Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 307 of 344
Found at i:101393220 original size:17 final size:17
Alignment explanation
Indices: 101393187--101393220 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
101393177 ATTACAAAAT
* *
101393187 CAAATCTTATCATATTA
1 CAAATCTTATAAGATTA
101393204 CAAATCTTATAAGATTA
1 CAAATCTTATAAGATTA
101393221 ATTTTCATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (17 bp):
CAAATCTTATAAGATTA
Found at i:101393516 original size:64 final size:66
Alignment explanation
Indices: 101393437--101393563 Score: 186
Period size: 64 Copynumber: 2.0 Consensus size: 66
101393427 TTTTTAAAAA
* *
101393437 ATATATAATTTATTAAGAAACTAAAAATTA-AATTAAATATACAAGT-AAAAAAATATTTAAATG
1 ATATATAATTGATTAAGAAACTAAAAATTAGAATTAAATATACAAGTGAAAAAAAAATTTAAATG
101393500 T
66 T
* * * *
101393501 ATATATAATTGATTAATAAACTAAAAATTAGACTTAAATATATATGTGAAAAAAAAATTTAAA
1 ATATATAATTGATTAAGAAACTAAAAATTAGAATTAAATATACAAGTGAAAAAAAAATTTAAA
101393564 AATATTGATA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 28 0.51
65 13 0.24
66 14 0.25
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (66 bp):
ATATATAATTGATTAAGAAACTAAAAATTAGAATTAAATATACAAGTGAAAAAAAAATTTAAATG
T
Found at i:101393818 original size:27 final size:26
Alignment explanation
Indices: 101393787--101393840 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
101393777 ACTAATTAAA
101393787 TAGACTAATTTATATTAGTAATTT-TTT
1 TAGACTAATTTA-ATT-GTAATTTATTT
**
101393814 TAGACTTTTTTAATTGTAATTTATTT
1 TAGACTAATTTAATTGTAATTTATTT
101393840 T
1 T
101393841 TGGGCTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 7 0.29
26 7 0.29
27 10 0.42
ACGTcount: A:0.30, C:0.04, G:0.07, T:0.59
Consensus pattern (26 bp):
TAGACTAATTTAATTGTAATTTATTT
Found at i:101396300 original size:22 final size:22
Alignment explanation
Indices: 101396275--101396316 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
101396265 TATTATTTTT
*
101396275 ATTTTTATATTTAATATTTTAG
1 ATTTTTATATTAAATATTTTAG
* *
101396297 ATTTTTTTATTAAATTTTTT
1 ATTTTTATATTAAATATTTT
101396317 TGAACAATCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (22 bp):
ATTTTTATATTAAATATTTTAG
Found at i:101397050 original size:17 final size:19
Alignment explanation
Indices: 101397022--101397068 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
101397012 TTAAAATCTA
101397022 ATTAATTATATT-TATATTT
1 ATTAA-TATATTGTATATTT
*
101397041 -TTAATATATTGTATCTTT
1 ATTAATATATTGTATATTT
101397059 ATTAATATAT
1 ATTAATATAT
101397069 AAATATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 6 0.24
18 10 0.40
19 9 0.36
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTAATATATTGTATATTT
Found at i:101398660 original size:118 final size:120
Alignment explanation
Indices: 101398469--101398706 Score: 363
Period size: 118 Copynumber: 2.0 Consensus size: 120
101398459 CTAGTGTTGG
*
101398469 CATTGTGAATGCCGACATCTACTAAAATATTTTTTACTTTTTTATTTAAAATCCTAAAATACTAG
1 CATTGTGAATGCCGACACCTACTAAAATA---TTTACTTTTTTATTTAAAATCCTAAAATACTAG
*
101398534 TATTTTTAAAGTGTATTTG-AAAAAAATACATATTAGTGCTGACAAACACAGTGTCGA
63 TATTTTTAAAGTGTATTTGAAAAAAAATACATATTAGTGCCGACAAACACAGTGTCGA
* * *
101398591 CATTGTGAATGTCGACACCTATTAAAATA-TTATTTTTTTATTTAAAATCCTAAAATACTAGTAT
1 CATTGTGAATGCCGACACCTACTAAAATATTTACTTTTTTATTTAAAATCCTAAAATACTAGTAT
* *
101398655 TTTTAAAGTGTATTTGAAAAAAAAATACATATTGGTGCCGACGAACACAGTG
66 TTTTAAAGTGTATTTG-AAAAAAAATACATATTAGTGCCGACAAACACAGTG
101398707 CCTACACAAA
Statistics
Matches: 107, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
118 50 0.47
120 31 0.29
122 26 0.24
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (120 bp):
CATTGTGAATGCCGACACCTACTAAAATATTTACTTTTTTATTTAAAATCCTAAAATACTAGTAT
TTTTAAAGTGTATTTGAAAAAAAATACATATTAGTGCCGACAAACACAGTGTCGA
Found at i:101402969 original size:26 final size:26
Alignment explanation
Indices: 101402940--101403021 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
101402930 TGATACAAAT
101402940 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
101402966 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
101402992 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
101403018 TGAT
1 TGAT
101403022 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:101407642 original size:10 final size:12
Alignment explanation
Indices: 101407616--101407645 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
101407606 TATTCATATG
101407616 TATATTTAGGCA
1 TATATTTAGGCA
*
101407628 TATATTTAGGAA
1 TATATTTAGGCA
101407640 TATATT
1 TATATT
101407646 AATATCTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (12 bp):
TATATTTAGGCA
Found at i:101408690 original size:7 final size:7
Alignment explanation
Indices: 101408682--101408732 Score: 77
Period size: 7 Copynumber: 7.4 Consensus size: 7
101408672 AACCCCAAAC
*
101408682 CCTTGAC
1 CCTTGAA
101408689 CCTTGAA
1 CCTTGAA
*
101408696 -CATGAA
1 CCTTGAA
101408702 CCTTGAA
1 CCTTGAA
101408709 CCTTGAA
1 CCTTGAA
101408716 CCTTGAA
1 CCTTGAA
101408723 CCTTGAA
1 CCTTGAA
101408730 CCT
1 CCT
101408733 CAAATCCATA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
6 5 0.12
7 35 0.88
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (7 bp):
CCTTGAA
Found at i:101410722 original size:26 final size:26
Alignment explanation
Indices: 101410693--101410746 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
101410683 CTGTCAATAT
101410693 TACATCATCATATTTTAATCACATTA
1 TACATCATCATATTTTAATCACATTA
101410719 TACATCATCATATTTTAATCACATTA
1 TACATCATCATATTTTAATCACATTA
101410745 TA
1 TA
101410747 AAATAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.43
Consensus pattern (26 bp):
TACATCATCATATTTTAATCACATTA
Found at i:101412600 original size:20 final size:19
Alignment explanation
Indices: 101412555--101412604 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
101412545 GATGAACATC
*
101412555 ATAAAAAGAATTTTAATATGA
1 ATAAAAA-AA-TTTAATATCA
101412576 A-AAAAAAATTTAATATACA
1 ATAAAAAAATTTAATAT-CA
101412595 ATAAAAAAAT
1 ATAAAAAAAT
101412605 AATTTTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 8 0.31
19 4 0.15
20 13 0.50
21 1 0.04
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (19 bp):
ATAAAAAAATTTAATATCA
Found at i:101415285 original size:3 final size:3
Alignment explanation
Indices: 101415279--101415331 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
101415269 TAAATGATGA
101415279 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
101415327 ATT AT
1 ATT AT
101415332 GGTTTAGGTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:101417913 original size:15 final size:14
Alignment explanation
Indices: 101417893--101417934 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
101417883 TTTATTACAT
101417893 TATTATTATTTCTTC
1 TATTATTATTT-TTC
*
101417908 TATTATTATTTTTT
1 TATTATTATTTTTC
*
101417922 TACTATTATTTTT
1 TATTATTATTTTT
101417935 TAGACATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (14 bp):
TATTATTATTTTTC
Found at i:101417976 original size:3 final size:3
Alignment explanation
Indices: 101417968--101418219 Score: 113
Period size: 3 Copynumber: 83.7 Consensus size: 3
101417958 ACTAATGTCC
* * * * * * *
101417968 TTA TTA TTA CTA TTA TTT TTA TTC TTT TTA TTA TTTA TCA TCA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * * * * *
101418014 -TA TTA TTA TTA TTA TTA TTG TTA CTA CTA GTA TTA TTA TAA CTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * **
101418061 TT- TTA TTA CTA TTA CTA CTA CTA TTA TT- TT- TTA CCA TTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
* * * *
101418107 CCTA TTA TTA TTC TTA TTA GTA -TA TTA TTA TTTC TTA TT- TT- TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
* ** * *
101418151 TTA TCA TTA TTA TTA ACA TTTA TTA TTA TTA TTA TTAA TGTA CTG TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT-A T-TA TTA TTA
*
101418199 TTC TCTA TTA TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TT
101418220 GTTGTTGTTG
Statistics
Matches: 189, Mismatches: 47, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
2 14 0.07
3 160 0.85
4 13 0.07
5 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:101418115 original size:14 final size:14
Alignment explanation
Indices: 101418081--101418118 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
101418071 ATTACTACTA
* *
101418081 CTATTATTTTTTAC
1 CTATTATTATTAAC
101418095 C-ATTATTATTAAC
1 CTATTATTATTAAC
101418108 CTATTATTATT
1 CTATTATTATT
101418119 CTTATTAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (14 bp):
CTATTATTATTAAC
Found at i:101418175 original size:22 final size:22
Alignment explanation
Indices: 101418147--101418188 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
101418137 TTTCTTATTT
101418147 TTTATTATCATTATTATTAACA
1 TTTATTATCATTATTATTAACA
*
101418169 TTTATTATTATTATTATTAA
1 TTTATTATCATTATTATTAA
101418189 TGTACTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTATTATCATTATTATTAACA
Found at i:101418224 original size:3 final size:3
Alignment explanation
Indices: 101418218--101418257 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
101418208 ATTATTATTA
101418218 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTCG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT-G TTG
101418258 ATAATTATCG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.00, C:0.03, G:0.33, T:0.65
Consensus pattern (3 bp):
TTG
Found at i:101423057 original size:14 final size:14
Alignment explanation
Indices: 101423038--101423089 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
101423028 CCAGAAGCAA
101423038 AAAAATAAAAATAT
1 AAAAATAAAAATAT
*
101423052 AAAAAT-TAAATA-
1 AAAAATAAAAATAT
*
101423064 AAAAATATTAAA-AT
1 AAAAATA-AAAATAT
101423078 AAAAATAAAAAT
1 AAAAATAAAAAT
101423090 GGCTAAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 6 0.19
13 9 0.28
14 17 0.53
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAATAAAAATAT
Found at i:101423069 original size:12 final size:13
Alignment explanation
Indices: 101423046--101423083 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
101423036 AAAAAAATAA
101423046 AAATATAAAAATT
1 AAATATAAAAATT
*
101423059 AAATAAAAAATATT
1 AAATATAAAA-ATT
101423073 AAA-ATAAAAAT
1 AAATATAAAAAT
101423084 AAAAATGGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 2 0.09
13 14 0.64
14 6 0.27
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAATATAAAAATT
Found at i:101423089 original size:20 final size:20
Alignment explanation
Indices: 101423038--101423089 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
101423028 CCAGAAGCAA
101423038 AAAAATAAAAATATAAAAAT
1 AAAAATAAAAATATAAAAAT
* *
101423058 -TAAATAAAAAATATTAAAAT
1 AAAAAT-AAAAATATAAAAAT
101423078 AAAAATAAAAAT
1 AAAAATAAAAAT
101423090 GGCTAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 4 0.15
20 19 0.70
21 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAAATAAAAATATAAAAAT
Found at i:101431303 original size:30 final size:30
Alignment explanation
Indices: 101431269--101431329 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
101431259 TCCTTAACTC
101431269 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
101431299 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
101431329 A
1 A
101431330 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:101436144 original size:32 final size:32
Alignment explanation
Indices: 101436101--101436177 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
101436091 CAAAATAAAT
** *
101436101 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
101436133 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
101436165 GATGAAAAGTTAC
1 TATGAAAAGTTAC
101436178 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:101440271 original size:28 final size:28
Alignment explanation
Indices: 101440208--101440305 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
101440198 ATATTAAGTC
*
101440208 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
101440235 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
101440263 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
101440292 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101440306 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:101449743 original size:32 final size:32
Alignment explanation
Indices: 101449700--101449776 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
101449690 CAAAATAAAT
** *
101449700 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
101449732 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
101449764 GATGAAAAGTTAC
1 TATGAAAAGTTAC
101449777 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:101453651 original size:15 final size:14
Alignment explanation
Indices: 101453631--101453672 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
101453621 CGATGAATTT
101453631 ATTGAATTTATATTG
1 ATTGAA-TTATATTG
*
101453646 ATTGAAATTATTTTG
1 ATTG-AATTATATTG
101453661 ATTGAATTATAT
1 ATTGAATTATAT
101453673 AATATATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.29
15 15 0.62
16 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (14 bp):
ATTGAATTATATTG
Found at i:101454087 original size:23 final size:23
Alignment explanation
Indices: 101454056--101454129 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 23
101454046 ATCACTTTAC
101454056 GTGTCGTATTTTAGGCACCTCAT
1 GTGTCGTATTTTAGGCACCTCAT
* *
101454079 GTGTTGTA--TTAGGCACCTCGT
1 GTGTCGTATTTTAGGCACCTCAT
* *
101454100 GTGTCG--TTTTAGGCACTTTAT
1 GTGTCGTATTTTAGGCACCTCAT
*
101454121 GTGTTGTAT
1 GTGTCGTAT
101454130 ACTGATTAGG
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
21 32 0.80
23 8 0.20
ACGTcount: A:0.15, C:0.16, G:0.26, T:0.43
Consensus pattern (23 bp):
GTGTCGTATTTTAGGCACCTCAT
Found at i:101454092 original size:21 final size:21
Alignment explanation
Indices: 101454066--101454129 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
101454056 GTGTCGTATT
101454066 TTAGGCACCTCATGTGTTGTA
1 TTAGGCACCTCATGTGTTGTA
* * *
101454087 TTAGGCACCTCGTGTGTCGTT
1 TTAGGCACCTCATGTGTTGTA
* *
101454108 TTAGGCACTTTATGTGTTGTA
1 TTAGGCACCTCATGTGTTGTA
101454129 T
1 T
101454130 ACTGATTAGG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.16, C:0.17, G:0.25, T:0.42
Consensus pattern (21 bp):
TTAGGCACCTCATGTGTTGTA
Found at i:101462651 original size:28 final size:29
Alignment explanation
Indices: 101462585--101462653 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 29
101462575 ATTGGGGTCG
* * *
101462585 ATGGGTCATATGTATGTGATTTGGGCCTA
1 ATGGGTCATATGAATGAGATTTAGGCCTA
**
101462614 ATGGCCCATATGAATGAGA-TTAGGCCTA
1 ATGGGTCATATGAATGAGATTTAGGCCTA
*
101462642 GTGGGTCATATG
1 ATGGGTCATATG
101462654 CATGTATGTG
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
28 17 0.53
29 15 0.47
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (29 bp):
ATGGGTCATATGAATGAGATTTAGGCCTA
Found at i:101478865 original size:18 final size:18
Alignment explanation
Indices: 101478842--101478880 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
101478832 TTTCGAAAAG
101478842 ACTTAATTTGGTTTCCAA
1 ACTTAATTTGGTTTCCAA
101478860 ACTTAATTTGGTTTCCAA
1 ACTTAATTTGGTTTCCAA
101478878 ACT
1 ACT
101478881 CATGAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (18 bp):
ACTTAATTTGGTTTCCAA
Found at i:101482938 original size:24 final size:24
Alignment explanation
Indices: 101482911--101482958 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
101482901 CATATCATAA
101482911 TCCATTCATTCACATGCACTTTGT
1 TCCATTCATTCACATGCACTTTGT
101482935 TCCATTCATTCACATGCACTTTGT
1 TCCATTCATTCACATGCACTTTGT
101482959 CCCTAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.29, G:0.08, T:0.42
Consensus pattern (24 bp):
TCCATTCATTCACATGCACTTTGT
Found at i:101492734 original size:26 final size:26
Alignment explanation
Indices: 101492698--101492829 Score: 85
Period size: 26 Copynumber: 5.0 Consensus size: 26
101492688 TACTTTTAAA
101492698 TAAAT-AGTTAATAGAATCAATTGGT
1 TAAATCAGTTAATAGAATCAATTGGT
* *
101492723 TAAATCAGTTAATAGAATCAGTT-GC
1 TAAATCAGTTAATAGAATCAATTGGT
*** *
101492748 T--ATCAGTTAAGTTTTATCAAATACT-TT
1 TAAATCAGTTAA-TAGAATC-AAT--TGGT
*
101492775 TAAATAAATAGTTAATAGAATCAATTGGT
1 TAAAT---CAGTTAATAGAATCAATTGGT
* *
101492804 TAAATTAGTTAATAGAATCAGTTGGT
1 TAAATCAGTTAATAGAATCAATTGGT
101492830 CAAACTAGCC
Statistics
Matches: 82, Mismatches: 14, Indels: 21
0.70 0.12 0.18
Matches are distributed among these distances:
23 9 0.11
24 4 0.05
25 9 0.11
26 36 0.44
27 2 0.02
28 1 0.01
29 8 0.10
30 3 0.04
31 4 0.05
32 6 0.07
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (26 bp):
TAAATCAGTTAATAGAATCAATTGGT
Found at i:101492750 original size:81 final size:81
Alignment explanation
Indices: 101492665--101492827 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
101492655 TCAGCTTTCA
101492665 GCTATCAGTTAAGTTTTATCAAATACTTTTAAATAAATAGTTAATAGAATCAATTGGTTAAATCA
1 GCTATCAGTTAAGTTTTATCAAATACTTTTAAATAAATAGTTAATAGAATCAATTGGTTAAATCA
101492730 GTTAATAGAATCAGTT
66 GTTAATAGAATCAGTT
*
101492746 GCTATCAGTTAAGTTTTATCAAATACTTTTAAATAAATAGTTAATAGAATCAATTGGTTAAATTA
1 GCTATCAGTTAAGTTTTATCAAATACTTTTAAATAAATAGTTAATAGAATCAATTGGTTAAATCA
101492811 GTTAATAGAATCAGTT
66 GTTAATAGAATCAGTT
101492827 G
1 G
101492828 GTCAAACTAG
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (81 bp):
GCTATCAGTTAAGTTTTATCAAATACTTTTAAATAAATAGTTAATAGAATCAATTGGTTAAATCA
GTTAATAGAATCAGTT
Found at i:101493566 original size:20 final size:18
Alignment explanation
Indices: 101493541--101493585 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
101493531 AGAATTTAAA
*
101493541 AAAAATCAAAATAACTTTTT
1 AAAAATCAAAA-AA-TTTAT
101493561 AAAAATTCAAAAAATTTAT
1 AAAAA-TCAAAAAATTTAT
101493580 AAAAAT
1 AAAAAT
101493586 ATTTAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 1 0.04
19 9 0.39
20 7 0.30
21 6 0.26
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAAATCAAAAAATTTAT
Found at i:101494460 original size:15 final size:15
Alignment explanation
Indices: 101494440--101494470 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
101494430 TATACTTATT
101494440 TTTTTAAATATTTTA
1 TTTTTAAATATTTTA
101494455 TTTTTAAATATTTTA
1 TTTTTAAATATTTTA
101494470 T
1 T
101494471 AAATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTAAATATTTTA
Found at i:101497359 original size:24 final size:25
Alignment explanation
Indices: 101497323--101497373 Score: 95
Period size: 24 Copynumber: 2.1 Consensus size: 25
101497313 ATTATAAAAA
101497323 AAACACTTAGAGTTATTGAGATGCT
1 AAACACTTAGAGTTATTGAGATGCT
101497348 AAACACTT-GAGTTATTGAGATGCT
1 AAACACTTAGAGTTATTGAGATGCT
101497372 AA
1 AA
101497374 GGCATCTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (25 bp):
AAACACTTAGAGTTATTGAGATGCT
Found at i:101498367 original size:15 final size:15
Alignment explanation
Indices: 101498347--101498396 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
101498337 TGTAGTTGAA
101498347 GATGACGACGACAAC
1 GATGACGACGACAAC
* *
101498362 GATGACGACGACGAT
1 GATGACGACGACAAC
* *
101498377 GATGACGATGACAAG
1 GATGACGACGACAAC
101498392 GATGA
1 GATGA
101498397 AGATGATGCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.38, C:0.18, G:0.32, T:0.12
Consensus pattern (15 bp):
GATGACGACGACAAC
Found at i:101500738 original size:13 final size:13
Alignment explanation
Indices: 101500717--101500749 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
101500707 AAATGAACTT
*
101500717 AAAATTCTTTAAA
1 AAAAATCTTTAAA
101500730 AAAAATC-TTAAA
1 AAAAATCTTTAAA
101500742 AAAAATCT
1 AAAAATCT
101500750 CAATATCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAAATCTTTAAA
Found at i:101501007 original size:20 final size:21
Alignment explanation
Indices: 101500965--101501014 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
101500955 TAGTTATATA
* *
101500965 ATGTAATATAATATTATAGTAT
1 ATGT-ATATAATATAATACTAT
*
101500987 A-GTATATAATGTAATACTAT
1 ATGTATATAATATAATACTAT
101501007 ATGTATAT
1 ATGTATAT
101501015 GTATTAATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 15 0.62
21 8 0.33
22 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (21 bp):
ATGTATATAATATAATACTAT
Found at i:101502396 original size:20 final size:21
Alignment explanation
Indices: 101502358--101502398 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
101502348 AAATTAATAC
101502358 TAAATTTTAAAATATATTAAT
1 TAAATTTTAAAATATATTAAT
*
101502379 TAAATTTTCAAA-ATATTAAT
1 TAAATTTTAAAATATATTAAT
101502399 ATTATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAATTTTAAAATATATTAAT
Found at i:101502402 original size:22 final size:21
Alignment explanation
Indices: 101502350--101502407 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
101502340 TTAATTTAAA
*
101502350 ATTAATACTAAATTTTAAAAT
1 ATTAATATTAAATTTTAAAAT
*
101502371 A-TATTAATTAAATTTTCAAAAT
1 ATTAAT-ATTAAATTTT-AAAAT
*
101502393 ATTAATATTATATTT
1 ATTAATATTAAATTT
101502408 ATTTAACTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 3 0.10
21 10 0.33
22 14 0.47
23 3 0.10
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTAATATTAAATTTTAAAAT
Found at i:101503424 original size:20 final size:19
Alignment explanation
Indices: 101503380--101503429 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
101503370 AAATGGTAAT
*
101503380 TAAATCAATTTGATTAAAA
1 TAAATCAAATTGATTAAAA
*
101503399 TCAAATCAAATTGATTAGCAA
1 T-AAATCAAATTGATTA-AAA
*
101503420 TAAATAAAAT
1 TAAATCAAAT
101503430 AATGGTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 22 0.85
21 3 0.12
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.32
Consensus pattern (19 bp):
TAAATCAAATTGATTAAAA
Found at i:101505257 original size:24 final size:24
Alignment explanation
Indices: 101505230--101505281 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
101505220 TTAGTAAGTC
*
101505230 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
101505254 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
101505278 AAAT
1 AAAT
101505282 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:101507226 original size:24 final size:24
Alignment explanation
Indices: 101507199--101507250 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
101507189 TTAGTAAGTC
*
101507199 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
101507223 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
101507247 AAAT
1 AAAT
101507251 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:101512553 original size:25 final size:24
Alignment explanation
Indices: 101512479--101512677 Score: 221
Period size: 25 Copynumber: 8.3 Consensus size: 24
101512469 ACTAATGAAT
*
101512479 AGAGAGCACTGAAGTGCT-ATA-C
1 AGAGAGCACTGACGTGCTAATATC
** *
101512501 AGAGAGCACAAATGTGCT-A-ATC
1 AGAGAGCACTGACGTGCTAATATC
101512523 AGAGAGCACTGACGTGCTAAATATC
1 AGAGAGCACTGACGTGCT-AATATC
** *
101512548 AGAGAGCACAAATGTGCT-A-ATC
1 AGAGAGCACTGACGTGCTAATATC
101512570 AGAGAGCACTGACGTGCTAAATATC
1 AGAGAGCACTGACGTGCT-AATATC
*
101512595 AGAGAGCACTGACGTACTAAATATC
1 AGAGAGCACTGACGTGCT-AATATC
*
101512620 AGAGAGCACTGGCGTGCTAATAATC
1 AGAGAGCACTGACGTGCTAAT-ATC
*
101512645 AGAGAGCACTGGCGTGCTAATATTC
1 AGAGAGCACTGACGTGCTAATA-TC
101512670 AGAGAGCA
1 AGAGAGCA
101512678 TGCTGAGGTC
Statistics
Matches: 153, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.01
22 50 0.33
23 1 0.01
24 6 0.04
25 95 0.62
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (24 bp):
AGAGAGCACTGACGTGCTAATATC
Found at i:101512554 original size:47 final size:46
Alignment explanation
Indices: 101512479--101512653 Score: 228
Period size: 47 Copynumber: 3.7 Consensus size: 46
101512469 ACTAATGAAT
*
101512479 AGAGAGCACTGAAGTGCT-ATA-CAGAGAGCACAAATGTGCTAATC
1 AGAGAGCACTGACGTGCTAATATCAGAGAGCACAAATGTGCTAATC
101512523 AGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAATC
1 AGAGAGCACTGACGTGCT-AATATCAGAGAGCACAAATGTGCTAATC
** * *
101512570 AGAGAGCACTGACGTGCTAAATATCAGAGAGCACTGACGTACTAAATATC
1 AGAGAGCACTGACGTGCT-AATATCAGAGAGCACAAATGTGCT--A-ATC
*
101512620 AGAGAGCACTGGCGTGCTAATAATCAGAGAGCAC
1 AGAGAGCACTGACGTGCTAAT-ATCAGAGAGCAC
101512654 TGGCGTGCTA
Statistics
Matches: 118, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
44 17 0.14
46 3 0.03
47 62 0.53
49 4 0.03
50 32 0.27
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.18
Consensus pattern (46 bp):
AGAGAGCACTGACGTGCTAATATCAGAGAGCACAAATGTGCTAATC
Found at i:101512624 original size:72 final size:72
Alignment explanation
Indices: 101512520--101512677 Score: 219
Period size: 72 Copynumber: 2.2 Consensus size: 72
101512510 AAATGTGCTA
* *
101512520 ATCAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGC-TAATCAGAGAGCACTGACG
1 ATCAGAGAGCACTGACGTACTAAATATCAGAGAGCACAAACGTGCATAATCAGAGAGCACTGACG
101512584 TGCTAAAT
66 TGCT-AAT
*** *
101512592 ATCAGAGAGCACTGACGTACTAAATATCAGAGAGCACTGGCGTGCTAATAATCAGAGAGCACTGG
1 ATCAGAGAGCACTGACGTACTAAATATCAGAGAGCACAAACGTGC--ATAATCAGAGAGCACTGA
101512657 CGTGCTAAT
64 CGTGCTAAT
101512666 ATTCAGAGAGCA
1 A-TCAGAGAGCA
101512678 TGCTGAGGTC
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
72 40 0.53
74 4 0.05
75 32 0.42
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (72 bp):
ATCAGAGAGCACTGACGTACTAAATATCAGAGAGCACAAACGTGCATAATCAGAGAGCACTGACG
TGCTAAT
Found at i:101512646 original size:50 final size:49
Alignment explanation
Indices: 101512479--101512677 Score: 225
Period size: 47 Copynumber: 4.2 Consensus size: 49
101512469 ACTAATGAAT
* ** *
101512479 AGAGAGCACTGAAGTGCT--ATA-CAGAGAGCACAAATGTGCT-A-ATC
1 AGAGAGCACTGACGTGCTAAATATCAGAGAGCACTGACGTGCTAATATC
** *
101512523 AGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCT-A-ATC
1 AGAGAGCACTGACGTGCTAAATATCAGAGAGCACTGACGTGCTAATATC
*
101512570 AGAGAGCACTGACGTGCTAAATATCAGAGAGCACTGACGTACTAAATATC
1 AGAGAGCACTGACGTGCTAAATATCAGAGAGCACTGACGTGCT-AATATC
* *
101512620 AGAGAGCACTGGCGTGCT-AATAATCAGAGAGCACTGGCGTGCTAATATTC
1 AGAGAGCACTGACGTGCTAAAT-ATCAGAGAGCACTGACGTGCTAATA-TC
101512670 AGAGAGCA
1 AGAGAGCA
101512678 TGCTGAGGTC
Statistics
Matches: 139, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
44 17 0.12
46 3 0.02
47 62 0.45
49 8 0.06
50 49 0.35
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (49 bp):
AGAGAGCACTGACGTGCTAAATATCAGAGAGCACTGACGTGCTAATATC
Found at i:101521462 original size:227 final size:227
Alignment explanation
Indices: 101521067--101521525 Score: 909
Period size: 227 Copynumber: 2.0 Consensus size: 227
101521057 GAACAAGCTA
101521067 AACAAAGAGGGTATTTCCTTAAAGTAATAAAAATTTCCTCTTTACTCCATCCTAGGCTCATAAAT
1 AACAAAGAGGGTATTTCCTTAAAGTAATAAAAATTTCCTCTTTACTCCATCCTAGGCTCATAAAT
101521132 GCTTCAACTTTTTTCTTCCAATTAGCGTTGCTAACTGAACAAATAACCCTAAGAGCATGTATAAA
66 GCTTCAACTTTTTTCTTCCAATTAGCGTTGCTAACTGAACAAATAACCCTAAGAGCATGTATAAA
*
101521197 CCTAGATTCTGCCGGCTCTAGACCGATTTCTTTAATGGTTTTAATGGCGTAAACCATTCGAGCAT
131 CCTAGACTCTGCCGGCTCTAGACCGATTTCTTTAATGGTTTTAATGGCGTAAACCATTCGAGCAT
101521262 GGCTTTGCAAAATGACCCTAGGTTGTAATACT
196 GGCTTTGCAAAATGACCCTAGGTTGTAATACT
101521294 AACAAAGAGGGTATTTCCTTAAAGTAATAAAAATTTCCTCTTTACTCCATCCTAGGCTCATAAAT
1 AACAAAGAGGGTATTTCCTTAAAGTAATAAAAATTTCCTCTTTACTCCATCCTAGGCTCATAAAT
101521359 GCTTCAACTTTTTTCTTCCAATTAGCGTTGCTAACTGAACAAATAACCCTAAGAGCATGTATAAA
66 GCTTCAACTTTTTTCTTCCAATTAGCGTTGCTAACTGAACAAATAACCCTAAGAGCATGTATAAA
101521424 CCTAGACTCTGCCGGCTCTAGACCGATTTCTTTAATGGTTTTAATGGCGTAAACCATTCGAGCAT
131 CCTAGACTCTGCCGGCTCTAGACCGATTTCTTTAATGGTTTTAATGGCGTAAACCATTCGAGCAT
101521489 GGCTTTGCAAAATGACCCTAGGTTGTAATACT
196 GGCTTTGCAAAATGACCCTAGGTTGTAATACT
101521521 AACAA
1 AACAA
101521526 TTTCCATATC
Statistics
Matches: 231, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
227 231 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.32
Consensus pattern (227 bp):
AACAAAGAGGGTATTTCCTTAAAGTAATAAAAATTTCCTCTTTACTCCATCCTAGGCTCATAAAT
GCTTCAACTTTTTTCTTCCAATTAGCGTTGCTAACTGAACAAATAACCCTAAGAGCATGTATAAA
CCTAGACTCTGCCGGCTCTAGACCGATTTCTTTAATGGTTTTAATGGCGTAAACCATTCGAGCAT
GGCTTTGCAAAATGACCCTAGGTTGTAATACT
Found at i:101522406 original size:8 final size:8
Alignment explanation
Indices: 101522395--101522424 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
101522385 CATTTTTAGT
*
101522395 TTTTATAA
1 TTTTAAAA
101522403 TTTTAAAA
1 TTTTAAAA
101522411 TTTTAAAA
1 TTTTAAAA
101522419 TTTTAA
1 TTTTAA
101522425 TCTTGATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTTAAAA
Found at i:101525468 original size:12 final size:12
Alignment explanation
Indices: 101525451--101525476 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
101525441 AACCATGCTA
101525451 CATGGTTATTTC
1 CATGGTTATTTC
101525463 CATGGTTATTTC
1 CATGGTTATTTC
101525475 CA
1 CA
101525477 CTCAATTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (12 bp):
CATGGTTATTTC
Found at i:101532596 original size:15 final size:15
Alignment explanation
Indices: 101532576--101532604 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
101532566 TATAAGATAA
101532576 TTTTCAATATTATTT
1 TTTTCAATATTATTT
101532591 TTTTCAATATTATT
1 TTTTCAATATTATT
101532605 AATTAACACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTCAATATTATTT
Found at i:101534017 original size:16 final size:16
Alignment explanation
Indices: 101533984--101534017 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
101533974 CCCATTTGTT
* *
101533984 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
101534000 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
101534016 AA
1 AA
101534018 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:101536967 original size:38 final size:38
Alignment explanation
Indices: 101536914--101536991 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
101536904 TGCCAGTGTA
101536914 AGACCATATTAGGAACATGACATCGAAAATGTTATGAG
1 AGACCATATTAGGAACATGACATCGAAAATGTTATGAG
* *
101536952 AGACCATGTTTGGAACATGACATCGAAAATGTTATGAG
1 AGACCATATTAGGAACATGACATCGAAAATGTTATGAG
101536990 AG
1 AG
101536992 CCAGTATAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (38 bp):
AGACCATATTAGGAACATGACATCGAAAATGTTATGAG
Found at i:101537261 original size:48 final size:48
Alignment explanation
Indices: 101537040--101537264 Score: 204
Period size: 48 Copynumber: 4.7 Consensus size: 48
101537030 ATTGTGTGCT
* * * * * * * *
101537040 AGTGTAAGACCATGCCTGGGACAT-GACGTAGGCCACAATATGAGAGCA
1 AGTGTAAGACCATGTCTGGGACATAG-CATCGGCCTCGACATGTGAGCC
* * * *
101537088 AGTGTAAAAACATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGACATGTGAGCC
* * * *** * *
101537136 AATGTAATACCATGTCTGGGACATAGCATCGGCAAT-GAGGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGC-CTCGACATGTGAGCC
*
101537184 AGTGTAAGACTC-TGTCTGGGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGAC-CATGTCTGGGACATAGCATCGGCCTCGACATGTGAGCC
*
101537232 AGTGTAAGACCATGTCTAGGACATAGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGC
101537265 AATTTACCCT
Statistics
Matches: 141, Mismatches: 31, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
47 2 0.01
48 136 0.96
49 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGACATGTGAGCC
Found at i:101546056 original size:28 final size:28
Alignment explanation
Indices: 101546016--101546074 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
101546006 ATACTAATTA
101546016 TTTTACATTATTAATCCATTGATGGTAG
1 TTTTACATTATTAATCCATTGATGGTAG
*
101546044 TTTTACATTATTAATCTATTGATGGTAG
1 TTTTACATTATTAATCCATTGATGGTAG
101546072 TTT
1 TTT
101546075 ATCTGGTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (28 bp):
TTTTACATTATTAATCCATTGATGGTAG
Found at i:101552179 original size:14 final size:15
Alignment explanation
Indices: 101552160--101552188 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
101552150 TTGTGTGTTC
101552160 TTTA-TTTTTATTTT
1 TTTATTTTTTATTTT
101552174 TTTATTTTTTATTTT
1 TTTATTTTTTATTTT
101552189 ATTTTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTATTTTTTATTTT
Found at i:101557905 original size:12 final size:12
Alignment explanation
Indices: 101557883--101557912 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
101557873 AAGGTGACTC
101557883 TTTTA-TTTTTA
1 TTTTATTTTTTA
101557894 TTTTATTTTTTA
1 TTTTATTTTTTA
101557906 TTTTATT
1 TTTTATT
101557913 ATTCTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:101559091 original size:12 final size:14
Alignment explanation
Indices: 101559044--101559085 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
101559034 TTTCATTCAA
101559044 ATTATTTAC-TTTAT
1 ATTATTT-CTTTTAT
* *
101559058 AATATTTATTTTAT
1 ATTATTTCTTTTAT
101559072 ATTATTTCTTTTAT
1 ATTATTTCTTTTAT
101559086 TTTTTCCCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTATTTCTTTTAT
Found at i:101561709 original size:17 final size:16
Alignment explanation
Indices: 101561677--101561710 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
101561667 TTTTTTTAAA
101561677 ATGTTATAATAAGATG
1 ATGTTATAATAAGATG
*
101561693 ATGTTATTAATATGATG
1 ATGTTA-TAATAAGATG
101561710 A
1 A
101561711 ATATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (16 bp):
ATGTTATAATAAGATG
Found at i:101563495 original size:3 final size:3
Alignment explanation
Indices: 101563484--101563522 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
101563474 TTTTTTCTAA
* *
101563484 TAT TGT TAT TAT TAT TAC TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
101563523 GAGTATACTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:101563845 original size:20 final size:20
Alignment explanation
Indices: 101563790--101563866 Score: 68
Period size: 20 Copynumber: 3.8 Consensus size: 20
101563780 ATTTTCTTAT
101563790 TATATTATTATGTATATTATTC
1 TATA-TATTATGTATATT-TTC
* *
101563812 T-TTTAAATAT-TATATTTTC
1 TATAT-ATTATGTATATTTTC
* *
101563831 TATATATTATGTATATATTA
1 TATATATTATGTATATTTTC
*
101563851 TATATATTACGTATAT
1 TATATATTATGTATAT
101563867 ATCTAGTAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
19 8 0.18
20 31 0.69
21 5 0.11
22 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
TATATATTATGTATATTTTC
Found at i:101564026 original size:30 final size:31
Alignment explanation
Indices: 101563992--101564058 Score: 79
Period size: 30 Copynumber: 2.2 Consensus size: 31
101563982 TAAATACCAT
101563992 CTATATTG-TGT-T-TATTTTTTTATACATATA
1 CTATATTGTTGTATGTA-TTTTTTATACATA-A
*
101564022 CTATA-TGTTGTATGTATTTTTTATATATAA
1 CTATATTGTTGTATGTATTTTTTATACATAA
101564052 CTATATT
1 CTATATT
101564059 ATACGTATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
29 2 0.06
30 14 0.44
31 14 0.44
32 2 0.06
ACGTcount: A:0.28, C:0.06, G:0.07, T:0.58
Consensus pattern (31 bp):
CTATATTGTTGTATGTATTTTTTATACATAA
Found at i:101564328 original size:26 final size:26
Alignment explanation
Indices: 101564299--101564362 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 26
101564289 CCATATTATG
101564299 TTTTTATATTTAT-TATGTATATACTT
1 TTTTTATATTTATATATGTATATA-TT
101564325 TTTTTA-ATATTATATATGTATATATT
1 TTTTTATAT-TTATATATGTATATATT
*
101564351 TTTAATATATTT
1 TTT-TTATATTT
101564363 GCGTATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
25 2 0.06
26 15 0.45
27 14 0.42
28 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (26 bp):
TTTTTATATTTATATATGTATATATT
Found at i:101564329 original size:27 final size:27
Alignment explanation
Indices: 101564299--101564362 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
101564289 CCATATTATG
*
101564299 TTTTTATATTTAT-TATGTATATACTT
1 TTTTTATATTTATATATGTATATATTT
101564325 TTTTTA-ATATTATATATGTATATATTT
1 TTTTTATAT-TTATATATGTATATATTT
**
101564352 TTAATATATTT
1 TTTTTATATTT
101564363 GCGTATATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
25 2 0.06
26 10 0.31
27 18 0.56
28 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (27 bp):
TTTTTATATTTATATATGTATATATTT
Found at i:101569212 original size:77 final size:77
Alignment explanation
Indices: 101569085--101569239 Score: 274
Period size: 77 Copynumber: 2.0 Consensus size: 77
101569075 TAGTCCTGCT
* *
101569085 GATCCACTCGTTCCAAATTTGGACGATCCAGTAGAAATAGCCAATTTGAAAATCGGTGATCACGA
1 GATCCACTCGTTCCAAATTTGGACGATCCAGCAGAAATAGCCAAGTTGAAAATCGGTGATCACGA
101569150 GGTTCAAGAGAA
66 GGTTCAAGAGAA
* *
101569162 GATCCACTCGTTCCAAATTTGGACGATCCAGCAGAAATAGCTAAGTTGAAAATCGTTGATCACGA
1 GATCCACTCGTTCCAAATTTGGACGATCCAGCAGAAATAGCCAAGTTGAAAATCGGTGATCACGA
101569227 GGTTCAAGAGAA
66 GGTTCAAGAGAA
101569239 G
1 G
101569240 TATAGGAGCT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (77 bp):
GATCCACTCGTTCCAAATTTGGACGATCCAGCAGAAATAGCCAAGTTGAAAATCGGTGATCACGA
GGTTCAAGAGAA
Found at i:101577034 original size:15 final size:15
Alignment explanation
Indices: 101577018--101577052 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
101577008 GCTGAGGTAT
101577018 TTTC-AATTTCTGTA
1 TTTCAAATTTCTGTA
101577032 TTTCAAATTTCTGT-
1 TTTCAAATTTCTGTA
101577046 TTTCAAA
1 TTTCAAA
101577053 AATCGACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.26, C:0.14, G:0.06, T:0.54
Consensus pattern (15 bp):
TTTCAAATTTCTGTA
Found at i:101577037 original size:14 final size:13
Alignment explanation
Indices: 101577017--101577051 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 13
101577007 CGCTGAGGTA
101577017 TTTTCAATTTCTG
1 TTTTCAATTTCTG
101577030 TATTTCAAATTTCTG
1 T-TTTC-AATTTCTG
101577045 TTTTCAA
1 TTTTCAA
101577052 AAATCGACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.15
14 8 0.40
15 9 0.45
ACGTcount: A:0.23, C:0.14, G:0.06, T:0.57
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:101577097 original size:87 final size:87
Alignment explanation
Indices: 101576951--101577174 Score: 315
Period size: 87 Copynumber: 2.6 Consensus size: 87
101576941 TTGATGTTTT
* * * * * **
101576951 ATTTCTGTTCTCAGAAATCGACTCATATTGCAAGAAGTGAGTTAAGCCTCAGGGTACGCTGAGGT
1 ATTTCTGTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
101577016 ATTTTCAATTTCTGTATTTCAA
66 AATTTCAATTTCTGTATTTCAA
*
101577038 ATTTCTGTTTTCAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 ATTTCTGTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
101577103 AATTTCAATTTCTGTTTTTCAA
66 AATTTCAATTTCTGTATTTCAA
* *
101577125 A-TTCTGTTTTCTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 ATTTCTGTTTTC--AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT
101577175 TTTTAATTTC
Statistics
Matches: 122, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
86 10 0.08
87 78 0.64
88 34 0.28
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (87 bp):
ATTTCTGTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
AATTTCAATTTCTGTATTTCAA
Found at i:101577141 original size:16 final size:14
Alignment explanation
Indices: 101577105--101577134 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
101577095 GCTGAGGTAA
*
101577105 TTTCAATTTCTGTT
1 TTTCAAATTCTGTT
101577119 TTTCAAATTCTGTT
1 TTTCAAATTCTGTT
101577133 TT
1 TT
101577135 CTTCAAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.13, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTCAAATTCTGTT
Found at i:101577204 original size:55 final size:54
Alignment explanation
Indices: 101577117--101577284 Score: 255
Period size: 55 Copynumber: 3.0 Consensus size: 54
101577107 TCAATTTCTG
*
101577117 TTTTTCAAATTCTGTTTTCTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTT-AATTTCTG-TTT-TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
101577174 TTTTTAATTTCTGTTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTTAATTTCTGTTTTTCA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* **
101577229 TTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
1 TTTTTAATTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
101577284 T
1 T
101577285 CGGGGCACGC
Statistics
Matches: 105, Mismatches: 4, Indels: 6
0.91 0.03 0.05
Matches are distributed among these distances:
54 4 0.04
55 88 0.84
56 8 0.08
57 5 0.05
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (54 bp):
TTTTTAATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:101577324 original size:73 final size:73
Alignment explanation
Indices: 101577229--101577603 Score: 257
Period size: 73 Copynumber: 5.2 Consensus size: 73
101577219 GAGTTGAGCC
* * *
101577229 TTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACG
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGGCACG
*
101577294 CCGAGGTA
66 CTGAGGTA
* ** * **
101577302 TTTTAAATTTCTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGATACG
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGGCACG
101577367 CTGAGGTA
66 CTGAGGTA
* * * * ** ** * * ** * ***
101577375 ATTTCAATTTCTATTTTTC-AAATTC-TGTTTTCTT-C-A-AAATCAACTCATATTGCGAGAGGT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCT-CG-G-GG-
* * *
101577435 GA-GTTGAGCCT-
62 CACGCTGAG-GTA
* * *
101577446 TTTT-AATTTCTGTTTTTCAGAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCATG
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGGCACG
101577510 AC-GAGGTA
66 -CTGAGGTA
* * ** * **
101577518 TTTTAAATTCCTGTTTGTC-AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGATACG
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGGCACG
101577582 CTGAGGTA
66 CTGAGGTA
* *
101577590 ATTTCAATTTCTGT
1 TTTTAAATTTCTGT
101577604 CTTTAATTTC
Statistics
Matches: 221, Mismatches: 66, Indels: 31
0.69 0.21 0.10
Matches are distributed among these distances:
68 6 0.03
69 2 0.01
70 15 0.07
71 20 0.09
72 75 0.34
73 92 0.42
74 3 0.01
75 8 0.04
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (73 bp):
TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGGCACG
CTGAGGTA
Found at i:101577475 original size:55 final size:57
Alignment explanation
Indices: 101577388--101577500 Score: 169
Period size: 55 Copynumber: 2.0 Consensus size: 57
101577378 TCAATTTCTA
**
101577388 TTTTTCAAATTCTGTTTTCTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTTCAAATTCTGTTTTCTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
*
101577445 TTTTT-AATTTCTG-TTT-TTCAGAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
1 TTTTTCAAATTCTGTTTTCTTCA-AAATCAACTCATATTGCGAGAAATGAGTTGAGCC
101577500 T
1 T
101577501 CGGGGCATGA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
54 4 0.08
55 36 0.69
56 7 0.13
57 5 0.10
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (57 bp):
TTTTTCAAATTCTGTTTTCTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
Found at i:101577590 original size:215 final size:214
Alignment explanation
Indices: 101577174--101577713 Score: 917
Period size: 216 Copynumber: 2.5 Consensus size: 214
101577164 GAGTTGAGCC
101577174 TTTTTAATTTCTG-TTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTAATT
1 TTTTTAATTTCTGTTTTTTCA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTAATT
* *
101577238 TCTATTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTAT
65 TCTGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGACGAGGTAT
*
101577303 TTTAAATTTCTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGATACGC
130 TTTAAATTCCTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGATACGC
101577368 TGAGGTAATTTCAATTTCTA
195 TGAGGTAATTTCAATTTCTA
*
101577388 TTTTTCAAATTCTGTTTTCTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTAAT
1 TTTTT-AATTTCTGTTTT-TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTAAT
* *
101577453 TTCTGTTTTTCAGAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCATGACGAGGTA
64 TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGACGAGGTA
101577518 TTTTAAATTCCTGTTTGTC-AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGATACG
129 TTTTAAATTCCTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGATACG
*
101577582 CTGAGGTAATTTCAATTTCTG
194 CTGAGGTAATTTCAATTTCTA
* *
101577603 TCTTTAATTTCTG-CTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTTAATTT
1 TTTTTAATTTCTGTTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTAATTT
* **
101577666 CTGTTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 CTGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCG
101577714 AGACATATTG
Statistics
Matches: 309, Mismatches: 14, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
211 53 0.17
212 38 0.12
213 2 0.01
214 12 0.04
215 76 0.25
216 124 0.40
217 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (214 bp):
TTTTTAATTTCTGTTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTAATTT
CTGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGACGAGGTATT
TTAAATTCCTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGATACGCT
GAGGTAATTTCAATTTCTA
Found at i:101577674 original size:53 final size:54
Alignment explanation
Indices: 101577605--101577711 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
101577595 AATTTCTGTC
*
101577605 TTTAATTTCTGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTAATTTCTGCTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
101577658 TTTAATTTCTGTTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTAATTTCTGCTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCT
101577712 CGAGACATAT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 16 0.31
54 35 0.69
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (54 bp):
TTTAATTTCTGCTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCT
Found at i:101579675 original size:3 final size:3
Alignment explanation
Indices: 101579664--101579711 Score: 69
Period size: 3 Copynumber: 15.7 Consensus size: 3
101579654 TTTTTTCTAA
* *
101579664 TAT TGT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
101579710 TA
1 TA
101579712 GAGTATACTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:101580034 original size:20 final size:20
Alignment explanation
Indices: 101579979--101580055 Score: 68
Period size: 20 Copynumber: 3.8 Consensus size: 20
101579969 ATTTTCTTAT
101579979 TATATTATTATGTATATTATTC
1 TATA-TATTATGTATATT-TTC
* *
101580001 T-TTTAAATAT-TATATTTTC
1 TATAT-ATTATGTATATTTTC
* *
101580020 TATATATTATGTATATATTA
1 TATATATTATGTATATTTTC
*
101580040 TATATATTACGTATAT
1 TATATATTATGTATAT
101580056 ATCTAGTAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
19 8 0.18
20 31 0.69
21 5 0.11
22 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
TATATATTATGTATATTTTC
Found at i:101580214 original size:30 final size:30
Alignment explanation
Indices: 101580180--101580245 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
101580170 TAAATACCAT
*
101580180 CTATATTGTGTTTAT-T-TTTTTATACATATA
1 CTATATTGT-TGTATGTATTTTTATACATA-A
*
101580210 CTATA-TGTTGTATGTATTTTTATATATAA
1 CTATATTGTTGTATGTATTTTTATACATAA
101580239 CTATATT
1 CTATATT
101580246 ATACGTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 4 0.13
29 10 0.32
30 17 0.55
ACGTcount: A:0.29, C:0.06, G:0.08, T:0.58
Consensus pattern (30 bp):
CTATATTGTTGTATGTATTTTTATACATAA
Found at i:101580513 original size:26 final size:26
Alignment explanation
Indices: 101580484--101580546 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
101580474 CCATATTATG
*
101580484 TTTTTATATTTAT-TATGTATATACT
1 TTTTTATATTTATATATGTATATATT
101580509 TTTTTA-ATATTATATATGTATATATT
1 TTTTTATAT-TTATATATGTATATATT
*
101580535 TTTAATATATTT
1 TTT-TTATATTT
101580547 GCGTATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 2 0.06
25 10 0.31
26 14 0.44
27 4 0.12
28 2 0.06
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (26 bp):
TTTTTATATTTATATATGTATATATT
Found at i:101588960 original size:19 final size:19
Alignment explanation
Indices: 101588936--101588975 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
101588926 AAACATGAAT
*
101588936 GAATAAATAATATTTCATA
1 GAATAAAAAATATTTCATA
*
101588955 GAATAAAAAATATTTTATA
1 GAATAAAAAATATTTCATA
101588974 GA
1 GA
101588976 CATCATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (19 bp):
GAATAAAAAATATTTCATA
Found at i:101590416 original size:25 final size:25
Alignment explanation
Indices: 101590382--101590432 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
101590372 GGGTTAAATT
*
101590382 AATTTGTATGTGAATTAGATTTTCA
1 AATTTGTATGTGAATAAGATTTTCA
*
101590407 AATTTGTATGTGAATAAGTTTTTCA
1 AATTTGTATGTGAATAAGATTTTCA
101590432 A
1 A
101590433 GCGATATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (25 bp):
AATTTGTATGTGAATAAGATTTTCA
Found at i:101596907 original size:21 final size:22
Alignment explanation
Indices: 101596869--101596910 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
101596859 AACTTTTTAA
*
101596869 TATTAATTATATTTAATATTTT
1 TATTAATTATATTGAATATTTT
*
101596891 TATT-ATTGTATTGAATATTT
1 TATTAATTATATTGAATATTT
101596911 AAAATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (22 bp):
TATTAATTATATTGAATATTTT
Found at i:101602652 original size:25 final size:24
Alignment explanation
Indices: 101602614--101602822 Score: 83
Period size: 25 Copynumber: 8.5 Consensus size: 24
101602604 TTTAGCTCTT
*
101602614 ATGAGCATCCCGATATATGGCTTGC
1 ATGAGCTTCCCGATATATGGCTT-C
*
101602639 ATGAGCTTCTCGAT-TAATGGCTCTC
1 ATGAGCTTCCCGATAT-ATGGCT-TC
*
101602664 -TGGAGCTTTTCC-ATAT-TGGCTTAC
1 AT-GAGC-TTCCCGATATATGGCTT-C
*
101602688 ATGAGTTTCCCGAT-TAATGGCTCTC
1 ATGAGCTTCCCGATAT-ATGGCT-TC
* * ** *
101602713 -TAGTGCTTCCTGATAT-TAACTAGC
1 AT-GAGCTTCCCGATATATGGCT-TC
* * *
101602737 ATGAGCTTCTCGAT-TACGGCTCTT
1 ATGAGCTTCCCGATATATGGCT-TC
* * *
101602761 ATGAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGATATATGGCT-TC
* *
101602786 ATGAGCTTCCCGTTATATGGCTTGG
1 ATGAGCTTCCCGATATATGGCTT-C
*
101602811 AAGAGCTTCCCG
1 ATGAGCTTCCCG
101602823 GTTACATGTT
Statistics
Matches: 135, Mismatches: 32, Indels: 34
0.67 0.16 0.17
Matches are distributed among these distances:
23 7 0.05
24 41 0.30
25 80 0.59
26 7 0.05
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (24 bp):
ATGAGCTTCCCGATATATGGCTTC
Found at i:101602729 original size:49 final size:49
Alignment explanation
Indices: 101602623--101602807 Score: 148
Period size: 49 Copynumber: 3.8 Consensus size: 49
101602613 TATGAGCATC
* * *
101602623 CCGATATATGGCTTGCATGAGCTTCTCGATTAATGGCTCTCTGGAGCTTTT
1 CCGATAT-TGGCTTACATGAGCTTCCCGATTAATGGCTCTCTAGAGC-TTT
* *
101602674 CC-ATATTGGCTTACATGAGTTTCCCGATTAATGGCTCTCTAGTGC-TT
1 CCGATATTGGCTTACATGAGCTTCCCGATTAATGGCTCTCTAGAGCTTT
** * * *
101602721 CCTGATATTAAC-TAGCATGAGCTTCTCGATT-ACGGCTCT-TATGAGCTTC
1 CC-GATATTGGCTTA-CATGAGCTTCCCGATTAATGGCTCTCTA-GAGCTTT
* * *
101602770 CCGTTACATGGCTCACATGAGCTTCCCG-TTATATGGCT
1 CCGATA-TTGGCTTACATGAGCTTCCCGATTA-ATGGCT
101602808 TGGAAGAGCT
Statistics
Matches: 106, Mismatches: 19, Indels: 19
0.74 0.13 0.13
Matches are distributed among these distances:
47 6 0.06
48 17 0.16
49 71 0.67
50 10 0.09
51 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (49 bp):
CCGATATTGGCTTACATGAGCTTCCCGATTAATGGCTCTCTAGAGCTTT
Found at i:101606633 original size:30 final size:31
Alignment explanation
Indices: 101606599--101606661 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
101606589 TATTTTATTA
*
101606599 TTAA-TTTTCTTATTATTTTA-AAGGCATTTG
1 TTAATTTTTATTATTATTTTAGAA-GCATTTG
*
101606629 TTAATTTTTATTATTTTTTTAGAAGCATTTG
1 TTAATTTTTATTATTATTTTAGAAGCATTTG
101606660 TT
1 TT
101606662 TGTTAAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 4 0.14
31 23 0.79
32 2 0.07
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (31 bp):
TTAATTTTTATTATTATTTTAGAAGCATTTG
Found at i:101606777 original size:18 final size:18
Alignment explanation
Indices: 101606742--101606781 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
101606732 GAAATATTTA
*
101606742 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTATAATAT
101606760 TTTTGATGTATTATATATAT
1 TTTTGATGT-TTATA-ATAT
101606780 TT
1 TT
101606782 AAAAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 4 0.21
20 6 0.32
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (18 bp):
TTTTGATGTTTATAATAT
Found at i:101606816 original size:13 final size:11
Alignment explanation
Indices: 101606781--101606812 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
101606771 TATATATATT
101606781 TAAAAATAATA
1 TAAAAATAATA
101606792 TAAAAATAATA
1 TAAAAATAATA
101606803 TAAAAA-AATA
1 TAAAAATAATA
101606813 ATATGGGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.19
11 17 0.81
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:101615751 original size:14 final size:14
Alignment explanation
Indices: 101615732--101615759 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
101615722 GGCAAATTCA
101615732 AGTTTGGCAAGATT
1 AGTTTGGCAAGATT
101615746 AGTTTGGCAAGATT
1 AGTTTGGCAAGATT
101615760 TGACATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (14 bp):
AGTTTGGCAAGATT
Found at i:101618929 original size:6 final size:6
Alignment explanation
Indices: 101618886--101618926 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
101618876 GAATTTCAAA
* *
101618886 CATGTT CATGTT CATGTT CATGTT CATGTC CATGTC CATGT
1 CATGTT CATGTT CATGTT CATGTT CATGTT CATGTT CATGT
101618927 CCAGCTGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (6 bp):
CATGTT
Found at i:101634836 original size:21 final size:22
Alignment explanation
Indices: 101634810--101634863 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
101634800 TTCCTTGTTT
101634810 CACACGGGCGTGTG-C-CTCTGC
1 CACACGGGCGTGTGTCTCTCT-C
101634831 CACAC-GGCTGTGTGTCTCTCTC
1 CACACGGGC-GTGTGTCTCTCTC
101634853 CACACGGGCGT
1 CACACGGGCGT
101634864 TTTGACTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
20 3 0.10
21 10 0.34
22 9 0.31
23 7 0.24
ACGTcount: A:0.11, C:0.37, G:0.30, T:0.22
Consensus pattern (22 bp):
CACACGGGCGTGTGTCTCTCTC
Found at i:101640407 original size:33 final size:33
Alignment explanation
Indices: 101640365--101640445 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 33
101640355 TGGCCCAGCC
* *
101640365 ATGGCCTTATATTTATAGTGCCATAACCCAATT
1 ATGGCCTTATATTTAGAATGCCATAACCCAATT
* *
101640398 ATGGCCTTATCA-TCAGAATGCCATAGCCCAATT
1 ATGGCCTTAT-ATTTAGAATGCCATAACCCAATT
*
101640431 ATGGTCTTATATTTA
1 ATGGCCTTATATTTA
101640446 ATCATTGTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
32 1 0.03
33 38 0.95
34 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (33 bp):
ATGGCCTTATATTTAGAATGCCATAACCCAATT
Found at i:101650799 original size:44 final size:40
Alignment explanation
Indices: 101650741--101650816 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
101650731 TCTTCTTATA
101650741 TATATATATTTATATATATATTTAGAATATACATTCTTCT
1 TATATATATTTATATATATATTTAGAATATACATTCTTCT
101650781 TATATATATTTATATATATATTTAGAATATACATTC
1 TATATATATTTATATATATATTTAGAATATACATTC
101650817 GCTCTCAGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (40 bp):
TATATATATTTATATATATATTTAGAATATACATTCTTCT
Found at i:101654342 original size:5 final size:5
Alignment explanation
Indices: 101654334--101654370 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
101654324 TTTGGAAGAC
101654334 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTATAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT-TAT T
101654371 AGGATAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:101660838 original size:5 final size:5
Alignment explanation
Indices: 101660802--101660875 Score: 60
Period size: 5 Copynumber: 14.0 Consensus size: 5
101660792 TAATCTTTCT
* * * *
101660802 TTTTA TTTTTA TTTATTA TTTTC CTTTC TTTTA TTTTA TTATT- TATTA
1 TTTTA -TTTTA -TT-TTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA
101660850 TTTTA TTTTTA TTTTA TTTTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA
101660876 GTTAAATATT
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
4 2 0.03
5 36 0.62
6 17 0.29
7 3 0.05
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:101660846 original size:30 final size:31
Alignment explanation
Indices: 101660796--101660872 Score: 97
Period size: 30 Copynumber: 2.5 Consensus size: 31
101660786 GCAACCTAAT
101660796 CTTTCTTTT-TATTT-TTATTTATTATTTT-C
1 CTTTCTTTTAT-TTTATTATTTATTATTTTAC
*
101660825 CTTTCTTTTATTTTATTATTTATTATTTTAT
1 CTTTCTTTTATTTTATTATTTATTATTTTAC
* *
101660856 TTTTATTTTATTTTATT
1 CTTTCTTTTATTTTATT
101660873 TTAGTTAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 12 0.29
30 15 0.36
31 15 0.36
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (31 bp):
CTTTCTTTTATTTTATTATTTATTATTTTAC
Found at i:101660861 original size:21 final size:20
Alignment explanation
Indices: 101660830--101660875 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
101660820 TTTTCCTTTC
101660830 TTTTATTTTATTATT-TATTA
1 TTTTATTTTATT-TTATATTA
*
101660850 TTTTATTTTTATTTTATTTTA
1 TTTTA-TTTTATTTTATATTA
101660871 TTTTA
1 TTTTA
101660876 GTTAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTATTTTATTTTATATTA
Found at i:101661028 original size:42 final size:42
Alignment explanation
Indices: 101660982--101661072 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
101660972 ATCCATGGTA
*
101660982 CCAAACAGTTCAATTCCAACCCAAAATGCCATATCCCTGCTG
1 CCAAACAGTTCAATTCCAACCCAAAATGCCATATCCCTGCAG
** * * *
101661024 CCAAACAGTTTTATTCCAGCCCAGAATGCCATATCTCTGCAG
1 CCAAACAGTTCAATTCCAACCCAAAATGCCATATCCCTGCAG
*
101661066 CCGAACA
1 CCAAACA
101661073 ATCCTATTCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.32, C:0.34, G:0.12, T:0.22
Consensus pattern (42 bp):
CCAAACAGTTCAATTCCAACCCAAAATGCCATATCCCTGCAG
Found at i:101661081 original size:42 final size:42
Alignment explanation
Indices: 101660994--101661093 Score: 119
Period size: 42 Copynumber: 2.4 Consensus size: 42
101660984 AAACAGTTCA
* * * * **
101660994 ATTCCAACCCAAAATGCCATATCCCTGCTGCCAAACAGTTTT
1 ATTCCAGCCCAGAATGCCATATCCCTGCAGCCAAACAATCCT
* *
101661036 ATTCCAGCCCAGAATGCCATATCTCTGCAGCCGAACAATCCT
1 ATTCCAGCCCAGAATGCCATATCCCTGCAGCCAAACAATCCT
101661078 ATTCCAGCCCTAGAAT
1 ATTCCAGCCC-AGAAT
101661094 CCCCAAAACC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 44 0.90
43 5 0.10
ACGTcount: A:0.30, C:0.34, G:0.12, T:0.24
Consensus pattern (42 bp):
ATTCCAGCCCAGAATGCCATATCCCTGCAGCCAAACAATCCT
Found at i:101662098 original size:118 final size:118
Alignment explanation
Indices: 101661872--101662084 Score: 372
Period size: 118 Copynumber: 1.8 Consensus size: 118
101661862 AGTTTTCCAT
* *
101661872 GGTTATGAGTACAGCTTAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGCCATT
101661937 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
** * *
101661990 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACGGGGGTATGGTGCTTGGGTTGCCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGCCATT
101662055 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
101662085 TTGGGTAAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 89 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGCCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:101662243 original size:11 final size:11
Alignment explanation
Indices: 101662229--101662278 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
101662219 ATAAAATTTA
101662229 AAAAAAGAAAG
1 AAAAAAGAAAG
*
101662240 AAAAAAAGAAAA
1 -AAAAAAGAAAG
101662252 AAAAAAGAAA-
1 AAAAAAGAAAG
101662262 AAAAGAAG-AAG
1 AAAA-AAGAAAG
101662273 AAAAAA
1 AAAAAA
101662279 ATAAGTACTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
10 8 0.23
11 17 0.49
12 10 0.29
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:101662247 original size:8 final size:8
Alignment explanation
Indices: 101662228--101662268 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
101662218 AATAAAATTT
101662228 AAAAAAAG
1 AAAAAAAG
101662236 AAAGAAAA-
1 AAA-AAAAG
*
101662244 AAAGAAA-
1 AAAAAAAG
101662251 AAAAAAAG
1 AAAAAAAG
101662259 AAAAAAAG
1 AAAAAAAG
101662267 AA
1 AA
101662269 GAAGAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 9 0.31
8 16 0.55
9 4 0.14
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:101662251 original size:19 final size:19
Alignment explanation
Indices: 101662228--101662278 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 19
101662218 AATAAAATTT
101662228 AAAAAAAGAAAGAAAAAAAG
1 AAAAAAA-AAAGAAAAAAAG
101662248 AAAAAAAAAAGAAAAAAAG
1 AAAAAAAAAAGAAAAAAAG
101662267 AAGAAGAAAAAA
1 AA-AA-AAAAAA
101662279 ATAAGTACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 14 0.48
20 9 0.31
21 6 0.21
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAGAAAAAAAG
Found at i:101662253 original size:22 final size:23
Alignment explanation
Indices: 101662228--101662279 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
101662218 AATAAAATTT
101662228 AAAAAAAGAAAGAAAAAAAGAAA-
1 AAAAAAAGAAA-AAAAAAAGAAAG
*
101662251 AAAAAAAGAAAAAAAGAAG-AAG
1 AAAAAAAGAAAAAAAAAAGAAAG
101662273 AAAAAAA
1 AAAAAAA
101662280 TAAGTACTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 2 0.07
22 14 0.52
23 11 0.41
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (23 bp):
AAAAAAAGAAAAAAAAAAGAAAG
Found at i:101662928 original size:10 final size:10
Alignment explanation
Indices: 101662909--101662937 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
101662899 TTTTAGGATT
101662909 TTAT-TTTAA
1 TTATCTTTAA
101662918 TTATCTTTAA
1 TTATCTTTAA
101662928 TTATCTTTAA
1 TTATCTTTAA
101662938 CTAAATGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.21
10 15 0.79
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:101663957 original size:30 final size:30
Alignment explanation
Indices: 101663923--101663985 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
101663913 ACTTAAGAAG
101663923 CAAATG-CTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTT-TAAAATAATAAAAAAATTAA
*
101663953 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
101663983 CAA
1 CAA
101663986 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:101666156 original size:15 final size:15
Alignment explanation
Indices: 101666136--101666168 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
101666126 AATCAAAAAA
101666136 TAAAA-TAAAATAATT
1 TAAAATTAAAA-AATT
101666151 TAAAATTAAAAAATT
1 TAAAATTAAAAAATT
101666166 TAA
1 TAA
101666169 CATGAAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAATTAAAAAATT
Found at i:101678477 original size:21 final size:23
Alignment explanation
Indices: 101678430--101678483 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
101678420 CATTCAAGAT
**
101678430 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
101678453 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
101678474 AAAAT-ATATA
1 AAAATAATATA
101678484 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:101678528 original size:25 final size:25
Alignment explanation
Indices: 101678431--101678587 Score: 72
Period size: 25 Copynumber: 6.3 Consensus size: 25
101678421 ATTCAAGATA
* * *
101678431 AAATAATATATAAAACTCTT-TAA-
1 AAATAATATATAAAAATATTAAAAT
*
101678454 AAATAATATATAAACAAT-TCAAAAT
1 AAATAATATATAAA-AATATTAAAAT
* * * *
101678479 ATATAATGTGTAAAAAAAAGTTTAAAAT
1 AAATAATATAT-AAAAATA--TTAAAAT
* * *
101678507 ACATAATATATGAAAATATTAAAGT
1 AAATAATATATAAAAATATTAAAAT
* *
101678532 AAATAATGTATAAAAAT-TTGAAAT
1 AAATAATATATAAAAATATTAAAAT
* *** *
101678556 GAACGTTATATAAAAA-GTTAAAAT
1 AAATAATATATAAAAATATTAAAAT
*
101678580 AGATAATA
1 AAATAATA
101678588 ACCAAAAATG
Statistics
Matches: 96, Mismatches: 30, Indels: 15
0.68 0.21 0.11
Matches are distributed among these distances:
23 15 0.16
24 29 0.30
25 30 0.31
26 3 0.03
27 5 0.05
28 14 0.15
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (25 bp):
AAATAATATATAAAAATATTAAAAT
Found at i:101678722 original size:44 final size:42
Alignment explanation
Indices: 101678647--101678754 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 42
101678637 CAAGAGTAAA
* * *
101678647 AAATATATATAAGAAAAATAATAATGAAA-ATAATATTAGTATAT
1 AAATATAAAT-AGAAAAATAATAATGAAATATAATAATAGT-T-G
*
101678691 AAATATAAATAGAAATATAATAAATAGAAATATAATAATAGTTG
1 AAATATAAATAGAAAAATAAT-AAT-GAAATATAATAATAGTTG
*
101678735 AAATATAAATAGATAAATAA
1 AAATATAAATAGAAAAATAA
101678755 AAATTAGATA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
43 10 0.18
44 30 0.55
45 5 0.09
46 10 0.18
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (42 bp):
AAATATAAATAGAAAAATAATAATGAAATATAATAATAGTTG
Found at i:101678739 original size:17 final size:15
Alignment explanation
Indices: 101678695--101678742 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
101678685 GTATATAAAT
101678695 ATAAATAGAAATATA
1 ATAAATAGAAATATA
101678710 ATAAATAGAAATATA
1 ATAAATAGAAATATA
*
101678725 ATAATAGTTGAAATATA
1 ATAA-A-TAGAAATATA
101678742 A
1 A
101678743 ATAGATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 19 0.63
16 1 0.03
17 10 0.33
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.29
Consensus pattern (15 bp):
ATAAATAGAAATATA
Found at i:101678762 original size:15 final size:14
Alignment explanation
Indices: 101678689--101678775 Score: 63
Period size: 15 Copynumber: 6.0 Consensus size: 14
101678679 ATATTAGTAT
*
101678689 ATAAATATAAATAG
1 ATAAATAAAAATAG
101678703 A-AATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
101678718 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
101678732 TTGAAATATAAATAG
1 AT-AAATAAAAATAG
101678747 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
101678762 ATAAA-AAATAATAG
1 ATAAATAAA-AATAG
101678776 TATTAGAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
13 2 0.03
14 23 0.38
15 33 0.55
16 2 0.03
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:101678772 original size:44 final size:44
Alignment explanation
Indices: 101678691--101678776 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
101678681 ATTAGTATAT
*
101678691 AAATATAAATAGAAATATAATAAATAGAAATATAATAATAGTTG
1 AAATATAAATAGAAATATAATAAATAGAAATAAAATAATAGTTG
101678735 AAATATAAATAGATAA-ATAA-AAATTAGATAA-AAAATAATAGT
1 AAATATAAATAGA-AATATAATAAA-TAGA-AATAAAATAATAGT
101678777 ATTAGAATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
43 3 0.08
44 31 0.82
45 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (44 bp):
AAATATAAATAGAAATATAATAAATAGAAATAAAATAATAGTTG
Found at i:101683163 original size:39 final size:39
Alignment explanation
Indices: 101683120--101683219 Score: 155
Period size: 39 Copynumber: 2.6 Consensus size: 39
101683110 TCGTGATCTA
* *
101683120 AAGCCCGAAATCTAGCTGAAGCACATAAGTGCTAAACGG
1 AAGCCCGAAAGCTAACTGAAGCACATAAGTGCTAAACGG
* *
101683159 AAGCCCGGAGGCTAACTGAAGCACATAAGTGCTAAACGG
1 AAGCCCGAAAGCTAACTGAAGCACATAAGTGCTAAACGG
*
101683198 AAGCCCGAAGGCTAACTGAAGC
1 AAGCCCGAAAGCTAACTGAAGC
101683220 TCATCAGAGC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.37, C:0.24, G:0.26, T:0.13
Consensus pattern (39 bp):
AAGCCCGAAAGCTAACTGAAGCACATAAGTGCTAAACGG
Found at i:101683201 original size:21 final size:21
Alignment explanation
Indices: 101683137--101683201 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
101683127 AAATCTAGCT
101683137 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
*** *
101683158 GAAGC-CCGGAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACG
101683176 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
101683197 GAAGC
1 GAAGC
101683202 CCGAAGGCTA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 8 0.24
19 6 0.18
20 6 0.18
21 13 0.39
ACGTcount: A:0.38, C:0.22, G:0.28, T:0.12
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:101694305 original size:13 final size:13
Alignment explanation
Indices: 101694287--101694311 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101694277 ATAGTTGGGG
101694287 AGCTTTGAAACAT
1 AGCTTTGAAACAT
101694300 AGCTTTGAAACA
1 AGCTTTGAAACA
101694312 GATGAAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (13 bp):
AGCTTTGAAACAT
Found at i:101710813 original size:18 final size:16
Alignment explanation
Indices: 101710780--101710826 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
101710770 TTATGTGTAC
*
101710780 AATATAAAAATTTTAAA
1 AATA-AAAAATATTAAA
101710797 AATACATAAAATATTAAA
1 AATA-A-AAAATATTAAA
101710815 AATAAAAAATAT
1 AATAAAAAATAT
101710827 AATTCAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 7 0.26
17 6 0.22
18 14 0.52
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAAAAAATATTAAA
Found at i:101719597 original size:41 final size:41
Alignment explanation
Indices: 101719552--101719730 Score: 270
Period size: 41 Copynumber: 4.4 Consensus size: 41
101719542 TGTTTTACAA
* * *
101719552 AAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGTTTTTTGTT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTG-T
*
101719593 AAAACGCCGCTAAAAATCGGAGCATTAGCGGCGCTTTTTGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTGT
* *
101719634 AAAACGCCGCTAAAAACCGGAGCACTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTGT
* *
101719675 AAAACGCCGCTAAAAACCGGAGTATTAGCGGCGCTTTTAGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTGT
101719716 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
101719731 GTCATATAAC
Statistics
Matches: 128, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
41 108 0.84
42 20 0.16
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTGT
Found at i:101719819 original size:23 final size:22
Alignment explanation
Indices: 101719772--101719819 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
101719762 AAAAAATCAT
* *
101719772 AAACACTAATCTATAATCCTTA
1 AAACACTAAACTATAAACCTTA
*
101719794 AAACACTAAACTCCTAAACCTTA
1 AAACACTAAACT-ATAAACCTTA
101719817 AAA
1 AAA
101719820 AATCTTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (22 bp):
AAACACTAAACTATAAACCTTA
Found at i:101720182 original size:15 final size:15
Alignment explanation
Indices: 101720140--101720182 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
101720130 TATCATTATA
101720140 GTTTAAGGTTTAT-G
1 GTTTAAGGTTTATGG
* * *
101720154 TTTTAAGCTATATGG
1 GTTTAAGGTTTATGG
101720169 GTTTAAGGTTTATG
1 GTTTAAGGTTTATG
101720183 AGTTAACTAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.23, C:0.02, G:0.26, T:0.49
Consensus pattern (15 bp):
GTTTAAGGTTTATGG
Found at i:101720258 original size:15 final size:15
Alignment explanation
Indices: 101720233--101720286 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
101720223 AGGTTAGGTG
* *
101720233 TTAGGGGTTAAGGGT
1 TTAGGGTTTAAGAGT
* *
101720248 TAAGGGTTTAA-TGT
1 TTAGGGTTTAAGAGT
*
101720262 TTAGGGATTAAGAGT
1 TTAGGGTTTAAGAGT
101720277 TTAGGGTTTA
1 TTAGGGTTTA
101720287 GGTTAGTTAG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.39
Consensus pattern (15 bp):
TTAGGGTTTAAGAGT
Found at i:101720272 original size:22 final size:21
Alignment explanation
Indices: 101720238--101720288 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
101720228 AGGTGTTAGG
* *
101720238 GGTTAAGGGTTAAGGGTTTAA
1 GGTTTAGGGTTAAGAGTTTAA
* *
101720259 TGTTTAGGGATTAAGAGTTTAG
1 GGTTTAGGG-TTAAGAGTTTAA
101720281 GGTTTAGG
1 GGTTTAGG
101720289 TTAGTTAGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.37
Consensus pattern (21 bp):
GGTTTAGGGTTAAGAGTTTAA
Done.