATACGGAA
TATCCTTTGGAAATTTCATCCACGCTTTTTAAAAATTAAAACGAGGCAATATTTCGTACTTGGGA
AGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCATTTTGTTCATTCGACTAAATACAAAATAT
CCTTTTGAAATTCATCCACATTTACTCAAAATAAAACGAGGCAATATTTCATATTT
Found at i:98972596 original size:16 final size:15
Alignment explanation
Indices: 98972575--98972676 Score: 76
Period size: 15 Copynumber: 6.9 Consensus size: 15
98972565 ATTTTTACTT
98972575 TTATTATATATATTA
1 TTATTATATATATTA
98972590 CTTATTATAT-TATT-
1 -TTATTATATATATTA
*
98972604 TTTTTAT-TATA-TA
1 TTATTATATATATTA
98972617 TTATGTATATCATA-TA
1 TTAT-TATAT-ATATTA
98972633 TTATT-TATTATATTA
1 TTATTATA-TATATTA
*
98972648 TT-TATATTTATATTA
1 TTAT-TATATATATTA
98972663 TTCATTATAT-TATT
1 TT-ATTATATATATT
98972677 TATAATTTTA
Statistics
Matches: 71, Mismatches: 4, Indels: 23
0.72 0.04 0.23
Matches are distributed among these distances:
12 2 0.03
13 11 0.15
14 9 0.13
15 25 0.35
16 23 0.32
17 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (15 bp):
TTATTATATATATTA
Found at i:98972617 original size:30 final size:30
Alignment explanation
Indices: 98972532--98972619 Score: 90
Period size: 33 Copynumber: 2.9 Consensus size: 30
98972522 CTATATATAT
* ** *
98972532 TTATA-TTGTATTTTATTATATAGCATTTA
1 TTATATTTTTATTTTATTATATATTACTTA
98972561 TTATATTTTTACTTTTATTATATATATTACTTA
1 TTATATTTTTA-TTTTA-T-TATATATTACTTA
98972594 TTATATTATTT-TTTTATTATATATTA
1 TTATATT-TTTATTTTATTATATATTA
98972620 TGTATATCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
29 5 0.10
30 13 0.26
31 6 0.12
32 6 0.12
33 17 0.34
34 3 0.06
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (30 bp):
TTATATTTTTATTTTATTATATATTACTTA
Found at i:98972618 original size:18 final size:19
Alignment explanation
Indices: 98972535--98972675 Score: 72
Period size: 19 Copynumber: 7.8 Consensus size: 19
98972525 TATATATTTA
* *
98972535 TATTGTATTTTATTATATAG
1 TATT-TATTATATTATATAT
* * *
98972555 CATTTATTATATT-TTTAC
1 TATTTATTATATTATATAT
98972573 T-TTTA-T-TA-TATATAT
1 TATTTATTATATTATATAT
*
98972588 TACTTATTATATTAT-T-T
1 TATTTATTATATTATATAT
98972605 T-TTTATTATA-TAT-TAT
1 TATTTATTATATTATATAT
* *
98972621 GTATATCA-TATATTATTTAT
1 -TAT-TTATTATATTATATAT
98972641 TATATTATTTATATT-TATAT
1 TAT-TTA-TTATATTATATAT
*
98972661 TATTCATTATATTAT
1 TATTTATTATATTAT
98972676 TTATAATTTT
Statistics
Matches: 94, Mismatches: 13, Indels: 29
0.69 0.10 0.21
Matches are distributed among these distances:
14 1 0.01
15 10 0.11
16 13 0.14
17 8 0.09
18 18 0.19
19 25 0.27
20 13 0.14
21 6 0.06
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTTATTATATTATATAT
Found at i:98972625 original size:11 final size:10
Alignment explanation
Indices: 98972576--98972680 Score: 60
Period size: 12 Copynumber: 10.2 Consensus size: 10
98972566 TTTTTACTTT
98972576 TATTA-TATA
1 TATTATTATA
98972585 TATTACTTATTA
1 TATTA-TTA-TA
98972597 TATTATT-T-
1 TATTATTATA
*
98972605 TTTTATTATA
1 TATTATTATA
98972615 TATTATGTATA
1 TATTAT-TATA
*
98972626 TCATATATTATT
1 T-AT-TATTATA
98972638 TATTA-TAT-
1 TATTATTATA
*
98972646 TATTTATATTTA
1 TA-TTAT-TATA
98972658 TATTATTCATTA
1 TATTATT-A-TA
98972670 TATTATT-TA
1 TATTATTATA
98972679 TA
1 TA
98972681 ATTTTAAGAT
Statistics
Matches: 77, Mismatches: 5, Indels: 28
0.70 0.05 0.25
Matches are distributed among these distances:
8 8 0.10
9 17 0.22
10 8 0.10
11 17 0.22
12 24 0.31
13 3 0.04
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (10 bp):
TATTATTATA
Found at i:98972640 original size:27 final size:27
Alignment explanation
Indices: 98972578--98972680 Score: 100
Period size: 27 Copynumber: 3.6 Consensus size: 27
98972568 TTTACTTTTA
* *
98972578 TTATATATATTACTTAT-TATATTATTTTT
1 TTAT-TATATTATTTATATATA-TA-TTAT
*
98972607 TTATTATATATTATGTATATCATATATTAT
1 TTA-T-TATATTATTTATAT-ATATATTAT
*
98972637 TTATTATATTATTTATATTTATATTAT
1 TTATTATATTATTTATATATATATTAT
*
98972664 TCATTATATTATTTATA
1 TTATTATATTATTTATA
98972681 ATTTTAAGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
27 24 0.37
28 13 0.20
29 4 0.06
30 18 0.28
31 3 0.05
32 3 0.05
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (27 bp):
TTATTATATTATTTATATATATATTAT
Found at i:98972652 original size:9 final size:9
Alignment explanation
Indices: 98972594--98972680 Score: 58
Period size: 9 Copynumber: 9.6 Consensus size: 9
98972584 ATATTACTTA
98972594 TTATATTAT
1 TTATATTAT
*
98972603 TT-TTTTAT
1 TTATATTAT
98972611 TATATATTAT
1 T-TATATTAT
*
98972621 GTATATCATAT
1 TTATAT--TAT
98972632 ATTAT-TTA-
1 -TTATATTAT
98972640 TTATATTAT
1 TTATATTAT
98972649 TTATATTTAT
1 TTATA-TTAT
*
98972659 ATTAT-TCA-
1 -TTATATTAT
98972667 TTATATTAT
1 TTATATTAT
98972676 TTATA
1 TTATA
98972681 ATTTTAAGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 22
0.69 0.07 0.25
Matches are distributed among these distances:
7 8 0.13
8 11 0.18
9 22 0.36
10 9 0.15
11 8 0.13
12 3 0.05
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.63
Consensus pattern (9 bp):
TTATATTAT
Found at i:98972672 original size:39 final size:39
Alignment explanation
Indices: 98972574--98972679 Score: 109
Period size: 39 Copynumber: 2.8 Consensus size: 39
98972564 TATTTTTACT
* *
98972574 TTTATTATATATATTACTT-ATTATATTATTT-TTTTATTA
1 TTTA-TATTTATATTA-TTCATTATATTATTTATTATATTA
*
98972613 --TATA-TTAT-GTATATCA-TATATTATTTATTATATTA
1 TTTATATTTATATTAT-TCATTATATTATTTATTATATTA
98972648 TTTATATTTATATTATTCATTATATTATTTAT
1 TTTATATTTATATTATTCATTATATTATTTAT
98972680 AATTTTAAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
33 1 0.02
34 13 0.24
35 11 0.20
36 2 0.04
37 6 0.11
38 7 0.13
39 15 0.27
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (39 bp):
TTTATATTTATATTATTCATTATATTATTTATTATATTA
Found at i:98976704 original size:15 final size:15
Alignment explanation
Indices: 98976670--98976717 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
98976660 ATATTCTTTA
98976670 TGCAT-TCATGCATT
1 TGCATCTCATGCATT
98976684 TGCATCTCATGGCATT
1 TGCATCTCAT-GCATT
*
98976700 T-CATCACAT-CATT
1 TGCATCTCATGCATT
98976713 TGCAT
1 TGCAT
98976718 TTAAAGTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 11 0.37
16 6 0.20
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (15 bp):
TGCATCTCATGCATT
Found at i:98984939 original size:119 final size:119
Alignment explanation
Indices: 98984728--98985202 Score: 682
Period size: 119 Copynumber: 4.0 Consensus size: 119
98984718 TAGGCCGCAG
* *
98984728 TATAGCAGATCTAGCTTTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTTTTGTG
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* * * *
98984793 TTTACAAGGAACAAATCGGGGACATAGCAGATTTGACTCTCAGACGTTCCCAGA
66 GTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGA
*
98984847 TATAGCAGATCTAACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* * * *
98984912 GTTACAAGGAGCAAATCGAGGACATAGCAGATTTAACTCTCAAATGTTCTCAAA
66 GTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGA
*
98984966 TATAGCAGATCTAGCTTTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT-
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* * *
98985030 GTTCACAAGGAACAAACCGAGGACATAGCAGATTTGACTCTCAGATGTTATTAGA
66 GTT-ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGA
* * * * *** *
98985085 CATGGCAGATCTAGCGTTCAGAGGTTTATACTGAAGCAAGATCCAAGATGATTTAACATTCTTAT
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGC-AGATCCAAGATGATTTGGTATTCTTGT
* * * *
98985150 GTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTTAGATGTTCTCA
65 GGTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA
98985203 AACAGACTCA
Statistics
Matches: 317, Mismatches: 36, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
118 3 0.01
119 246 0.78
120 66 0.21
121 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (119 bp):
TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
GTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGA
Found at i:98987102 original size:27 final size:27
Alignment explanation
Indices: 98987040--98987142 Score: 91
Period size: 27 Copynumber: 3.6 Consensus size: 27
98987030 TTTACTTTTA
* *
98987040 TTATATATATTACTTACTATAT-TATTTTT
1 TTAT-TATATTATTTA-TATATATA-TTAT
*
98987069 TTATTATATATTATGTATATCATATATTAT
1 TTA-T-TATATTATTTATAT-ATATATTAT
* *
98987099 TTATTATATTATTTATGTTTATATTAT
1 TTATTATATTATTTATATATATATTAT
*
98987126 TCATTATATTATTTATA
1 TTATTATATTATTTATA
98987143 ATTTTAAGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
27 23 0.37
28 12 0.19
29 7 0.11
30 19 0.30
31 2 0.03
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (27 bp):
TTATTATATTATTTATATATATATTAT
Found at i:98987120 original size:15 final size:12
Alignment explanation
Indices: 98987018--98987141 Score: 82
Period size: 12 Copynumber: 10.5 Consensus size: 12
98987008 ATTATATAGC
98987018 ATTTATTATATT
1 ATTTATTATATT
*
98987030 -TTTACT-T-TT
1 ATTTATTATATT
98987039 A-TTATATATATT
1 ATTTAT-TATATT
* *
98987051 ACTTACTATATT
1 ATTTATTATATT
*
98987063 ATTT-TTTTATT
1 ATTTATTATATT
* *
98987074 ATATATTAT-GT
1 ATTTATTATATT
*
98987085 ATATCA-TATATT
1 AT-TTATTATATT
98987097 ATTTATTATATT
1 ATTTATTATATT
98987109 ATTTATGTTTATATT
1 ATTTA---TTATATT
*
98987124 ATTCATTATATT
1 ATTTATTATATT
98987136 ATTTAT
1 ATTTAT
98987142 AATTTTAAGA
Statistics
Matches: 85, Mismatches: 15, Indels: 24
0.69 0.12 0.19
Matches are distributed among these distances:
9 5 0.06
10 2 0.02
11 22 0.26
12 42 0.49
13 3 0.04
15 11 0.13
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (12 bp):
ATTTATTATATT
Found at i:98991164 original size:21 final size:20
Alignment explanation
Indices: 98991135--98991174 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
98991125 AGAGTCATTG
* *
98991135 ATAACTTGTTGAAATAAATAA
1 ATAAATTGTT-AAAAAAATAA
98991156 ATAAATTGTTAAAAAAATA
1 ATAAATTGTTAAAAAAATA
98991175 TTTTTATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (20 bp):
ATAAATTGTTAAAAAAATAA
Found at i:98996135 original size:29 final size:29
Alignment explanation
Indices: 98996093--98996148 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
98996083 ACGGCCTAGA
98996093 CACACGCCCATGTCCTTGCCCGTGTGGCT
1 CACACGCCCATGTCCTTGCCCGTGTGGCT
* *
98996122 CACACGTCCATGTCCTTGGCCGTGTGG
1 CACACGCCCATGTCCTTGCCCGTGTGG
98996149 TTCTAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.11, C:0.38, G:0.27, T:0.25
Consensus pattern (29 bp):
CACACGCCCATGTCCTTGCCCGTGTGGCT
Found at i:99011846 original size:14 final size:15
Alignment explanation
Indices: 99011827--99011860 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
99011817 TTGAATAGTC
99011827 AAATTCAATGAAA-A
1 AAATTCAATGAAACA
*
99011841 AAATTCAATTAAACA
1 AAATTCAATGAAACA
99011856 AAATT
1 AAATT
99011861 AAAAAGGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.26
Consensus pattern (15 bp):
AAATTCAATGAAACA
Found at i:99026661 original size:12 final size:13
Alignment explanation
Indices: 99026627--99026668 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
99026617 GGTAGGATTT
*
99026627 TGTATTTCTGATC
1 TGTATATCTGATC
*
99026640 TGTATATCTGTTC
1 TGTATATCTGATC
99026653 TGT-TATCTGATC
1 TGTATATCTGATC
99026665 TGTA
1 TGTA
99026669 AAGGGCTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.52
Consensus pattern (13 bp):
TGTATATCTGATC
Found at i:99027373 original size:11 final size:11
Alignment explanation
Indices: 99027353--99027386 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
99027343 TAGAGGCACA
99027353 TGGCCGTGTGG
1 TGGCCGTGTGG
*
99027364 TGGCCTTGTGG
1 TGGCCGTGTGG
*
99027375 TGGCGGTGTGG
1 TGGCCGTGTGG
99027386 T
1 T
99027387 CCACATGCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.53, T:0.32
Consensus pattern (11 bp):
TGGCCGTGTGG
Found at i:99031369 original size:18 final size:17
Alignment explanation
Indices: 99031346--99031389 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
99031336 CACACGGGCT
99031346 GGCCATTTAGGCCGTGTG
1 GGCCATTT-GGCCGTGTG
* *
99031364 GGCCATATGGCTGTGTG
1 GGCCATTTGGCCGTGTG
99031381 GGCCTATTT
1 GGCC-ATTT
99031390 TTAAGAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.11, C:0.20, G:0.36, T:0.32
Consensus pattern (17 bp):
GGCCATTTGGCCGTGTG
Found at i:99032110 original size:27 final size:27
Alignment explanation
Indices: 99032058--99032110 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
99032048 GATCTGACAA
*
99032058 ATGATTCTTGATATATGACATTCTAAT
1 ATGATTCTTGATATATGACATACTAAT
* *
99032085 ATGATTTTTGCATATGTGA-ATACTAA
1 ATGATTCTTG-ATATATGACATACTAA
99032111 AAGCAAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.43
Consensus pattern (27 bp):
ATGATTCTTGATATATGACATACTAAT
Found at i:99036883 original size:26 final size:26
Alignment explanation
Indices: 99036847--99036908 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
99036837 CACTAAAGAG
99036847 TAAAATTTTCCAAAAATGATGGATTT
1 TAAAATTTTCCAAAAATGATGGATTT
99036873 TAAAATTTTCCAAAAATGATGGATTT
1 TAAAATTTTCCAAAAATGATGGATTT
*
99036899 TAAAGTTTTC
1 TAAAATTTTC
99036909 TTAGCAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.40
Consensus pattern (26 bp):
TAAAATTTTCCAAAAATGATGGATTT
Found at i:99038060 original size:17 final size:17
Alignment explanation
Indices: 99038040--99038083 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
99038030 AGTATGGCGT
99038040 AAAGAAAAGGAAAAGAA
1 AAAGAAAAGGAAAAGAA
* *
99038057 AAAGAAAAAGAGAAGAA
1 AAAGAAAAGGAAAAGAA
99038074 ATAA-AAAAGG
1 A-AAGAAAAGG
99038084 TGAAGAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (17 bp):
AAAGAAAAGGAAAAGAA
Found at i:99040684 original size:23 final size:23
Alignment explanation
Indices: 99040642--99040685 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
99040632 AAATACACAA
*
99040642 TTCTTTCTTTCAACTGTTTTATC
1 TTCTTTCTTTCAACTATTTTATC
99040665 TTCTTTC-TTCAACATATTTTA
1 TTCTTTCTTTCAAC-TATTTTA
99040686 AGTTCTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.18, C:0.20, G:0.02, T:0.59
Consensus pattern (23 bp):
TTCTTTCTTTCAACTATTTTATC
Found at i:99040691 original size:23 final size:23
Alignment explanation
Indices: 99040642--99040691 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
99040632 AAATACACAA
* *
99040642 TTCTTTCTTTCAACTGTTTTATC
1 TTCTTTCTTTCAACTATTTTAAC
*
99040665 TTCTTTC-TTCAACATATTTTAAG
1 TTCTTTCTTTCAAC-TATTTTAAC
99040688 TTCT
1 TTCT
99040692 CAAATCTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.18, C:0.20, G:0.04, T:0.58
Consensus pattern (23 bp):
TTCTTTCTTTCAACTATTTTAAC
Found at i:99044075 original size:53 final size:53
Alignment explanation
Indices: 99043993--99044101 Score: 155
Period size: 53 Copynumber: 2.1 Consensus size: 53
99043983 CTGAAGAACT
** *
99043993 ATATCGTGTAAGATTGTAACTAGTGGGTTACGATATCATATGGAAAAAAGACC
1 ATATCGTGTAAGACCGTAACTAGTGGGTTACGACATCATATGGAAAAAAGACC
* * * *
99044046 ATATCGTGTAAGACCGTAACTGGTTGGTTATGACATCATATGGAAATAAGACC
1 ATATCGTGTAAGACCGTAACTAGTGGGTTACGACATCATATGGAAAAAAGACC
99044099 ATA
1 ATA
99044102 ACTGGTGGGT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (53 bp):
ATATCGTGTAAGACCGTAACTAGTGGGTTACGACATCATATGGAAAAAAGACC
Found at i:99044096 original size:38 final size:39
Alignment explanation
Indices: 99044054--99044130 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
99044044 CCATATCGTG
* *
99044054 TAAGACCGTAACTGGTTGGTTATGACATCATA-TGGAAA
1 TAAGACCATAACTGGTGGGTTATGACATCATATTGGAAA
**
99044092 TAAGACCATAACTGGTGGGTTATGGTATCATATTGGAAA
1 TAAGACCATAACTGGTGGGTTATGACATCATATTGGAAA
99044131 ATTTAAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
38 28 0.82
39 6 0.18
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.30
Consensus pattern (39 bp):
TAAGACCATAACTGGTGGGTTATGACATCATATTGGAAA
Found at i:99044330 original size:56 final size:55
Alignment explanation
Indices: 99044253--99044456 Score: 230
Period size: 56 Copynumber: 3.6 Consensus size: 55
99044243 AAGTACAACA
* *
99044253 TTTGTGGAAAAACTCCAGAAAGGTAAGCCTTTGTGGTGAACCTGGTAAAGGACACC
1 TTTGTGGAAAAACT-CTGAAAGGTAAGCCTTTGTGGTGAACCTGTTAAAGGACACC
* *
99044309 TTTGTGGCAAAACTCTGGAAAGGTAAGCGTTTGTGGTGAACCTGTTAAAGGACAACC
1 TTTGTGGAAAAACTCT-GAAAGGTAAGCCTTTGTGGTGAACCTGTTAAAGGAC-ACC
* ** * **
99044366 TTTGTGGAAAAACTCTTGAAAGGTAAGGCTTCAT-GTCGAACCTATTAAAGGATGCC
1 TTTGTGGAAAAACTC-TGAAAGGTAAGCCTTTGTGGT-GAACCTGTTAAAGGACACC
** * *
99044422 TTTGTGGTGAAACTCTGAATGGAAAGCCTTTGTGG
1 TTTGTGGAAAAACTCTGAAAGGTAAGCCTTTGTGG
99044457 CGAGTACTTA
Statistics
Matches: 124, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
55 14 0.11
56 65 0.52
57 44 0.35
58 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (55 bp):
TTTGTGGAAAAACTCTGAAAGGTAAGCCTTTGTGGTGAACCTGTTAAAGGACACC
Found at i:99044342 original size:29 final size:28
Alignment explanation
Indices: 99044253--99044392 Score: 92
Period size: 28 Copynumber: 4.9 Consensus size: 28
99044243 AAGTACAACA
**
99044253 TTTGTGGAAAAACTCCAGAAAGGTAAGCC
1 TTTGTGG-AAAACTCTGGAAAGGTAAGCC
**
99044282 TTTGTGGTGAAC-CTGGTAAAGG-ACA-CC
1 TTTGTGGAAAACTCTGG-AAAGGTA-AGCC
*
99044309 TTTGTGGCAAAACTCTGGAAAGGTAAGCG
1 TTTGTGG-AAAACTCTGGAAAGGTAAGCC
** * *
99044338 TTTGTGGTGAAC-CTGTTAAAGG-ACAACC
1 TTTGTGGAAAACTCTG-GAAAGGTA-AGCC
*
99044366 TTTGTGGAAAAACTCTTGAAAGGTAAG
1 TTTGTGG-AAAACTCTGGAAAGGTAAG
99044393 GCTTCATGTC
Statistics
Matches: 83, Mismatches: 17, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
27 16 0.19
28 35 0.42
29 29 0.35
30 3 0.04
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (28 bp):
TTTGTGGAAAACTCTGGAAAGGTAAGCC
Found at i:99052323 original size:23 final size:22
Alignment explanation
Indices: 99052273--99052316 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
99052263 TAGGTATTAA
99052273 ATTATTGGTAAATTTTTGTTTT
1 ATTATTGGTAAATTTTTGTTTT
99052295 ATTATTGGTAAATTTTTGTTTT
1 ATTATTGGTAAATTTTTGTTTT
99052317 GTTTATTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.14, T:0.64
Consensus pattern (22 bp):
ATTATTGGTAAATTTTTGTTTT
Found at i:99052686 original size:31 final size:31
Alignment explanation
Indices: 99052663--99052731 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
99052653 TAGCTTAGTG
99052663 ACTTAAATAAAAACATTT-AAATAGTTCAATA
1 ACTTAAATAAAAAC-TTTCAAATAGTTCAATA
* *
99052694 ACTTAAATAAAAACTTTCAAATAATTCAATG
1 ACTTAAATAAAAACTTTCAAATAGTTCAATA
99052725 AC-TAAAT
1 ACTTAAAT
99052732 TGTATCTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 8 0.23
31 27 0.77
ACGTcount: A:0.54, C:0.12, G:0.03, T:0.32
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTCAAATAGTTCAATA
Found at i:99067835 original size:75 final size:75
Alignment explanation
Indices: 99067656--99068108 Score: 472
Period size: 75 Copynumber: 6.0 Consensus size: 75
99067646 TCTGTTTTTT
* * **
99067656 AAATCAACTCATAGTGCGAGAGGTGAGTTGACCCTCAGCTCACGTGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC--GCTGAGGTATTTTCAATTTC
*
99067721 TGTTTCTGTTTGTC-A
64 TG---CT-TTTTTCAA
* * * * **
99067736 AAACCAACTCATATTGTGAGAGGTGAGTCGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
99067801 CTTTTTTCAA
66 CTTTTTTCAA
*
99067811 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
99067876 --TTTTTCAA
66 CTTTTTTCAA
* * * * *
99067884 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
****
99067949 CTTTCAAAAAA
66 CTTT-TTTCAA
* * * *
99067960 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTTACACACTGAGGTATTTTCAAGTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATTT
* *
99068024 CCGC--TTCTCAA
63 CTGCTTTTTTCAA
* * **
99068035 AAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGGA-ACGTTGAGGTATTTTCAATTAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GGACACGCTGAGGTATTTTCAATTTCT
99068099 G-TTTTTTCAA
65 GCTTTTTTCAA
99068109 TTTATGCTTT
Statistics
Matches: 312, Mismatches: 50, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
73 85 0.27
74 12 0.04
75 100 0.32
76 37 0.12
77 2 0.01
78 41 0.13
80 35 0.11
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (75 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
CTTTTTTCAA
Found at i:99068055 original size:151 final size:147
Alignment explanation
Indices: 99067656--99068333 Score: 567
Period size: 151 Copynumber: 4.4 Consensus size: 147
99067646 TCTGTTTTTT
* * **
99067656 AAATCAACTCATAGTGCGAGAGGTGAGTTGACCCTCAGCTCACGTGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC--GCTGAGGTATTTTCAA-TTC
* * * * * ** * **
99067721 TGTTTCTGTTTGTC-AAAACCAACTCATATTGTGAGAGGTGAGTCGAGCCTCAAGACACATTGAG
63 AG---C---TTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
* * ****
99067785 GTATTTTCAATTTCTGCTTTTTTCAA
122 GTATTTTCAAATTCTACTTTCAAAAA
* *
99067811 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-TTCAG
* * *
99067876 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTC
65 CTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC
99067941 AAATTCTACTTTCAAAAAA
130 AAATTCTACTTTC-AAAAA
* * *
99067960 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTTACACACTGAGGTATTTTCAAGTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAA-TT
* * * * *
99068024 CCGCTTCTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGGAACGTTGAGGTATT
62 CAGCTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
* * ** *
99068089 TTCAATTAATGTTTTTTCAATTTATGCTTTTCA
127 TTCAA--ATTCTACTTTCAA---A-------AA
*
99068122 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAACACGCTGAGGTAGTTTT-AATTTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTA-TTTTCAATTCA
* * *
99068186 GGTTCATCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGGCACGCTGACGTAT
64 GCTTC-TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTAT
* * * *
99068251 TGTCAATTTTTGGATGTTTC---AA
126 TTTCAAATTCT--A-CTTTCAAAAA
* *
99068273 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
99068334 TTTTTTGAAT
Statistics
Matches: 435, Mismatches: 62, Indels: 57
0.79 0.11 0.10
Matches are distributed among these distances:
147 4 0.01
148 61 0.14
149 39 0.09
150 17 0.04
151 121 0.28
152 2 0.00
153 28 0.06
155 40 0.09
160 6 0.01
161 18 0.04
162 39 0.09
163 56 0.13
164 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (147 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTCAGC
TTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
AATTCTACTTTCAAAAA
Found at i:99068283 original size:238 final size:237
Alignment explanation
Indices: 99067864--99068385 Score: 624
Period size: 238 Copynumber: 2.2 Consensus size: 237
99067854 GCTGAGGTAA
* * **
99067864 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAACACGC
* *
99067929 CGAGGTATTTTCAAATTCTACTTTCAAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCC
66 CGAGGTATTTT-AAATTCTACGTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * * *
99067994 TTGGCTTACACACTGAGGTATTTTCAAGTTCCGCTTCTCAAAAATCAACTCATATTACGAGAGGT
130 TCGGC-GACACACTGACGTATTGTCAAGTTCCGATTCTCAAAAATCAACTCATATTACGAGAGGT
* *
99068059 GAGTTGAGCCTCAGGGA-ACGTTGAGGTATTTTCAATTAATGTTT
194 GAGTTGAGCCTC-GGGACACGCTGAGGTATTGTCAATTAATGTTT
99068103 TTTCAATTTATGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAACACG
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGAACACG
* * * *
99068167 CTGAGGTAGTTTT-AATT-TAGGTTCATCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG
65 CCGAGGTA-TTTTAAATTCTACGTTCA-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * ** * *
99068230 CCTCGG-GGCACGCTGACGTATTGTCAATTTTTGGATGTTTCAAAAATCAACTCATATTGCGAGA
128 CCTCGGCGACACACTGACGTATTGTCAA-GTTCCGAT-TCTCAAAAATCAACTCATATTACGAGA
99068294 GGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAA-T--T-TTT
191 GGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTAATGTTT
* * *
99068337 TTT-GA---ATG--TTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
99068386 TTTAATTTCT
Statistics
Matches: 249, Mismatches: 27, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
228 4 0.02
229 34 0.14
230 3 0.01
233 1 0.00
234 6 0.02
235 1 0.00
236 16 0.06
237 15 0.06
238 136 0.55
239 29 0.12
240 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (237 bp):
TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAACACGC
CGAGGTATTTTAAATTCTACGTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CGGCGACACACTGACGTATTGTCAAGTTCCGATTCTCAAAAATCAACTCATATTACGAGAGGTGA
GTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTAATGTTT
Found at i:99068286 original size:75 final size:75
Alignment explanation
Indices: 99068117--99068385 Score: 341
Period size: 75 Copynumber: 3.5 Consensus size: 75
99068107 AATTTATGCT
* *
99068117 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAACACGCTGAGGTAGTT-TT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGTA-TTGTC
*
99068180 AA-TTTAGG-T-
64 AATTTTTGGATG
* * * *
99068189 TCATCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGGCACGCTGACGTATTGT
1 T-TTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGT
99068254 CAATTTTTGGATG
63 CAATTTTTGGATG
99068267 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAA
*
99068332 TTTTTTTTGAATG
66 ---TTTTTGGATG
* *
99068345 TTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
99068386 TTTAATTTCT
Statistics
Matches: 172, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
72 1 0.01
73 2 0.01
74 2 0.01
75 74 0.43
76 41 0.24
77 3 0.02
78 49 0.28
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (75 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAA
TTTTTGGATG
Found at i:99078040 original size:27 final size:26
Alignment explanation
Indices: 99077982--99078041 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
99077972 AGAGCTTAAC
*
99077982 ATAA-AATATATAAAACAATTTCAAA
1 ATAATAATATATAAAACAATTTAAAA
**
99078007 ATAAATAATATATAAGTCAATTTTAAAA
1 AT-AATAATATATAAAACAA-TTTAAAA
99078035 ATAATAA
1 ATAATAA
99078042 ATAATGATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 2 0.07
27 17 0.59
28 8 0.28
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (26 bp):
ATAATAATATATAAAACAATTTAAAA
Found at i:99078044 original size:28 final size:26
Alignment explanation
Indices: 99077984--99078044 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
99077974 AGCTTAACAT
*
99077984 AAAATATATAAAACAATTTCAAAATA
1 AAAATATATAAAACAATTTAAAAATA
**
99078010 AATAATATATAAGTCAATTTTAAAAATA
1 AA-AATATATAAAACAA-TTTAAAAATA
99078038 ATAAATA
1 A-AAATA
99078045 ATGATCTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.07
27 12 0.41
28 14 0.48
29 1 0.03
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAATATATAAAACAATTTAAAAATA
Found at i:99080275 original size:25 final size:25
Alignment explanation
Indices: 99080248--99080354 Score: 107
Period size: 25 Copynumber: 4.4 Consensus size: 25
99080238 GGAGGCCTAT
99080248 CCTCTTTTAAT-AACTGGGGCAAAG
1 CCTCTTTTAATAAACTGGGGCAAAG
*
99080272 TCCT-TTTTGATAAACTGGGGCAAAG
1 -CCTCTTTTAATAAACTGGGGCAAAG
*
99080297 -CTCTTTTAGGTAAACTGGGGCAAAG
1 CCTCTTTTA-ATAAACTGGGGCAAAG
** *
99080322 CC-CTTTTCGGTAAACTAGGGCAAAG
1 CCTCTTTT-AATAAACTGGGGCAAAG
99080347 CC-CTTTTA
1 CCTCTTTTA
99080355 GCACTTCCTC
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
23 2 0.03
24 10 0.14
25 58 0.82
26 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (25 bp):
CCTCTTTTAATAAACTGGGGCAAAG
Found at i:99080289 original size:50 final size:50
Alignment explanation
Indices: 99080248--99080355 Score: 132
Period size: 50 Copynumber: 2.2 Consensus size: 50
99080238 GGAGGCCTAT
* *
99080248 CCTCTTTTA-AT-AACTGGGGCAAAGTCCTTTTTGATAAACTGGGGCAAA
1 CCTCTTTTAGATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAA
* * * *
99080296 GCTCTTTTAGGTAAACTGGGGCAAAGCCCTTTTCGGTAAACTAGGGCAAA
1 CCTCTTTTAGATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAA
99080346 GCC-CTTTTAG
1 -CCTCTTTTAG
99080356 CACTTCCTCC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 8 0.16
49 1 0.02
50 40 0.80
51 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (50 bp):
CCTCTTTTAGATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAA
Found at i:99080704 original size:27 final size:27
Alignment explanation
Indices: 99080616--99080715 Score: 82
Period size: 27 Copynumber: 3.7 Consensus size: 27
99080606 TATTTTAGTA
**
99080616 CAGGGGTATTTCGATAA-TTCTAC-CCT
1 CAGGGGTATTTCGATAATTTC-ACAAAT
* *
99080642 ACAGGGGTATTTTGAT-ATTTTACAAAT
1 -CAGGGGTATTTCGATAATTTCACAAAT
*
99080669 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTCGATAATTTCACAAAT
* *
99080696 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTCGATAATTT
99080716 TACTGATCGA
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
25 1 0.02
26 14 0.24
27 42 0.72
28 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTCGATAATTTCACAAAT
Found at i:99080729 original size:27 final size:27
Alignment explanation
Indices: 99080646--99080784 Score: 113
Period size: 27 Copynumber: 5.2 Consensus size: 27
99080636 TACCCTACAG
99080646 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGATAATTTTACAAATCGA
* * *
99080672 GAGTATTTCGATAATTTCACAAATC-A
1 GGGTATTTTGATAATTTTACAAATCGA
* **
99080698 GGGGTATTTTGGTAATTTTACTGATCGA
1 -GGGTATTTTGATAATTTTACAAATCGA
* ** * *
99080726 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGATAATTTTACAAATCGA
* **
99080753 GGTTATTTT-AGTAATTTTTTAAATCGA
1 GGGTATTTTGA-TAATTTTACAAATCGA
99080780 GGGTA
1 GGGTA
99080785 AAACGGTAAT
Statistics
Matches: 88, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
26 11 0.12
27 76 0.86
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTACAAATCGA
Found at i:99080793 original size:27 final size:27
Alignment explanation
Indices: 99080763--99080919 Score: 224
Period size: 27 Copynumber: 5.8 Consensus size: 27
99080753 GGTTATTTTA
* *
99080763 GTAATTTTTTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
99080790 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
99080817 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
99080844 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
99080871 GTAATTCTATAATTCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
99080898 ATAATTATGTAAATCAAGGGTA
1 GTAATTCTATAAATCGAGGGTA
99080920 CTTTGGTAAT
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:99080930 original size:81 final size:81
Alignment explanation
Indices: 99080737--99080930 Score: 235
Period size: 81 Copynumber: 2.4 Consensus size: 81
99080727 GGTATTTTGG
* * * * * * *
99080737 TAATTTTGTAAACCAAGGTTATTTTAGTAATTTTTTAAATCGAGGGTAAAACGGTAATTCTATAA
1 TAATTATGTAAATCAAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAA
*
99080802 ATCGAGGGTAAAACGG
66 ATCGAGGGTAAAACGA
* * *** * *
99080818 TAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTATGTAAATCAAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAA
*
99080883 TTCGAGGGTAAAACGA
66 ATCGAGGGTAAAACGA
*
99080899 TAATTATGTAAATCAAGGGTACTTTGGTAATT
1 TAATTATGTAAATCAAGGGTAATTTGGTAATT
99080931 TTACAAATTA
Statistics
Matches: 91, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (81 bp):
TAATTATGTAAATCAAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAA
ATCGAGGGTAAAACGA
Found at i:99082428 original size:44 final size:44
Alignment explanation
Indices: 99082334--99082455 Score: 113
Period size: 44 Copynumber: 2.8 Consensus size: 44
99082324 TACTTGTTTT
* * *
99082334 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAACTTCA
1 ATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGCAACTTCA
* * * * *
99082378 ACCTACTCCACTGCATCTTCA-AGGAGATAAGGTTTGCGACTTCG
1 ATCTACTCCACTGCAACTTCAGA-GAGATAAGATTTGCAACTTCA
***
99082422 ATCTACTTTGCTGCAACTTCAG-GAAGATAAGATT
1 ATCTACTCCACTGCAACTTCAGAG-AGATAAGATT
99082456 CATCATGGTA
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
43 2 0.03
44 59 0.97
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGCAACTTCA
Found at i:99092159 original size:27 final size:26
Alignment explanation
Indices: 99092101--99092160 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
99092091 AGAGCTTAAC
*
99092101 ATAA-AATATATAAAACAATTTCAAA
1 ATAATAATATATAAAACAATTTAAAA
**
99092126 ATAAATAATATATAAGTCAATTTTAAAA
1 AT-AATAATATATAAAACAA-TTTAAAA
99092154 ATAATAA
1 ATAATAA
99092161 ATAAGGATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 2 0.07
27 17 0.59
28 8 0.28
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (26 bp):
ATAATAATATATAAAACAATTTAAAA
Found at i:99092163 original size:28 final size:26
Alignment explanation
Indices: 99092103--99092163 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
99092093 AGCTTAACAT
*
99092103 AAAATATATAAAACAATTTCAAAATA
1 AAAATATATAAAACAATTTAAAAATA
**
99092129 AATAATATATAAGTCAATTTTAAAAATA
1 AA-AATATATAAAACAA-TTTAAAAATA
99092157 ATAAATA
1 A-AAATA
99092164 AGGATCTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.07
27 12 0.41
28 14 0.48
29 1 0.03
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAATATATAAAACAATTTAAAAATA
Found at i:99098558 original size:21 final size:20
Alignment explanation
Indices: 99098534--99098576 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
99098524 TAAATGATGG
99098534 TATTAGAAATATACGATATAA
1 TATTAGAAATATAC-ATATAA
* *
99098555 TATTAGAAGTATACATGTAA
1 TATTAGAAATATACATATAA
99098575 TA
1 TA
99098577 GTATATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.35
Consensus pattern (20 bp):
TATTAGAAATATACATATAA
Found at i:99098738 original size:12 final size:12
Alignment explanation
Indices: 99098721--99098752 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
99098711 AAATAACATC
99098721 TAATAATATTAA
1 TAATAATATTAA
99098733 TAATAATATTAA
1 TAATAATATTAA
*
99098745 AAATAATA
1 TAATAATA
99098753 ATGAAGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:99098854 original size:13 final size:14
Alignment explanation
Indices: 99098836--99098866 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
99098826 ATGTATGAAT
99098836 ATATACATATA-TA
1 ATATACATATATTA
99098849 ATATACATATATTA
1 ATATACATATATTA
99098863 ATAT
1 ATAT
99098867 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:99098934 original size:24 final size:23
Alignment explanation
Indices: 99098906--99098964 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 23
99098896 ATCATTAGTA
99098906 ATAATAATACTTTAAAAAAAATAAT
1 ATAATAATA--TTAAAAAAAATAAT
*
99098931 -TAAT-ATATTAATAAAAATAAT
1 ATAATAATATTAAAAAAAATAAT
99098952 AGTAATAATATTA
1 A-TAATAATATTA
99098965 GTAATATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 13 0.43
23 7 0.23
24 10 0.33
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
ATAATAATATTAAAAAAAATAAT
Found at i:99099435 original size:24 final size:24
Alignment explanation
Indices: 99099407--99099464 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
99099397 AAAAAGGGTG
*
99099407 GGGGAGAGGAG-AGAAAGGAGAGAA
1 GGGGAGAGGAGAAGAAAAGAGAG-A
99099431 GGGGAGAGG-GAAGAAAAGAGAGA
1 GGGGAGAGGAGAAGAAAAGAGAGA
99099454 GGGGAGAGGAG
1 GGGGAGAGGAG
99099465 GGAGCCCCGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 11 0.35
24 20 0.65
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (24 bp):
GGGGAGAGGAGAAGAAAAGAGAGA
Found at i:99100808 original size:88 final size:88
Alignment explanation
Indices: 99100668--99100870 Score: 221
Period size: 88 Copynumber: 2.3 Consensus size: 88
99100658 ATCTTGAGCC
* * *
99100668 CAACTCATTTCTCGTAATATGAATTGACTCTTTAAAAACAGATATTAAAAACAAAAACTGAAAAT
1 CAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAACAGATATTAAAAACAAAAACTGAAAAT
*
99100733 ATCTCAGCATGTGAACAAAGGCT
66 ACCTCAGCATGTGAACAAAGGCT
* * ** * ***
99100756 CAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAAACAGA-ATTTGCCAAACAGATTTTGAAA
1 CAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAACAGATA-TT-AAAAACAAAAACTGAAA
* * **
99100819 ATACCTCGGCATGTGACCCGAGGCT
64 ATACCTCAGCATGTGAACAAAGGCT
*
99100844 CAACTCACCTCTCGCAATATGAGTTGA
1 CAACTCACTTCTCGCAATATGAGTTGA
99100871 AATTAAAACA
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
86 1 0.01
87 14 0.15
88 81 0.84
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.28
Consensus pattern (88 bp):
CAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAACAGATATTAAAAACAAAAACTGAAAAT
ACCTCAGCATGTGAACAAAGGCT
Found at i:99100921 original size:72 final size:73
Alignment explanation
Indices: 99100813--99100964 Score: 211
Period size: 72 Copynumber: 2.1 Consensus size: 73
99100803 CAAACAGATT
* *
99100813 TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AA
1 TTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTGAA
99100877 AACACAAAAA
65 AA-ACAAAAA
* * **
99100887 TTGAAAATACCTCAGC-GTGCCCCGAGGCTCAACTCACCTCTAGCGATATGAGTTGATTTTGAAA
1 TTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTGAAA
99100951 AACAAAAA
66 AACAAAAA
99100959 TT-AAAA
1 TTGAAAA
99100965 GGCTTAACTC
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
71 4 0.06
72 48 0.68
73 4 0.06
74 15 0.21
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (73 bp):
TTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTGAAA
AACAAAAA
Found at i:99101057 original size:120 final size:124
Alignment explanation
Indices: 99100839--99101076 Score: 358
Period size: 120 Copynumber: 1.9 Consensus size: 124
99100829 ATGTGACCCG
*
99100839 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-AATT-AAACACAAAAATCGAAAATACCTCAGCG
*
99100904 TGCCCCGAGGCTCAACTCACCTCTAGCGATATGAGTTGA-TTTTGAAAAACAAAAATTAAA
64 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
* * *
99100964 AGGCTTAACTCACCTCTCGCAATATGAGTTG-A-T-AACACAAAAGTCGAAAATACCTCAGTGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAACACAAAAATCGAAAATACCTCAGCGTG
* *
99101026 CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAAACA
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTTGAAAAACA
99101077 GATTTCAAGA
Statistics
Matches: 104, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
120 60 0.58
122 13 0.12
123 1 0.01
125 30 0.29
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAACACAAAAATCGAAAATACCTCAGCGTG
CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
Found at i:99101417 original size:78 final size:77
Alignment explanation
Indices: 99101240--99101449 Score: 218
Period size: 78 Copynumber: 2.8 Consensus size: 77
99101230 ACAGAAATCT
* ** * **
99101240 AAAATACCTCAACCTGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----AATT-AA
1 AAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTGAA
* *
99101299 AACACAAAAATTG
66 AA-GCATAAATTG
* *
99101312 AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCCA-TATGAGTTGACTTTTTTTTTG
1 AAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCG-CATTATGAGTTGA-TTTTTTTTTG
99101376 AAAAGCATAAATTG
64 AAAAGCATAAATTG
* * **
99101390 AAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTT
1 AAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTT
99101450 GAAAACATAA
Statistics
Matches: 114, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
72 45 0.39
73 2 0.02
77 9 0.08
78 54 0.47
79 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (77 bp):
AAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTGAA
AAGCATAAATTG
Found at i:99114388 original size:30 final size:31
Alignment explanation
Indices: 99114354--99114423 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 31
99114344 AAAATAGTTT
*
99114354 TTAAATTATACCA-TTTTCTTAAATTGGTAC
1 TTAAACTATACCATTTTTCTTAAATTGGTAC
*
99114384 TTAAACTATACCATTTTTTTCTTAAGTTGGTAC
1 TTAAACTATACCA--TTTTTCTTAAATTGGTAC
99114417 TTAAACT
1 TTAAACT
99114424 TTTTTTAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 12 0.34
33 23 0.66
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.47
Consensus pattern (31 bp):
TTAAACTATACCATTTTTCTTAAATTGGTAC
Found at i:99115581 original size:7 final size:7
Alignment explanation
Indices: 99115571--99115596 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
99115561 GAAAATTTTA
99115571 AATATTC
1 AATATTC
99115578 AATATTC
1 AATATTC
99115585 AATATTC
1 AATATTC
99115592 AATAT
1 AATAT
99115597 GAAATTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (7 bp):
AATATTC
Found at i:99117730 original size:12 final size:13
Alignment explanation
Indices: 99117715--99117749 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
99117705 ATGTATATGC
99117715 ATATAATAA-AAT
1 ATATAATAATAAT
99117727 ATATAATAATAAT
1 ATATAATAATAAT
99117740 A-ATAATAATA
1 ATATAATAATA
99117750 TGAAAATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATATAATAATAAT
Found at i:99117735 original size:3 final size:3
Alignment explanation
Indices: 99117717--99117749 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
99117707 GTATATGCAT
99117717 ATA ATA A-A ATA TATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
99117750 TGAAAATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:99118894 original size:17 final size:17
Alignment explanation
Indices: 99118872--99118905 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
99118862 TGACGGTTAT
99118872 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
99118889 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
99118906 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:99119836 original size:127 final size:127
Alignment explanation
Indices: 99119621--99120013 Score: 670
Period size: 127 Copynumber: 3.1 Consensus size: 127
99119611 TCAACTCATT
99119621 TCTCGCAATATGAGTTGAATT-TTGA-AAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
1 TCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
99119684 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
65 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
*
99119747 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTTAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
99119812 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
*
99119874 TCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
* ** * *
99119939 AACTCACCTCTA-CAATATGAGTTGATTTTGAAAAA-CAAAAATGAAAAGGCTT-AACTCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGG-TTCAACCCACC
99119999 TCTCGCAATATGAGT
1 TCTCGCAATATGAGT
99120014 CAATTTAAAA
Statistics
Matches: 255, Mismatches: 9, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
125 34 0.13
126 46 0.18
127 175 0.69
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (127 bp):
TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
Found at i:99132517 original size:21 final size:20
Alignment explanation
Indices: 99132493--99132535 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
99132483 TAAATGATGG
99132493 TATTAGAAATATACGATATAA
1 TATTAGAAATATAC-ATATAA
* *
99132514 TATTAGAAGTATACATGTAA
1 TATTAGAAATATACATATAA
99132534 TA
1 TA
99132536 GTATATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.35
Consensus pattern (20 bp):
TATTAGAAATATACATATAA
Found at i:99132604 original size:27 final size:27
Alignment explanation
Indices: 99132555--99132644 Score: 77
Period size: 27 Copynumber: 3.4 Consensus size: 27
99132545 AATATAACTA
*
99132555 ATAATATTAAAAAAA-TATGTATAAAAT
1 ATAATATTAAAAAAACT-TATATAAAAT
*
99132582 ATAATATTAAAAAAACTTATATACACAAC
1 ATAATATTAAAAAAACTTATATA-A-AAT
99132611 AT-ATA-TAAAAAATAC--ATAT--AAT
1 ATAATATTAAAAAA-ACTTATATAAAAT
99132633 ATAATATTAAAA
1 ATAATATTAAAA
99132645 CATTTACATA
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
22 4 0.07
23 3 0.06
24 5 0.09
26 4 0.07
27 27 0.50
28 7 0.13
29 4 0.07
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (27 bp):
ATAATATTAAAAAAACTTATATAAAAT
Found at i:99132699 original size:12 final size:12
Alignment explanation
Indices: 99132682--99132713 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
99132672 AAATAACATC
99132682 TAATAATATTAA
1 TAATAATATTAA
99132694 TAATAATATTAA
1 TAATAATATTAA
*
99132706 AAATAATA
1 TAATAATA
99132714 ATGAAGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:99132811 original size:13 final size:14
Alignment explanation
Indices: 99132793--99132823 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
99132783 ATGTATGAAT
99132793 ATATACATATA-TA
1 ATATACATATATTA
99132806 ATATACATATATTA
1 ATATACATATATTA
99132820 ATAT
1 ATAT
99132824 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:99132917 original size:23 final size:21
Alignment explanation
Indices: 99132864--99132919 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 21
99132854 TCATTAGTAA
99132864 TAATAATACTTTAAAAAAATAAT
1 TAATAATA--TTAAAAAAATAAT
*
99132887 TAAT-ATATTAATAAAATAAT
1 TAATAATATTAAAAAAATAAT
99132907 AGTAATAATATTA
1 --TAATAATATTA
99132920 GTAATATGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 12 0.41
22 7 0.24
23 10 0.34
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
TAATAATATTAAAAAAATAAT
Found at i:99133396 original size:9 final size:9
Alignment explanation
Indices: 99133382--99133422 Score: 52
Period size: 8 Copynumber: 4.9 Consensus size: 9
99133372 GGTGGGGGAG
99133382 AGGAGAGAA
1 AGGAGAGAA
99133391 AGGAGAG-A
1 AGGAGAGAA
99133399 AGGAGAG-A
1 AGGAGAGAA
99133407 AGGA-AGAA
1 AGGAGAGAA
*
99133415 AAGAGAGA
1 AGGAGAGA
99133423 GGGGAGAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 2 0.07
8 17 0.59
9 10 0.34
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (9 bp):
AGGAGAGAA
Found at i:99134413 original size:13 final size:12
Alignment explanation
Indices: 99134389--99134426 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
99134379 CTTTTAAAAA
99134389 TTTTATAATTTT
1 TTTTATAATTTT
99134401 TTTTATAAATTTT
1 TTTTAT-AATTTT
*
99134414 GTTTATAATTTT
1 TTTTATAATTTT
99134426 T
1 T
99134427 ATGATTCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (12 bp):
TTTTATAATTTT
Found at i:99136510 original size:3 final size:3
Alignment explanation
Indices: 99136502--99136540 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
99136492 CATGCTTTGC
99136502 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
99136541 GGATTAGTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:99138020 original size:16 final size:15
Alignment explanation
Indices: 99137999--99138046 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
99137989 GATGTGAATA
99137999 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
99138015 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
99138030 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
99138046 A
1 A
99138047 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:99138022 original size:24 final size:24
Alignment explanation
Indices: 99137995--99138050 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
99137985 TAATGATGTG
*
99137995 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
99138019 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
99138043 AATAATAA
1 AATAATAA
99138051 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:99138029 original size:8 final size:8
Alignment explanation
Indices: 99137995--99138046 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
99137985 TAATGATGTG
*
99137995 AATAATAA
1 AATATTAA
99138003 AATATATAA
1 AATAT-TAA
99138012 AATA-TAA
1 AATATTAA
99138019 AATATTAA
1 AATATTAA
*
99138027 AATATCAA
1 AATATTAA
*
99138035 AATATTAG
1 AATATTAA
99138043 AATA
1 AATA
99138047 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:99138267 original size:22 final size:24
Alignment explanation
Indices: 99138215--99138268 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
99138205 TAAAAATTTG
99138215 TACATAATATAGTGTTAAAAATACA
1 TACATAATATAG-GTTAAAAATACA
* *
99138240 TACATAATATA-GTT-AAGATATA
1 TACATAATATAGGTTAAAAATACA
99138262 TACATAA
1 TACATAA
99138269 GATAACATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 13 0.48
23 3 0.11
25 11 0.41
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (24 bp):
TACATAATATAGGTTAAAAATACA
Found at i:99138313 original size:23 final size:23
Alignment explanation
Indices: 99138287--99138410 Score: 66
Period size: 23 Copynumber: 5.5 Consensus size: 23
99138277 GTAAAAAAAA
99138287 ATATAAATAATATAATATTAAAG
1 ATATAAATAATATAATATTAAAG
* * *
99138310 ATAT--ATACATAAAATAGTATA-
1 ATATAAATA-ATATAATATTAAAG
*
99138331 ATATATATAATATAGA-ATTTAAA-
1 ATATAAATAATATA-ATA-TTAAAG
** *
99138354 ATATACCTAATAT-AT-TAAAAG
1 ATATAAATAATATAATATTAAAG
*
99138375 AATATATATAATATAATATT-AAG
1 -ATATAAATAATATAATATTAAAG
*
99138398 AAATATAATAATA
1 ATATA-AATAATA
99138411 ACAAAAAAGG
Statistics
Matches: 76, Mismatches: 14, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
20 4 0.05
21 8 0.11
22 30 0.39
23 33 0.43
24 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATAAATAATATAATATTAAAG
Found at i:99138321 original size:25 final size:25
Alignment explanation
Indices: 99138200--99138410 Score: 94
Period size: 25 Copynumber: 9.0 Consensus size: 25
99138190 AATACGTGAC
* * *
99138200 AATATTAAAAATTTGTACATAATAT
1 AATATTAAAGATATATACATAATAT
* * * *
99138225 AGTGTTAAAAATACATACATAATAT
1 AATATTAAAGATATATACATAATAT
* *
99138250 -A-GTT-AAGATATATACATAAGAT
1 AATATTAAAGATATATACATAATAT
* * * *
99138272 AACATGTAAAAAAAAATATAAATAATAT
1 AATAT-T--AAAGATATATACATAATAT
*
99138300 AATATTAAAGATATATACATAAAAT
1 AATATTAAAGATATATACATAATAT
* * *
99138325 AGTA-T-AATATATATA-AT-ATAG
1 AATATTAAAGATATATACATAATAT
*
99138346 AAT-TT-AA-A-ATATACCTAATAT
1 AATATTAAAGATATATACATAATAT
* *
99138367 -AT-TAAAAGA-ATATATATAATAT
1 AATATTAAAGATATATACATAATAT
*
99138389 AATATT-AAGAAATATA-ATAATA
1 AATATTAAAGATATATACATAATA
99138411 ACAAAAAAGG
Statistics
Matches: 142, Mismatches: 30, Indels: 30
0.70 0.15 0.15
Matches are distributed among these distances:
19 5 0.04
20 5 0.04
21 12 0.08
22 29 0.20
23 25 0.18
24 8 0.06
25 39 0.27
27 1 0.01
28 18 0.13
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
AATATTAAAGATATATACATAATAT
Found at i:99138419 original size:45 final size:43
Alignment explanation
Indices: 99138279--99138419 Score: 117
Period size: 45 Copynumber: 3.2 Consensus size: 43
99138269 GATAACATGT
* *
99138279 AAAAAAA-AATATAAATAATATAATATTAAAGATAT-ATACATA
1 AAAAAAAGAATATATATAATATAATATTAAAAATATAATA-ATA
** * * *
99138321 AAATAGTATAATATATATAATATAGA-ATTTAAAATATACCTAATA
1 AAA-AAAAGAATATATATAATATA-ATATTAAAAATATA-ATAATA
**
99138366 TATTAAAAGAATATATATAATATAATATTAAGAAATATAATAATA
1 -AAAAAAAGAATATATATAATATAATATTAA-AAATATAATAATA
99138411 ACAAAAAAG
1 A-AAAAAAG
99138420 GAGAGAGAGG
Statistics
Matches: 75, Mismatches: 15, Indels: 15
0.71 0.14 0.14
Matches are distributed among these distances:
42 3 0.04
43 2 0.03
44 25 0.33
45 35 0.47
46 10 0.13
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (43 bp):
AAAAAAAGAATATATATAATATAATATTAAAAATATAATAATA
Found at i:99138935 original size:30 final size:30
Alignment explanation
Indices: 99138899--99139043 Score: 227
Period size: 30 Copynumber: 4.8 Consensus size: 30
99138889 TAGGTACAAG
* * *
99138899 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
99138929 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* * *
99138959 TGGTGATGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
99138989 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
99139019 TGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGT
99139044 TGAGAAAAGT
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 105 1.00
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:99138992 original size:60 final size:60
Alignment explanation
Indices: 99138899--99139043 Score: 254
Period size: 60 Copynumber: 2.4 Consensus size: 60
99138889 TAGGTACAAG
*
99138899 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
99138959 TGGTGATGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
99139019 TGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
99139044 TGAGAAAAGT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 80 1.00
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:99139810 original size:14 final size:14
Alignment explanation
Indices: 99139791--99139840 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
99139781 GAGTTGATTT
* *
99139791 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
99139805 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
99139820 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
99139834 TT-AAAAA
1 TTGAAAAA
99139841 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:99139979 original size:75 final size:75
Alignment explanation
Indices: 99139820--99140060 Score: 274
Period size: 76 Copynumber: 3.2 Consensus size: 75
99139810 AAAACAGAAA
* * ** *
99139820 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTT-GCAATA
1 TTGAAAAACAGAAATTAAAAATACCTCAG--TGTGTCCCGAGGCTCAACTCACCT-TTCGCAATA
*
99139884 TGAGTT-A-ATTT
63 TGAGTTGATTTTT
* * * *
99139895 TTGACAAACAGAAATTGAAATTACCTCAGTGTGTCCCGAGGCTTAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGTGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
99139960 GTTGATTTTT
66 GTTGATTTTT
** * *
99139970 TTGAAAAACAGAAATTTAAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGTGTGTCCCGAGGCTCAACTCACCTTTCGCAATATG
99140035 AGTTGATTTTT
65 AGTTGATTTTT
**
99140046 TT-ACGAACAGAAATT
1 TTGAAAAACAGAAATT
99140061 GAAGAACAGA
Statistics
Matches: 142, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
72 2 0.01
73 32 0.23
74 3 0.02
75 49 0.35
76 56 0.39
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (75 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGTGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
GTTGATTTTT
Found at i:99140069 original size:14 final size:14
Alignment explanation
Indices: 99140050--99140077 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
99140040 ATTTTTTTAC
99140050 GAACAGAAATTGAA
1 GAACAGAAATTGAA
99140064 GAACAGAAATTGAA
1 GAACAGAAATTGAA
99140078 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:99140122 original size:90 final size:88
Alignment explanation
Indices: 99139970--99140153 Score: 264
Period size: 89 Copynumber: 2.1 Consensus size: 88
99139960 GTTGATTTTT
*
99139970 TTGAAAAACAGAAATTTAAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
99140035 AGTTGATTTTTTTACGAACAGAAA
66 AGTT-AATTTTTGACAAACAGAAA
* *
99140059 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAAT
99140122 ATGAGTTAATTTTTGACAAACAGAAA
63 ATGAGTTAATTTTTGACAAACAGAAA
99140148 TTGAAA
1 TTGAAA
99140154 TTACCTCAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
88 18 0.21
89 34 0.40
90 31 0.36
91 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTGACAAACAGAAA
Found at i:99140189 original size:72 final size:72
Alignment explanation
Indices: 99140065--99140300 Score: 319
Period size: 72 Copynumber: 3.2 Consensus size: 72
99140055 GAAATTGAAG
* *
99140065 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAATACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
99140130 ATTTTTGACA
63 ATTTTTGACA
* *
99140140 AACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATT
*
99140205 TTTGAAA
66 TTTGACA
* *
99140212 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATTAGTTGA
1 AACAGAAA-TTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT-A
* * *
99140277 TTTTTTTTACG
63 -ATTTTTGACA
99140288 AACAGAAATTGAA
1 AACAGAAATTGAA
99140301 GAACAGAAAT
Statistics
Matches: 143, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
72 50 0.35
73 23 0.16
74 30 0.21
75 26 0.18
76 14 0.10
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (72 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATT
TTTGACA
Found at i:99140306 original size:14 final size:14
Alignment explanation
Indices: 99140287--99140314 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
99140277 TTTTTTTTAC
99140287 GAACAGAAATTGAA
1 GAACAGAAATTGAA
99140301 GAACAGAAATTGAA
1 GAACAGAAATTGAA
99140315 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:99140356 original size:237 final size:238
Alignment explanation
Indices: 99139812--99140692 Score: 1361
Period size: 237 Copynumber: 3.7 Consensus size: 238
99139802 AAATTGAAAA
* * *
99139812 AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCT
1 AACAGAAATTGAAAACCAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* * *
99139877 TGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGTGTGTCCCGAGGCTTAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
99139942 TCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCATGTCC
131 TCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCC
99140007 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
195 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
99140051 AACAGAAATTGAAGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
1 AACAGAAATTGAA-AACCAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
99140115 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCGAGGCTCAA
65 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
99140179 CTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCC
130 CTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCC
*
99140243 TGAGGCTCAACTCACCTCTCGCAATATTAGTTGATTTTTTTTACG
195 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTACG
99140288 AACAGAAATTGAAGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
1 AACAGAAATTGAA-AACCAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
*
99140352 TCGCAATATGAGTTAATTTTTGACAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
65 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
* * *
99140417 CTCACCTCTCGCAATAT-AGTTGA-TTTTTGACAAATAGAAA--TAGAAATTACCTCAGCGTGTC
130 CTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTA-AAAATACCTCAGCGTGTC
* **
99140478 CTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTAAA
194 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
* * *
99140520 AACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCT
1 AACAGAAATTGAAAACCAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* * ** * * ** * *
99140585 TGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCATGTCCTGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
99140650 TCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATCAGAAAT
131 TCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAAT
99140693 AAAAACATCA
Statistics
Matches: 600, Mismatches: 33, Indels: 21
0.92 0.05 0.03
Matches are distributed among these distances:
231 2 0.00
232 134 0.22
233 6 0.01
235 16 0.03
236 122 0.20
237 147 0.25
238 61 0.10
239 110 0.18
240 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (238 bp):
AACAGAAATTGAAAACCAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCT
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
Found at i:99140360 original size:91 final size:90
Alignment explanation
Indices: 99140206--99140372 Score: 239
Period size: 91 Copynumber: 1.8 Consensus size: 90
99140196 GAGTTGATTT
* * *
99140206 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
*
99140271 AGTTGATTTTTTTTACGAACAGAAA
66 AGTTAATTTTTTTTACGAACAGAAA
* *
99140296 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
99140359 ATGAGTTAATTTTT
63 ATGAGTTAATTTTT
99140373 GACAAATAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
89 14 0.21
90 13 0.19
91 39 0.57
92 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (90 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTTTTACGAACAGAAA
Found at i:99140426 original size:73 final size:73
Alignment explanation
Indices: 99140305--99140533 Score: 329
Period size: 72 Copynumber: 3.2 Consensus size: 73
99140295 ATTGAAGAAC
** ** *
99140305 AGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATT
1 AGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
99140370 TTTGACAAAT
64 TTTGACAAAT
99140380 AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT-AGTTGATTTT
1 AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
99140444 TGACAAAT
66 TGACAAAT
* **
99140452 AGAAATAGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
99140516 T-AAAAAC
66 TGACAAAT
99140523 AGAAATTGAAA
1 AGAAATTGAAA
99140534 ACCAGAAATT
Statistics
Matches: 142, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
71 14 0.10
72 72 0.51
73 37 0.26
75 19 0.13
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (73 bp):
AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGACAAAT
Found at i:99140539 original size:14 final size:14
Alignment explanation
Indices: 99140517--99140548 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
99140507 AGTTGATTTT
99140517 AAAAACAGAAATTG
1 AAAAACAGAAATTG
*
99140531 AAAACCAGAAATTG
1 AAAAACAGAAATTG
99140545 AAAA
1 AAAA
99140549 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.09, G:0.12, T:0.12
Consensus pattern (14 bp):
AAAAACAGAAATTG
Found at i:99140648 original size:160 final size:157
Alignment explanation
Indices: 99140380--99140676 Score: 427
Period size: 160 Copynumber: 1.9 Consensus size: 157
99140370 TTTGACAAAT
* * * *
99140380 AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAGTTGATTTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATAGCTAATTTTT
** *
99140445 GACAAATAGAAATAGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
66 GACAAATAGAAATAGAAACCACCTCAGCATGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
99140510 TGATTTTAAAAACAGAAATTGAAAACC
131 TGATTTTAAAAACAGAAATTGAAAACC
* *
99140537 AGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGCTAATT
1 AGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATAT-AGCTAATT
* * *
99140602 TTTGATGAACATA-AATTA-AAACCACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATA
63 TTTGA-CAA-ATAGAAATAGAAACCACCTCAGCATGTCCTAAGGCTCAACTCACCTCTCGCAATA
99140665 TGAGTTGATTTT
126 TGAGTTGATTTT
99140677 TTTGAAAATC
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
157 24 0.20
159 26 0.21
160 64 0.52
161 6 0.05
162 3 0.02
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (157 bp):
AGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATAGCTAATTTTT
GACAAATAGAAATAGAAACCACCTCAGCATGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTAAAAACAGAAATTGAAAACC
Found at i:99148450 original size:12 final size:12
Alignment explanation
Indices: 99148430--99148465 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
99148420 TGGGATATGC
*
99148430 AATGTATGAATG
1 AATGCATGAATG
99148442 AATGCATGAATG
1 AATGCATGAATG
99148454 AATGCATGAATG
1 AATGCATGAATG
99148466 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:99150013 original size:8 final size:8
Alignment explanation
Indices: 99149988--99150039 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
99149978 TAATGATGTG
*
99149988 AATAATAA
1 AATATTAA
99149996 AATATATAA
1 AATAT-TAA
99150005 AATATT-A
1 AATATTAA
99150012 AATATTAA
1 AATATTAA
*
99150020 AATATCAA
1 AATATTAA
*
99150028 AATATTAG
1 AATATTAA
99150036 AATA
1 AATA
99150040 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (8 bp):
AATATTAA
Found at i:99150015 original size:24 final size:24
Alignment explanation
Indices: 99149987--99150043 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
99149977 ATAATGATGT
*
99149987 GAATAATAAAATATATAAAATATTA
1 GAATAATAAAATAT-CAAAATATTA
*
99150012 -AATATTAAAATATCAAAATATTA
1 GAATAATAAAATATCAAAATATTA
99150035 GAATAATAA
1 GAATAATAA
99150044 TAATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 9 0.32
24 19 0.68
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.32
Consensus pattern (24 bp):
GAATAATAAAATATCAAAATATTA
Found at i:99150222 original size:25 final size:25
Alignment explanation
Indices: 99150194--99150242 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
99150184 CGTGATAATA
99150194 TTAAAAATA-AGTACATAATATAGTG
1 TTAAAAATACA-TACATAATATAGTG
99150219 TTAAAAATACATACATAATATAGT
1 TTAAAAATACATACATAATATAGT
99150243 TAAGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (25 bp):
TTAAAAATACATACATAATATAGTG
Found at i:99150257 original size:22 final size:24
Alignment explanation
Indices: 99150194--99150258 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 24
99150184 CGTGATAATA
99150194 TTAAAAATA-AGTACATAATATAGTG
1 TTAAAAATACA-TACATAATATAG-G
99150219 TTAAAAATACATACATAATATA-G
1 TTAAAAATACATACATAATATAGG
* *
99150242 TT-AAGATATATACATAA
1 TTAAAAATACATACATAA
99150259 GATAACATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
22 13 0.35
23 3 0.08
25 20 0.54
26 1 0.03
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (24 bp):
TTAAAAATACATACATAATATAGG
Found at i:99150296 original size:14 final size:14
Alignment explanation
Indices: 99150274--99150336 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
99150264 CATGTAAAAC
99150274 AATAT-ATATAAAT
1 AATATAATATAAAT
*
99150287 AATATAATATTAAAG
1 AATATAATA-TAAAT
99150302 ATATATACATA-AAAT
1 A-ATATA-ATATAAAT
* *
99150317 AGTATAATATATAT
1 AATATAATATAAAT
99150331 AATATA
1 AATATA
99150337 GAATTTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
13 8 0.20
14 15 0.38
15 9 0.22
16 5 0.12
17 3 0.08
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.37
Consensus pattern (14 bp):
AATATAATATAAAT
Found at i:99150305 original size:23 final size:23
Alignment explanation
Indices: 99150279--99150400 Score: 64
Period size: 23 Copynumber: 5.5 Consensus size: 23
99150269 AAAACAATAT
99150279 ATATAAATAATATAATATTAAAG
1 ATATAAATAATATAATATTAAAG
* * *
99150302 ATAT--ATACATAAAATAGTATA-
1 ATATAAATA-ATATAATATTAAAG
*
99150323 ATATATATAATATAGA-ATTTAAA-
1 ATATAAATAATATA-ATA-TTAAAG
** *
99150346 ATATACCTAATAT-AT-TAAAAG
1 ATATAAATAATATAATATTAAAG
*
99150367 A-ATATATAATATAATATT-AAG
1 ATATAAATAATATAATATTAAAG
*
99150388 AAATATAATAATA
1 ATATA-AATAATA
99150401 ACAAAAAAGG
Statistics
Matches: 75, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
20 13 0.17
21 15 0.20
22 19 0.25
23 28 0.37
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATAAATAATATAATATTAAAG
Found at i:99150330 original size:25 final size:25
Alignment explanation
Indices: 99150274--99150332 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
99150264 CATGTAAAAC
*
99150274 AATATATATAAATAATATAATATTA
1 AATATATATAAATAAAATAATATTA
* * *
99150299 AAGATATATACATAAAATAGTA-T-
1 AATATATATAAATAAAATAATATTA
99150322 AATATATATAA
1 AATATATATAA
99150333 TATAGAATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
23 9 0.32
24 1 0.04
25 18 0.64
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (25 bp):
AATATATATAAATAAAATAATATTA
Found at i:99150378 original size:20 final size:20
Alignment explanation
Indices: 99150353--99150397 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
99150343 AAAATATACC
*
99150353 TAATATATTA-AAAGAATATA
1 TAATATAATATAAAGAA-ATA
*
99150373 TAATATAATATTAAGAAATA
1 TAATATAATATAAAGAAATA
99150393 TAATA
1 TAATA
99150398 ATAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAATATAATATAAAGAAATA
Found at i:99150924 original size:30 final size:30
Alignment explanation
Indices: 99150888--99151062 Score: 287
Period size: 30 Copynumber: 5.8 Consensus size: 30
99150878 TAGGTACAAG
* *
99150888 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
99150918 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
99150948 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
99150978 TGGAGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
99151008 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
99151038 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
99151063 TGAGAAAGTT
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 133 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:99150986 original size:60 final size:60
Alignment explanation
Indices: 99150888--99151062 Score: 323
Period size: 60 Copynumber: 2.9 Consensus size: 60
99150878 TAGGTACAAG
*
99150888 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
99150948 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGAGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
99151008 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
99151063 TGAGAAAGTT
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 111 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:99154433 original size:90 final size:87
Alignment explanation
Indices: 99154326--99154494 Score: 239
Period size: 89 Copynumber: 1.9 Consensus size: 87
99154316 ATCAAACTTA
* ** * * *
99154326 ATCACTTTAATATTAAATTAATAAAATATTTATCAAGATAAATATTAGATTAAATTTAATGTTAA
1 ATCACTGTAATATTAAATTAATAAAATA-CAATCAACATAAATATTAAATTAAATTTAATATTAA
99154391 ATCTTATTAAAATAATAGAATGTTT
65 A-C-TATTAAAATAATAGAATGTTT
* *
99154416 ATCACTGTAATATTAAATTAATAAAATACAATTAACATAAATATTAAATTTAATTTAATATTAAA
1 ATCACTGTAATATTAAATTAATAAAATACAATCAACATAAATATTAAATTAAATTTAATATTAAA
99154481 CTATTAAAATAATA
66 CTATTAAAATAATA
99154495 TTAATTTTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
87 13 0.18
88 1 0.01
89 30 0.42
90 27 0.38
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (87 bp):
ATCACTGTAATATTAAATTAATAAAATACAATCAACATAAATATTAAATTAAATTTAATATTAAA
CTATTAAAATAATAGAATGTTT
Found at i:99156109 original size:12 final size:12
Alignment explanation
Indices: 99156092--99156122 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
99156082 GACCACACGC
99156092 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
99156104 CCGTGTGCTAGG
1 CCGTGTGCCAGG
99156116 CCGTGTG
1 CCGTGTG
99156123 AAAATGAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.29, G:0.42, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:99157338 original size:25 final size:25
Alignment explanation
Indices: 99157304--99157357 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
99157294 ACTCCTTTGC
*
99157304 GCTGAATATCATTAAGCTCATACGA
1 GCTGAATATCAGTAAGCTCATACGA
* *
99157329 GCTGAGTATCGGTAAGCTCATACGA
1 GCTGAATATCAGTAAGCTCATACGA
99157354 GCTG
1 GCTG
99157358 CGGTGAGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (25 bp):
GCTGAATATCAGTAAGCTCATACGA
Found at i:99159047 original size:15 final size:15
Alignment explanation
Indices: 99159023--99159054 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
99159013 GATGTATGAA
*
99159023 AAATATAAAATACAT
1 AAATACAAAATACAT
99159038 AAATACAAAATACAT
1 AAATACAAAATACAT
99159053 AA
1 AA
99159055 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (15 bp):
AAATACAAAATACAT
Found at i:99174134 original size:24 final size:23
Alignment explanation
Indices: 99174089--99174137 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
99174079 GATTTATCGC
*
99174089 ATTTTTACTAGTAGCTTGTCTGT
1 ATTTTTACTAGTAGATTGTCTGT
* *
99174112 ATTTTTACTGGTAGAATTTTCTGT
1 ATTTTTACTAGTAG-ATTGTCTGT
99174136 AT
1 AT
99174138 ATTGTTATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.20, C:0.10, G:0.16, T:0.53
Consensus pattern (23 bp):
ATTTTTACTAGTAGATTGTCTGT
Done.