Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 309 of 344
Found at i:102010760 original size:16 final size:14
Alignment explanation
Indices: 102010731--102010805 Score: 53
Period size: 16 Copynumber: 5.1 Consensus size: 14
102010721 GTTCATAATT
102010731 AAAGTTTTAAGGAG
1 AAAGTTTTAAGGAG
102010745 AAAGCTTTTGAAGGAG
1 AAAG-TTTT-AAGGAG
** * **
102010761 AGTGATCTT-AGTTG
1 AAAG-TTTTAAGGAG
102010775 AAAGTTTTAAGGAG
1 AAAGTTTTAAGGAG
102010789 AAAGCTTTTGAAGGAG
1 AAAG-TTTT-AAGGAG
102010805 A
1 A
102010806 GTGATCTTAG
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
13 3 0.07
14 16 0.36
15 8 0.18
16 18 0.40
ACGTcount: A:0.37, C:0.04, G:0.29, T:0.29
Consensus pattern (14 bp):
AAAGTTTTAAGGAG
Found at i:102010794 original size:44 final size:44
Alignment explanation
Indices: 102010731--102010820 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
102010721 GTTCATAATT
102010731 AAAGTTTTAAGGAGAAAGCTTTTGAAGGAGAGTGATCTTAGTTG
1 AAAGTTTTAAGGAGAAAGCTTTTGAAGGAGAGTGATCTTAGTTG
102010775 AAAGTTTTAAGGAGAAAGCTTTTGAAGGAGAGTGATCTTAGTTG
1 AAAGTTTTAAGGAGAAAGCTTTTGAAGGAGAGTGATCTTAGTTG
102010819 AA
1 AA
102010821 GTATAAGAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.31
Consensus pattern (44 bp):
AAAGTTTTAAGGAGAAAGCTTTTGAAGGAGAGTGATCTTAGTTG
Found at i:102025090 original size:3 final size:3
Alignment explanation
Indices: 102025082--102025116 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
102025072 AATTGAGTCT
102025082 TTA TTA TTA TTA TTA TTA TTA TTA TATA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TT
102025117 TGAAATGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:102025780 original size:50 final size:50
Alignment explanation
Indices: 102025705--102025852 Score: 269
Period size: 50 Copynumber: 3.0 Consensus size: 50
102025695 AACCTAAAAA
*
102025705 TTTAAATACGCTAAAGCATATGATATCTTCTACTTTGGAGATTGAAGGAG
1 TTTAAACACGCTAAAGCATATGATATCTTCTACTTTGGAGATTGAAGGAG
102025755 TTTAAACACGCTAAAGCATATGATATCTTCTACTTTGGAGATTGAAGGAG
1 TTTAAACACGCTAAAGCATATGATATCTTCTACTTTGGAGATTGAAGGAG
* *
102025805 TTTAAACATGCTAAAGCATATGATATCTTCCACTTTGGAGATTGAAGG
1 TTTAAACACGCTAAAGCATATGATATCTTCTACTTTGGAGATTGAAGG
102025853 GTTATGTTTA
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 95 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (50 bp):
TTTAAACACGCTAAAGCATATGATATCTTCTACTTTGGAGATTGAAGGAG
Found at i:102029022 original size:15 final size:14
Alignment explanation
Indices: 102028987--102029025 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
102028977 GTTTTAGTTC
102028987 ATATTTTATTTTAT
1 ATATTTTATTTTAT
102029001 ATATTTTATTTTGA-
1 ATATTTTATTTT-AT
102029015 ATTATTTTATT
1 A-TATTTTATT
102029026 AATTTTGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (14 bp):
ATATTTTATTTTAT
Found at i:102029287 original size:32 final size:29
Alignment explanation
Indices: 102029224--102029298 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
102029214 TTCATACTGT
* *
102029224 TTTATGTAAATATTGTTCTTTTAAATGTA
1 TTTATGTATATATTCTTCTTTTAAATGTA
* *
102029253 TTTATATGTATATATATCTTCTTTTGAATTTA
1 -TT-TATGTATATAT-TCTTCTTTTAAATGTA
102029285 TTTATGTATATATT
1 TTTATGTATATATT
102029299 ATTGTCATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 13 0.33
31 12 0.31
32 13 0.33
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (29 bp):
TTTATGTATATATTCTTCTTTTAAATGTA
Found at i:102040208 original size:14 final size:14
Alignment explanation
Indices: 102040189--102040221 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
102040179 GCACGTTAAA
102040189 AAAAATATAAAA-AT
1 AAAAATA-AAAATAT
102040203 AAAAATAAAAATAT
1 AAAAATAAAAATAT
102040217 AAAAA
1 AAAAA
102040222 GTTCAGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (14 bp):
AAAAATAAAAATAT
Found at i:102042558 original size:9 final size:9
Alignment explanation
Indices: 102042544--102042573 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
102042534 TTGAATTAAA
102042544 AAATTAATT
1 AAATTAATT
102042553 AAATTAATT
1 AAATTAATT
*
102042562 AAATTAAAT
1 AAATTAATT
102042571 AAA
1 AAA
102042574 AAATAGATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAATTAATT
Found at i:102051428 original size:4 final size:4
Alignment explanation
Indices: 102051419--102051575 Score: 314
Period size: 4 Copynumber: 39.2 Consensus size: 4
102051409 GATCATGCTG
102051419 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
102051467 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
102051515 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
102051563 ACAT ACAT ACAT A
1 ACAT ACAT ACAT A
102051576 TGCACGTTCA
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 153 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:102059193 original size:15 final size:15
Alignment explanation
Indices: 102059175--102059204 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
102059165 TATCTATTAT
102059175 CTATTTATTTTAAAA
1 CTATTTATTTTAAAA
102059190 CTATTTATTTTAAAA
1 CTATTTATTTTAAAA
102059205 TTTCGGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (15 bp):
CTATTTATTTTAAAA
Found at i:102059383 original size:22 final size:25
Alignment explanation
Indices: 102059334--102059381 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
102059324 TATATTATCT
102059334 TAAATATTTAATTAGATAATAAAAAA
1 TAAATATTTAATTA-ATAATAAAAAA
102059360 TAAATATTTAATT-A-AATAAAAA
1 TAAATATTTAATTAATAATAAAAA
102059382 TAGATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
24 1 0.05
26 13 0.59
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (25 bp):
TAAATATTTAATTAATAATAAAAAA
Found at i:102062704 original size:9 final size:9
Alignment explanation
Indices: 102062690--102062715 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
102062680 AAAAAATATT
102062690 ATATTAAAA
1 ATATTAAAA
102062699 ATATTAAAA
1 ATATTAAAA
102062708 ATATTAAA
1 ATATTAAA
102062716 TAAATAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
ATATTAAAA
Found at i:102067342 original size:126 final size:126
Alignment explanation
Indices: 102067116--102067349 Score: 362
Period size: 126 Copynumber: 1.9 Consensus size: 126
102067106 GTTTTAGCCT
* * *
102067116 TAAGAGGATATTCGAATATTCAATACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATCCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
* * *
102067181 CTTCGAATTCTTTAAATACCGACTATTGCCTTTATTTTGAAAATTTTTTAGAGTGAACTGG
66 CTTCGAAGTCTTTAAATACCGACTATTGCCATTATTTTAAAAATTTTTTAGAGTGAACTGG
* * * *
102067242 TAAGAGGATATCCGAATATTCAAGACAAAGAAAGAAAGCGAAACCCGGTACGTTAAGGTAGGATT
1 TAAGAGGATATCCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
102067307 CTTCGAAGTCTTTAAATACCGAAC-ATTGCCATTATTTTAAAAA
66 CTTCGAAGTCTTTAAATACCG-ACTATTGCCATTATTTTAAAAA
102067350 CAATTGAGAA
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
126 95 0.98
127 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (126 bp):
TAAGAGGATATCCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
CTTCGAAGTCTTTAAATACCGACTATTGCCATTATTTTAAAAATTTTTTAGAGTGAACTGG
Found at i:102067895 original size:18 final size:18
Alignment explanation
Indices: 102067872--102067913 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
102067862 ATAATGCTAC
*
102067872 AATAACCA-TAAACATAGT
1 AATAACCATTAAA-ATAAT
*
102067890 AATAACGATTAAAATAAT
1 AATAACCATTAAAATAAT
102067908 AATAAC
1 AATAAC
102067914 AACAACAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.24
Consensus pattern (18 bp):
AATAACCATTAAAATAAT
Found at i:102067938 original size:3 final size:3
Alignment explanation
Indices: 102067932--102068044 Score: 70
Period size: 3 Copynumber: 37.3 Consensus size: 3
102067922 AATAGAATAC
* * * *
102067932 AAT AAT AAT -AT ATT AAT AAA AAT AAT AAT -AT AAA AAT AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** ** *
102067978 AAA AAT -AT GTT TCT AAT AAT AAT AAAT CAAT AAT GAT AAT AAAT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT AAT -AAT A-AT
*
102068026 AAA AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
102068045 TTATTATTAT
Statistics
Matches: 84, Mismatches: 20, Indels: 12
0.72 0.17 0.10
Matches are distributed among these distances:
2 6 0.07
3 66 0.79
4 12 0.14
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:102067955 original size:14 final size:14
Alignment explanation
Indices: 102067932--102067985 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
102067922 AATAGAATAC
* *
102067932 AATAATAATATATT
1 AATAAAAATATATA
102067946 AATAAAAATA-ATA
1 AATAAAAATATATA
*
102067959 ATATAAAAATAATAAA
1 A-ATAAAAAT-ATATA
102067975 AATAAAAATAT
1 AATAAAAATAT
102067986 GTTTCTAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 3 0.09
14 19 0.56
15 9 0.26
16 3 0.09
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAATATATA
Found at i:102067969 original size:20 final size:21
Alignment explanation
Indices: 102067927--102067979 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
102067917 AACAAAATAG
**
102067927 AATACAATAATAATATATTAAT
1 AATA-AATAATAATATAAAAAT
102067949 AA-AAATAATAATATAAAAAT
1 AATAAATAATAATATAAAAAT
102067969 AATAAA-AATAA
1 AATAAATAATAA
102067980 AAATATGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 22 0.79
21 4 0.14
22 2 0.07
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (21 bp):
AATAAATAATAATATAAAAAT
Found at i:102067971 original size:23 final size:23
Alignment explanation
Indices: 102067945--102068038 Score: 80
Period size: 23 Copynumber: 3.7 Consensus size: 23
102067935 AATAATATAT
102067945 TAATAAAAATAATAATATAAAAA
1 TAATAAAAATAATAATATAAAAA
* ***
102067968 TAATAAAAATAAAAATATGTTTCTAA
1 TAATAAAAATAATAATA---TAAAAA
102067994 TAATAATAAATCAATAATGATAATAAA
1 TAATAA-AAAT-AATAAT-ATAA-AAA
102068021 TATATAAAAATAATAATA
1 TA-ATAAAAATAATAATA
102068039 ATAATATTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
23 16 0.29
25 1 0.02
26 16 0.29
27 12 0.22
28 9 0.16
29 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
TAATAAAAATAATAATATAAAAA
Found at i:102068011 original size:17 final size:16
Alignment explanation
Indices: 102067991--102068044 Score: 65
Period size: 17 Copynumber: 3.3 Consensus size: 16
102067981 AATATGTTTC
102067991 TAATAATAATAAATCAA
1 TAATAATAATAAAT-AA
*
102068008 TAATGATAATAAATATA
1 TAATAATAATAAATA-A
*
102068025 TAAAAATAAT-AATAA
1 TAATAATAATAAATAA
102068040 TAATA
1 TAATA
102068045 TTATTATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 5 0.16
16 5 0.16
17 22 0.69
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (16 bp):
TAATAATAATAAATAA
Found at i:102068451 original size:24 final size:24
Alignment explanation
Indices: 102068419--102068466 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
102068409 TCTTTTTGTA
*
102068419 GGCAAGTGGGGTGATGGAGTTAGT
1 GGCAAGTGGGGTAATGGAGTTAGT
102068443 GGCAAGTGGGGTAATGGAGTTAGT
1 GGCAAGTGGGGTAATGGAGTTAGT
102068467 AGGATGGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.04, G:0.48, T:0.25
Consensus pattern (24 bp):
GGCAAGTGGGGTAATGGAGTTAGT
Found at i:102068510 original size:13 final size:13
Alignment explanation
Indices: 102068492--102068528 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
102068482 GGTGATAGAG
102068492 TTAGTGGGGTGAT
1 TTAGTGGGGTGAT
102068505 TTAGTGGGGTGAT
1 TTAGTGGGGTGAT
*
102068518 TTAGTAGGGTG
1 TTAGTGGGGTG
102068529 TGGGGGTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.38
Consensus pattern (13 bp):
TTAGTGGGGTGAT
Found at i:102068515 original size:30 final size:30
Alignment explanation
Indices: 102068447--102068517 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 30
102068437 GTTAGTGGCA
* * *
102068447 AGTGGGGTAATGGAGTTAGTAGGATGGTTT
1 AGTGGGGTGATAGAGTTAGTAGGATGATTT
* *
102068477 AGTGGGGTGATAGAGTTAGTGGGGTGATTT
1 AGTGGGGTGATAGAGTTAGTAGGATGATTT
102068507 AGTGGGGTGAT
1 AGTGGGGTGAT
102068518 TTAGTAGGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.32
Consensus pattern (30 bp):
AGTGGGGTGATAGAGTTAGTAGGATGATTT
Found at i:102069055 original size:133 final size:134
Alignment explanation
Indices: 102068815--102069123 Score: 426
Period size: 133 Copynumber: 2.3 Consensus size: 134
102068805 GATCTGCTGT
* * * *
102068815 AATTTGATCTGCTTTACTCCTTCTCAGTAAAGATAAGATTTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTAAAGATAAGATCTAGTA-GTTTAGCCTGCTCCACTCC
* * ** *
102068880 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGGTCCATTGTCGATACATGGAGATAAGA-TT
65 TGCTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTGCCGATACATGGAGATAAGACTT
102068944 -CATCAA
130 GC--CAA
* * **
102068950 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTAGTA-TTTAGCCTGCTCCACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTAAAGATAAGATCTAGTAGTTTAGCCTGCTCCACTCCT
* * *
102069014 GCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGTTACATGGAGATAAGACTTG
66 GCTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTGCCGATACATGGAGATAAGACTTG
102069079 CCAA
131 CCAA
102069083 AATTTGATCTGCTTCACTCCTGCTCAGTAAAGATAAGATCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTAAAGATAAGATCT
102069124 GTCGAAATTT
Statistics
Matches: 152, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
133 112 0.74
134 2 0.01
135 38 0.25
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (134 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTAAAGATAAGATCTAGTAGTTTAGCCTGCTCCACTCCT
GCTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTGCCGATACATGGAGATAAGACTTG
CCAA
Found at i:102069270 original size:85 final size:85
Alignment explanation
Indices: 102069163--102069970 Score: 1412
Period size: 85 Copynumber: 9.6 Consensus size: 85
102069153 CAGTGGCATG
* * * *
102069163 AGATCTG-CAATTTTAGCTTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGACCTACTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
102069227 CACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
* *
102069247 AAATCTGTAAACTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
102069312 CACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
102069332 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
* *
102069396 CACCACTACTCGGTGAGCCC
66 CACCACTGCTCGGCGAGCCC
102069416 AGATCTGTAAATTTTAGCCTGTTA-CCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
* * *
102069480 CAGCACCGCTCGGTGAGCCC
66 CACCACTGCTCGGCGAGCCC
*
102069500 AGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
102069565 CACCACTGCTCGGTGAGCCC
66 CACCACTGCTCGGCGAGCCC
102069585 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
102069650 TACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
*
102069670 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGTTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
102069735 CACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
*
102069755 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACTTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
102069820 CACCACTGCTCGGTGAGCCC
66 CACCACTGCTCGGCGAGCCC
102069840 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
102069905 CACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
*
102069925 AGATCTGTAAATTTTAG-C--TTACCCTACTGCTTAAGGGGTTAAGGCG
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
102069971 TGTGGATTCA
Statistics
Matches: 694, Mismatches: 27, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
82 27 0.04
83 11 0.02
84 146 0.21
85 510 0.73
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (85 bp):
AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
CACCACTGCTCGGCGAGCCC
Found at i:102071567 original size:8 final size:7
Alignment explanation
Indices: 102071543--102071589 Score: 67
Period size: 7 Copynumber: 6.4 Consensus size: 7
102071533 ATACCTCGAC
102071543 AGGGTTT
1 AGGGTTT
102071550 AGGGTTT
1 AGGGTTT
102071557 AGGGTTTT
1 AGGG-TTT
102071565 AGGGTTT
1 AGGGTTT
102071572 AGGGTTTT
1 AGGG-TTT
*
102071580 AAGGTTT
1 AGGGTTT
102071587 AGG
1 AGG
102071590 CTTTCGACCC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
7 23 0.64
8 13 0.36
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (7 bp):
AGGGTTT
Found at i:102071567 original size:15 final size:15
Alignment explanation
Indices: 102071543--102071589 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
102071533 ATACCTCGAC
102071543 AGGG-TTTAGGGTTT
1 AGGGTTTTAGGGTTT
102071557 AGGGTTTTAGGGTTT
1 AGGGTTTTAGGGTTT
*
102071572 AGGGTTTTAAGGTTT
1 AGGGTTTTAGGGTTT
102071587 AGG
1 AGG
102071590 CTTTCGACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 4 0.13
15 27 0.87
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (15 bp):
AGGGTTTTAGGGTTT
Found at i:102071589 original size:22 final size:22
Alignment explanation
Indices: 102071543--102071586 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
102071533 ATACCTCGAC
*
102071543 AGGGTTTAGGGTTTAGGGTTTT
1 AGGGTTTAGGGTTTAAGGTTTT
102071565 AGGGTTTAGGGTTTTAAGGTTT
1 AGGGTTTAGGG-TTTAAGGTTT
102071587 AGGCTTTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (22 bp):
AGGGTTTAGGGTTTAAGGTTTT
Found at i:102071952 original size:17 final size:17
Alignment explanation
Indices: 102071932--102071964 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
102071922 ATCTTTTCTT
102071932 CTTTT-TTTATTTTTTTC
1 CTTTTGTTT-TTTTTTTC
102071949 CTTTTGTTTTTTTTTT
1 CTTTTGTTTTTTTTTT
102071965 GAATTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.03, C:0.09, G:0.03, T:0.85
Consensus pattern (17 bp):
CTTTTGTTTTTTTTTTC
Found at i:102074315 original size:19 final size:20
Alignment explanation
Indices: 102074291--102074337 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
102074281 ATTTTTGAAT
* *
102074291 TAATGCACATG-ATGTGATG
1 TAATGCAAATGCATGAGATG
102074310 TAATGCAAATGCATGAGATG
1 TAATGCAAATGCATGAGATG
102074330 -AATGCAAA
1 TAATGCAAA
102074338 AGAAGACGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGCATGAGATG
Found at i:102075887 original size:126 final size:126
Alignment explanation
Indices: 102075661--102075894 Score: 389
Period size: 126 Copynumber: 1.9 Consensus size: 126
102075651 GTTTTAGCCT
* *
102075661 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGTGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
* * *
102075726 CTTCGAATTCTTTAAATACCGACTATTGCCTTTATTTTGAAAATTTTTTAGAGTGAACTGG
66 CTTCGAAGTCTTTAAATACCGACTATTGCCATTATTTTAAAAATTTTTTAGAGTGAACTGG
* *
102075787 TAAGAGGATATCCGAATATTCAAGACAAATAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
102075852 CTTCGAAGTCTTTAAATACCGAAC-ATTGCCATTATTTTAAAAA
66 CTTCGAAGTCTTTAAATACCG-ACTATTGCCATTATTTTAAAAA
102075895 CAATTGAGAA
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
126 98 0.98
127 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.28
Consensus pattern (126 bp):
TAAGAGGATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCGAAGTCTTTAAATACCGACTATTGCCATTATTTTAAAAATTTTTTAGAGTGAACTGG
Found at i:102076434 original size:18 final size:18
Alignment explanation
Indices: 102076411--102076452 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
102076401 ATAATGCTAC
*
102076411 AATAACCA-TAAACATAGT
1 AATAACCATTAAA-ATAAT
*
102076429 AATAACGATTAAAATAAT
1 AATAACCATTAAAATAAT
102076447 AATAAC
1 AATAAC
102076453 AACAACAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.24
Consensus pattern (18 bp):
AATAACCATTAAAATAAT
Found at i:102076477 original size:3 final size:3
Alignment explanation
Indices: 102076471--102076614 Score: 82
Period size: 3 Copynumber: 47.7 Consensus size: 3
102076461 AATAGAAGAC
* * * * ** **
102076471 AAT AAT AAT -AT ATT AAT AAA AAT AAT AAA AAT AAA AAT -AT GTT TCT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
102076517 AAT AAT AAT AAT AAAT CAAT AAT GAT AAT AAAT ATAT ACAA AAT AAT
1 AAT AAT AAT AAT -AAT -AAT AAT AAT AAT -AAT A-AT A-AT AAT AAT
* * *
102076564 AGT AAC AGT AAT AA- AAT AAGT -AT AAT -AT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
102076607 AAT AAT AA
1 AAT AAT AA
102076615 CACTCTCCCC
Statistics
Matches: 107, Mismatches: 25, Indels: 18
0.71 0.17 0.12
Matches are distributed among these distances:
2 9 0.08
3 83 0.78
4 15 0.14
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:102077042 original size:30 final size:30
Alignment explanation
Indices: 102077002--102077068 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
102076992 GTGGCAAATG
* *
102077002 GGGTAATGGAGTTAGTGGGATGGTTTACTA
1 GGGTGATGGAGTTAGTGGGATGATTTACTA
* * *
102077032 GGGTGATGGAGTTAGTGGGGTGATTTAGTG
1 GGGTGATGGAGTTAGTGGGATGATTTACTA
102077062 GGGTGAT
1 GGGTGAT
102077069 TTAGTAGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.01, G:0.46, T:0.33
Consensus pattern (30 bp):
GGGTGATGGAGTTAGTGGGATGATTTACTA
Found at i:102077061 original size:13 final size:13
Alignment explanation
Indices: 102077043--102077079 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
102077033 GGTGATGGAG
102077043 TTAGTGGGGTGAT
1 TTAGTGGGGTGAT
102077056 TTAGTGGGGTGAT
1 TTAGTGGGGTGAT
*
102077069 TTAGTAGGGTG
1 TTAGTGGGGTG
102077080 TGGGGGTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.38
Consensus pattern (13 bp):
TTAGTGGGGTGAT
Found at i:102078335 original size:41 final size:41
Alignment explanation
Indices: 102078274--102078365 Score: 175
Period size: 41 Copynumber: 2.2 Consensus size: 41
102078264 AAAATTTATA
102078274 TTTAATATAATAAAATATTTATTATATTTATGGTAGTGTTT
1 TTTAATATAATAAAATATTTATTATATTTATGGTAGTGTTT
*
102078315 TTTGATATAATAAAATATTTATTATATTTATGGTAGTGTTT
1 TTTAATATAATAAAATATTTATTATATTTATGGTAGTGTTT
102078356 TTTAATATAA
1 TTTAATATAA
102078366 ATATTATTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (41 bp):
TTTAATATAATAAAATATTTATTATATTTATGGTAGTGTTT
Found at i:102080493 original size:3 final size:3
Alignment explanation
Indices: 102080485--102080668 Score: 77
Period size: 3 Copynumber: 59.7 Consensus size: 3
102080475 GACAATAATT
* ** *
102080485 TAA TAA TAA TAA TAA TAA TAA CAA TAA T-A TGT TGA TAA TAAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* * * ** * * * *
102080530 TAA -AA GGAA TAA AAA TAA TAG TAA CGA GAA TAT TAA CAA TAG TAA
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * *
102080575 TAA TAA CGA TAA T-A TAAA TAC TAA TATA TACA TTAA AAA TAA TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A -TAA TAA TAA TAA TAA
* ** * *
102080623 TAG TAA TCG TAA TAA TGA TAA TAA TAA TACA TTAA TGA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TA
102080669 TATGTTAATA
Statistics
Matches: 131, Mismatches: 40, Indels: 20
0.69 0.21 0.10
Matches are distributed among these distances:
2 6 0.05
3 107 0.82
4 14 0.11
5 4 0.03
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:102080764 original size:3 final size:3
Alignment explanation
Indices: 102080758--102080863 Score: 56
Period size: 3 Copynumber: 34.7 Consensus size: 3
102080748 GTAGTAGTAG
* * * *
102080758 TAA TAA TAA TAA TAA TAA TAA TACA TTAA GTTA CAA TAG TAA -AG TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A -TAA -TAA TAA TAA TAA TAA TAA
* * * * * *
102080805 TAA CAG TGA TAA TGA TAA T-A TAT TAGA TAA TAA TAG TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
102080849 TAA GTAA TAA TAA TA
1 TAA -TAA TAA TAA TA
102080864 GATTAAATTG
Statistics
Matches: 75, Mismatches: 21, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
2 5 0.07
3 59 0.79
4 9 0.12
5 2 0.03
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:102080817 original size:44 final size:42
Alignment explanation
Indices: 102080759--102080863 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 42
102080749 TAGTAGTAGT
*
102080759 AATAATAA-TAATAATAATAATACATTA-AGTTACAATAGTAA
1 AATAATAAGTAATAATAATAATACATTAGA-TAACAATAGTAA
* * * * *
102080800 AGTAATAACAGTGATAATGATAATATATTAGATAATAATAGTAA
1 AATAAT-A-AGTAATAATAATAATACATTAGATAACAATAGTAA
102080844 AATAATAAGTAATAATAATA
1 AATAATAAGTAATAATAATA
102080864 GATTAAATTG
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
41 5 0.10
42 12 0.24
43 2 0.04
44 31 0.61
45 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (42 bp):
AATAATAAGTAATAATAATAATACATTAGATAACAATAGTAA
Found at i:102082106 original size:18 final size:20
Alignment explanation
Indices: 102082071--102082113 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
102082061 AAAAATCATT
102082071 AAAAATTGTAAAAGTTAA-A
1 AAAAATTGTAAAAGTTAACA
102082090 AAAAATATG-AAAA-TTAACA
1 AAAAAT-TGTAAAAGTTAACA
102082109 AAAAA
1 AAAAA
102082114 AATTATTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 2 0.09
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (20 bp):
AAAAATTGTAAAAGTTAACA
Found at i:102082159 original size:19 final size:19
Alignment explanation
Indices: 102082112--102082164 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
102082102 ATTAACAAAA
*
102082112 AAAATTATTTAGAAAATTTT
1 AAAATTATTTA-AAAATTAT
102082132 AAAATTTATTTAAAAA-TAT
1 AAAA-TTATTTAAAAATTAT
102082151 AAGAATTATTTAAA
1 AA-AATTATTTAAA
102082165 GACACTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 13 0.43
20 10 0.33
21 7 0.23
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (19 bp):
AAAATTATTTAAAAATTAT
Found at i:102083824 original size:47 final size:48
Alignment explanation
Indices: 102083721--102083843 Score: 158
Period size: 47 Copynumber: 2.6 Consensus size: 48
102083711 TTTTACTAAA
* * **
102083721 ATGCCATAACCCAGCTATGGTCTTACATCTTATACACATATCACACCG
1 ATGCCATATCCCAGATATGGTCTTACATCAAATACACATATCACACCG
* * *
102083769 ATGCCATATCCCAGATATGGTCTTACA-CAAATGCACTTATCACTCCG
1 ATGCCATATCCCAGATATGGTCTTACATCAAATACACATATCACACCG
* *
102083816 ATGCCATATCCCAGATATGATTTTACAT
1 ATGCCATATCCCAGATATGGTCTTACAT
102083844 GGAAATCACT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
47 40 0.62
48 25 0.38
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.29
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTACATCAAATACACATATCACACCG
Found at i:102083897 original size:31 final size:31
Alignment explanation
Indices: 102083862--102084014 Score: 245
Period size: 31 Copynumber: 5.0 Consensus size: 31
102083852 CTTGTCACTT
*
102083862 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
102083893 GTAGCCGAAGCTACCATTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
102083924 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
102083955 GTAGCCAAAGCTACCAC-TTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
102083985 GTAGCCAAAGCTACCACTTTTCACTTATCA
1 GTAGCCGAAGCTACCACTTTTCACTGATCA
102084015 TTTGTCCTTG
Statistics
Matches: 114, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
30 30 0.26
31 84 0.74
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:102084088 original size:57 final size:50
Alignment explanation
Indices: 102084054--102084215 Score: 233
Period size: 50 Copynumber: 3.3 Consensus size: 50
102084044 AGCTATCACT
* *
102084054 TATCACTT-TCACTTGTCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTT-TCACTTGTTCTTGATCAGATAAGTGTAGCCGAAGC
* *
102084104 TATCACTTATCACTTTCACTTGTTC---ATCAGTTAAGTGTAGCCGGAGC
1 TATCACTTATCACTTTCACTTGTTCTTGATCAGATAAGTGTAGCCGAAGC
* *
102084151 TATCACTTATCACTTTCACTTGTTCTTGATCAGATAAATGTAGCTGAAGC
1 TATCACTTATCACTTTCACTTGTTCTTGATCAGATAAGTGTAGCCGAAGC
102084201 TATCACTTATCACTT
1 TATCACTTATCACTT
102084216 GTTGCCATGG
Statistics
Matches: 100, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
47 45 0.45
50 49 0.49
51 6 0.06
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (50 bp):
TATCACTTATCACTTTCACTTGTTCTTGATCAGATAAGTGTAGCCGAAGC
Found at i:102084211 original size:97 final size:100
Alignment explanation
Indices: 102084025--102084215 Score: 289
Period size: 104 Copynumber: 1.9 Consensus size: 100
102084015 TTTGTCCTTG
102084025 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTTGTCCTTGATCAGATA
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTG----TTGTCCTTGATCAGATA
*
102084090 AGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTTC
62 AATGTAGCCGAAGCTATCACTTATCACTTTCACTTGTTC
* *
102084129 ATCAGTTAAGTGTAGCCGGAGCTATCACTTATCACTTTCACTTG-T-T-CTTGATCAGATAAATG
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTTGTCCTTGATCAGATAAATG
*
102084191 TAGCTGAAGCTATCACTTATCACTT
66 TAGCCGAAGCTATCACTTATCACTT
102084216 GTTGCCATGG
Statistics
Matches: 83, Mismatches: 4, Indels: 7
0.88 0.04 0.07
Matches are distributed among these distances:
97 39 0.47
98 1 0.01
99 1 0.01
104 42 0.51
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (100 bp):
ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTTGTCCTTGATCAGATAAATG
TAGCCGAAGCTATCACTTATCACTTTCACTTGTTC
Found at i:102087867 original size:3 final size:3
Alignment explanation
Indices: 102087848--102087897 Score: 73
Period size: 3 Copynumber: 16.0 Consensus size: 3
102087838 GTATATGCAT
*
102087848 ATA ATA AAA ATA TATA ATA ATA TATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
102087895 ATA
1 ATA
102087898 TGAAAATACA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 37 0.86
4 6 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:102089104 original size:17 final size:17
Alignment explanation
Indices: 102089082--102089115 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
102089072 GACGGGTTAT
102089082 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
102089099 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
102089116 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:102090023 original size:127 final size:127
Alignment explanation
Indices: 102089836--102090736 Score: 1641
Period size: 127 Copynumber: 7.1 Consensus size: 127
102089826 TCAACTCATT
102089836 TCTCGCAATATGAGTTGAATT-TTGA-AAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
1 TCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
102089899 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
65 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
*
102089962 TCTCGCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
102090027 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
* *
102090089 TCTCGCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGACTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
102090154 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
102090216 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
*
102090281 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA-CAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
* *
102090342 TCTCGCAATATGAGTTGATTCTTGACAGACATAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
*
102090407 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATTAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
102090469 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
102090534 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
102090596 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
* ** * *
102090661 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA-CAAAAATGAAAAGGCTT-AACTCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGG-TTCAACCCACC
102090722 TCTCGCAATATGAGT
1 TCTCGCAATATGAGT
102090737 CAATTTAAAA
Statistics
Matches: 755, Mismatches: 16, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
125 3 0.00
126 176 0.23
127 576 0.76
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (127 bp):
TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
Found at i:102090537 original size:380 final size:380
Alignment explanation
Indices: 102089836--102090736 Score: 1673
Period size: 380 Copynumber: 2.4 Consensus size: 380
102089826 TCAACTCATT
102089836 TCTCGCAATATGAGTTGAATT-TTGA-AAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
1 TCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
*
102089899 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTC
65 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA-CAGGAATTAAAAGGTTCAACCCACCTC
102089964 TCGCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAA
129 TCGCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAA
102090029 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTCG
194 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTCG
*
102090094 CAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGACTCAACTC
259 CAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGACTCAACTC
102090159 ACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
324 ACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
102090216 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
102090281 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAGGAATTAAAAGGTTCAACCCACCTCTC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAGGAATTAAAAGGTTCAACCCACCTCTC
*
102090346 GCAATATGAGTTGATTCTTGACAGACATAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACT
131 GCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACT
*
102090411 CACCTCTAGCAATATGAGTTGATTTTGAAAAATTAGGAATTAAAAGGTTCAACCCACCTCTCGCA
196 CACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTCGCA
*
102090476 ATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACTCAC
261 ATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGACTCAACTCAC
102090541 CTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
326 CTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
102090596 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
** * *
102090661 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATGAAAAGGCTT-AACTCACCTCT
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAGGAATTAAAAGG-TTCAACCCACCTCT
102090725 CGCAATATGAGT
130 CGCAATATGAGT
102090737 CAATTTAAAA
Statistics
Matches: 509, Mismatches: 9, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
379 3 0.01
380 429 0.84
381 77 0.15
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (380 bp):
TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAGGAATTAAAAGGTTCAACCCACCTCTC
GCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACT
CACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTCGCA
ATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGACTCAACTCAC
CTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
Found at i:102101411 original size:13 final size:13
Alignment explanation
Indices: 102101393--102101439 Score: 78
Period size: 13 Copynumber: 3.7 Consensus size: 13
102101383 ATGTATATGC
102101393 ATATAATAAAAAT
1 ATATAATAAAAAT
102101406 ATATAATAAAAAT
1 ATATAATAAAAAT
*
102101419 ATATAATAATAAT
1 ATATAATAAAAAT
102101432 A-ATAATAA
1 ATATAATAA
102101440 TATGAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 7 0.21
13 26 0.79
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
ATATAATAAAAAT
Found at i:102101414 original size:3 final size:3
Alignment explanation
Indices: 102101395--102101441 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
102101385 GTATATGCAT
* *
102101395 ATA ATA AAA ATA TATA ATA AAA ATA TATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
102101442 TGAAAATACA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 32 0.84
4 6 0.16
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:102101916 original size:24 final size:23
Alignment explanation
Indices: 102101887--102101938 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
102101877 TTTGTACCGT
*
102101887 GGAGAGAAAAAAAAGGAGAGAAGG
1 GGAGAGAAAAAAAAGAAGAG-AGG
** *
102101911 GGAGAGGGAAGAAAGAAGAGAGG
1 GGAGAGAAAAAAAAGAAGAGAGG
102101934 GGAGA
1 GGAGA
102101939 AGAGGGAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 8 0.33
24 16 0.67
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (23 bp):
GGAGAGAAAAAAAAGAAGAGAGG
Found at i:102103235 original size:29 final size:30
Alignment explanation
Indices: 102103196--102103338 Score: 74
Period size: 35 Copynumber: 4.4 Consensus size: 30
102103186 TGCGGAATAA
102103196 ATACATATATTTAATTTCATATTGAATTAAT
1 ATACAT-TATTTAATTTCATATTGAATTAAT
* * *
102103227 ATA-ATTATTTATTTATTCAATATATCAATGTAAA
1 ATACATTATTTA-AT-TTC-ATAT-TGAAT-TAAT
** * * *
102103261 ATTATTTTGATTTAACTTGCATATTTAAATGAAT
1 A-TACATT-ATTTAA-TTTCATA-TTGAATTAAT
*
102103295 AAATACATATATTTAATTTTATATTGAATTAAT
1 --ATACAT-TATTTAATTTCATATTGAATTAAT
102103328 ATA-ATTATTTA
1 ATACATTATTTA
102103339 TTTATTCAAT
Statistics
Matches: 84, Mismatches: 15, Indels: 28
0.66 0.12 0.22
Matches are distributed among these distances:
29 12 0.14
30 5 0.06
31 9 0.11
32 4 0.05
33 12 0.14
34 11 0.13
35 18 0.21
36 7 0.08
37 6 0.07
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (30 bp):
ATACATTATTTAATTTCATATTGAATTAAT
Found at i:102104867 original size:14 final size:14
Alignment explanation
Indices: 102104836--102104879 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
102104826 TAATAGGGTG
102104836 TATTATAATTTAAA
1 TATTATAATTTAAA
* **
102104850 TATTTTAATTTATC
1 TATTATAATTTAAA
102104864 TATTATAATTTTAAA
1 TATTATAA-TTTAAA
102104879 T
1 T
102104880 TATCTTTATA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (14 bp):
TATTATAATTTAAA
Found at i:102104895 original size:19 final size:19
Alignment explanation
Indices: 102104849--102104897 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
102104839 TATAATTTAA
*
102104849 ATATTTTAATTTATCTATT
1 ATATTTTAAATTATCTATT
102104868 ATAATTTTAAATTATCT-TT
1 AT-ATTTTAAATTATCTATT
102104887 ATATCTTTAAA
1 ATAT-TTTAAA
102104898 AAAAAAGCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 2 0.07
19 12 0.44
20 13 0.48
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTTTAAATTATCTATT
Found at i:102108381 original size:20 final size:20
Alignment explanation
Indices: 102108358--102108397 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
102108348 CTGTAAGATT
102108358 TTATAAAAAT-CATAAAAAAA
1 TTAT-AAAATGCATAAAAAAA
102108378 TTATAAAATGCATAAAAAAA
1 TTATAAAATGCATAAAAAAA
102108398 GGCCCTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.25
Consensus pattern (20 bp):
TTATAAAATGCATAAAAAAA
Found at i:102112320 original size:14 final size:16
Alignment explanation
Indices: 102112289--102112323 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
102112279 TGAATTGATG
102112289 TTATTTTTACTATTTT
1 TTATTTTTACTATTTT
102112305 TTATTTTTA-T-TTTT
1 TTATTTTTACTATTTT
102112319 TTATT
1 TTATT
102112324 ATTCTAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 1 0.05
16 9 0.47
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (16 bp):
TTATTTTTACTATTTT
Found at i:102119776 original size:18 final size:18
Alignment explanation
Indices: 102119753--102119804 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
102119743 TAAGTAAACC
*
102119753 ATTAATACAAATGATACA
1 ATTAATATAAATGATACA
*
102119771 ATTAATATAAA-CATTACA
1 ATTAATATAAATGA-TACA
*
102119789 AATAATATAAATGATA
1 ATTAATATAAATGATA
102119805 TGATAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.04
18 26 0.93
19 1 0.04
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.31
Consensus pattern (18 bp):
ATTAATATAAATGATACA
Found at i:102121651 original size:176 final size:176
Alignment explanation
Indices: 102121359--102122323 Score: 1449
Period size: 176 Copynumber: 5.5 Consensus size: 176
102121349 TGACTGGTTT
* * * ** * *
102121359 AAATCTGCTCCATTGCCTATACATAGAGCTAAGATTTGCCCTCTTCGATCTG-----CTGCAACT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACT
* * ** * * *
102121419 TCAGGGAAATAAGATCTTCAATCTTCAGTCTGCTCCCTTGTTACCTCAGGAAGATAAGACTCATT
66 TCAGGGAGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTACCTCAGAAAGATAAGACTTATT
* * * *
102121484 CTTCAACCTGTTCTCTTGCTACCTTAGAAAGATAAGGCTGGTGGTA
131 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGGTA
102121530 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACT
* *
102121595 TCAGGGAGATAAGATCTTCAATCTTCAATC-GTTTTTCTTGCTACCTCAGAAAGATAAGACTCAT
66 TCAGGGAGATAAGATCTTCAATCTTCAGTCTG-TTTTCTTGCTACCTCAGAAAGATAAGACTTAT
102121659 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGG-TGGGTGGTA
130 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCT-GGTGGTA
* * *
102121706 AAATCTACTCCATTGTCGATACATGGAGATGAGATTCACCATTTTCGATCTGCTCCACTGCAACT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACT
* *
102121771 TCAGGGAGATAAGATCTTCAATCTTCAGTTTGCTTTCTTGCTACCTCAGAAAGATAAGACTTATT
66 TCAGGGAGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTACCTCAGAAAGATAAGACTTATT
*
102121836 CTTCAACCTGCTCTCTTGCTACTTCAGAGAGATGAGGCTGGTGGTA
131 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGGTA
* * * * *
102121882 AAATCTACTCCATTGCTGATACATGAAGATAAGATTCACCATTTTTGATCTGCTTCACTGCAACT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACT
* *
102121947 TCAGGGAGATATGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTTATT
66 TCAGGGAGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTACCTCAGAAAGATAAGACTTATT
*
102122012 CTTCAACCTGCTCTCTTGCTACCTCAAAGAGATGAGGCTGGTGGTA
131 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGGTA
* ** *
102122058 AAATCTGCTCCATTGCGGATACATGGAGATAAGATTCACCATTTTTTATCTGCTCCATTGCAACT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACT
102122123 TCAGGGAGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTACCTCAGAAAGATAAGACTTATT
66 TCAGGGAGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTACCTCAGAAAGATAAGACTTATT
* *
102122188 CTTCAACCTGCTTTCTTGCTACCTCAGAGAGATGAGGCTAGTGGTA
131 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGGTA
* * * * *
102122234 AAATTTGCTCCATTGTCGATACATGGGGATAAGATTCACCATTTTCGATCTACTCCACTACAACT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACT
*
102122299 TCAGGGAGATAAAATCTTCAATCTT
66 TCAGGGAGATAAGATCTTCAATCTT
102122324 TACTAATGTC
Statistics
Matches: 728, Mismatches: 57, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
171 45 0.06
175 2 0.00
176 679 0.93
177 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (176 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACT
TCAGGGAGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTACCTCAGAAAGATAAGACTTATT
CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGGTA
Found at i:102122203 original size:43 final size:45
Alignment explanation
Indices: 102122129--102122220 Score: 125
Period size: 43 Copynumber: 2.1 Consensus size: 45
102122119 AACTTCAGGG
** *
102122129 AGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTTTCTTGCTACCTCAGAA
* *
102122174 AGATAAGA-CTT-ATTCTTCAACCTGCTTTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTTTCTTGCTACCTCAGAA
102122217 AGAT
1 AGAT
102122221 GAGGCTAGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 31 0.74
44 3 0.07
45 8 0.19
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTTTCTTGCTACCTCAGAA
Found at i:102122365 original size:16 final size:16
Alignment explanation
Indices: 102122340--102122378 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
102122330 TGTCGCTACA
*
102122340 CTGTCTTCTGGGGAAC
1 CTGTCCTCTGGGGAAC
*
102122356 CTGTCCTCTGGGGATC
1 CTGTCCTCTGGGGAAC
102122372 CTGTCCT
1 CTGTCCT
102122379 GTAGACTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.31, G:0.28, T:0.33
Consensus pattern (16 bp):
CTGTCCTCTGGGGAAC
Found at i:102128357 original size:43 final size:43
Alignment explanation
Indices: 102128296--102128383 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
102128286 CATCATTGAA
102128296 AAAGATGAAGTTGTCTGCACTTATGTTATCAACCAATCGATCC
1 AAAGATGAAGTTGTCTGCACTTATGTTATCAACCAATCGATCC
* *
102128339 AAAGATGAAGTTGTCTGCACTTATGTTGTCAGCCAATCGATCC
1 AAAGATGAAGTTGTCTGCACTTATGTTATCAACCAATCGATCC
102128382 AA
1 AA
102128384 CTTATTAACG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (43 bp):
AAAGATGAAGTTGTCTGCACTTATGTTATCAACCAATCGATCC
Found at i:102130861 original size:19 final size:19
Alignment explanation
Indices: 102130837--102130876 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
102130827 TATGATCTTT
*
102130837 AATGCATATG-ATGTAATGC
1 AATGCAAATGCATG-AATGC
102130856 AATGCAAATGCATGAATGC
1 AATGCAAATGCATGAATGC
102130875 AA
1 AA
102130877 AGGAGGCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (19 bp):
AATGCAAATGCATGAATGC
Found at i:102133497 original size:22 final size:22
Alignment explanation
Indices: 102133469--102133512 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
102133459 ACAGGTATAG
102133469 CCACAGCGGTCATGCAATGTAA
1 CCACAGCGGTCATGCAATGTAA
102133491 CCACAGCGGTCATGCAATGTAA
1 CCACAGCGGTCATGCAATGTAA
102133513 TATAGTACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.18
Consensus pattern (22 bp):
CCACAGCGGTCATGCAATGTAA
Found at i:102134881 original size:41 final size:42
Alignment explanation
Indices: 102134825--102134956 Score: 139
Period size: 41 Copynumber: 3.2 Consensus size: 42
102134815 CGTTTGCAAT
* *
102134825 AAAACGCCGCAAAAAACTGAGCAATAGCGGCGCTTTTGA-TC
1 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGCTTTTGAGTA
* * * *
102134866 CAAACGCCGCTAAAAA-TAGAGTAATAGTGGCG-TTTTTAGTA
1 AAAACGCCGCTAAAAACT-GAGCAATAGCGGCGCTTTTGAGTA
* * *
102134907 AAAACGCAGCTAAAATCTGAACAATAGCGGCGCTTTTGA--A
1 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGCTTTTGAGTA
102134947 AAAACGCCGC
1 AAAACGCCGC
102134957 CATAGGTCGA
Statistics
Matches: 73, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
40 16 0.22
41 51 0.70
42 6 0.08
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (42 bp):
AAAACGCCGCTAAAAACTGAGCAATAGCGGCGCTTTTGAGTA
Found at i:102134950 original size:40 final size:40
Alignment explanation
Indices: 102134809--102134956 Score: 131
Period size: 41 Copynumber: 3.6 Consensus size: 40
102134799 TATTATACAT
* *
102134809 TAGCGGCG--TTTGCAATAAAACGCCGCAAAAAACTGAGCAA
1 TAGCGGCGCTTTTG-AA-AAAACGCCGCTAAAATCTGAGCAA
** * *
102134849 TAGCGGCGCTTTTGATCCAAACGCCGCTAAAAAT-AGAGTAA
1 TAGCGGCGCTTTTGA-AAAAACGCCGCT-AAAATCTGAGCAA
* * * * *
102134890 TAGTGGCGTTTTTAGTAAAAACGCAGCTAAAATCTGAACAA
1 TAGCGGCGCTTTT-GAAAAAACGCCGCTAAAATCTGAGCAA
102134931 TAGCGGCGCTTTTGAAAAAACGCCGC
1 TAGCGGCGCTTTTGAAAAAACGCCGC
102134957 CATAGGTCGA
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
40 24 0.29
41 50 0.60
42 9 0.11
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (40 bp):
TAGCGGCGCTTTTGAAAAAACGCCGCTAAAATCTGAGCAA
Found at i:102134982 original size:41 final size:40
Alignment explanation
Indices: 102134931--102135155 Score: 208
Period size: 41 Copynumber: 5.6 Consensus size: 40
102134921 ATCTGAACAA
* * *
102134931 TAGCGGCGCTTTTGAAAAAACGCCGCCATAGGTCGAGCTTT
1 TAGCGGCGCTTTTG-AAAAACGCCGCTATAGATCGAGGTTT
* * * **
102134972 TAGCGACGCTTTTTGAAAAACGCCGCTATTGCTC-AATTTT
1 TAGCGGCGC-TTTTGAAAAACGCCGCTATAGATCGAGGTTT
* * *
102135012 TAGCAGCGCTTTTGGAAAAATGCCACTATAGATCGAGGTTT
1 TAGCGGCGCTTTT-GAAAAACGCCGCTATAGATCGAGGTTT
*
102135053 TAGCGGCGCTTTT----AATGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGAAAAACGCCGCTATAGATCGAGGTTT
** * *
102135089 TATAGGCGCTTTTGAAAAAATGCCGCTATAGATCTAGGTTT
1 TAGCGGCGCTTTTG-AAAAACGCCGCTATAGATCGAGGTTT
* *
102135130 TAGTGGCGCTTTTGGGAAAACGCCGC
1 TAGCGGCGCTTTT-GAAAAACGCCGC
102135156 AAAAAATTAA
Statistics
Matches: 152, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
36 33 0.22
39 4 0.03
40 27 0.18
41 82 0.54
42 6 0.04
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (40 bp):
TAGCGGCGCTTTTGAAAAACGCCGCTATAGATCGAGGTTT
Found at i:102135077 original size:36 final size:37
Alignment explanation
Indices: 102135029--102135142 Score: 140
Period size: 36 Copynumber: 3.0 Consensus size: 37
102135019 GCTTTTGGAA
* *
102135029 AAATGCCACTATAGATCGAGGTTTTAGCGGCGCTTTT
1 AAATGCCGCTATAGATCGAGGTTTTAGAGGCGCTTTT
*
102135066 -AATGCCGCTATAGATCGAGGTTTTATAGGCGCTTTT
1 AAATGCCGCTATAGATCGAGGTTTTAGAGGCGCTTTT
* *
102135102 GAAAAAATGCCGCTATAGATCTAGGTTTTAGTGGCGCTTTT
1 ----AAATGCCGCTATAGATCGAGGTTTTAGAGGCGCTTTT
102135143 GGGAAAACGC
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
36 33 0.50
41 33 0.50
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (37 bp):
AAATGCCGCTATAGATCGAGGTTTTAGAGGCGCTTTT
Found at i:102135573 original size:21 final size:21
Alignment explanation
Indices: 102135527--102135578 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
102135517 TTAATTATCA
* *
102135527 TTATAGTTTAGGGTTTATGGT
1 TTATGGTTAAGGGTTTATGGT
*
102135548 ATATGGTTAAGGGTTTAAT-GT
1 TTATGGTTAAGGGTTT-ATGGT
102135569 TTATGAGTTA
1 TTATG-GTTA
102135579 CTATTTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGGT
Found at i:102135616 original size:22 final size:22
Alignment explanation
Indices: 102135591--102135633 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
102135581 ATTTTAAGCT
*
102135591 TTATAGATTATGGGTTTAGGGA
1 TTATAGATTATGGGTTAAGGGA
* *
102135613 TTATGGTTTATGGGTTAAGGG
1 TTATAGATTATGGGTTAAGGG
102135634 TTAGGGTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (22 bp):
TTATAGATTATGGGTTAAGGGA
Found at i:102135710 original size:29 final size:28
Alignment explanation
Indices: 102135603--102135719 Score: 66
Period size: 28 Copynumber: 4.3 Consensus size: 28
102135593 ATAGATTATG
* * * *
102135603 GGTTTAGGGATTATGGTTTATGGGTTAA
1 GGTTAAGGGTTTAAGGTTTATGAGTTAA
* *
102135631 GGGTT-AGGGTTTAAGTTTTA-GAG---G
1 -GGTTAAGGGTTTAAGGTTTATGAGTTAA
* *
102135655 GGTT-GGGGTTTAAGGTTTATGGGTTAAA
1 GGTTAAGGGTTTAAGGTTTATGAGTT-AA
* * *
102135683 GGTTAAGGGTTTATGTTTTATGATTTAA
1 GGTTAAGGGTTTAAGGTTTATGAGTTAA
*
102135711 GGTTTAGGG
1 GGTTAAGGG
102135720 GTCAGAGGTT
Statistics
Matches: 67, Mismatches: 15, Indels: 13
0.71 0.16 0.14
Matches are distributed among these distances:
23 17 0.25
24 2 0.03
27 2 0.03
28 26 0.39
29 20 0.30
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (28 bp):
GGTTAAGGGTTTAAGGTTTATGAGTTAA
Found at i:102137895 original size:23 final size:24
Alignment explanation
Indices: 102137869--102137916 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
102137859 AGAGAACATC
102137869 TGTTAAATCAGATTAGGTGG-ATT
1 TGTTAAATCAGATTAGGTGGCATT
*
102137892 TGTTAAATCGGATTAGGTGGCATT
1 TGTTAAATCAGATTAGGTGGCATT
102137916 T
1 T
102137917 AAAAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.40
Consensus pattern (24 bp):
TGTTAAATCAGATTAGGTGGCATT
Found at i:102141013 original size:22 final size:23
Alignment explanation
Indices: 102140971--102141013 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
102140961 TTTCAAAAAT
*
102140971 TAAACATAATATAATATTTAACA
1 TAAAAATAATATAATATTTAACA
*
102140994 TAAAAATAA-ATATTATTTAA
1 TAAAAATAATATAATATTTAA
102141014 TTAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAAAATAATATAATATTTAACA
Found at i:102141826 original size:36 final size:35
Alignment explanation
Indices: 102141762--102141839 Score: 84
Period size: 36 Copynumber: 2.2 Consensus size: 35
102141752 TAAGTAAACC
* * *
102141762 AATAATACAAATGATACAATTAATATAAACATTACA
1 AATAATACAAATGATACAATAAAAATAAA-ATTAAA
* ** *
102141798 AATAATATAAATGATATGATAAAAATAAATTTAAA
1 AATAATACAAATGATACAATAAAAATAAAATTAAA
102141833 AATAATA
1 AATAATA
102141840 ATTAATAAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
35 11 0.31
36 24 0.69
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (35 bp):
AATAATACAAATGATACAATAAAAATAAAATTAAA
Found at i:102143043 original size:29 final size:30
Alignment explanation
Indices: 102143001--102143068 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
102142991 GGGCCCAAGA
* *
102143001 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TCAAAATTTGAAGGACTAATAGT
*
102143031 GTAAATATGAAAATTTGAAGGACTAATAGT
1 GTAAATATCAAAATTTGAAGGACTAATAGT
*
102143061 GCAAATAT
1 GTAAATAT
102143069 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29
Consensus pattern (30 bp):
GTAAATATCAAAATTTGAAGGACTAATAGT
Found at i:102149440 original size:26 final size:26
Alignment explanation
Indices: 102149411--102149466 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
102149401 TAATAAAAAT
102149411 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102149437 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102149463 TGAT
1 TGAT
102149467 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:102151103 original size:27 final size:27
Alignment explanation
Indices: 102151063--102151203 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 27
102151053 AGGAAGCGTC
*
102151063 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
102151090 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
102151116 CCTGGTGGCTATGCCACAATTATCTAAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
102151144 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
102151171 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
102151198 CTGGTG
1 CTGGTG
102151204 ACTTCGTCAC
Statistics
Matches: 101, Mismatches: 4, Indels: 18
0.82 0.03 0.15
Matches are distributed among these distances:
26 11 0.11
27 85 0.84
28 5 0.05
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:102151146 original size:54 final size:54
Alignment explanation
Indices: 102151060--102151203 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
102151050 TGGAGGAAGC
*
102151060 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
102151114 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
* * * *
102151168 ATTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCT-AATCTGGTG
102151204 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
Found at i:102151215 original size:81 final size:80
Alignment explanation
Indices: 102151063--102151220 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
102151053 AGGAAGCGTC
*
102151063 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
102151128 GCCACAATTATCTAAT
66 GCCACAA-TATCTAAT
* *
102151144 CTGGTGGCTCTGCCAC-ATATATCT-ATTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGA-TCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGAC
*
102151206 T-TCGTCACAATATCT
63 TAT-GCCACAATATCT
102151221 GGCAGCCTCG
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
80 17 0.25
81 52 0.75
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTAAT
Found at i:102152290 original size:3 final size:3
Alignment explanation
Indices: 102152171--102152270 Score: 71
Period size: 3 Copynumber: 33.3 Consensus size: 3
102152161 GTTATTAACA
* * * * *
102152171 TAT TAT TAT TCT TAAT GTAT TAT CAT TAC TAT TAT TTT TAT TTT TAT
1 TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
102152218 T-T T-T TAC TAT CAT CAT T-T TTT TAAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
102152261 TAT TAT TAT T
1 TAT TAT TAT T
102152271 TGTTGTTTAA
Statistics
Matches: 77, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
2 6 0.08
3 65 0.84
4 5 0.06
5 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:102152501 original size:19 final size:18
Alignment explanation
Indices: 102152464--102152514 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
102152454 TACCATTGTT
*
102152464 ACTGTTATTATTA-TTATC
1 ACTGTTATTA-TACTCATC
102152482 ACTTGTTATTATACTCATC
1 AC-TGTTATTATACTCATC
*
102152501 ACTATTATTATACT
1 ACTGTTATTATACT
102152515 TTATTATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 15 0.52
19 14 0.48
ACGTcount: A:0.29, C:0.16, G:0.04, T:0.51
Consensus pattern (18 bp):
ACTGTTATTATACTCATC
Found at i:102152509 original size:3 final size:3
Alignment explanation
Indices: 102152503--102152577 Score: 50
Period size: 3 Copynumber: 26.0 Consensus size: 3
102152493 TACTCATCAC
* * *
102152503 TAT TAT TA- TAC T-T TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * *
102152546 TAT TAT T-G TAT TCT TAC TAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102152578 ATTTCCTTTT
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
2 6 0.11
3 45 0.83
4 3 0.06
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:102152521 original size:13 final size:13
Alignment explanation
Indices: 102152503--102152551 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
102152493 TACTCATCAC
102152503 TATTATTATACTT
1 TATTATTATACTT
*
102152516 TATTATTGTTAC-T
1 TATTATT-ATACTT
*
102152529 TATTATTTTACTAT
1 TATTATTATACT-T
102152543 TATTATTAT
1 TATTATTAT
102152552 TGTATTCTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 4 0.13
13 15 0.48
14 12 0.39
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (13 bp):
TATTATTATACTT
Found at i:102152565 original size:23 final size:22
Alignment explanation
Indices: 102152503--102152581 Score: 81
Period size: 23 Copynumber: 3.6 Consensus size: 22
102152493 TACTCATCAC
* * *
102152503 TATTATTATACTTTATTATTGT
1 TATTATTATATTTTACTATTAT
102152525 TACTTA-T-TATTTTACTATTAT
1 TA-TTATTATATTTTACTATTAT
*
102152546 TATTATTGTATTCTTACTATTAT
1 TATTATTATATT-TTACTATTAT
*
102152569 TGTTATTATATTT
1 TATTATTATATTT
102152582 CCTTTTTTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
20 3 0.06
21 14 0.29
22 8 0.17
23 23 0.48
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (22 bp):
TATTATTATATTTTACTATTAT
Found at i:102152933 original size:3 final size:3
Alignment explanation
Indices: 102152738--102152913 Score: 62
Period size: 3 Copynumber: 58.0 Consensus size: 3
102152728 TAAATTTTAG
* * **
102152738 ATT ACTT ATT ATT -TGT ATT ATT GTT ATT ACT ATT -TGT ATTT ACC ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT
* * * *
102152785 ATT ATT ACT ATT ATT -TT CACTT -TT ATT ACT ATT ACT ATT ATC ATT
1 ATT ATT ATT ATT ATT ATT -A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
102152830 -TCT -TT ATT ATT TTCT ATT ACT ATT ATT ATT ATT AAT ATA AAT ATT
1 AT-T ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
102152875 GA-T ATT CTT ATT ACT ACTT -TT ATT ATT ATT AAT ATT ATT
1 -ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
102152914 GTTTTACCAC
Statistics
Matches: 124, Mismatches: 32, Indels: 34
0.65 0.17 0.18
Matches are distributed among these distances:
2 11 0.09
3 100 0.81
4 10 0.08
5 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:102155251 original size:38 final size:38
Alignment explanation
Indices: 102155161--102155291 Score: 129
Period size: 38 Copynumber: 3.4 Consensus size: 38
102155151 CCTCGAGTCA
* * * *
102155161 ATGAGACACTGGGTGTCATACTGTTACTTCGGATAGATTCG
1 ATGAGACACTGGGTATCA-ACT-TTACTTTGGCTAGA-CCG
** *
102155202 ATGAGGTACTGGGTACCAACTTTACTTTGGCTAGACCG
1 ATGAGACACTGGGTATCAACTTTACTTTGGCTAGACCG
* * *
102155240 ATGAGACACTGGGTATCAACTTTGCTTTGAACTA-TCCG
1 ATGAGACACTGGGTATCAACTTTACTTTG-GCTAGACCG
102155278 ATGAGACACTGGGT
1 ATGAGACACTGGGT
102155292 GCCATTCTGG
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
38 44 0.58
39 15 0.20
40 3 0.04
41 14 0.18
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (38 bp):
ATGAGACACTGGGTATCAACTTTACTTTGGCTAGACCG
Found at i:102155896 original size:24 final size:24
Alignment explanation
Indices: 102155869--102155915 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
102155859 AGATATAGAA
* *
102155869 ATGAAATTTATGAAATGGTTATTG
1 ATGAAATGTATGAAATGGATATTG
102155893 ATGAAATGTATGAAATGGATATT
1 ATGAAATGTATGAAATGGATATT
102155916 AATGTAGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (24 bp):
ATGAAATGTATGAAATGGATATTG
Found at i:102161407 original size:40 final size:40
Alignment explanation
Indices: 102161352--102161433 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
102161342 AAGTAATTTC
102161352 AGATGTCCTCTTAGTATCTGAGATAGATTAGAATCTCCTT
1 AGATGTCCTCTTAGTATCTGAGATAGATTAGAATCTCCTT
102161392 AGATGTCCTCTTAGTATCTGAGATAGATTAGAATCTCCTT
1 AGATGTCCTCTTAGTATCTGAGATAGATTAGAATCTCCTT
102161432 AG
1 AG
102161434 CATTGGTCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (40 bp):
AGATGTCCTCTTAGTATCTGAGATAGATTAGAATCTCCTT
Found at i:102162278 original size:37 final size:37
Alignment explanation
Indices: 102162226--102162303 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
102162216 ACCAAAACTG
*
102162226 TAAAAGAAAAGACTCCATTCAAAACATGGTTTGGAAA
1 TAAAAGAAAAAACTCCATTCAAAACATGGTTTGGAAA
*
102162263 TAAAAGAAAAAACTCCTTTCAAAACATGGTTTGGAAA
1 TAAAAGAAAAAACTCCATTCAAAACATGGTTTGGAAA
102162300 TAAA
1 TAAA
102162304 CTCTATGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.23
Consensus pattern (37 bp):
TAAAAGAAAAAACTCCATTCAAAACATGGTTTGGAAA
Found at i:102167971 original size:46 final size:46
Alignment explanation
Indices: 102167921--102168095 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
102167911 TGGTTGAGCA
*
102167921 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
102167967 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
102168014 TCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
102168060 -CCTGAGCTCGTTGAGTTGAGTCCG-GTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102168096 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 15 0.14
46 49 0.46
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:102168077 original size:93 final size:92
Alignment explanation
Indices: 102167918--102168088 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 92
102167908 GGATGGTTGA
* * *
102167918 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAGT
102167983 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCG-GTTCGTGAGATGTAACTAG
* *
102168011 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCC-GAACTCGTTGAG
102168075 TTGAGTCCGGTTCG
65 TTGAGTCCGGTTCG
102168089 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
92 7 0.10
93 65 0.90
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (92 bp):
GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGGTTCGTGAGATGTAACTAG
Found at i:102178574 original size:17 final size:17
Alignment explanation
Indices: 102178548--102178612 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 17
102178538 AGCTCATTTG
*
102178548 AAGTTTTGAGCTCATCA
1 AAGTTGTGAGCTCATCA
*
102178565 AAGTTGTGAGCTCACCCA
1 AAGTTGTGAGCTCA-TCA
***
102178583 AAGACATGAGCTCATCA
1 AAGTTGTGAGCTCATCA
102178600 AAGTTG-GAGCTCA
1 AAGTTGTGAGCTCA
102178613 ACTTAAGTTG
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
16 7 0.18
17 18 0.47
18 13 0.34
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (17 bp):
AAGTTGTGAGCTCATCA
Found at i:102180883 original size:25 final size:25
Alignment explanation
Indices: 102180854--102180927 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
102180844 TTAGTGACTT
102180854 TGTTAATTTTATGAATTTCATGATG
1 TGTTAATTTTATGAATTTCATGATG
* * *
102180879 TGTT-ATTTCAT--ATGT-AT--TT
1 TGTTAATTTTATGAATTTCATGATG
102180898 TGTTAATTTTATGAATTTCATGATG
1 TGTTAATTTTATGAATTTCATGATG
102180923 TGTTA
1 TGTTA
102180928 TTTCATATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
19 5 0.14
20 6 0.16
21 2 0.05
22 6 0.16
23 2 0.05
24 6 0.16
25 10 0.27
ACGTcount: A:0.26, C:0.04, G:0.15, T:0.55
Consensus pattern (25 bp):
TGTTAATTTTATGAATTTCATGATG
Found at i:102180915 original size:44 final size:44
Alignment explanation
Indices: 102180852--102180940 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
102180842 TTTTAGTGAC
102180852 TTTGTTAATTTTATGAATTTCATGATGTGTTATTTCATATGTAT
1 TTTGTTAATTTTATGAATTTCATGATGTGTTATTTCATATGTAT
102180896 TTTGTTAATTTTATGAATTTCATGATGTGTTATTTCATATGTAT
1 TTTGTTAATTTTATGAATTTCATGATGTGTTATTTCATATGTAT
102180940 T
1 T
102180941 GATGATAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.25, C:0.04, G:0.13, T:0.57
Consensus pattern (44 bp):
TTTGTTAATTTTATGAATTTCATGATGTGTTATTTCATATGTAT
Found at i:102181134 original size:50 final size:51
Alignment explanation
Indices: 102181056--102181184 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
102181046 GACCATGGCA
*
102181056 ACAAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAAGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAAGACAAATG
* *
102181107 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAAGACAAATG
* * *
102181157 ACAAATGAAAAGTGGTAGCTTCGACTAC
1 ACAAGTGATAAGTGATAGCTTCGACTAC
102181185 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 47 0.67
51 23 0.33
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAAGACAAATG
Found at i:102181200 original size:31 final size:31
Alignment explanation
Indices: 102181162--102181277 Score: 153
Period size: 31 Copynumber: 3.7 Consensus size: 31
102181152 AAATGACAAA
*
102181162 TGAAAAGTGGTAGCTTCGACTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
102181193 TGAAAAGTGGTAGCTCCGGCTACCTGATTAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
102181224 TGAAAAATGGTATC-TCTGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTC-GGCTACCTGATCAG
* *
102181255 TGAATAGTGGTAGCTTTGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
102181278 AAGTGACAAG
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
30 1 0.01
31 70 0.97
32 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:102181365 original size:47 final size:46
Alignment explanation
Indices: 102181295--102181418 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
102181285 AAGTGATTTC
* * *
102181295 CGTATAAGACCATATTTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
102181341 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
102181388 CGTGTAAGACCATAGCTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
102181419 ATATGTGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 27 0.40
47 40 0.60
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:102181457 original size:49 final size:48
Alignment explanation
Indices: 102181377--102181508 Score: 168
Period size: 49 Copynumber: 2.9 Consensus size: 48
102181367 GCATCAGTGA
* *
102181377 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGACATCGATATAT
* *
102181425 GATATGTGATTACGTGTAAGACCATGGTTGGGCTATGACATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGACATCGATATAT
*
102181474 GA-A--T-A-T-GTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGACATC
102181509 ATTATGTGAA
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
42 26 0.34
44 1 0.01
45 1 0.01
46 1 0.01
48 12 0.16
49 35 0.46
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGACATCGATATAT
Found at i:102181545 original size:42 final size:42
Alignment explanation
Indices: 102181438--102181552 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 42
102181428 ATGTGATTAC
* * *
102181438 GTGTAAGACCATGGTTGGGCTATGACATCGATATATGAATAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGATATATGAAGAT
* *
102181480 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGA-TATATGAAGAT
***
102181522 GTGTAAGACCATAGTTAAACTATGGCATCGA
1 GTGTAAGACCATAGTTGGGCTATGGCATCGA
102181553 GAAAACGAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.02
42 60 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCGATATATGAAGAT
Found at i:102189489 original size:43 final size:43
Alignment explanation
Indices: 102189428--102189515 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
102189418 GTCTAGAGTG
102189428 TGTTTCATTTGGATGTAAAATCAACTTTCTTGAATGGAGAGCT
1 TGTTTCATTTGGATGTAAAATCAACTTTCTTGAATGGAGAGCT
102189471 TGTTTCATTTGGATGTAAAATCAACTTTCTTGAATGGAGAGCT
1 TGTTTCATTTGGATGTAAAATCAACTTTCTTGAATGGAGAGCT
102189514 TG
1 TG
102189516 AAAAAGATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (43 bp):
TGTTTCATTTGGATGTAAAATCAACTTTCTTGAATGGAGAGCT
Found at i:102196045 original size:19 final size:19
Alignment explanation
Indices: 102196021--102196060 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
102196011 GTTCAATTGC
*
102196021 AAGTATTTCTTGGATTTTT
1 AAGTATTTCTTGGACTTTT
102196040 AAGTATTTCTTGGACTTTT
1 AAGTATTTCTTGGACTTTT
102196059 AA
1 AA
102196061 CCCAATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.53
Consensus pattern (19 bp):
AAGTATTTCTTGGACTTTT
Found at i:102202370 original size:5 final size:5
Alignment explanation
Indices: 102202360--102202401 Score: 68
Period size: 5 Copynumber: 8.4 Consensus size: 5
102202350 AATTTGTGTG
102202360 TTATT TTATT TT-TCT TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TTATT TT
102202402 TTTCACAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 1 0.03
5 33 0.94
6 1 0.03
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:102206829 original size:5 final size:5
Alignment explanation
Indices: 102206819--102206858 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
102206809 AATTTGTGTG
102206819 TTATT TTATT TT-TCT TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TTATT
102206859 CACAAGATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 1 0.03
5 31 0.94
6 1 0.03
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:102210587 original size:20 final size:20
Alignment explanation
Indices: 102210551--102210588 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
102210541 ATCCTTCTAC
*
102210551 TTTATAATTACTGAATTTAA
1 TTTATAATTACTCAATTTAA
102210571 TTTATAATATA-TCAATTT
1 TTTATAAT-TACTCAATTT
102210589 TTTATAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (20 bp):
TTTATAATTACTCAATTTAA
Found at i:102211108 original size:21 final size:18
Alignment explanation
Indices: 102211073--102211118 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
102211063 AGTTAAAAAT
102211073 ATTTTTATTATTATTTAAA
1 ATTTTTATTATTATTT-AA
*
102211092 ATTTTTATTATAATATTTGA
1 ATTTTTATTAT--TATTTAA
102211112 ATTTTTA
1 ATTTTTA
102211119 AAAAAGTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 11 0.46
20 8 0.33
21 5 0.21
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTTTTATTATTATTTAA
Found at i:102215454 original size:11 final size:11
Alignment explanation
Indices: 102215438--102215468 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
102215428 GAGAAGAGAT
*
102215438 GATGAATGAGG
1 GATGAACGAGG
102215449 GATGAACGAGG
1 GATGAACGAGG
102215460 GATGAACGA
1 GATGAACGA
102215469 AATGAGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.39, C:0.06, G:0.42, T:0.13
Consensus pattern (11 bp):
GATGAACGAGG
Found at i:102227881 original size:26 final size:26
Alignment explanation
Indices: 102227821--102227872 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
102227811 AGAATTCAAC
102227821 GATAATTAAACTTAATCACTCTAATA
1 GATAATTAAACTTAATCACTCTAATA
102227847 GATAATTAAACTTAATCACTCTAATA
1 GATAATTAAACTTAATCACTCTAATA
102227873 TTAAATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (26 bp):
GATAATTAAACTTAATCACTCTAATA
Found at i:102229812 original size:21 final size:22
Alignment explanation
Indices: 102229786--102229842 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
102229776 GTGAAGGGTA
102229786 GCACACGGTCGTGTGT-TAGAG
1 GCACACGGTCGTGTGTATAGAG
*
102229807 GCACACGCTCGTGTGGTATAGAG
1 GCACACGGTCGTGT-GTATAGAG
102229830 GCACA--GTCGTGTG
1 GCACACGGTCGTGTG
102229843 ATCAGGCCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 1 0.03
21 19 0.59
22 2 0.06
23 10 0.31
ACGTcount: A:0.19, C:0.21, G:0.37, T:0.23
Consensus pattern (22 bp):
GCACACGGTCGTGTGTATAGAG
Found at i:102230476 original size:21 final size:20
Alignment explanation
Indices: 102230438--102230492 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
102230428 CCATCGATTC
*
102230438 CAAAAAGCAAAAAGAAGAACA
1 CAAAAA-CAAAAACAAGAACA
*
102230459 CAAAAACAAAAACCAAGAAGA
1 CAAAAACAAAAA-CAAGAACA
*
102230480 AACAAAACAAAAA
1 CA-AAAACAAAAA
102230493 ATAACGTGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.21
21 13 0.45
22 10 0.34
ACGTcount: A:0.75, C:0.16, G:0.09, T:0.00
Consensus pattern (20 bp):
CAAAAACAAAAACAAGAACA
Found at i:102237698 original size:22 final size:22
Alignment explanation
Indices: 102237673--102237737 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
102237663 TGCTTGCAAA
102237673 TTGAAGCTCTAAATACAAAGAT
1 TTGAAGCTCTAAATACAAAGAT
*
102237695 TTGAGAG-TC---AGA-AAAGA-
1 TTGA-AGCTCTAAATACAAAGAT
102237712 TTGAAGCTCTAAATACAAAGAT
1 TTGAAGCTCTAAATACAAAGAT
102237734 TTGA
1 TTGA
102237738 GAGTCAGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
16 2 0.06
17 6 0.18
18 5 0.15
19 2 0.06
20 2 0.06
21 5 0.15
22 10 0.29
23 2 0.06
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.26
Consensus pattern (22 bp):
TTGAAGCTCTAAATACAAAGAT
Found at i:102237712 original size:18 final size:18
Alignment explanation
Indices: 102237689--102237751 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 18
102237679 CTCTAAATAC
102237689 AAAGATTTGAGAGTCAGA
1 AAAGATTTGAGAGTCAGA
*
102237707 AAAGA-TTGA-AGCTCTAAATA
1 AAAGATTTGAGAG-TC---AGA
102237727 CAAAGATTTGAGAGTCAGA
1 -AAAGATTTGAGAGTCAGA
102237746 AAAGAT
1 AAAGAT
102237752 ATTACAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
16 2 0.06
17 6 0.17
18 11 0.31
19 2 0.06
20 2 0.06
21 5 0.14
22 6 0.17
23 2 0.06
ACGTcount: A:0.48, C:0.08, G:0.22, T:0.22
Consensus pattern (18 bp):
AAAGATTTGAGAGTCAGA
Found at i:102237726 original size:39 final size:39
Alignment explanation
Indices: 102237672--102237751 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
102237662 GTGCTTGCAA
102237672 ATTGAAGCTCTAAATACAAAGATTTGAGAGTCAGAAAAG
1 ATTGAAGCTCTAAATACAAAGATTTGAGAGTCAGAAAAG
102237711 ATTGAAGCTCTAAATACAAAGATTTGAGAGTCAGAAAAG
1 ATTGAAGCTCTAAATACAAAGATTTGAGAGTCAGAAAAG
102237750 AT
1 AT
102237752 ATTACAATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (39 bp):
ATTGAAGCTCTAAATACAAAGATTTGAGAGTCAGAAAAG
Found at i:102237733 original size:21 final size:21
Alignment explanation
Indices: 102237672--102237734 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
102237662 GTGCTTGCAA
102237672 ATTGAAGCTCTAAATACAAAG
1 ATTGAAGCTCTAAATACAAAG
*
102237693 ATTTGAGAG-TC---AGA-AAAG
1 A-TTGA-AGCTCTAAATACAAAG
102237711 ATTGAAGCTCTAAATACAAAG
1 ATTGAAGCTCTAAATACAAAG
102237732 ATT
1 ATT
102237735 TGAGAGTCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
16 2 0.06
17 6 0.18
18 5 0.15
19 2 0.06
20 2 0.06
21 8 0.24
22 6 0.18
23 2 0.06
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.25
Consensus pattern (21 bp):
ATTGAAGCTCTAAATACAAAG
Found at i:102242375 original size:52 final size:52
Alignment explanation
Indices: 102242297--102242424 Score: 238
Period size: 52 Copynumber: 2.5 Consensus size: 52
102242287 CTATACCCTA
*
102242297 AGGGATAGCATCAAGCTCTGTATTCCTTAATATTTGAATATTCTAAAAGAAG
1 AGGGATAGCATCATGCTCTGTATTCCTTAATATTTGAATATTCTAAAAGAAG
*
102242349 AGGGATAGCATCATGCTCTGTATTCCTTAATATTTGAGTATTCTAAAAGAAG
1 AGGGATAGCATCATGCTCTGTATTCCTTAATATTTGAATATTCTAAAAGAAG
102242401 AGGGATAGCATCATGCTCTGTATT
1 AGGGATAGCATCATGCTCTGTATT
102242425 TATAGATAAA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.34
Consensus pattern (52 bp):
AGGGATAGCATCATGCTCTGTATTCCTTAATATTTGAATATTCTAAAAGAAG
Found at i:102251352 original size:3 final size:3
Alignment explanation
Indices: 102251344--102251369 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
102251334 TCTCCTGATT
102251344 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
102251370 TTAGAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:102251838 original size:6 final size:7
Alignment explanation
Indices: 102251819--102251854 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
102251809 TTGAACCTTC
102251819 GCTTTTT
1 GCTTTTT
102251826 GCTTTTT
1 GCTTTTT
102251833 GCTTTTT
1 GCTTTTT
102251840 GCTTTTT
1 GCTTTTT
*
102251847 GCCTTTT
1 GCTTTTT
102251854 G
1 G
102251855 TCTTCTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.00, C:0.17, G:0.17, T:0.67
Consensus pattern (7 bp):
GCTTTTT
Found at i:102253841 original size:121 final size:121
Alignment explanation
Indices: 102253681--102253921 Score: 448
Period size: 121 Copynumber: 2.0 Consensus size: 121
102253671 TGGAATTATT
102253681 TACTATAACGACAAATTTTTGGGAGATCTTTCACTGCCTATTTAACTGCTTCCATATAGATTGCT
1 TACTATAACGACAAATTTTTGGGAGATCTTTCACTGCCTATTTAACTGCTTCCATATAGATTGCT
* *
102253746 TGCTCATGAGCAAAGGTTATATCAACTTGGTCTCCTGTGTATCATAGCCATTGTTG
66 TGCTCATAAGCAAAGGTTATATCAACTTGATCTCCTGTGTATCATAGCCATTGTTG
102253802 TACTAT-ACTGACAAATTTTTGGGAGATCTTTCACTGCCTATTTAACTGCTTCCATATAGATTGC
1 TACTATAAC-GACAAATTTTTGGGAGATCTTTCACTGCCTATTTAACTGCTTCCATATAGATTGC
102253866 TTGCTCATAAGCAAAGGTTATATCAACTTGATCTCCTGTGTATCATAGCCATTGTT
65 TTGCTCATAAGCAAAGGTTATATCAACTTGATCTCCTGTGTATCATAGCCATTGTT
102253922 TGTTGTAATT
Statistics
Matches: 117, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
120 2 0.02
121 115 0.98
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (121 bp):
TACTATAACGACAAATTTTTGGGAGATCTTTCACTGCCTATTTAACTGCTTCCATATAGATTGCT
TGCTCATAAGCAAAGGTTATATCAACTTGATCTCCTGTGTATCATAGCCATTGTTG
Found at i:102257450 original size:25 final size:25
Alignment explanation
Indices: 102257411--102257464 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
102257401 AAATTTTCTC
102257411 AAAATTTTATCAATTT-TTTTTGTTT
1 AAAATTTTATCAATTTATTTTT-TTT
* *
102257436 AAAATTTTTTGAATTTAATTTTTTTT
1 AAAATTTTATCAATTT-ATTTTTTTT
102257462 AAA
1 AAA
102257465 TTAAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 14 0.56
26 6 0.24
27 5 0.20
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (25 bp):
AAAATTTTATCAATTTATTTTTTTT
Found at i:102257673 original size:48 final size:48
Alignment explanation
Indices: 102257563--102257697 Score: 168
Period size: 48 Copynumber: 2.8 Consensus size: 48
102257553 AGTGATAATT
* * *
102257563 TTAAATTTTCAATACTATTCGATATTTTTTTTAATTTATGCAAATTTAA
1 TTAAAATTTCAATACTATTTGATA-TTTTTTTCATTTATGCAAATTTAA
*
102257612 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAAATTT-CAATACTATTTGATATTTTTTTCATTTATGCAAATT-TAA
**
102257660 TTAAAATTTCAATACTGCTTGAT-TTTTTTTCATTTATG
1 TTAAAATTTCAATACTATTTGATATTTTTTTCATTTATG
102257698 ATGTTTGCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
47 18 0.24
48 36 0.47
49 22 0.29
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.53
Consensus pattern (48 bp):
TTAAAATTTCAATACTATTTGATATTTTTTTCATTTATGCAAATTTAA
Found at i:102258690 original size:7 final size:7
Alignment explanation
Indices: 102258679--102258710 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
102258669 AGTCGTTTCA
*
102258679 TATTTAA
1 TATTTAG
102258686 TATTTAG
1 TATTTAG
102258693 TATTTAG
1 TATTTAG
102258700 TATTTAG
1 TATTTAG
102258707 TATT
1 TATT
102258711 ATGTATTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:102259328 original size:18 final size:18
Alignment explanation
Indices: 102259305--102259347 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
102259295 TGCCAGGTGC
* *
102259305 GTATCCTAGCCTTTATAT
1 GTATCCTAACCCTTATAT
102259323 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
102259341 GTTTCCT
1 GTATCCT
102259348 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Done.