Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 303 of 344
Found at i:100420438 original size:47 final size:47
Alignment explanation
Indices: 100420330--100420462 Score: 162
Period size: 47 Copynumber: 2.8 Consensus size: 47
100420320 AGTGAAAATT
* * * * *
100420330 TTAAATTTTCAATACTATTCGATATTTTCTTAATTTATGCAAATTTAA
1 TTAAAATTTCAATACTATTTGAT-TTTTTTTCATTTATGCAAATTCAA
100420378 TT-AAATTTGCAATACTATTTGATTTTTTTTCATTTATGC-AATTACAA
1 TTAAAATTT-CAATACTATTTGATTTTTTTTCATTTATGCAAATT-CAA
**
100420425 TTAAAATTTCAATACTGCTTGATTTTTTTTCATTTATG
1 TTAAAATTTCAATACTATTTGATTTTTTTTCATTTATG
100420463 ATGTTTGCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
46 4 0.05
47 50 0.67
48 21 0.28
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.52
Consensus pattern (47 bp):
TTAAAATTTCAATACTATTTGATTTTTTTTCATTTATGCAAATTCAA
Found at i:100426123 original size:46 final size:46
Alignment explanation
Indices: 100426056--100426230 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
100426046 TGTAACCCAC
* *
100426056 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
100426102 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * *
100426152 CTC-TCA---AACTGGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
*
100426195 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
100426231 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 61 0.57
47 25 0.23
48 1 0.01
49 1 0.01
50 8 0.07
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:100426231 original size:93 final size:93
Alignment explanation
Indices: 100426065--100426235 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
100426055 CCCATAAGTG
* * * *
100426065 AACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
100426130 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* *
100426158 AACTGGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
100426223 GAGTTCGGATGCC
66 GAGCTCGGATGCC
100426236 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:100426703 original size:16 final size:16
Alignment explanation
Indices: 100426682--100426721 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
100426672 TTGCCCCTAA
100426682 ACTTTTGCATATTTAC
1 ACTTTTGCATATTTAC
100426698 ACTTTTGCATATTTAC
1 ACTTTTGCATATTTAC
100426714 ACTTTTGC
1 ACTTTTGC
100426722 CCCAAAGCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.23, C:0.20, G:0.07, T:0.50
Consensus pattern (16 bp):
ACTTTTGCATATTTAC
Found at i:100428690 original size:15 final size:15
Alignment explanation
Indices: 100428634--100428712 Score: 65
Period size: 15 Copynumber: 5.4 Consensus size: 15
100428624 CAAAGATAAC
*
100428634 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
100428648 AA-AAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
100428662 GAGAAACCCGGAATA
1 AAGAAATCCAGAATA
100428677 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
100428692 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
100428707 AAGAAA
1 AAGAAA
100428713 CCCAAGATAC
Statistics
Matches: 50, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
13 6 0.12
14 6 0.12
15 37 0.74
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:100428721 original size:15 final size:15
Alignment explanation
Indices: 100428645--100428721 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
100428635 AGAAAACCGA
100428645 ATAAA-AAATCCAAG
1 ATAAAGAAATCCAAG
* **
100428659 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
100428673 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
100428688 AATAAAGAGATCTAGG
1 -ATAAAGAAATCCAAG
*
100428704 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
100428719 ATA
1 ATA
100428722 CGATACTATG
Statistics
Matches: 47, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
14 7 0.15
15 37 0.79
16 3 0.06
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:100431769 original size:46 final size:45
Alignment explanation
Indices: 100431598--100431767 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 45
100431588 TGTAACCCGC
* * *
100431598 CCATAAGTAAAATCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
100431644 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
100431690 ACATCTCTCGAACTGGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
100431737 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
100431768 TTTGGATGCC
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 58 0.59
47 30 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:100433625 original size:14 final size:15
Alignment explanation
Indices: 100433602--100433643 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
100433592 GACCTCTCCA
100433602 TTTTCTTTTCTTTCT
1 TTTTCTTTTCTTTCT
100433617 TTTTC-TTTCTTTCT
1 TTTTCTTTTCTTTCT
100433631 TTTT-TTTTGCTTT
1 TTTTCTTTT-CTTT
100433644 TGAATGAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTCTTTTCTTTCT
Found at i:100434248 original size:10 final size:9
Alignment explanation
Indices: 100434223--100434247 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
100434213 ATTTGATCTC
100434223 TTTTTTTGT
1 TTTTTTTGT
100434232 TTTTTTTGT
1 TTTTTTTGT
100434241 TTTTTTT
1 TTTTTTT
100434248 TCATGACTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:100439142 original size:29 final size:28
Alignment explanation
Indices: 100439110--100439206 Score: 76
Period size: 29 Copynumber: 3.5 Consensus size: 28
100439100 AAGAATTTTA
*
100439110 AAATAACAGTATGT-AAAGATTTAAGAAAT
1 AAATAA-AGTATATGAAAGATTTAA-AAAT
*
100439139 AAATAATGTATATGAAAGATTTAAAAAT
1 AAATAAAGTATATGAAAGATTTAAAAAT
* * *
100439167 GACAGTAAA-TATAT-AAAAATTT-AAAAC
1 -A-AATAAAGTATATGAAAGATTTAAAAAT
*
100439194 AAATAATGTATAT
1 AAATAAAGTATAT
100439207 ATGTATAAAG
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
25 4 0.07
26 6 0.11
27 4 0.07
28 16 0.29
29 22 0.39
30 4 0.07
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (28 bp):
AAATAAAGTATATGAAAGATTTAAAAAT
Found at i:100443448 original size:25 final size:25
Alignment explanation
Indices: 100443414--100443463 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
100443404 CTCTTCTGGA
100443414 GCTTTCAACTAATTTTTTGTACTAT
1 GCTTTCAACTAATTTTTTGTACTAT
100443439 GCTTTCAACTAATTTTTTGTACTAT
1 GCTTTCAACTAATTTTTTGTACTAT
100443464 CAAATATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (25 bp):
GCTTTCAACTAATTTTTTGTACTAT
Found at i:100445303 original size:19 final size:19
Alignment explanation
Indices: 100445275--100445364 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
100445265 AATCTTTAAG
100445275 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
100445294 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
100445313 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
100445330 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
100445349 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
100445365 GATTTAATTT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
17 17 0.25
19 51 0.75
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:100445305 original size:36 final size:35
Alignment explanation
Indices: 100445265--100445364 Score: 105
Period size: 36 Copynumber: 2.7 Consensus size: 35
100445255 ATGGAAATAT
100445265 AATCTTTAAGGATATGCAATCTTAGATATGATATAC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATAC
*
100445301 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATAC
*
100445337 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTT---TAAGATATGCAATCTTAGA
100445365 GATTTAATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
33 6 0.11
34 1 0.02
35 2 0.04
36 27 0.50
37 1 0.02
38 10 0.19
40 1 0.02
41 6 0.11
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATAC
Found at i:100447143 original size:16 final size:16
Alignment explanation
Indices: 100447122--100447173 Score: 104
Period size: 16 Copynumber: 3.2 Consensus size: 16
100447112 TTTGGTTCGC
100447122 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
100447138 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
100447154 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
100447170 TGTA
1 TGTA
100447174 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:100447238 original size:44 final size:45
Alignment explanation
Indices: 100447154--100447244 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
100447144 GGATTAGAGG
* * *
100447154 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
100447199 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
100447243 TG
1 TG
100447245 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:100447734 original size:121 final size:121
Alignment explanation
Indices: 100447398--100447860 Score: 793
Period size: 122 Copynumber: 3.8 Consensus size: 121
100447388 ATCATATTTA
* * *
100447398 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTAAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
100447463 TATTCTTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
100447519 AACATAATTTATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTA
1 AACATAA-TTATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTA
*
100447584 ATATTCTTTATATTAATTTACTCACATCATAATATATGATACTGTAAAATATAAATT
65 ATATTCTTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
100447641 AACATAATTATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
100447706 TATTCTTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* * * * * *
100447762 AACATAATATATGATTAAATATATATTAATTGAACAATATAATTTAATAAAATTCTTAATAATTA
1 AACATAAT-TATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTA
100447827 ATATTC-TTATATTAATTTACTCAAATCATAATAT
65 ATATTCTTTATATTAATTTACTCAAATCATAATAT
100447861 TCTTAATAAT
Statistics
Matches: 326, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
121 154 0.47
122 172 0.53
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (121 bp):
AACATAATTATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:100447826 original size:243 final size:242
Alignment explanation
Indices: 100447398--100447860 Score: 818
Period size: 243 Copynumber: 1.9 Consensus size: 242
100447388 ATCATATTTA
*
100447398 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTAAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATAAATTTTAATTAAAATATATAATTAAAAAAAATTCTTAATAATTAA
*
100447463 TATTCTTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATT
66 TATTCTTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATA
* * *
100447528 TATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTT
131 TATGATTAAATAAATATTAATTAAACAATATAATTTAAAAAAATTCTTAATAATTAATATTC-TT
*
100447593 ATATTAATTTACTCACATCATAATATATGATACTGTAAAATATAAATT
195 ATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
100447641 AACATAATTATTATTAAATAAATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATAAATTTTAATTAAAATATATAATTAAAAAAAATTCTTAATAATTAA
100447706 TATTCTTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATA
66 TATTCTTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATA
* * *
100447771 TATGATTAAATATATATTAATTGAACAATATAATTTAATAAAATTCTTAATAATTAATATTCTTA
131 TATGATTAAATAAATATTAATTAAACAATATAATTTAAAAAAATTCTTAATAATTAATATTCTTA
100447836 TATTAATTTACTCAAATCATAATAT
196 TATTAATTTACTCAAATCATAATAT
100447861 TCTTAATAAT
Statistics
Matches: 209, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
242 27 0.13
243 182 0.87
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (242 bp):
AACATAATTATTATTAAATAAATTTTAATTAAAATATATAATTAAAAAAAATTCTTAATAATTAA
TATTCTTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATA
TATGATTAAATAAATATTAATTAAACAATATAATTTAAAAAAATTCTTAATAATTAATATTCTTA
TATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:100447834 original size:16 final size:16
Alignment explanation
Indices: 100447813--100447881 Score: 74
Period size: 16 Copynumber: 4.4 Consensus size: 16
100447803 ATTTAATAAA
100447813 ATTCTTAATAATTAAT
1 ATTCTTAATAATTAAT
100447829 ATTCTT-AT-ATTAAT
1 ATTCTTAATAATTAAT
* *
100447843 -TTACTCAAATCA-TAAT
1 ATT-CT-TAATAATTAAT
100447859 ATTCTTAATAATTAAT
1 ATTCTTAATAATTAAT
100447875 ATTCTTA
1 ATTCTTA
100447882 TATTAACTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
13 2 0.05
14 8 0.18
15 6 0.14
16 25 0.57
17 3 0.07
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTCTTAATAATTAAT
Found at i:100449838 original size:24 final size:24
Alignment explanation
Indices: 100449823--100449874 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
100449813 AATCAATGTC
100449823 AAATATATTATACTAATAAATGCT
1 AAATATATTATACTAATAAATGCT
*
100449847 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATGCT
100449871 AAAT
1 AAAT
100449875 CTTCTAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGCT
Found at i:100450787 original size:128 final size:127
Alignment explanation
Indices: 100450559--100450873 Score: 522
Period size: 128 Copynumber: 2.5 Consensus size: 127
100450549 CATACGAGGA
* * *
100450559 AGGACACGATATTTTAAGCCTCCAAAAAATTGAGATCACCTCATGATTTCCAAAACACGCGAGAC
1 AGGACACGATATTTTAAGCCTCC-AAAAACTGAGATCACCTCATGATTTCCAAAACACGCAAAAC
100450624 AACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATAACACATCCAGCATGTT
65 AACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATAACACATCCAGCATGTT
* * *
100450687 AGGACACGATATTTTTAAGCCTTCAAAAACTGAGATCATCTCATGATTTCCAAAACATGCAAAAC
1 AGGACACGATA-TTTTAAGCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCAAAAC
* *
100450752 AACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAGAATACCACATCCAGCATGTT
65 AACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATAACACATCCAGCATGTT
* *
100450815 AGGACACGATATTTTAAGCCTCCAAAAACTGAAACCACCTCATGATTTCCAAAACACGC
1 AGGACACGATATTTTAAGCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACGC
100450874 GACGAAAAAT
Statistics
Matches: 173, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
127 43 0.25
128 119 0.69
129 11 0.06
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (127 bp):
AGGACACGATATTTTAAGCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCAAAACA
ACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATAACACATCCAGCATGTT
Found at i:100451558 original size:29 final size:30
Alignment explanation
Indices: 100451479--100451559 Score: 87
Period size: 35 Copynumber: 2.6 Consensus size: 30
100451469 AGAGAAAACC
100451479 AAAT-TATACAT-AAATAAATTTAAAAGAAA
1 AAATATATACATAAAATAAATTTAAAAG-AA
100451508 AAATATATACATATATATAATAAATTTAAAAG-A
1 AAATATATAC--ATA-A-AATAAATTTAAAAGAA
*
100451541 AAATATTTACATAAAATAA
1 AAATATATACATAAAATAA
100451560 TATGAAAACA
Statistics
Matches: 45, Mismatches: 1, Indels: 12
0.78 0.02 0.21
Matches are distributed among these distances:
29 9 0.20
30 6 0.13
31 3 0.07
32 2 0.04
33 10 0.22
34 1 0.02
35 14 0.31
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (30 bp):
AAATATATACATAAAATAAATTTAAAAGAA
Found at i:100452861 original size:14 final size:14
Alignment explanation
Indices: 100452842--100452869 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100452832 GTCTCACATT
100452842 TATGTAGAAAAGAA
1 TATGTAGAAAAGAA
100452856 TATGTAGAAAAGAA
1 TATGTAGAAAAGAA
100452870 GCCATGGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.21, T:0.21
Consensus pattern (14 bp):
TATGTAGAAAAGAA
Found at i:100453384 original size:83 final size:83
Alignment explanation
Indices: 100453260--100453425 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
100453250 TTATTAATAT
100453260 TACCAGCCCTTTCAGATAAAACAAAATGGACTATTGTCACCACCACTGCTATTGGAGAACGCAAA
1 TACCAGCCCTTTCAGATAAAACAAAATGGACTATTGTCACCACCACTGCTATTGGAGAACGCAAA
100453325 ACAAATTTTATTTTTTGA
66 ACAAATTTTATTTTTTGA
*
100453343 TACCAGCCCTTTCAGATAAAACAAATTGGACTATTGTCACCACCACTGCTATTGGAGAACGCAAA
1 TACCAGCCCTTTCAGATAAAACAAAATGGACTATTGTCACCACCACTGCTATTGGAGAACGCAAA
100453408 ACAAATTTTATTTTTTGA
66 ACAAATTTTATTTTTTGA
100453426 CATGCTTTCC
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.30
Consensus pattern (83 bp):
TACCAGCCCTTTCAGATAAAACAAAATGGACTATTGTCACCACCACTGCTATTGGAGAACGCAAA
ACAAATTTTATTTTTTGA
Found at i:100461617 original size:6 final size:7
Alignment explanation
Indices: 100461596--100461624 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
100461586 ACTTGAATTC
100461596 AACTAAA
1 AACTAAA
100461603 AACTAAA
1 AACTAAA
100461610 AACT-AA
1 AACTAAA
100461616 AACTAAA
1 AACTAAA
100461623 AA
1 AA
100461625 TACATGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (7 bp):
AACTAAA
Found at i:100461619 original size:13 final size:14
Alignment explanation
Indices: 100461596--100461624 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
100461586 ACTTGAATTC
100461596 AACTAAAAACTAAA
1 AACTAAAAACTAAA
100461610 AACT-AAAACTAAA
1 AACTAAAAACTAAA
100461623 AA
1 AA
100461625 TACATGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (14 bp):
AACTAAAAACTAAA
Found at i:100470782 original size:20 final size:20
Alignment explanation
Indices: 100470757--100470796 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
100470747 CGATTTTGGT
100470757 ATGGCTGGTTATATTGCAGG
1 ATGGCTGGTTATATTGCAGG
100470777 ATGGCTGGTTATATTGCAGG
1 ATGGCTGGTTATATTGCAGG
100470797 TTTTCCTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.35, T:0.35
Consensus pattern (20 bp):
ATGGCTGGTTATATTGCAGG
Found at i:100471461 original size:24 final size:24
Alignment explanation
Indices: 100471434--100471490 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
100471424 TACTCATTTT
100471434 ACTTTATCAATATTT-AAAATAAAC
1 ACTTTAT-AATATTTAAAAATAAAC
* *
100471458 ACTTTATTATTTTTAAAAATAAAC
1 ACTTTATAATATTTAAAAATAAAC
*
100471482 AGTTTATAA
1 ACTTTATAA
100471491 ATATAATAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (24 bp):
ACTTTATAATATTTAAAAATAAAC
Found at i:100482981 original size:30 final size:30
Alignment explanation
Indices: 100482920--100482982 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
100482910 ATTTATTTTA
*
100482920 TTGTTAATTTTCTTATTATTTTAAAGGCAT
1 TTGTTAATTTTCTTATTATTTTAAAGCCAT
*
100482950 TTGTTAATTTTTTTATTATTTTAGAA-CCAT
1 TTGTTAATTTTCTTATTATTTTA-AAGCCAT
100482980 TTG
1 TTG
100482983 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.25, C:0.06, G:0.10, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAGCCAT
Found at i:100484238 original size:7 final size:7
Alignment explanation
Indices: 100484226--100484256 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
100484216 CATATACACT
100484226 TTTAATA
1 TTTAATA
100484233 TTTAATA
1 TTTAATA
100484240 TTTAATA
1 TTTAATA
100484247 TTTAATA
1 TTTAATA
100484254 TTT
1 TTT
100484257 TTTACCATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTAATA
Found at i:100489781 original size:36 final size:36
Alignment explanation
Indices: 100489741--100489812 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
100489731 GATTCATAAG
100489741 ACTAAGCTTTTCACCATAGGGTGCTCTCATATTATT
1 ACTAAGCTTTTCACCATAGGGTGCTCTCATATTATT
* * *
100489777 ACTAAGCTTTTCACCGTGGGGTGCTCTCGTATTATT
1 ACTAAGCTTTTCACCATAGGGTGCTCTCATATTATT
100489813 TGTAAAGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (36 bp):
ACTAAGCTTTTCACCATAGGGTGCTCTCATATTATT
Found at i:100495526 original size:14 final size:14
Alignment explanation
Indices: 100495471--100495526 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
100495461 AAATAAAAAT
100495471 ATATAATGATATA-A
1 ATATAAT-ATATATA
*
100495485 ATTATGAAAATATATA
1 A-TAT-AATATATATA
* *
100495501 ATACAATGTATATA
1 ATATAATATATATA
100495515 ATATAATATATA
1 ATATAATATATA
100495527 AAAATATCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
14 19 0.58
15 10 0.30
16 4 0.12
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (14 bp):
ATATAATATATATA
Found at i:100497770 original size:207 final size:207
Alignment explanation
Indices: 100497340--100497895 Score: 839
Period size: 207 Copynumber: 2.7 Consensus size: 207
100497330 AATCTGCCTT
* *
100497340 CTTCGATTTGCTCTCT-ACCAATACAGAGATGCCAAGTCATCTTAGATTTGTTTCAGT-GTAAGC
1 CTTCGATTTGCTCTCTGA-CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA-TCGTAAGC
* * * * * * *
100497403 ATGCGAAAACCAAATCGGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATACCAAACCATC
64 ACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATC
* * ** ** *
100497468 TTGGATC-TGCTTCAGTCTAGTCATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGAAT
129 TTGGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCTGCTACGTGTCTACCCTCCGTCGAAT
100497532 ATGGAGACGCCAAA
194 ATGGAGACGCCAAA
* *
100497546 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
100497611 GTGAAAGCCAAACCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
100497676 GGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCTGCTACGTGTCTGCTCTCCGTCGAATAT
131 GGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCTGCTACGTGTCTACCCTCCGTCGAATAT
100497741 GGAGACGCCAAA
196 GGAGACGCCAAA
*
100497753 CTTCGATTTGCTCTCTGACAATACAGAGATGCTAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
100497818 GTGAAAGCCAAATCAGCTATGACTTCGATTTGTTCCTTGTAAGCACAGGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
100497883 GGATCTTGCTTCA
131 GGATCTTGCTTCA
100497896 GCCAGATCTG
Statistics
Matches: 316, Mismatches: 31, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
205 1 0.00
206 117 0.37
207 198 0.63
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCTGCTACGTGTCTACCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:100500770 original size:43 final size:43
Alignment explanation
Indices: 100500627--100500751 Score: 223
Period size: 43 Copynumber: 2.9 Consensus size: 43
100500617 GTTTATTAAA
* *
100500627 AAAAAGCGTCGCTAAAAGTCGTGGCCCTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
*
100500670 AAAAAGCGCCGCTAAAAGTCGTGGTCTTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
100500713 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTT
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTT
100500752 TTCCCACAAA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 78 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
Found at i:100501152 original size:21 final size:21
Alignment explanation
Indices: 100501126--100501165 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
100501116 TCCTATGCTT
* *
100501126 TGCCTCTCTCGCTGTTGCCGC
1 TGCCTCCCTCGCTGCTGCCGC
100501147 TGCCTCCCTCGCTGCTGCC
1 TGCCTCCCTCGCTGCTGCC
100501166 TCCGCTCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.47, G:0.23, T:0.30
Consensus pattern (21 bp):
TGCCTCCCTCGCTGCTGCCGC
Found at i:100501602 original size:13 final size:14
Alignment explanation
Indices: 100501577--100501605 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
100501567 TGATGAATTG
100501577 AATTAAACAATTAT
1 AATTAAACAATTAT
100501591 AATTAAAC-ATTAT
1 AATTAAACAATTAT
100501604 AA
1 AA
100501606 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:100501809 original size:16 final size:17
Alignment explanation
Indices: 100501772--100501810 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
100501762 AAAATATTAT
*
100501772 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
100501789 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
100501805 TTAATA
1 TTAATA
100501811 AAACTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:100506655 original size:9 final size:9
Alignment explanation
Indices: 100506641--100506830 Score: 107
Period size: 9 Copynumber: 20.6 Consensus size: 9
100506631 TATTTAAGTA
100506641 TTATGTAAG
1 TTATGTAAG
100506650 TTATGTAAG
1 TTATGTAAG
*
100506659 TTATGATATG
1 TTATG-TAAG
* * *
100506669 ATATAT-AT
1 TTATGTAAG
*
100506677 TTATGTAAA
1 TTATGTAAG
* *
100506686 TTATAT-AT
1 TTATGTAAG
*
100506694 TTATCTAAG
1 TTATGTAAG
*
100506703 TTATATAAG
1 TTATGTAAG
100506712 TTATGTAAG
1 TTATGTAAG
*
100506721 TTATGTAAA
1 TTATGTAAG
*
100506730 TTATGATATAAAA
1 TTATG---T-AAG
*
100506743 TATATTTAAG
1 T-TATGTAAG
100506753 TATTATGTAAG
1 --TTATGTAAG
100506764 TTATGTAAG
1 TTATGTAAG
* *
100506773 TTATAT-AT
1 TTATGTAAG
*
100506781 TTATCTAAG
1 TTATGTAAG
*
100506790 TTATATAAG
1 TTATGTAAG
*
100506799 TTATGTACG
1 TTATGTAAG
*
100506808 TTTTGTAAG
1 TTATGTAAG
* *
100506817 TTATATAAA
1 TTATGTAAG
100506826 TTATG
1 TTATG
100506831 ATATCAAATA
Statistics
Matches: 139, Mismatches: 31, Indels: 22
0.72 0.16 0.11
Matches are distributed among these distances:
8 16 0.12
9 98 0.71
10 8 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:100506723 original size:71 final size:69
Alignment explanation
Indices: 100506641--100506803 Score: 202
Period size: 71 Copynumber: 2.3 Consensus size: 69
100506631 TATTTAAGTA
* * * *
100506641 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
100506705 ATATAAG
64 ATAT-AG
* * *
100506712 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
100506777 ATAT
66 ATAG
* *
100506781 TTATCTAAGTTATATAAGTTATG
1 TTATGTAAGTTATGTAAGTTATG
100506804 TACGTTTTGT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 27 0.34
70 15 0.19
71 38 0.47
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:100506779 original size:87 final size:90
Alignment explanation
Indices: 100506677--100506861 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 90
100506667 TGATATATAT
*
100506677 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
100506739 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
*
100506764 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----TTGTAAGTTATATAAATTA
* *
100506829 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
100506860 TT
1 TT
100506862 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 34 0.40
90 1 0.01
91 2 0.02
96 48 0.56
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:100506817 original size:114 final size:114
Alignment explanation
Indices: 100506617--100506830 Score: 290
Period size: 114 Copynumber: 1.9 Consensus size: 114
100506607 ACTAGTTATG
* * * *
100506617 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
*
100506682 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
100506731 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
100506794 ATAAGTTATGTACGTTT-TGTAAGTTATATAAATTATG
65 ATAAATTATATA--TTTATCTAAGTTATATAAATTATG
100506831 ATATCAAATA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.21
114 62 0.71
115 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:100506869 original size:87 final size:87
Alignment explanation
Indices: 100506677--100506861 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 87
100506667 TGATATATAT
*
100506677 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
100506742 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* * *
100506764 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTAT-ATA-AAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAA-
*
100506827 TATGATATCAAATATATTTATGT-A-
65 AAT-ATATCAAA-ATA-TTATGTAAG
100506851 TTATGTAAGTT
1 TTATGTAAGTT
100506862 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 70 0.81
88 3 0.03
89 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:100506955 original size:15 final size:15
Alignment explanation
Indices: 100506935--100506990 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
100506925 AAGTAGCGGG
100506935 ATTAAATAATATTTA
1 ATTAAATAATATTTA
100506950 ATTAAATAATATTT-
1 ATTAAATAATATTTA
100506964 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
100506979 ATTAAGTAATAT
1 ATTAAATAATAT
100506991 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:100508010 original size:355 final size:356
Alignment explanation
Indices: 100507200--100508076 Score: 1614
Period size: 355 Copynumber: 2.5 Consensus size: 356
100507190 ATAAAACAGA
*
100507200 GAATTTTTTAAGATTCATCATACGCGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
100507265 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCGTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
100507330 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAA-TTTGATAAAAATTAGTTATAACTTTTAAAGAC
100507395 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
195 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
100507460 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
260 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
100507525 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTT
325 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTT
* * *
100507557 GAATTTTTTAAGATCCATCATATGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
100507622 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
*
100507687 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTGATAAAAATTAGTTATAACTTTTAAAGACA
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTGATAAAAATTAGTTATAACTTTTAAAGACA
* *
100507752 TTTAAAAGTATTAAATATTAAAATCAAACATTATTAATGC-AAAAATTAGTAATTTGAATATAAT
196 TTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAAT
100507816 AATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
261 AATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
100507880 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 TGAGCTCGATAGAACTTTTTTCAAGTC-TTTT
*
100507912 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTCCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
100507977 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
* * *
100508042 AAGGCTGGAGAGAAGGTCATCCATTGCTGTAATTT
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTT
100508077 TAATGGACAA
Statistics
Matches: 504, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
354 86 0.17
355 190 0.38
356 72 0.14
357 156 0.31
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (356 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTGATAAAAATTAGTTATAACTTTTAAAGACA
TTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAAT
AATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
TGAGCTCGATAGAACTTTTTTCAAGTCTTTT
Found at i:100508321 original size:15 final size:15
Alignment explanation
Indices: 100508301--100508329 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
100508291 AGAATTTTGA
100508301 AATAAAACGTACCTT
1 AATAAAACGTACCTT
100508316 AATAAAACGTACCT
1 AATAAAACGTACCT
100508330 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:100508846 original size:183 final size:183
Alignment explanation
Indices: 100508531--100508897 Score: 689
Period size: 183 Copynumber: 2.0 Consensus size: 183
100508521 CCTAGAACAG
100508531 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
100508596 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAAGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAAGAGG
*
100508661 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
*
100508714 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
100508779 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAAGAGG
* *
100508844 AGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
100508897 A
1 A
100508898 AGGAACTATA
Statistics
Matches: 179, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 179 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAAGAGG
AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
Found at i:100508989 original size:14 final size:13
Alignment explanation
Indices: 100508970--100508999 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
100508960 CAATATAATT
100508970 TTACTTCATATATA
1 TTACTTCATATA-A
100508984 TTACTTCATATAA
1 TTACTTCATATAA
100508997 TTA
1 TTA
100509000 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:100511561 original size:15 final size:15
Alignment explanation
Indices: 100511541--100511589 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
100511531 GGTAAAAATT
100511541 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
*
100511556 TT-GGGG-G-A-AAT
1 TTGGGGGAGAAGAAG
*
100511567 TTGGAGGAGAAGAAG
1 TTGGGGGAGAAGAAG
100511582 TTGGGGGA
1 TTGGGGGA
100511590 AATTTGGTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
11 4 0.15
12 4 0.15
13 2 0.08
14 5 0.19
15 11 0.42
ACGTcount: A:0.31, C:0.00, G:0.51, T:0.18
Consensus pattern (15 bp):
TTGGGGGAGAAGAAG
Found at i:100511575 original size:26 final size:26
Alignment explanation
Indices: 100511540--100511596 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
100511530 GGGTAAAAAT
*
100511540 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGGAGGAGAAGAAGTTGGGGGAAA
100511566 TTTGGAGGAGAAGAAGTTGGGGGAAA
1 TTTGGAGGAGAAGAAGTTGGGGGAAA
100511592 TTTGG
1 TTTGG
100511597 TGGAAATCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.47, T:0.23
Consensus pattern (26 bp):
TTTGGAGGAGAAGAAGTTGGGGGAAA
Found at i:100511913 original size:28 final size:28
Alignment explanation
Indices: 100511881--100511938 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
100511871 AATCAAAACT
*
100511881 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
100511909 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
100511937 CT
1 CT
100511939 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:100511939 original size:21 final size:21
Alignment explanation
Indices: 100511915--100511958 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
100511905 ATCCCTATAA
* *
100511915 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
100511936 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
100511957 CC
1 CC
100511959 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:100512228 original size:21 final size:22
Alignment explanation
Indices: 100512195--100512238 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
100512185 ACTAACCCTT
*
100512195 AACCCCTAACCCTTAAATCATA
1 AACCCCTAACCCTTAAACCATA
100512217 AACCCC-AACCCTTAAACCATA
1 AACCCCTAACCCTTAAACCATA
100512238 A
1 A
100512239 TACATAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCCTAACCCTTAAACCATA
Found at i:100512369 original size:41 final size:41
Alignment explanation
Indices: 100512311--100512613 Score: 484
Period size: 41 Copynumber: 7.4 Consensus size: 41
100512301 AAACCCTAAA
* *
100512311 ATTTTTAGTGGCATTTTACCAAAAGCGCCGCTAATGCTCTT
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTT
*
100512352 ATTTTTAGCGGCGTTTTACCAAAAGCGCTGCTAATGCTCTT
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTT
*
100512393 ATTTTTAGCGGCGTTTTACCAAAAGCACCGCTAATGCTCTT
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTT
* *
100512434 ATTTTTAGCGGTGCTTTACCAAAAGCGCCGCTAATGCTCTT
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTT
* * *
100512475 ATTTTTAACGGCGTTTTACCAAAAGCGCCGCTATTGCT-TCG
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-T
100512516 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTT
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTT
*
100512557 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC-T
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTT
*
100512597 GTTTTTAGCGGCGTTTT
1 ATTTTTAGCGGCGTTTT
100512614 TGGTAAAACG
Statistics
Matches: 242, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
40 18 0.07
41 223 0.92
42 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (41 bp):
ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTT
Found at i:100521081 original size:14 final size:14
Alignment explanation
Indices: 100521026--100521081 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
100521016 AAATAAAAAT
100521026 ATATAATCATATA-A
1 ATATAAT-ATATATA
*
100521040 ATTATGAAAATATATA
1 A-TAT-AATATATATA
* *
100521056 ATACAATGTATATA
1 ATATAATATATATA
100521070 ATATAATATATA
1 ATATAATATATA
100521082 AAAAATATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
14 19 0.58
15 10 0.30
16 4 0.12
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (14 bp):
ATATAATATATATA
Found at i:100524048 original size:16 final size:16
Alignment explanation
Indices: 100524027--100524077 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
100524017 AAGAAAGAGC
100524027 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
100524043 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
100524059 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
100524075 AAA
1 AAA
100524078 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:100526623 original size:3 final size:3
Alignment explanation
Indices: 100526615--100526640 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
100526605 TAAATGCAAA
100526615 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
100526641 ATTACCAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:100528892 original size:39 final size:36
Alignment explanation
Indices: 100528795--100528895 Score: 98
Period size: 39 Copynumber: 2.7 Consensus size: 36
100528785 CAGATCATTA
* * *
100528795 ATATAAAAATATATATTATAAT-AACATAATTGTAT
1 ATATAAATATATATATTATAATCTACATAATTATAT
100528830 ATATAAATACT-TATCATTAATAATCTACAATAATTATAT
1 ATATAAATA-TATAT-ATT-ATAATCTAC-ATAATTATAT
*
100528869 AATACTAACTATATATATTATAATCTA
1 -ATA-TAAATATATATATTATAATCTA
100528896 TCCTAAAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
35 11 0.20
36 4 0.07
37 5 0.09
38 2 0.04
39 17 0.31
40 7 0.13
41 8 0.15
ACGTcount: A:0.50, C:0.08, G:0.01, T:0.41
Consensus pattern (36 bp):
ATATAAATATATATATTATAATCTACATAATTATAT
Found at i:100529156 original size:12 final size:12
Alignment explanation
Indices: 100529139--100529172 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
100529129 CGGCCCTCCC
100529139 ATATTAATTTTT
1 ATATTAATTTTT
*
100529151 ATATTATTTTTT
1 ATATTAATTTTT
100529163 ATA-TAATTTT
1 ATATTAATTTT
100529173 AAAATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:100529332 original size:30 final size:30
Alignment explanation
Indices: 100529296--100529358 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
100529286 ACTTAACAAG
*
100529296 CAAATGT-TTCTAAAATAATAACAAAATTAA
1 CAAATGTCTT-TAAAATAATAAAAAAATTAA
100529326 CAAATGTCTTTAAAATAATAAAAAAATTAA
1 CAAATGTCTTTAAAATAATAAAAAAATTAA
100529356 CAA
1 CAA
100529359 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGTCTTTAAAATAATAAAAAAATTAA
Found at i:100529423 original size:22 final size:22
Alignment explanation
Indices: 100529398--100529440 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
100529388 TATCCAAACA
100529398 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
100529420 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
100529441 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:100529444 original size:11 final size:11
Alignment explanation
Indices: 100529405--100529445 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
100529395 ACAATAACAA
100529405 CAAAATAGTAG
1 CAAAATAGTAG
* *
100529416 CAACATAATAG
1 CAAAATAGTAG
*
100529427 TAAAATAGTAG
1 CAAAATAGTAG
100529438 CAAAATAG
1 CAAAATAG
100529446 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:100534345 original size:19 final size:19
Alignment explanation
Indices: 100534308--100534347 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
100534298 TAAAAAATAT
*
100534308 AAATAATAAAAACTCATAA
1 AAATAATAAAAAATCATAA
* *
100534327 AAATTATAAAAAATTATAA
1 AAATAATAAAAAATCATAA
100534346 AA
1 AA
100534348 TACTCAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (19 bp):
AAATAATAAAAAATCATAA
Found at i:100534542 original size:19 final size:19
Alignment explanation
Indices: 100534508--100534570 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
100534498 TTGAAATATT
*
100534508 TAAAATTTTATACAAACTTA
1 TAAAATTCT-TACAAACTTA
100534528 TAAAATTCTTACAAACTTA
1 TAAAATTCTTACAAACTTA
100534547 TAAAATTCTTACAAACTTA
1 TAAAATTCTTACAAACTTA
100534566 TAAAA
1 TAAAA
100534571 ATTATTCAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
19 34 0.81
20 8 0.19
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAAATTCTTACAAACTTA
Found at i:100534580 original size:19 final size:19
Alignment explanation
Indices: 100534508--100534613 Score: 99
Period size: 19 Copynumber: 5.5 Consensus size: 19
100534498 TTGAAATATT
*
100534508 TAAAATTTTATACAAACTTA
1 TAAAATTAT-TACAAACTTA
*
100534528 TAAAATTCTTACAAACTTA
1 TAAAATTATTACAAACTTA
*
100534547 TAAAATTCTTACAAACTTA
1 TAAAATTATTACAAACTTA
**
100534566 TAAAAATTATT-CAAAAATA
1 T-AAAATTATTACAAACTTA
* *
100534585 TTAAAATTGA-TATAAACATA
1 -TAAAATT-ATTACAAACTTA
100534605 TAAAATTAT
1 TAAAATTAT
100534614 AAAAAAATCA
Statistics
Matches: 75, Mismatches: 6, Indels: 11
0.82 0.07 0.12
Matches are distributed among these distances:
18 1 0.01
19 50 0.67
20 24 0.32
ACGTcount: A:0.53, C:0.09, G:0.01, T:0.37
Consensus pattern (19 bp):
TAAAATTATTACAAACTTA
Found at i:100534590 original size:39 final size:38
Alignment explanation
Indices: 100534501--100534629 Score: 116
Period size: 39 Copynumber: 3.3 Consensus size: 38
100534491 AACATATTTG
* *
100534501 AAATATTTAAAATTTTATACAAACTTATAAAATTCTTACAA
1 AAATA-TTAAAATTCT-TACAAACTTATAAAATTATT-CAA
**
100534542 ACTTA-TAAAATTCTTACAAACTTATAAAAATTATTCAA
1 AAATATTAAAATTCTTACAAACTTAT-AAAATTATTCAA
** * * **
100534580 AAATATTAAAATTGATATAAACATATAAAATTATAAAA
1 AAATATTAAAATTCTTACAAACTTATAAAATTATTCAA
100534618 AAATCATTAAAA
1 AAAT-ATTAAAA
100534630 ATTATCTAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
38 31 0.42
39 39 0.53
41 3 0.04
ACGTcount: A:0.56, C:0.09, G:0.01, T:0.35
Consensus pattern (38 bp):
AAATATTAAAATTCTTACAAACTTATAAAATTATTCAA
Found at i:100534640 original size:39 final size:39
Alignment explanation
Indices: 100534559--100534643 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
100534549 AAATTCTTAC
* **
100534559 AAACTTATAAAAATTATTCAAAAATATTAAAATTGATAT
1 AAACATATAAAAATTATAAAAAAATATTAAAATTGATAT
*
100534598 AAACATAT-AAAATTATAAAAAAATCATTAAAAATT-ATCT
1 AAACATATAAAAATTATAAAAAAAT-ATT-AAAATTGATAT
100534637 AAACATA
1 AAACATA
100534644 GTCAGATTGG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
38 14 0.35
39 20 0.50
40 6 0.15
ACGTcount: A:0.60, C:0.07, G:0.01, T:0.32
Consensus pattern (39 bp):
AAACATATAAAAATTATAAAAAAATATTAAAATTGATAT
Found at i:100535220 original size:9 final size:9
Alignment explanation
Indices: 100535206--100535300 Score: 88
Period size: 9 Copynumber: 10.4 Consensus size: 9
100535196 TTTAAATCAC
100535206 TTTTTATAA
1 TTTTTATAA
100535215 TTTTTAT--
1 TTTTTATAA
100535222 TGTTTTATAA
1 T-TTTTATAA
*
100535232 TTTATTAGAA
1 TTT-TTATAA
100535242 TTTTTATAA
1 TTTTTATAA
*
100535251 TATTTATAA
1 TTTTTATAA
100535260 GTTTTTATAA
1 -TTTTTATAA
100535270 TTTTTA-AA
1 TTTTTATAA
* *
100535278 TTTGTGTCAA
1 TTTTTAT-AA
*
100535288 TTTTAATAA
1 TTTTTATAA
100535297 TTTT
1 TTTT
100535301 AAATATTTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
7 1 0.01
8 12 0.17
9 34 0.49
10 23 0.33
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:100535247 original size:36 final size:36
Alignment explanation
Indices: 100535206--100535280 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
100535196 TTTAAATCAC
* *
100535206 TTTTTATAATTTTTAT-TG-TTTTATAATTTATTAGAA
1 TTTTTATAATATTTATAAGTTTTTATAATTT-TTA-AA
100535242 TTTTTATAATATTTATAAGTTTTTATAATTTTTAAA
1 TTTTTATAATATTTATAAGTTTTTATAATTTTTAAA
100535278 TTT
1 TTT
100535281 GTGTCAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 20 0.57
37 4 0.11
38 11 0.31
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (36 bp):
TTTTTATAATATTTATAAGTTTTTATAATTTTTAAA
Found at i:100535248 original size:19 final size:17
Alignment explanation
Indices: 100535206--100535280 Score: 80
Period size: 19 Copynumber: 4.2 Consensus size: 17
100535196 TTTAAATCAC
*
100535206 TTTTTATAATTTTT-AT
1 TTTTTATAATTTTTAAA
100535222 TGTTTTATAATTTATTAGAA
1 T-TTTTATAATTT-TTA-AA
*
100535242 TTTTTATAATATTTATAAG
1 TTTTTATAAT-TTT-TAAA
100535261 TTTTTATAATTTTTAAA
1 TTTTTATAATTTTTAAA
100535278 TTT
1 TTT
100535281 GTGTCAATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
16 1 0.02
17 17 0.34
18 5 0.10
19 21 0.42
20 6 0.12
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (17 bp):
TTTTTATAATTTTTAAA
Found at i:100538145 original size:17 final size:18
Alignment explanation
Indices: 100538123--100538172 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
100538113 ATATAAACTT
100538123 TAAAAATT-T-TAAAAATA
1 TAAAAATTATATAAAAA-A
100538140 TAAAAATTATATAAAAAA
1 TAAAAATTATATAAAAAA
100538158 TAAAGAATATATATA
1 TAAA-AAT-TATATA
100538173 TATACATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.28
18 6 0.21
19 9 0.31
20 6 0.21
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
TAAAAATTATATAAAAAA
Found at i:100538155 original size:18 final size:18
Alignment explanation
Indices: 100538113--100538172 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 18
100538103 TTTGTTTCAA
* *
100538113 ATATAAACTTTAAAAATT
1 ATATAAAATATAAAAATT
*
100538131 TTA-AAAATATAAAAATT
1 ATATAAAATATAAAAATT
*
100538148 ATATAAAAAATAAAGAATAT
1 ATATAAAATATAAA-AAT-T
100538168 ATATA
1 ATATA
100538173 TATACATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
17 14 0.41
18 11 0.32
19 3 0.09
20 6 0.18
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (18 bp):
ATATAAAATATAAAAATT
Found at i:100538158 original size:20 final size:20
Alignment explanation
Indices: 100538133--100538172 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
100538123 TAAAAATTTT
100538133 AAAAATATAAAAAT-TATATA
1 AAAAATA-AAAAATATATATA
*
100538153 AAAAATAAAGAATATATATA
1 AAAAATAAAAAATATATATA
100538173 TATACATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (20 bp):
AAAAATAAAAAATATATATA
Found at i:100538455 original size:20 final size:20
Alignment explanation
Indices: 100538430--100538467 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
100538420 AATGACAAAA
100538430 CAGTCACTCAACTTTCAATT
1 CAGTCACTCAACTTTCAATT
100538450 CAGTCACTCAACTTTCAA
1 CAGTCACTCAACTTTCAA
100538468 AAAATAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (20 bp):
CAGTCACTCAACTTTCAATT
Found at i:100539573 original size:38 final size:38
Alignment explanation
Indices: 100539528--100539601 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
100539518 ATAACAGAAA
*
100539528 ATGTTAATGAGTGACTGATTTGTAACTTTTTGATAACG
1 ATGTTAATGAGTGACTGATTTGTAACTTTTCGATAACG
* *
100539566 ATGTTAATGGGTGACTGATTTGTCACTTTTCGATAA
1 ATGTTAATGAGTGACTGATTTGTAACTTTTCGATAA
100539602 TGTTAGTGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.42
Consensus pattern (38 bp):
ATGTTAATGAGTGACTGATTTGTAACTTTTCGATAACG
Found at i:100542486 original size:16 final size:16
Alignment explanation
Indices: 100542461--100542494 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
100542451 AGGAATATAT
* *
100542461 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
100542477 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
100542493 AT
1 AT
100542495 AGGATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:100543081 original size:21 final size:21
Alignment explanation
Indices: 100543057--100543097 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
100543047 ATATGAGAAA
* * *
100543057 TTACGTATGTTATGGTTAAAC
1 TTACCTATATTATGGATAAAC
100543078 TTACCTATATTATGGATAAA
1 TTACCTATATTATGGATAAA
100543098 TATATTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (21 bp):
TTACCTATATTATGGATAAAC
Found at i:100544125 original size:10 final size:10
Alignment explanation
Indices: 100544106--100544147 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
100544096 TTCTCAATTT
100544106 ATCA-ACCAA
1 ATCATACCAA
100544115 ATCATACCAA
1 ATCATACCAA
*
100544125 ATCTAAACCAAA
1 ATC-ATACC-AA
100544137 ATCATACCAA
1 ATCATACCAA
100544147 A
1 A
100544148 GTATATGATC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 11 0.39
11 8 0.29
12 5 0.18
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:100544622 original size:17 final size:17
Alignment explanation
Indices: 100544600--100544634 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
100544590 ACTACTCAAC
100544600 CTCATTT-ATTACCATTT
1 CTCATTTCA-TACCATTT
100544617 CTCATTTCATACCATTT
1 CTCATTTCATACCATTT
100544634 C
1 C
100544635 CTTAGTTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.49
Consensus pattern (17 bp):
CTCATTTCATACCATTT
Found at i:100544975 original size:40 final size:39
Alignment explanation
Indices: 100544916--100545006 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 39
100544906 TCAGTATCGT
* ** *
100544916 ACACTTAGTGCCACATATAGCCGAAGCTATTCCAATTCAC
1 ACACTTAGTGCTATTTATAGCCGAAGCTATTCCAA-CCAC
* *
100544956 ACATTTAGTGCTATTTATAGCCGAAGCTATTTCAACCAC
1 ACACTTAGTGCTATTTATAGCCGAAGCTATTCCAACCAC
100544995 ACACTTAGTGCT
1 ACACTTAGTGCT
100545007 GAACATATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 14 0.32
40 30 0.68
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (39 bp):
ACACTTAGTGCTATTTATAGCCGAAGCTATTCCAACCAC
Found at i:100549905 original size:18 final size:18
Alignment explanation
Indices: 100549849--100549905 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
100549839 TCCTTTTATA
* *
100549849 TTTCTTATTTCTTT-GATT
1 TTTCTTATTT-TTTCCATC
* *
100549867 TTTCTTTTTTTTTCCTTTC
1 TTTCTTATTTTTTCC-ATC
100549886 TTTCTTATTTTTTCCATC
1 TTTCTTATTTTTTCCATC
100549904 TT
1 TT
100549906 CTCCTTTCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 3 0.10
18 13 0.42
19 15 0.48
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTCTTATTTTTTCCATC
Found at i:100551182 original size:17 final size:18
Alignment explanation
Indices: 100551156--100551190 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
100551146 AAAACATATT
*
100551156 TAATTAAAATTTAAAATA
1 TAATTAAAATTGAAAATA
100551174 TAATT-AAATTGAAAATA
1 TAATTAAAATTGAAAATA
100551191 AACATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
TAATTAAAATTGAAAATA
Found at i:100554055 original size:20 final size:20
Alignment explanation
Indices: 100554013--100554075 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 20
100554003 AACATTCAGG
* *
100554013 AAAATTTCTAAAAATA-TACA
1 AAAATTT-TAAAAAAATTATA
100554033 AAAATTTTAAAAAAATTATAA
1 AAAATTTTAAAAAAATTAT-A
*
100554054 AATACATTTAAAAAAAATTATA
1 AA-A-ATTTTAAAAAAATTATA
100554076 TTGTTATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 7 0.19
20 9 0.25
21 3 0.08
22 2 0.06
23 15 0.42
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAATTTTAAAAAAATTATA
Found at i:100554109 original size:16 final size:17
Alignment explanation
Indices: 100554088--100554121 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
100554078 GTTATTTTTG
*
100554088 AAATTA-TAAAAATATA
1 AAATTACTAAAAAAATA
100554104 AAATTACTAAAAAAATA
1 AAATTACTAAAAAAATA
100554121 A
1 A
100554122 GAATAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATTACTAAAAAAATA
Found at i:100557284 original size:96 final size:96
Alignment explanation
Indices: 100557120--100557313 Score: 271
Period size: 96 Copynumber: 2.0 Consensus size: 96
100557110 GTGTCCGAGG
* * * * *
100557120 AAGTCTTTCATCAACGAGAATGATGGAGTAGACAAGGAGCCCAAGAAGCTTGGTTCAAGCAAGGG
1 AAGTCTGTCATCAAAGAGAATGATGGAGCAAACAAGGAGCCCAAAAAGCTTGGTTCAAGCAAGGG
*
100557185 AAAAGTCAAAGCCAAAAGGGCAAAGAGGAGC
66 AAAAGCCAAAGCCAAAAGGGCAAAGAGGAGC
* * * **
100557216 AAGTCTGTCATCAAAGGGAATGATGGAGCAAACAATGAGCCCAAAAAGCTTGGTTTAAGTGAGGG
1 AAGTCTGTCATCAAAGAGAATGATGGAGCAAACAAGGAGCCCAAAAAGCTTGGTTCAAGCAAGGG
* *
100557281 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 AAAAGCCAAAGCCAAAAGGGCAAAGAGGAGC
100557312 AA
1 AA
100557314 AAAGAAGTGA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 85 1.00
ACGTcount: A:0.41, C:0.16, G:0.30, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCAAAGAGAATGATGGAGCAAACAAGGAGCCCAAAAAGCTTGGTTCAAGCAAGGG
AAAAGCCAAAGCCAAAAGGGCAAAGAGGAGC
Found at i:100558992 original size:22 final size:24
Alignment explanation
Indices: 100558946--100558995 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 24
100558936 CAACTATTAC
* *
100558946 ATTTTCTTTAAAATTGATTTTATA
1 ATTTTCTTTAAAACTGACTTTATA
100558970 ATTTT-TTTAAAACTG-CTTTATA
1 ATTTTCTTTAAAACTGACTTTATA
100558992 ATTT
1 ATTT
100558996 AACTTATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.42
23 9 0.38
24 5 0.21
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
ATTTTCTTTAAAACTGACTTTATA
Found at i:100559832 original size:12 final size:13
Alignment explanation
Indices: 100559799--100559845 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
100559789 AAATAGAAGA
100559799 TATTATTT-TGTTT
1 TATTATTTAT-TTT
100559812 TATTATTTATTTT
1 TATTATTTATTTT
100559825 TATT-TTTA-TTT
1 TATTATTTATTTT
100559836 TATTAATTTA
1 TATT-ATTTA
100559846 GGATAGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 7 0.23
12 4 0.13
13 19 0.61
14 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (13 bp):
TATTATTTATTTT
Found at i:100561144 original size:47 final size:47
Alignment explanation
Indices: 100561059--100561171 Score: 131
Period size: 47 Copynumber: 2.4 Consensus size: 47
100561049 GGAGTCAAGG
* * *
100561059 TCCAATTAAATAAATAAAACAGAAATCTACACACATGGGTG-CAGAGT
1 TCCATTTAAATAAATAAAGCAGAAATATACACACATGGGTGTC-GAGT
* *
100561106 TCCATTTAAATAAATAAAGCAGAACTATATACTA-ATGGGTGTCGAGT
1 TCCATTTAAATAAATAAAGCAGAAATATACAC-ACATGGGTGTCGAGT
* *
100561153 TTCATTTAAATAAAGAAAG
1 TCCATTTAAATAAATAAAG
100561172 AAAGATTCTA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
47 55 0.96
48 2 0.04
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (47 bp):
TCCATTTAAATAAATAAAGCAGAAATATACACACATGGGTGTCGAGT
Found at i:100564451 original size:3 final size:3
Alignment explanation
Indices: 100564443--100564468 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
100564433 TTAGGTTGCT
100564443 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
100564469 TATTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:100572516 original size:40 final size:40
Alignment explanation
Indices: 100572466--100572865 Score: 376
Period size: 41 Copynumber: 10.1 Consensus size: 40
100572456 GCAAAAATTT
* * * *
100572466 TAAAATACAGAGCAATAGCGGCGTTTTAAGAAAAACGCCGC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
* * * *
100572507 TAAAAACAGAGCAATAGCGGCGTTTTTTA-CTAAAACGCCTC
1 TAAAAACAGAGCATTAGCGGCG--CTTTAGGTAAAACGCCGC
* * * *
100572548 TAAAAACTGATCATTAGCGGTGCTTTAGGTAAAACGCCAC
1 TAAAAACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
* **
100572588 TAAAAACCAGATCATTAGCGGCGCTTCGGGTAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
* **
100572629 TAAAAACCAGAGCACTAGCGGCGCTTCGGGTAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
*
100572670 TAAAAAACAGAGCATTAGCGGCGC-TT-GCT---A------
1 T-AAAAACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
* * * * *
100572700 -AAAAACAGATCATTAACAGCGCTTTGGGTAAAACGCCAC
1 TAAAAACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
*
100572739 TAAAAACAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
* * *
100572779 TAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAATGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
*
100572820 TAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
100572861 TAAAA
1 TAAAA
100572866 GTCATAGAAC
Statistics
Matches: 308, Mismatches: 33, Indels: 36
0.82 0.09 0.10
Matches are distributed among these distances:
28 19 0.06
29 2 0.01
30 2 0.01
33 1 0.00
36 1 0.00
39 6 0.02
40 74 0.24
41 193 0.63
42 10 0.03
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGC
Found at i:100572708 original size:28 final size:28
Alignment explanation
Indices: 100572668--100572723 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
100572658 GTAAAACGCC
* *
100572668 GCTAAAAAACAGAGCATTAGCGGCGCTT
1 GCTAAAAAACAGAGCATTAACAGCGCTT
*
100572696 GCTAAAAAACAGATCATTAACAGCGCTT
1 GCTAAAAAACAGAGCATTAACAGCGCTT
100572724 TGGGTAAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (28 bp):
GCTAAAAAACAGAGCATTAACAGCGCTT
Found at i:100572796 original size:109 final size:110
Alignment explanation
Indices: 100572587--100572804 Score: 350
Period size: 109 Copynumber: 2.0 Consensus size: 110
100572577 TAAAACGCCA
* * * *
100572587 CTAAAAACCAGATCATTAGCGGCGCTTCGGGTAAAACGCCGCTAAAAACCAGAGCACTAGCGGCG
1 CTAAAAAACAGATCATTAACAGCGCTTCGGGTAAAACGCCACTAAAAACCAGAGCACTAGCGGCG
100572652 CTTCGGGTAAAACGCCGCTAAAAAACAGAGCATTAGCGGCGCTTG
66 CTTCGGGTAAAACGCCGCTAAAAAACAGAGCATTAGCGGCGCTTG
* *
100572697 CTAAAAAACAGATCATTAACAGCGCTTTGGGTAAAACGCCACTAAAAA-CAGAGCATTAGCGGCG
1 CTAAAAAACAGATCATTAACAGCGCTTCGGGTAAAACGCCACTAAAAACCAGAGCACTAGCGGCG
*
100572761 CTTTC-GGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTT
66 C-TTCGGGTAAAACGCCGCTAAAAAACAGAGCATTAGCGGCGCTT
100572805 TCGATAAAAT
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
109 54 0.54
110 46 0.46
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.17
Consensus pattern (110 bp):
CTAAAAAACAGATCATTAACAGCGCTTCGGGTAAAACGCCACTAAAAACCAGAGCACTAGCGGCG
CTTCGGGTAAAACGCCGCTAAAAAACAGAGCATTAGCGGCGCTTG
Found at i:100572798 original size:150 final size:151
Alignment explanation
Indices: 100572549--100572845 Score: 465
Period size: 150 Copynumber: 2.0 Consensus size: 151
100572539 AAACGCCTCT
* * * * *
100572549 AAAAACTGATCATTAGCGGTGCTTTAGGTAAAACGCCACTAAAAACCAGATCATTAGCGGCGCTT
1 AAAAACAGATCATTAACAGCGCTTTAGGTAAAACGCCACTAAAAACCAGAGCATTAGCGGCGCTT
*
100572614 CGGGTAAAACGCCGCTAAAAACCAGAGCACTAGCGGCGC-TTCGGGTAAAACGCCGCTAAAAAAC
66 CGGGTAAAACGCCGCTAAAAACCAGAGCACTAGCGGCGCTTTC-GATAAAACGCCGCTAAAAAAC
100572678 AGAGCATTAGCGGCGCTTGCTA
130 AGAGCATTAGCGGCGCTTGCTA
*
100572700 AAAAACAGATCATTAACAGCGCTTTGGGTAAAACGCCACTAAAAA-CAGAGCATTAGCGGCGCTT
1 AAAAACAGATCATTAACAGCGCTTTAGGTAAAACGCCACTAAAAACCAGAGCATTAGCGGCGC-T
* * *
100572764 TC-GGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAATGCCGCTAAAAACC
65 TCGGGTAAAACGCCGCTAAAAACCAGAGCACTAGCGGCGCTTTCGATAAAACGCCGCTAAAAAAC
100572828 AGAGCATTAGCGGCGCTT
130 AGAGCATTAGCGGCGCTT
100572846 TCGGTAAAAC
Statistics
Matches: 134, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
150 88 0.66
151 46 0.34
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (151 bp):
AAAAACAGATCATTAACAGCGCTTTAGGTAAAACGCCACTAAAAACCAGAGCATTAGCGGCGCTT
CGGGTAAAACGCCGCTAAAAACCAGAGCACTAGCGGCGCTTTCGATAAAACGCCGCTAAAAAACA
GAGCATTAGCGGCGCTTGCTA
Found at i:100577109 original size:133 final size:133
Alignment explanation
Indices: 100576871--100577255 Score: 725
Period size: 133 Copynumber: 2.9 Consensus size: 133
100576861 TGGTGATTCC
100576871 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
100576936 TGGACTTAGATTGATTTAAGAGTTTATTGATGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGATGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
100577001 TAT
131 TAT
100577004 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
*
100577069 TGGACTTAGATTGATTTAAGAGTTTATTGTTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGATGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
100577134 TAT
131 TAT
* * *
100577137 ATTTTGGTTATTTAGATGTTCTTTTGGTCTATTTTCATGTTTCTATCCAATTTATGTGTTCAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
*
100577202 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
66 TGGACTTAGATTGATTTAAGAGTTTATTGATGTCTTGTTGCTCACGTTTTATAT
100577256 TGTTGAATTC
Statistics
Matches: 247, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 247 1.00
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.52
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGATGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:100577176 original size:21 final size:20
Alignment explanation
Indices: 100577138--100577177 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
100577128 AATTGTTATA
*
100577138 TTTTGGTTATTTAGATGTTC
1 TTTTGGTTATTTACATGTTC
*
100577158 TTTTGGTCTATTTTCATGTT
1 TTTTGGT-TATTTACATGTT
100577178 TCTATCCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.12, C:0.07, G:0.17, T:0.62
Consensus pattern (20 bp):
TTTTGGTTATTTACATGTTC
Found at i:100579232 original size:21 final size:21
Alignment explanation
Indices: 100579203--100579242 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
100579193 GTTTTTATAT
*
100579203 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
100579224 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
100579243 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:100585782 original size:45 final size:45
Alignment explanation
Indices: 100585732--100585833 Score: 145
Period size: 44 Copynumber: 2.3 Consensus size: 45
100585722 CTGGGCAAAT
*
100585732 TAGCGGCGTTTTTTTTTA-AAAAGCGCCGCTAATGTTCTTGGTCTA
1 TAGCGGCG-TTTTTTTTACAAAAGCGCCGCTAAAGTTCTTGGTCTA
*
100585777 TAGCGGCG-TTTTTTTACTAAAGCGCCGCTAAAGTTCTTGGTCTA
1 TAGCGGCGTTTTTTTTACAAAAGCGCCGCTAAAGTTCTTGGTCTA
* *
100585821 TAGCTGCGCTTTT
1 TAGCGGCGTTTTT
100585834 GTAAAAAACG
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
43 8 0.15
44 32 0.62
45 12 0.23
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.39
Consensus pattern (45 bp):
TAGCGGCGTTTTTTTTACAAAAGCGCCGCTAAAGTTCTTGGTCTA
Found at i:100585802 original size:44 final size:43
Alignment explanation
Indices: 100585732--100585960 Score: 169
Period size: 43 Copynumber: 5.3 Consensus size: 43
100585722 CTGGGCAAAT
*
100585732 TAGCGGCGTTTTTTTTTAAAAAGCGCCGCTAATGTTCTTGGTCTA
1 TAGCGGCG--TTTTTTTAAAAAGCGCCGCTAAAGTTCTTGGTCTA
*
100585777 TAGCGGCGTTTTTTTACTAAAGCGCCGCTAAAGTTCTTGGTCTA
1 TAGCGGCGTTTTTTTA-AAAAGCGCCGCTAAAGTTCTTGGTCTA
* * * * * * * * *
100585821 TAGCTGCGCTTTTGTAAAAAACGCCGCCAAAG-ACCTGGACCTT
1 TAGCGGCGTTTTTTTAAAAAGCGCCGCTAAAGTTCTTGG-TCTA
* * * * *
100585864 TAGCGGCGCTTTTATAAAAAACGCCGCTAAAAG-TCCTGGTCTT
1 TAGCGGCGTTTTTTTAAAAAGCGCCGCT-AAAGTTCTTGGTCTA
* * * * * * *
100585907 TGGCAGCG-TCTTTT-AAGAGCGCCGCTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTTAAAAAGCGCCGCTAAAGTTCTTGGTCTA
*
100585948 TAGCGGCGCTTTT
1 TAGCGGCGTTTTT
100585961 AAAAAAACGC
Statistics
Matches: 153, Mismatches: 26, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
40 4 0.03
41 26 0.17
42 11 0.07
43 57 0.37
44 47 0.31
45 8 0.05
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.32
Consensus pattern (43 bp):
TAGCGGCGTTTTTTTAAAAAGCGCCGCTAAAGTTCTTGGTCTA
Found at i:100585941 original size:41 final size:40
Alignment explanation
Indices: 100585885--100585962 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 40
100585875 TTATAAAAAA
*
100585885 CGCCGCTAAAAGTCCTGGTCTTTGGCAGCGTCTTTTAAGAG
1 CGCCGCTAAAAGTCCTGGTCTTTAGCAGCG-CTTTTAAGAG
* *
100585926 CGCCGCTAAAGGTCCTGGTCTTTAGCGGCGCTTTTAA
1 CGCCGCTAAAAGTCCTGGTCTTTAGCAGCGCTTTTAA
100585963 AAAAACGCCG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 7 0.21
41 27 0.79
ACGTcount: A:0.18, C:0.26, G:0.27, T:0.29
Consensus pattern (40 bp):
CGCCGCTAAAAGTCCTGGTCTTTAGCAGCGCTTTTAAGAG
Found at i:100587816 original size:5 final size:5
Alignment explanation
Indices: 100587777--100587813 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
100587767 TTTAACTCTT
*
100587777 AATTA AATTA AATTA AATTA AATTA AATTA AACTA AA
1 AATTA AATTA AATTA AATTA AATTA AATTA AATTA AA
100587814 CTACCAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (5 bp):
AATTA
Found at i:100591050 original size:43 final size:43
Alignment explanation
Indices: 100590955--100591054 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
100590945 CGCTTGTGGG
* **
100590955 AAAAGCGCCGCTAAAAGTCACGTCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCACGTCTTTTAACGGCGTTTGTGCC
* *
100590998 AAAAGCGCCGCTAAAAGTCACGTCTTTTAATGGCGCTTT-TTCC
1 AAAAGCGCCGCTAAAAGTCACGTCTTTTAACGGCG-TTTGTGCC
100591041 ACAAA-CGCCGCTAA
1 A-AAAGCGCCGCTAA
100591055 TTTTAGCAGA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
43 44 0.88
44 6 0.12
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCACGTCTTTTAACGGCGTTTGTGCC
Found at i:100597041 original size:9 final size:9
Alignment explanation
Indices: 100597027--100597154 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
100597017 ATGTATTAGT
100597027 TAAGTTATG
1 TAAGTTATG
100597036 TAAGTTGTTATG
1 TAA---GTTATG
*
100597048 TACGTTATG
1 TAAGTTATG
*
100597057 TGAGTTATG
1 TAAGTTATG
*
100597066 TAAATTATG
1 TAAGTTATG
100597075 TAAGTTATG
1 TAAGTTATG
*
100597084 TGAGTTATG
1 TAAGTTATG
100597093 TAAGTTGCTATG
1 TAAG-T--TATG
*
100597105 TAAATTATG
1 TAAGTTATG
*
100597114 TAAGTTATA
1 TAAGTTATG
*
100597123 TGAGTTATG
1 TAAGTTATG
100597132 TAAGTTATG
1 TAAGTTATG
* *
100597141 TAATTTATT
1 TAAGTTATG
100597150 TAAGT
1 TAAGT
100597155 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
10 1 0.01
11 1 0.01
12 15 0.16
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:100597154 original size:57 final size:57
Alignment explanation
Indices: 100597027--100597154 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 57
100597017 ATGTATTAGT
* ** * *
100597027 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGCTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
100597084 TGAGTTATGTAAGTTGCTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGCTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
100597141 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
100597155 AATGATCAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGCTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:100598686 original size:64 final size:64
Alignment explanation
Indices: 100598315--100598676 Score: 642
Period size: 64 Copynumber: 5.7 Consensus size: 64
100598305 GATTTTATTG
*
100598315 ATATTATATTAATAAATAAATTTATT-AAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
*
100598378 ATATTATATTAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGAT---AC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
* *
100598439 ATATTATATTAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGAGAC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
*
100598503 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTATATATTAGATGGGAC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
100598567 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
*
100598631 ATATTATATCAATAAATAAATTTATTAAAAATTGTGATAGAAATAT
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATAT
100598677 AGAAATATTA
Statistics
Matches: 290, Mismatches: 5, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
61 61 0.21
63 26 0.09
64 203 0.70
ACGTcount: A:0.47, C:0.04, G:0.10, T:0.39
Consensus pattern (64 bp):
ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
Found at i:100602054 original size:80 final size:80
Alignment explanation
Indices: 100601955--100602137 Score: 242
Period size: 80 Copynumber: 2.3 Consensus size: 80
100601945 ACCCTTAACC
* * * **
100601955 CATGTCCCCTTAATCCCTAAACTCC-TAAACCCTAAACTATTAACCCTTAATCCCTAAAATTTGG
1 CATGTCCCCTTAACCCCTAAAC-CCTTAAACCCTAAACCATAAACCCTTAATCCCTAAAATTTAA
100602019 ACACTAAACCCTAAAT
65 ACACTAAACCCTAAAT
* * * *
100602035 CATGTCCCATTAACCCCTAAACCCTTGAACCTTAAACCATAAACCCTTAATCCCTAAACTTTAAA
1 CATGTCCCCTTAACCCCTAAACCCTTAAACCCTAAACCATAAACCCTTAATCCCTAAAATTTAAA
*
100602100 CACTAATCCCTAAAT
66 CACTAAACCCTAAAT
* *
100602115 GATATCCCCTTAACCCCTAAACC
1 CATGTCCCCTTAACCCCTAAACC
100602138 TTCAACCTTT
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
79 2 0.02
80 87 0.98
ACGTcount: A:0.36, C:0.34, G:0.03, T:0.26
Consensus pattern (80 bp):
CATGTCCCCTTAACCCCTAAACCCTTAAACCCTAAACCATAAACCCTTAATCCCTAAAATTTAAA
CACTAAACCCTAAAT
Found at i:100602092 original size:22 final size:22
Alignment explanation
Indices: 100602052--100602137 Score: 68
Period size: 22 Copynumber: 4.0 Consensus size: 22
100602042 CATTAACCCC
*
100602052 TAAACCCTTGAA-CCTTAAACCA
1 TAAACCCTT-AATCCCTAAACCA
**
100602074 TAAACCCTTAATCCCTAAACTT
1 TAAACCCTTAATCCCTAAACCA
* **
100602096 TAAACAC-TAATCCCTAAATGA
1 TAAACCCTTAATCCCTAAACCA
** *
100602117 TATCCCCTTAACCCCTAAACC
1 TAAACCCTTAATCCCTAAACC
100602138 TTCAACCTTT
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
21 17 0.35
22 32 0.65
ACGTcount: A:0.38, C:0.34, G:0.02, T:0.26
Consensus pattern (22 bp):
TAAACCCTTAATCCCTAAACCA
Found at i:100602139 original size:14 final size:14
Alignment explanation
Indices: 100602122--100602178 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
100602112 AATGATATCC
100602122 CCTTAACCCCTAAA
1 CCTTAACCCCTAAA
**
100602136 CCTTCAACCTTTAAA
1 CCTT-AACCCCTAAA
*
100602151 TCTTAACCCCTAAA
1 CCTTAACCCCTAAA
*
100602165 -CTATAAACCCTAAA
1 CCT-TAACCCCTAAA
100602179 TCCCTAAACC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
13 2 0.06
14 22 0.63
15 11 0.31
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (14 bp):
CCTTAACCCCTAAA
Found at i:100602380 original size:16 final size:14
Alignment explanation
Indices: 100602349--100602386 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 14
100602339 ATAATCCATA
100602349 TAAACCATAAACCC
1 TAAACCATAAACCC
100602363 TAAACCATATATACCC
1 TAAACCATA-A-ACCC
100602379 TAAACCAT
1 TAAACCAT
100602387 GCATAAACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 9 0.41
15 1 0.05
16 12 0.55
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:100602638 original size:14 final size:14
Alignment explanation
Indices: 100602619--100602672 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
100602609 GTGTCATTAA
100602619 TTTAGGGTTTATAG
1 TTTAGGGTTTATAG
*
100602633 TTTAGGGTTT-TAAA
1 TTTAGGGTTTAT-AG
* *
100602647 TTTAAGGTCTATAG
1 TTTAGGGTTTATAG
100602661 TTTATGGGTTTA
1 TTTA-GGGTTTA
100602673 GGGGTTAAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
13 1 0.03
14 24 0.77
15 6 0.19
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.50
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:100602659 original size:28 final size:29
Alignment explanation
Indices: 100602617--100602671 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
100602607 ATGTGTCATT
* *
100602617 AATTTAGGGTTTATAGTTTA-GGGTTTTA
1 AATTTAAGGTCTATAGTTTATGGGTTTTA
100602645 AATTTAAGGTCTATAGTTTATGGGTTT
1 AATTTAAGGTCTATAGTTTATGGGTTT
100602672 AGGGGTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.25, C:0.02, G:0.24, T:0.49
Consensus pattern (29 bp):
AATTTAAGGTCTATAGTTTATGGGTTTTA
Found at i:100603329 original size:40 final size:41
Alignment explanation
Indices: 100603195--100603352 Score: 167
Period size: 43 Copynumber: 3.8 Consensus size: 41
100603185 AATAGTTTAT
* *
100603195 ATCTATAGCGGTGTTTTTCCAAAAAGCGCCGCTAAAACTCAA
1 ATCTATAGCGGCGTTTTT-GAAAAAGCGCCGCTAAAACTCAA
* * * * *
100603237 ATCTATTGCGGCGTTTTTTTATAAAAACGCCACTAAAACCCAA
1 ATCTATAGCGGCG-TTTTTGA-AAAAGCGCCGCTAAAACTCAA
*
100603280 ATCCT-TAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTC-A
1 AT-CTATAGCGGCGTTTTTGAAAAAGCGCCGCTAAAACTCAA
* **
100603320 ATCTATAGCGGCATTTTTGAGGAAGCGCCGCTA
1 ATCTATAGCGGCGTTTTTGAAAAAGCGCCGCTA
100603353 TTGCCACTAA
Statistics
Matches: 97, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 28 0.29
41 15 0.15
42 18 0.19
43 32 0.33
44 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (41 bp):
ATCTATAGCGGCGTTTTTGAAAAAGCGCCGCTAAAACTCAA
Found at i:100603467 original size:154 final size:139
Alignment explanation
Indices: 100603373--100603630 Score: 356
Period size: 140 Copynumber: 1.8 Consensus size: 139
100603363 AGCTCAGAAT
* * *
100603373 AAACGACGCCGTTCGGCTTAATCTTTTAGAGGCGTTTTTGTACAAACGCCGCTATA-AGTCGACC
1 AAAC-ACG-CGTTCGGCTTAATC-TTTAGAGGCGTTTTTATAAAAACGCCGCTATAGA-TAGACC
* * *
100603437 TATAGCGGCGCTTCCTTAAAAACGCCGCTAATACTCAAACCTATAGCAGCGTTTTGGTGAAGCGC
62 TATAGCGGCGCTTCCGTAAAAACGCCGCTAATACTC-AATCTATAGCGGCGTTTTGGTGAAGCGC
100603502 CGCTATTGCCACCG
126 CGCTATTGCCACCG
* * *
100603516 AAGCTCGCGTTCGGCTTAATCTTTAGTGGCGTTTTTATAAAAACGCCGCTATAGATAGACCTATA
1 AAACACGCGTTCGGCTTAATCTTTAGAGGCGTTTTTATAAAAACGCCGCTATAGATAGACCTATA
* * *
100603581 GCGGCGCTTTCGTAAAAATGCCGCTAATACTCAATCTATAGCGGTGTTTT
66 GCGGCGCTTCCGTAAAAACGCCGCTAATACTCAATCTATAGCGGCGTTTT
100603631 TTCAAAAACG
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
139 15 0.15
140 67 0.66
141 15 0.15
142 2 0.02
143 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (139 bp):
AAACACGCGTTCGGCTTAATCTTTAGAGGCGTTTTTATAAAAACGCCGCTATAGATAGACCTATA
GCGGCGCTTCCGTAAAAACGCCGCTAATACTCAATCTATAGCGGCGTTTTGGTGAAGCGCCGCTA
TTGCCACCG
Found at i:100604772 original size:64 final size:64
Alignment explanation
Indices: 100604699--100605060 Score: 642
Period size: 64 Copynumber: 5.7 Consensus size: 64
100604689 TAATATTTCT
* *
100604699 ATATTTCTATCACAATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
* *
100604763 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATATAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
* *
100604827 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
100604891 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGT---ATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
100604952 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
100605016 ATATTTCTATCACGA-TTTTAATAAATTTATTTATTAATATAATAT
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATAT
100605061 CAATAAAATC
Statistics
Matches: 290, Mismatches: 5, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
61 61 0.21
63 30 0.10
64 199 0.69
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
Found at i:100605022 original size:189 final size:189
Alignment explanation
Indices: 100604699--100605060 Score: 645
Period size: 189 Copynumber: 1.9 Consensus size: 189
100604689 TAATATTTCT
*
100604699 ATATTTCTATCACAATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAA
1 ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATGT--CATCTAATATACAAA
* *
100604764 TATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATATAAAT
64 TATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAAT
*
100604829 ATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATACAA
129 ATTTCTATCACGA-TTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
*
100604891 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGT-ATCTAATATACAAATA
1 ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATGTCATCTAATATACAAATA
100604955 TTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
66 TTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
100605020 TTCTATCACGATTTTAATAAATTTATTTATTAATATAATAT
131 TTCTATCACGATTTTAATAAATTTATTTATTAATATAATAT
100605061 CAATAAAATC
Statistics
Matches: 165, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
188 29 0.18
189 90 0.55
192 46 0.28
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (189 bp):
ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATGTCATCTAATATACAAATA
TTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
TTCTATCACGATTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
Found at i:100606245 original size:9 final size:9
Alignment explanation
Indices: 100606222--100606349 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
100606212 ATTGATCATT
*
100606222 ACTTAAATA
1 ACTTACATA
*
100606231 AATTACATA
1 ACTTACATA
100606240 ACTTACATA
1 ACTTACATA
* *
100606249 ACTCATATA
1 ACTTACATA
100606258 ACTTACATA
1 ACTTACATA
*
100606267 ATTTACATAGCA
1 ACTTACAT---A
100606279 ACTTACATA
1 ACTTACATA
*
100606288 ACTCACATA
1 ACTTACATA
100606297 ACTTACATA
1 ACTTACATA
*
100606306 ATTTACATA
1 ACTTACATA
*
100606315 ACTCACATA
1 ACTTACATA
*
100606324 ACGTACATAACA
1 ACTTACAT---A
100606336 ACTTACATA
1 ACTTACATA
100606345 ACTTA
1 ACTTA
100606350 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:100606289 original size:39 final size:39
Alignment explanation
Indices: 100606239--100606314 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
100606229 TAAATTACAT
*
100606239 AACTTACATAACTCATATAACTTACATAATTTACATAGC
1 AACTTACATAACTCACATAACTTACATAATTTACATAGC
100606278 AACTTACATAACTCACATAACTTACATAATTTACATA
1 AACTTACATAACTCACATAACTTACATAATTTACATA
100606315 ACTCACATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.33
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAGC
Found at i:100606316 original size:57 final size:57
Alignment explanation
Indices: 100606235--100606347 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
100606225 TAAATAAATT
* * ** *
100606235 ACATAACTTACATAACTCATATAACTTACATAATTTACATAGCAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
100606292 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
100606348 TAACTAATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:100612168 original size:537 final size:537
Alignment explanation
Indices: 100611155--100612237 Score: 2157
Period size: 537 Copynumber: 2.0 Consensus size: 537
100611145 ATAGAATTCC
*
100611155 TTAAGAATTCTCAAATGGGAGAAGAGAGAAACCTAAGAGAGAAAGACTGGTTGGGATGGTGTAAA
1 TTAAGAATTCTCAAATGGGAGAAGAGAGAAACCTAAGAGAGAAAGACTGGGTGGGATGGTGTAAA
100611220 TGAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAGGGACTAACTTGCAAATGGCCTAAAAAAT
66 TGAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAGGGACTAACTTGCAAATGGCCTAAAAAAT
100611285 TAGGGACCAAAATTACAATTATCCCATTCAACTTTAAACAACTTGCCTACCATTTTTTTCTTTCG
131 TAGGGACCAAAATTACAATTATCCCATTCAACTTTAAACAACTTGCCTACCATTTTTTTCTTTCG
100611350 GTGCCACTTGCACCTCCTATTTTTTGACTTTTCAACACCCCTTTTAATTTGTCTTTTCAACATTA
196 GTGCCACTTGCACCTCCTATTTTTTGACTTTTCAACACCCCTTTTAATTTGTCTTTTCAACATTA
100611415 ATTTCATGTACAATAATTACTGTTTTATTAAGTTACTATTAGATTAAATAATAATAATATCTTTT
261 ATTTCATGTACAATAATTACTGTTTTATTAAGTTACTATTAGATTAAATAATAATAATATCTTTT
100611480 GTTAATATTTTTTTATTCAAAACCATACTCAGTGGAGCAAAATGGAGACGAAAACTTGCTAAATT
326 GTTAATATTTTTTTATTCAAAACCATACTCAGTGGAGCAAAATGGAGACGAAAACTTGCTAAATT
100611545 GCATGCTAAATCAGTGAAATACTTGCTTGAATTCATCAAACTTTGCTCTTTTTCTTGTTGAACCG
391 GCATGCTAAATCAGTGAAATACTTGCTTGAATTCATCAAACTTTGCTCTTTTTCTTGTTGAACCG
100611610 ATTCGCTTTTGTTGGAGTTCTCAAGTCATCGTTGGATCAGTATTCAAATTTGCAGAGAATATAAT
456 ATTCGCTTTTGTTGGAGTTCTCAAGTCATCGTTGGATCAGTATTCAAATTTGCAGAGAATATAAT
100611675 AATAGTATTTGTTTACA
521 AATAGTATTTGTTTACA
100611692 TTAAGAATTCTCAAATGGGAGAAGAGAGAAACCTAAGAGAGAAAGACTGGGTGGGATGGTGTAAA
1 TTAAGAATTCTCAAATGGGAGAAGAGAGAAACCTAAGAGAGAAAGACTGGGTGGGATGGTGTAAA
100611757 TGAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAGGGACTAACTTGCAAATGGCCTAAAAAAT
66 TGAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAGGGACTAACTTGCAAATGGCCTAAAAAAT
100611822 TAGGGACCAAAATTACAATTATCCCATTCAACTTTAAACAACTTGCCTACCATTTTTTTCTTTCG
131 TAGGGACCAAAATTACAATTATCCCATTCAACTTTAAACAACTTGCCTACCATTTTTTTCTTTCG
100611887 GTGCCACTTGCACCTCCTATTTTTTGACTTTTCAACACCCCTTTTAATTTGTCTTTTCAACATTA
196 GTGCCACTTGCACCTCCTATTTTTTGACTTTTCAACACCCCTTTTAATTTGTCTTTTCAACATTA
100611952 ATTTCATGTACAATAATTACTGTTTTATTAAGTTACTATTAGATTAAATAATAATAATATCTTTT
261 ATTTCATGTACAATAATTACTGTTTTATTAAGTTACTATTAGATTAAATAATAATAATATCTTTT
100612017 GTTAATATTTTTTTATTCAAAACCATACTCAGTGGAGCAAAATGGAGACGAAAACTTGCTAAATT
326 GTTAATATTTTTTTATTCAAAACCATACTCAGTGGAGCAAAATGGAGACGAAAACTTGCTAAATT
100612082 GCATGCTAAATCAGTGAAATACTTGCTTGAATTCATCAAACTTTGCTCTTTTTCTTGTTGAACCG
391 GCATGCTAAATCAGTGAAATACTTGCTTGAATTCATCAAACTTTGCTCTTTTTCTTGTTGAACCG
100612147 ATTCGCTTTTGTTGGAGTTCTCAAGTCATCGTTGGATCAGTATTCAAATTTGCAGAGAATATAAT
456 ATTCGCTTTTGTTGGAGTTCTCAAGTCATCGTTGGATCAGTATTCAAATTTGCAGAGAATATAAT
100612212 AATAGTATTTGTTTACA
521 AATAGTATTTGTTTACA
100612229 TTAAGAATT
1 TTAAGAATT
100612238 TAACCTGGTT
Statistics
Matches: 545, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
537 545 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (537 bp):
TTAAGAATTCTCAAATGGGAGAAGAGAGAAACCTAAGAGAGAAAGACTGGGTGGGATGGTGTAAA
TGAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAGGGACTAACTTGCAAATGGCCTAAAAAAT
TAGGGACCAAAATTACAATTATCCCATTCAACTTTAAACAACTTGCCTACCATTTTTTTCTTTCG
GTGCCACTTGCACCTCCTATTTTTTGACTTTTCAACACCCCTTTTAATTTGTCTTTTCAACATTA
ATTTCATGTACAATAATTACTGTTTTATTAAGTTACTATTAGATTAAATAATAATAATATCTTTT
GTTAATATTTTTTTATTCAAAACCATACTCAGTGGAGCAAAATGGAGACGAAAACTTGCTAAATT
GCATGCTAAATCAGTGAAATACTTGCTTGAATTCATCAAACTTTGCTCTTTTTCTTGTTGAACCG
ATTCGCTTTTGTTGGAGTTCTCAAGTCATCGTTGGATCAGTATTCAAATTTGCAGAGAATATAAT
AATAGTATTTGTTTACA
Found at i:100617490 original size:12 final size:13
Alignment explanation
Indices: 100617473--100617509 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
100617463 GAACTGGACA
100617473 CGAACCGAA-CTC
1 CGAACCGAAGCTC
100617485 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
100617497 CGAACCGTAGCTC
1 CGAACCGAAGCTC
100617510 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:100620993 original size:28 final size:28
Alignment explanation
Indices: 100620959--100621014 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
100620949 CCTAGGGTGA
*
100620959 AGTTTTAATTTATTACTTTTCTTGAAAT
1 AGTTTTAATTTATTAATTTTCTTGAAAT
100620987 AGTTTTAATTTATTAATTTTCTTGAAAT
1 AGTTTTAATTTATTAATTTTCTTGAAAT
100621015 TTTAATCACG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (28 bp):
AGTTTTAATTTATTAATTTTCTTGAAAT
Found at i:100627815 original size:60 final size:60
Alignment explanation
Indices: 100627739--100627858 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
100627729 CATATACAGA
* *
100627739 AATGGGTATGGAGTTATGATCTTCCAAGGACCTGCTAAATACATGGAAATCTTGGAAAGT
1 AATGGGTATGGAGTTATGATCTTCCAAAGACCCGCTAAATACATGGAAATCTTGGAAAGT
*
100627799 AATGGGTATGGGGTTATGATCTTCCAAAGACCCGCTAAATACATGGAAATCTTGGAAAGT
1 AATGGGTATGGAGTTATGATCTTCCAAAGACCCGCTAAATACATGGAAATCTTGGAAAGT
100627859 GAACATACCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (60 bp):
AATGGGTATGGAGTTATGATCTTCCAAAGACCCGCTAAATACATGGAAATCTTGGAAAGT
Found at i:100630626 original size:19 final size:19
Alignment explanation
Indices: 100630562--100630638 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 19
100630552 TTTTTAATTA
* *
100630562 AAAATTATAAAATGTATTA-
1 AAAAGTATAAAAT-TAATAT
* *
100630581 AAAATTATAAAAAT-AT-T
1 AAAAGTATAAAATTAATAT
*
100630598 AAATGT-TAAAATTAATAT
1 AAAAGTATAAAATTAATAT
*
100630616 AAAAGTATAAAATTATTAT
1 AAAAGTATAAAATTAATAT
100630635 AAAA
1 AAAA
100630639 AACCATAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
16 6 0.13
17 7 0.15
18 7 0.15
19 27 0.57
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AAAAGTATAAAATTAATAT
Done.