Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 311 of 344
Found at i:102565198 original size:25 final size:25
Alignment explanation
Indices: 102565170--102565219 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
102565160 AGGAGAGAAT
102565170 ATGAAGAACGAAAGAAGGAAAAGGA
1 ATGAAGAACGAAAGAAGGAAAAGGA
*
102565195 ATGAAGAACGAAAGAAGGAGAAGGA
1 ATGAAGAACGAAAGAAGGAAAAGGA
102565220 GCCTTACCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.58, C:0.04, G:0.34, T:0.04
Consensus pattern (25 bp):
ATGAAGAACGAAAGAAGGAAAAGGA
Found at i:102572158 original size:26 final size:25
Alignment explanation
Indices: 102572126--102572212 Score: 84
Period size: 26 Copynumber: 3.3 Consensus size: 25
102572116 ATGTTTTTAA
102572126 TATACTTAAATTTGAGATTTAATTTT
1 TATACTTAAATTTGA-ATTTAATTTT
** * *
102572152 TATACTTCTATTTCAATTTTAATCTTAA
1 TATACTTAAATTTGAA-TTTAAT-TT-T
*
102572180 TATATTTAAATTTGACATTTAATTTT
1 TATACTTAAATTTGA-ATTTAATTTT
102572206 TATACTT
1 TATACTT
102572213 TAATCTTTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
25 1 0.02
26 24 0.51
27 4 0.09
28 17 0.36
29 1 0.02
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.55
Consensus pattern (25 bp):
TATACTTAAATTTGAATTTAATTTT
Found at i:102572590 original size:26 final size:27
Alignment explanation
Indices: 102572537--102572590 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
102572527 ATTGATAAAG
*
102572537 ATTATTTTTATATAAATTTAATTCTAC
1 ATTATTTTTATATAAATTTAATTATAC
*
102572564 ATTATTTTTTTA-AAATATTAA-TATAC
1 ATTATTTTTATATAAAT-TTAATTATAC
102572590 A
1 A
102572591 AAGTTATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.54
Consensus pattern (27 bp):
ATTATTTTTATATAAATTTAATTATAC
Found at i:102572968 original size:6 final size:6
Alignment explanation
Indices: 102572957--102572984 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
102572947 TCATTTTGCA
102572957 ATAATT ATAATT ATAATT ATAATT ATAA
1 ATAATT ATAATT ATAATT ATAATT ATAA
102572985 ATGTGAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
ATAATT
Found at i:102591081 original size:10 final size:10
Alignment explanation
Indices: 102591053--102591135 Score: 61
Period size: 10 Copynumber: 8.8 Consensus size: 10
102591043 ATTTTCCCTT
*
102591053 AAAAATCATA
1 AAAAATTATA
102591063 AAAAA--ATA
1 AAAAATTATA
102591071 AAAAATTATA
1 AAAAATTATA
*
102591081 AAAAGA-TATT
1 AAAA-ATTATA
*
102591091 AAAATTTATA
1 AAAAATTATA
* *
102591101 TAAACTTAT-
1 AAAAATTATA
*
102591110 AAATATTAT-
1 AAAAATTATA
102591119 AAAAA-TATA
1 AAAAATTATA
102591128 AAAAATTA
1 AAAAATTA
102591136 ATGAAACCTA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
8 11 0.19
9 15 0.26
10 31 0.53
11 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.30
Consensus pattern (10 bp):
AAAAATTATA
Found at i:102591094 original size:19 final size:18
Alignment explanation
Indices: 102591054--102591135 Score: 65
Period size: 19 Copynumber: 4.4 Consensus size: 18
102591044 TTTTCCCTTA
* *
102591054 AAAATCATAAAAAAATAA
1 AAAATTATAAAAAAATAT
*
102591072 AAAATTATAAAAAGATATT
1 AAAATTATAAAAAAATA-T
* **
102591091 AAAATTTATATAAACTTAT
1 AAAA-TTATAAAAAAATAT
* *
102591110 AAATATTATAAAAATATAA
1 AAA-ATTATAAAAAAATAT
102591129 AAAATTA
1 AAAATTA
102591136 ATGAAACCTA
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
18 19 0.37
19 21 0.41
20 11 0.22
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.30
Consensus pattern (18 bp):
AAAATTATAAAAAAATAT
Found at i:102591121 original size:49 final size:48
Alignment explanation
Indices: 102591068--102591229 Score: 129
Period size: 49 Copynumber: 3.4 Consensus size: 48
102591058 TCATAAAAAA
102591068 ATAAAAAATTATAAAAAGA-TATTAAAATTTATATAAACTTATAAATATT
1 ATAAAAAATTATAAAAA-ATTATTAAAA-TTATATAAACTTATAAATATT
* ** *
102591117 AT-AAAAA-TATAAAAAATTAATGAAACCTATTTAAAAC--A-AAATATAT
1 ATAAAAAATTATAAAAAATT-ATTAAAATTATAT-AAACTTATAAATAT-T
* * * * *
102591163 ATTAGAATTCTTTAAAAAATTATTAAAATTATATAAACTTATAAAAATT
1 ATAAAAAAT-TATAAAAAATTATTAAAATTATATAAACTTATAAATATT
*
102591212 ATAAAACAATCATAAAAA
1 ATAAAA-AATTATAAAAA
102591230 CTTGAATTAG
Statistics
Matches: 85, Mismatches: 17, Indels: 22
0.69 0.14 0.18
Matches are distributed among these distances:
45 6 0.07
46 5 0.06
47 20 0.24
48 23 0.27
49 24 0.28
50 7 0.08
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (48 bp):
ATAAAAAATTATAAAAAATTATTAAAATTATATAAACTTATAAATATT
Found at i:102591199 original size:10 final size:10
Alignment explanation
Indices: 102591178--102591214 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
102591168 AATTCTTTAA
102591178 AAAATTAT-T
1 AAAATTATAT
102591187 AAAATTATAT
1 AAAATTATAT
*
102591197 AAACTTATA-
1 AAAATTATAT
102591206 AAAATTATA
1 AAAATTATA
102591215 AAACAATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTATAT
Found at i:102591209 original size:19 final size:18
Alignment explanation
Indices: 102591177--102591218 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
102591167 GAATTCTTTA
* *
102591177 AAAAATTATTAAAATTAT
1 AAAACTTATAAAAATTAT
102591195 ATAAACTTATAAAAATTAT
1 A-AAACTTATAAAAATTAT
102591214 AAAAC
1 AAAAC
102591219 AATCATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAACTTATAAAAATTAT
Found at i:102593254 original size:113 final size:112
Alignment explanation
Indices: 102593044--102593251 Score: 323
Period size: 113 Copynumber: 1.9 Consensus size: 112
102593034 AATAAATGAT
*
102593044 TTATCTTAGATAAAAAGAAGTAATTTATCTCCTATTATATGAATATCCACAATAATTTATTATTT
1 TTATCTTAGATAAAAAGAAATAATTTATCTCCTATTATATGAATATCCACAATAATTTATTATTT
102593109 ATAAATATTTATAAATATTAAATTAAAAATAATGTAAATATATATATA
66 ATAAATA-TTATAAATATTAAATTAAAAATAATGTAAATATATATATA
* * **
102593157 TTATCTTAGATAGAAAGAAATAATTTATCTCCTATTATATGGATATTTACAATAATTTATTATTT
1 TTATCTTAGATAAAAAGAAATAATTTATCTCCTATTATATGAATATCCACAATAATTTATTATTT
*
102593222 ATAACA-A-T-TAAATGTTAAATTAAAAATAAT
66 ATAA-ATATTATAAATATTAAATTAAAAATAAT
102593252 AATATGACGG
Statistics
Matches: 88, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
110 21 0.24
111 1 0.01
113 65 0.74
114 1 0.01
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (112 bp):
TTATCTTAGATAAAAAGAAATAATTTATCTCCTATTATATGAATATCCACAATAATTTATTATTT
ATAAATATTATAAATATTAAATTAAAAATAATGTAAATATATATATA
Found at i:102595483 original size:22 final size:22
Alignment explanation
Indices: 102595426--102595497 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
102595416 AAAAAATAAT
* *
102595426 AAAATAGTAACAATATAATAGC
1 AAAATAGTAACAAAATAACAGC
* * * *
102595448 AAAATGGCAGCAAAATAACATC
1 AAAATAGTAACAAAATAACAGC
* * *
102595470 AAAATTGTAAC-AAACAACAAC
1 AAAATAGTAACAAAATAACAGC
102595491 AAAATAG
1 AAAATAG
102595498 CAGCAAAACA
Statistics
Matches: 38, Mismatches: 12, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
21 14 0.37
22 24 0.63
ACGTcount: A:0.60, C:0.14, G:0.10, T:0.17
Consensus pattern (22 bp):
AAAATAGTAACAAAATAACAGC
Found at i:102595504 original size:21 final size:21
Alignment explanation
Indices: 102595447--102595504 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
102595437 AATATAATAG
* * *
102595447 CAAAATGGCAGCAAAATAACAT
1 CAAAATAGCAGC-AAACAACAA
* * *
102595469 CAAAATTGTAACAAACAACAA
1 CAAAATAGCAGCAAACAACAA
102595490 CAAAATAGCAGCAAA
1 CAAAATAGCAGCAAA
102595505 ACAATAGTGA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.59, C:0.19, G:0.10, T:0.12
Consensus pattern (21 bp):
CAAAATAGCAGCAAACAACAA
Found at i:102595937 original size:60 final size:60
Alignment explanation
Indices: 102595839--102595956 Score: 139
Period size: 60 Copynumber: 2.0 Consensus size: 60
102595829 TCCTTTATTT
* * **
102595839 GTCCAAGTTAGGGCTTAAACTTGACAATTGTTTCCACATTGGGGCCTGAAATTTTTTTTG
1 GTCCAAGTTAGGCCTTAAACTTGACAATTGTTTCCACATTAGAACCTGAAATTTTTTTTG
* * * * *
102595899 GTCCAAGTTTGGCCTTGAGCTTGGCAATTG-TTCTCACATTAGAACCTGAACTTTTTTT
1 GTCCAAGTTAGGCCTTAAACTTGACAATTGTTTC-CACATTAGAACCTGAAATTTTTTT
102595957 ATTCAAGTTA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
59 3 0.06
60 45 0.94
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (60 bp):
GTCCAAGTTAGGCCTTAAACTTGACAATTGTTTCCACATTAGAACCTGAAATTTTTTTTG
Found at i:102599655 original size:13 final size:14
Alignment explanation
Indices: 102599616--102599660 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
102599606 TTATAAACTT
*
102599616 TAAATCTTAAATCC
1 TAAATCTCAAATCC
*
102599630 TAGATCTCAAATCC
1 TAAATCTCAAATCC
*
102599644 TAAATC-CAAATCT
1 TAAATCTCAAATCC
102599657 TAAA
1 TAAA
102599661 CTTAAATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.31
Consensus pattern (14 bp):
TAAATCTCAAATCC
Found at i:102603534 original size:3 final size:3
Alignment explanation
Indices: 102603526--102603554 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
102603516 TCTTCAACTC
102603526 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
102603555 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:102606644 original size:22 final size:22
Alignment explanation
Indices: 102606619--102606662 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
102606609 GCTCTATGTG
*
102606619 TTCATCCATTCACCATGTCATT
1 TTCATCCACTCACCATGTCATT
102606641 TTCATCCACTCACCATGTCATT
1 TTCATCCACTCACCATGTCATT
102606663 CTGCATCAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.34, G:0.05, T:0.39
Consensus pattern (22 bp):
TTCATCCACTCACCATGTCATT
Found at i:102607594 original size:26 final size:26
Alignment explanation
Indices: 102607546--102607595 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
102607536 TTATTTTTAG
* *
102607546 ATAAAACTAATTAAATATAAATATGA
1 ATAAAACTAAATAAATAAAAATATGA
102607572 ATAAAA-TAAATAAATAAATAATAT
1 ATAAAACTAAATAAATAAA-AATAT
102607596 TATTAGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
ATAAAACTAAATAAATAAAAATATGA
Found at i:102612117 original size:18 final size:19
Alignment explanation
Indices: 102612094--102612129 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
102612084 GTTTTTGGAG
102612094 TTTGAGAG-AAGTAAAAGT
1 TTTGAGAGAAAGTAAAAGT
102612112 TTTGAGAGAAAGTAAAAG
1 TTTGAGAGAAAGTAAAAG
102612130 GAAATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.47, C:0.00, G:0.28, T:0.25
Consensus pattern (19 bp):
TTTGAGAGAAAGTAAAAGT
Found at i:102612524 original size:22 final size:21
Alignment explanation
Indices: 102612499--102612548 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
102612489 CCTGCATAAA
102612499 TTAAATTT-TTAGTTTTTATATT
1 TTAAATTTATTA-TTTTTA-ATT
102612521 TT-AATTTAGTTATTTTTAATT
1 TTAAATTTA-TTATTTTTAATT
*
102612542 TAAAATT
1 TTAAATT
102612549 CTAAAAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
21 9 0.38
22 12 0.50
23 3 0.12
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (21 bp):
TTAAATTTATTATTTTTAATT
Found at i:102612537 original size:15 final size:16
Alignment explanation
Indices: 102612514--102612543 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
102612504 TTTTTAGTTT
102612514 TTATATTTTAATTTAG
1 TTATATTTTAATTTAG
102612530 TTAT-TTTTAATTTA
1 TTATATTTTAATTTA
102612544 AAATTCTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (16 bp):
TTATATTTTAATTTAG
Found at i:102612974 original size:10 final size:9
Alignment explanation
Indices: 102612961--102613012 Score: 52
Period size: 10 Copynumber: 5.4 Consensus size: 9
102612951 GTTAAAAAAT
102612961 AATTTTCAAA
1 AATTTT-AAA
*
102612971 AATTTAAAA
1 AATTTTAAA
102612980 TAATTTT-AA
1 -AATTTTAAA
102612989 AATTTTAAA
1 AATTTTAAA
102612998 ATATTTATAAA
1 A-ATTT-TAAA
102613009 AATT
1 AATT
102613013 CCAGAAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
8 6 0.17
9 8 0.22
10 17 0.47
11 5 0.14
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (9 bp):
AATTTTAAA
Found at i:102612995 original size:19 final size:19
Alignment explanation
Indices: 102612956--102613012 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
102612946 AAAATGTTAA
102612956 AAAATAATTTTCAAAAATTT
1 AAAATAATTTT-AAAAATTT
*
102612976 AAAATAATTTTAAAATTTT
1 AAAATAATTTTAAAAATTT
102612995 AAAAT-ATTTATAAAAATT
1 AAAATAATTT-TAAAAATT
102613013 CCAGAAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 4 0.12
19 19 0.56
20 11 0.32
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTT
Found at i:102617339 original size:41 final size:41
Alignment explanation
Indices: 102617268--102617348 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 41
102617258 ACATGGTCAG
*
102617268 GGACACGAGCGTGTACCCAGGCCGTATGAGTCACACAGGCAA
1 GGACACGAGCATGTACCCAGGCCGTATGAGTCACA-AGGCAA
** *
102617310 GGACACGAGCATGTGTCCA-GCCGTGTGAGTCACAAGGCA
1 GGACACGAGCATGTACCCAGGCCGTATGAGTCACAAGGCA
102617349 TGTGTCCAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 5 0.14
41 14 0.40
42 16 0.46
ACGTcount: A:0.27, C:0.27, G:0.32, T:0.14
Consensus pattern (41 bp):
GGACACGAGCATGTACCCAGGCCGTATGAGTCACAAGGCAA
Found at i:102633825 original size:40 final size:42
Alignment explanation
Indices: 102633722--102633883 Score: 170
Period size: 49 Copynumber: 3.7 Consensus size: 42
102633712 CTTCGTTTTC
**
102633722 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACA-CTTCACATAA
* *
102633765 T-GATGCCATAGCCCAGCTATGGTCTTACACA-TTCATAT-A
1 TCGATGCCATAGCCCAACTATGGTCTTACACACTTCACATAA
102633804 TCGATGCCATAGCCCAACTATGGTCTTACACGTAATCACATATCACAT-A
1 TCGATGCCATAGCCCAACTATGGTCTT--AC---A-CAC-T-TCACATAA
*
102633853 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAACTATGGTCTTACAC
102633884 GAATCACATA
Statistics
Matches: 102, Mismatches: 7, Indels: 20
0.79 0.05 0.16
Matches are distributed among these distances:
39 2 0.02
40 30 0.29
42 29 0.28
43 2 0.02
44 1 0.01
45 1 0.01
46 2 0.02
47 2 0.02
48 1 0.01
49 32 0.31
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACACTTCACATAA
Found at i:102633863 original size:49 final size:48
Alignment explanation
Indices: 102633792--102633926 Score: 179
Period size: 49 Copynumber: 2.9 Consensus size: 48
102633782 TATGGTCTTA
*
102633792 CACAT-TCATATATCGATGCCATAGCCCAACTATGGTCTTACACGTAAT
1 CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTACACG-AAT
*
102633840 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTACACGAAT
* * *
102633888 CACATATCTCA-CT-GATGCCATATCCCAGA-TATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCA-ACTATGGTCTTA
102633927 TACAGTAGCA
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
46 23 0.29
47 1 0.01
48 18 0.23
49 37 0.47
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTACACGAAT
Found at i:102633921 original size:46 final size:50
Alignment explanation
Indices: 102633805--102633980 Score: 143
Period size: 54 Copynumber: 3.5 Consensus size: 50
102633795 ATTCATATAT
* * * *
102633805 CGATGCCATAGCCCA-ACTATGGTCTTACA-CGTA-AT-CACATATCACATAT
1 CGATGCCATATCCCAGA-TATGGTCTTACAGAGCATATACACATATCAC--AC
* * * *
102633854 CGATGCCATAGCCCAGCTATGGTCTTACA-CG-A-AT-CACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACAGAGCATATACACATATCACAC
* *
102633900 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTC-T-TACAG-AGCATATA-CACATATCACAC
102633954 CGATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
102633981 TATTGAAATC
Statistics
Matches: 108, Mismatches: 10, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
46 22 0.20
47 1 0.01
48 16 0.15
49 29 0.27
50 1 0.01
51 1 0.01
52 4 0.04
53 1 0.01
54 33 0.31
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (50 bp):
CGATGCCATATCCCAGATATGGTCTTACAGAGCATATACACATATCACAC
Found at i:102634037 original size:31 final size:31
Alignment explanation
Indices: 102634002--102634088 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
102633992 CTTGTCACTT
*
102634002 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
102634033 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
102634064 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
102634089 TGTCATTTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:102634161 original size:50 final size:50
Alignment explanation
Indices: 102634064--102634240 Score: 264
Period size: 50 Copynumber: 3.5 Consensus size: 50
102634054 CACTGATCAG
* * * * *
102634064 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCCTTAATCAGATAGGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* * *
102634115 GTAGCTGAAGTTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
102634165 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
102634215 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
102634241 GTTGCCATGG
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 92 0.81
51 22 0.19
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:102638024 original size:23 final size:23
Alignment explanation
Indices: 102637980--102638024 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
102637970 TTTATTTTTA
*
102637980 TTTTTTTCCATTTTTTTAATATG
1 TTTTTTTCCATTTTTATAATATG
*
102638003 TTTTTTTTC-TTTTTATACATAT
1 TTTTTTTCCATTTTTATA-ATAT
102638025 ACGTATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTTTTCCATTTTTATAATATG
Found at i:102643186 original size:22 final size:22
Alignment explanation
Indices: 102643158--102643210 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
102643148 TGGGCGTGAT
102643158 AATTATCCTTTAAAAAAATTCA
1 AATTATCCTTTAAAAAAATTCA
102643180 AATTATCCTTTAAAAAAATTCA
1 AATTATCCTTTAAAAAAATTCA
102643202 AATTATCCT
1 AATTATCCT
102643211 ATTTAACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (22 bp):
AATTATCCTTTAAAAAAATTCA
Found at i:102645599 original size:46 final size:46
Alignment explanation
Indices: 102645532--102645706 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
102645522 TGTAACCCGA
*
102645532 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
102645578 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * *
102645628 -C-TTA-CGAACTCGGACTCAACTCAACGAGTTCGAGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
*
102645671 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
102645707 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:102645646 original size:93 final size:93
Alignment explanation
Indices: 102645540--102645710 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
102645530 GACCATAAGT
* * *
102645540 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102645605 CGAGCTCGGATGCCTAGTTACATCTTAC
66 CGAGCTCGGATGCCTAGTTACATCTTAC
*
102645633 GAACTCGGACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
102645698 CGAGTTCGGATGC
66 CGAGCTCGGATGC
102645711 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTTAC
Found at i:102645726 original size:46 final size:46
Alignment explanation
Indices: 102645537--102645726 Score: 144
Period size: 46 Copynumber: 4.1 Consensus size: 46
102645527 CCCGACCATA
***
102645537 AGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGT-TTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-TCAACCATCC-T
*
102645582 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATCCT
* * * * * *
102645631 A-CGAACTCGGACTCAACTCAACGAGTTCGAGCATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCG-G-ATGCTCAACCATCCT
*
102645676 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
102645722 AGTGA
1 AGTGA
102645727 CATGTCACTT
Statistics
Matches: 117, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 63 0.54
47 29 0.25
48 4 0.03
49 5 0.04
50 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:102649179 original size:46 final size:45
Alignment explanation
Indices: 102649085--102649249 Score: 138
Period size: 46 Copynumber: 3.6 Consensus size: 45
102649075 GTCGATGCCG
* * * * * *
102649085 TGTCCCAGACAGGTCTTACACTGACACATGTAACCGTGAC-GATACA
1 TGTCCCAGACATGTCTTACACTGGCTCGTCTAA--ATGACTGATACA
*
102649131 TGTCCCAGACATGTCTTACACTGGCTC-TCATAATATGACTGATGCA
1 TGTCCCAGACATGTCTTACACTGGCTCGTC-TAA-ATGACTGATACA
* * *
102649177 TGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATG-CTGATTTCA
1 TGTCCCAGACATGTCTTACACT-G-GCTCGTCTAAATGACTGA-TACA
*
102649224 TGTCCTAGACATGGTCTTACACTGGC
1 TGTCCCAGACAT-GTCTTACACTGGC
102649250 ACACAAATTT
Statistics
Matches: 100, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
45 5 0.05
46 59 0.59
47 19 0.19
48 15 0.15
49 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGGCTCGTCTAAATGACTGATACA
Found at i:102653433 original size:28 final size:28
Alignment explanation
Indices: 102653372--102653433 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
102653362 TCAGTGTACG
* * **
102653372 AAATATTGAGAATGGCACTTTGTGTGTG
1 AAATATTGAGAATGACACTTAGTGTGCA
*
102653400 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
102653428 AAATAT
1 AAATAT
102653434 CGAATGATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.32
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:102655203 original size:46 final size:45
Alignment explanation
Indices: 102655110--102655195 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
102655100 TACATCTCAC
* *
102655110 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCG-ACATGCGCAACCATAAGT
* *
102655156 GAACTCGGACTCAACTCAACGAGTTCG-GATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGACATGCGCAACCAT
102655196 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGACATGCGCAACCATAAGT
Found at i:102657808 original size:49 final size:50
Alignment explanation
Indices: 102657730--102657962 Score: 290
Period size: 49 Copynumber: 4.7 Consensus size: 50
102657720 ATCTATTGTG
*
102657730 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
102657780 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
102657830 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
** * *
102657880 AGGTCATGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
102657930 -GGTCGCATGTGTAGTACTTAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
102657963 TGCGTATCAG
Statistics
Matches: 155, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 71 0.46
50 45 0.29
51 39 0.25
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:102657920 original size:101 final size:98
Alignment explanation
Indices: 102657733--102657975 Score: 297
Period size: 100 Copynumber: 2.4 Consensus size: 98
102657723 TATTGTGAGG
* * * *
102657733 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGTAGTACT
* *
102657798 AAGTGCAGGCTACTATGTGTACCCGATAACTTCGA
66 AAGTGAAGGCTACTACGTGTACCCGATAA-TT-GA
* ** **
102657833 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCACATGTGTAGTAC
** *
102657898 TAAGTGAAGGCTACTACGTGTACTGGATAATTGG
65 TAAGTGAAGGCTACTACGTGTACCCGATAATTGA
* * * *
102657932 TCGCATGTGTAGTACTTAGTGCAGGCTACTATGCGTATCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATA
102657976 GCTTTGGCTA
Statistics
Matches: 122, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 39 0.32
100 43 0.35
101 40 0.33
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (98 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGTAGTACT
AAGTGAAGGCTACTACGTGTACCCGATAATTGA
Found at i:102666201 original size:18 final size:19
Alignment explanation
Indices: 102666175--102666211 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
102666165 CATAACTGGA
102666175 AAATCTAAAAA-AGGTTTT
1 AAATCTAAAAATAGGTTTT
*
102666193 AAATGTAAAAATAGGTTTT
1 AAATCTAAAAATAGGTTTT
102666212 CATAGTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.49, C:0.03, G:0.14, T:0.35
Consensus pattern (19 bp):
AAATCTAAAAATAGGTTTT
Found at i:102668826 original size:12 final size:12
Alignment explanation
Indices: 102668811--102668863 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
102668801 TTCAGTTTCC
*
102668811 GGTTTGGTCTCT
1 GGTTTGGCCTCT
102668823 GGTTTGGCCTCCT
1 GGTTTGGCCT-CT
*
102668836 -CTTTGGCCTCT
1 GGTTTGGCCTCT
* *
102668847 TGTTTGGTCTCT
1 GGTTTGGCCTCT
102668859 GGTTT
1 GGTTT
102668864 AGGAATTGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
11 2 0.06
12 30 0.88
13 2 0.06
ACGTcount: A:0.00, C:0.23, G:0.28, T:0.49
Consensus pattern (12 bp):
GGTTTGGCCTCT
Found at i:102670117 original size:25 final size:25
Alignment explanation
Indices: 102670086--102670176 Score: 73
Period size: 25 Copynumber: 3.6 Consensus size: 25
102670076 TTTATTTAGA
102670086 TTTTATAATTTTTTTAAATTAAATT
1 TTTTATAATTTTTTTAAATTAAATT
102670111 TTTTAT-ATATTTTTTAAA--AAATT
1 TTTTATAAT-TTTTTTAAATTAAATT
** * *
102670134 AATTATATATTTTTTAAAATATATAAAT
1 TTTTATA-ATTTTTTTAAAT-TA-AATT
102670162 TTTTA-AATTTATTTT
1 TTTTATAATTT-TTTT
102670177 GATTTTTTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
23 9 0.18
24 10 0.20
25 17 0.33
26 4 0.08
27 5 0.10
28 6 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TTTTATAATTTTTTTAAATTAAATT
Found at i:102670132 original size:23 final size:23
Alignment explanation
Indices: 102670086--102670152 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 23
102670076 TTTATTTAGA
102670086 TTTTATA-ATTTTTTTAAATTAAATT
1 TTTTATATA-TTTTTTAAA--AAATT
102670111 TTTTATATATTTTTTAAAAAATT
1 TTTTATATATTTTTTAAAAAATT
**
102670134 AATTATATATTTTTTAAAA
1 TTTTATATATTTTTTAAAA
102670153 TATATAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 22 0.56
25 16 0.41
26 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTATATATTTTTTAAAAAATT
Found at i:102673278 original size:33 final size:32
Alignment explanation
Indices: 102673232--102673294 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
102673222 GCATCAACAG
* *
102673232 AGTAAGTCTGTCGGGATAGTAAACACAGAAAAA
1 AGTAAGTCCGTCGGGACAGTAAACAC-GAAAAA
102673265 AGTAAGTCCGTCGGGACAGTAAACACGAAA
1 AGTAAGTCCGTCGGGACAGTAAACACGAAA
102673295 CAGAGATGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16
Consensus pattern (32 bp):
AGTAAGTCCGTCGGGACAGTAAACACGAAAAA
Found at i:102676240 original size:20 final size:19
Alignment explanation
Indices: 102676191--102676243 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
102676181 TAATCTCTAA
102676191 ATTTTAATAA-AAA-TATT
1 ATTTTAATAATAAATTATT
* *
102676208 ATTTTATTTATAAATTATT
1 ATTTTAATAATAAATTATT
102676227 ATTTTAATAAATAAATT
1 ATTTTAAT-AATAAATT
102676244 TCATATTAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 8 0.28
18 3 0.10
19 11 0.38
20 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTTAATAATAAATTATT
Found at i:102678955 original size:34 final size:33
Alignment explanation
Indices: 102678912--102678975 Score: 101
Period size: 34 Copynumber: 1.9 Consensus size: 33
102678902 ACAACTTACT
*
102678912 TTGCAAGTTTTCAAACTCAAGAAATCAGTATCTA
1 TTGCAAGTTTTCAAACT-AAAAAATCAGTATCTA
*
102678946 TTGCAAGTTTTCAAACTAAAAAATTAGTAT
1 TTGCAAGTTTTCAAACTAAAAAATCAGTAT
102678976 GTAAAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 11 0.39
34 17 0.61
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TTGCAAGTTTTCAAACTAAAAAATCAGTATCTA
Found at i:102680270 original size:17 final size:18
Alignment explanation
Indices: 102680248--102680284 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
102680238 TTATAAAATT
102680248 ATCTTTTTAGATTTT-TA
1 ATCTTTTTAGATTTTATA
*
102680265 ATCTTTTTATATTTTATA
1 ATCTTTTTAGATTTTATA
102680283 AT
1 AT
102680285 TGTTAGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (18 bp):
ATCTTTTTAGATTTTATA
Found at i:102682039 original size:22 final size:21
Alignment explanation
Indices: 102681984--102682040 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
102681974 TTAAATTGAT
*
102681984 CATATTGAAATAAAAGAAACA
1 CATATTGAAATAAAAAAAACA
* *
102682005 CATATTGAGATAATAGAAAAACT
1 CATATTGAAATAA-A-AAAAACA
102682028 CA-ATTGAAATAAA
1 CATATTGAAATAAA
102682041 CCAAACTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 13 0.43
22 10 0.33
23 7 0.23
ACGTcount: A:0.58, C:0.09, G:0.11, T:0.23
Consensus pattern (21 bp):
CATATTGAAATAAAAAAAACA
Found at i:102684063 original size:15 final size:16
Alignment explanation
Indices: 102684043--102684080 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
102684033 TAATTTCATG
102684043 TTGAAACACATA-A-AT
1 TTGAAAC-CATATATAT
102684058 TTGAAACCATATATAT
1 TTGAAACCATATATAT
102684074 TTGAAAC
1 TTGAAAC
102684081 TTTTTCAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.19
15 8 0.38
16 9 0.43
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (16 bp):
TTGAAACCATATATAT
Found at i:102684215 original size:30 final size:29
Alignment explanation
Indices: 102684178--102684245 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
102684168 TATTTGTAGA
*
102684178 AATTTTTTTTA-TTTTTT-AACTTTCTTTAT
1 AATTTTTTTGATTTTTTTGAA-TTT-TTTAT
*
102684207 ATATTTTTTAGATTTTTTTGAATTTTTTAT
1 A-ATTTTTTTGATTTTTTTGAATTTTTTAT
102684237 AATTTTTTT
1 AATTTTTTT
102684246 AAAAATATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 8 0.24
30 14 0.42
31 9 0.27
32 2 0.06
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.72
Consensus pattern (29 bp):
AATTTTTTTGATTTTTTTGAATTTTTTAT
Found at i:102685842 original size:42 final size:43
Alignment explanation
Indices: 102685746--102685860 Score: 128
Period size: 42 Copynumber: 2.7 Consensus size: 43
102685736 CTTCGTTTTC
* * *
102685746 TCGATGCCATAG-TTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCT-AGCTATGGTCTTACACATATTCACATAA
* ** *
102685789 T-AATGTTATAGCCTAGCTATGGTCTTACACATATTCATAT-A
1 TCGATGCCATAGCCTAGCTATGGTCTTACACATATTCACATAA
*
102685830 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCTAGCTATGGTCTTACAC
102685861 GAATCACATA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
41 2 0.03
42 55 0.93
43 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (43 bp):
TCGATGCCATAGCCTAGCTATGGTCTTACACATATTCACATAA
Found at i:102685902 original size:46 final size:47
Alignment explanation
Indices: 102685832--102685950 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 47
102685822 TTCATATATC
* * *
102685832 GATGCCATAGCCCAGCTATGGTCTTACACGAATCA-CATATCTCAC-T-
1 GATGCCATATCCCAGATATGGTCTTACAC-AAT-AGCATATATCACATA
* * *
102685878 GATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACATA
1 GATGCCATATCCCAGATATGGTCTTACACAATAGCATATATCACATA
102685925 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATATCCCAGATATGGTCTTA
102685951 TACGGAAATC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 1 0.02
45 11 0.17
46 26 0.41
47 25 0.40
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGGTCTTACACAATAGCATATATCACATA
Found at i:102685937 original size:47 final size:46
Alignment explanation
Indices: 102685832--102685954 Score: 151
Period size: 47 Copynumber: 2.7 Consensus size: 46
102685822 TTCATATATC
* * * *
102685832 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCACT
* *
102685878 GATGTCATATCCCAGATATGGTCTTATAC-AGT-AGCATATATCACAT
1 GATGCCATATCCCAGATATGGTCTTATACGAATCA-CATATATCAC-T
102685924 AGATGCCATATCCCAGATATGGTCTTATACG
1 -GATGCCATATCCCAGATATGGTCTTATACG
102685955 GAAATCACTT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
44 1 0.02
45 11 0.17
46 26 0.39
47 28 0.42
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCACT
Found at i:102685971 original size:7 final size:7
Alignment explanation
Indices: 102685959--102685987 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
102685949 TATACGGAAA
102685959 TCACTTG
1 TCACTTG
102685966 TCACTTG
1 TCACTTG
102685973 TCACTTG
1 TCACTTG
102685980 TCACTTG
1 TCACTTG
102685987 T
1 T
102685988 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:102686134 original size:31 final size:31
Alignment explanation
Indices: 102685993--102686134 Score: 221
Period size: 31 Copynumber: 4.6 Consensus size: 31
102685983 CTTGTAGCCA
* *
102685993 AAGCTACCATTTTTCACCGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
* **
102686024 AAGCTACCACTTTTCACCGATCAGGTAGCCA
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
* *
102686055 AAACTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
102686086 AAGCTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
102686117 AAGCTACCACTTTTCACT
1 AAGCTACCACTTTTCACT
102686135 TGTCATTTGT
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTG
Found at i:102686216 original size:50 final size:51
Alignment explanation
Indices: 102686110--102686238 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
102686100 CACTGATCAG
* * *
102686110 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
102686161 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
102686211 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
102686239 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:102689170 original size:17 final size:17
Alignment explanation
Indices: 102689150--102689198 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
102689140 AGCTATCCTC
102689150 AAAAAATAGTTGTTCTA
1 AAAAAATAGTTGTTCTA
* * *
102689167 AAAATATAATTATTCTA
1 AAAAAATAGTTGTTCTA
*
102689184 AACAAA-AGTTGTTCT
1 AAAAAATAGTTGTTCT
102689199 TTCAGAAGAG
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (17 bp):
AAAAAATAGTTGTTCTA
Found at i:102691334 original size:3 final size:3
Alignment explanation
Indices: 102691321--102691366 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
102691311 ATATTTATGA
* *
102691321 ATT AAT ATT ATT A-T ATT ATT ATT ATGT ATT ATT ATT AAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT
102691366 A
1 A
102691367 ACTAATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:102691362 original size:19 final size:18
Alignment explanation
Indices: 102691329--102691364 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
102691319 GAATTAATAT
*
102691329 TATTATATTATTATTATG
1 TATTATATTAATATTATG
102691347 TATTATTATTAATATTAT
1 TATTA-TATTAATATTAT
102691365 TAACTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TATTATATTAATATTATG
Found at i:102692442 original size:23 final size:23
Alignment explanation
Indices: 102692416--102692505 Score: 126
Period size: 23 Copynumber: 3.9 Consensus size: 23
102692406 CTTAGTGTCG
* *
102692416 TTCTGGTGTATTTGGGTGGATTA
1 TTCTGGTGTGTTTGGTTGGATTA
* *
102692439 TTCTGGTGTGTTTGGATGGATCA
1 TTCTGGTGTGTTTGGTTGGATTA
*
102692462 TTCTGGCGTGTTTGGTTGGATTA
1 TTCTGGTGTGTTTGGTTGGATTA
*
102692485 TTTTGGTGTGTTTGGTTGGAT
1 TTCTGGTGTGTTTGGTTGGAT
102692506 CCGTGTATCC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.10, C:0.06, G:0.36, T:0.49
Consensus pattern (23 bp):
TTCTGGTGTGTTTGGTTGGATTA
Found at i:102693178 original size:36 final size:36
Alignment explanation
Indices: 102693131--102693203 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
102693121 ATAGTATCAT
*
102693131 GAATGTTGTTGATCAATTTGATAAGTCAATGTTTTA
1 GAATGTTGTTGATCAATTTGACAAGTCAATGTTTTA
102693167 GAATGTTGTTGATCAATTTGACAAGTCAATGTTTTA
1 GAATGTTGTTGATCAATTTGACAAGTCAATGTTTTA
102693203 G
1 G
102693204 GCATGATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (36 bp):
GAATGTTGTTGATCAATTTGACAAGTCAATGTTTTA
Found at i:102696554 original size:48 final size:49
Alignment explanation
Indices: 102696477--102696607 Score: 121
Period size: 48 Copynumber: 2.7 Consensus size: 49
102696467 TGGATATCCA
* *
102696477 GAGCTTCCCGATATATGGCT-ATC-TGGAGCTTCC-CATTAATGGCTCTT-C
1 GAGCTTACCGTTATATGGCTCA-CAT-GAGCTTCCTCATT-ATGGCTCTTAC
* * *
102696525 GAAGC-TACCTGTTAT-TGGCTCGCATGAGCTTCCTGATTATGGCTCTTAT
1 G-AGCTTACC-GTTATATGGCTCACATGAGCTTCCTCATTATGGCTCTTAC
*
102696574 GAGCTTTCCGTTATATGGCTCACATGAGCTTCCT
1 GAGCTTACCGTTATATGGCTCACATGAGCTTCCT
102696608 GTTATATGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
48 35 0.51
49 33 0.49
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.35
Consensus pattern (49 bp):
GAGCTTACCGTTATATGGCTCACATGAGCTTCCTCATTATGGCTCTTAC
Found at i:102696582 original size:25 final size:25
Alignment explanation
Indices: 102696527--102696618 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
102696517 GGCTCTTCGA
* *
102696527 AGCTACCTGTTAT-TGGCTCGCATG
1 AGCTTCCTGTTATATGGCTCACATG
* **
102696551 AGCTTCCTGAT-TATGGCTCTTATG
1 AGCTTCCTGTTATATGGCTCACATG
102696575 AGCTTTCC-GTTATATGGCTCACATG
1 AGC-TTCCTGTTATATGGCTCACATG
102696600 AGCTTCCTGTTATATGGCT
1 AGCTTCCTGTTATATGGCT
102696619 TGAGAGAGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 27 0.47
25 29 0.51
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (25 bp):
AGCTTCCTGTTATATGGCTCACATG
Found at i:102698807 original size:15 final size:15
Alignment explanation
Indices: 102698787--102698818 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
102698777 AATTTCACTA
*
102698787 TTATATCTTTTGTAT
1 TTATATCTTTTATAT
102698802 TTATATCTTTTATAT
1 TTATATCTTTTATAT
102698817 TT
1 TT
102698819 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.06, G:0.03, T:0.69
Consensus pattern (15 bp):
TTATATCTTTTATAT
Found at i:102700530 original size:68 final size:67
Alignment explanation
Indices: 102700433--102700630 Score: 182
Period size: 68 Copynumber: 3.0 Consensus size: 67
102700423 ATTTTAATAG
* * *
102700433 TTTAATATTAAATTTAATTTAGTACTTATCTTAATACTATTTTATTAATTTAATATTAAAGTGAT
1 TTTAATATTAAATTTAATTTAATATTTATCTTAATACTATTATATTAATTTAATATTAAAGTGAT
102700498 TA
66 TA
* * *
102700500 TCTTAATATTAAATTTAATTTAATGTTTATCTTGTAAATAAAC-ATTCTATT-ATTT--TAAT-A
1 T-TTAATATTAAATTTAATTTAATATTTATC-T-T-AAT--ACTATTATATTAATTTAATATTAA
102700560 A--GA-T-
60 AGTGATTA
* * *
102700564 TTT-ATATTAAATTTAATCTAATATTTATCTTGATATTTATTATATTAATTTAATATTAAAGTGA
1 TTTAATATTAAATTTAATTTAATATTTATCTTAATA-CTATTATATTAATTTAATATTAAAGTGA
102700628 TTA
65 TTA
102700631 ATTTTAATCA
Statistics
Matches: 104, Mismatches: 11, Indels: 32
0.71 0.07 0.22
Matches are distributed among these distances:
57 1 0.01
59 9 0.09
60 5 0.05
61 1 0.01
62 27 0.26
63 4 0.04
64 1 0.01
65 3 0.03
66 3 0.03
67 1 0.01
68 28 0.27
69 4 0.04
70 1 0.01
71 7 0.07
72 7 0.07
73 2 0.02
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (67 bp):
TTTAATATTAAATTTAATTTAATATTTATCTTAATACTATTATATTAATTTAATATTAAAGTGAT
TA
Found at i:102704520 original size:24 final size:25
Alignment explanation
Indices: 102704493--102704539 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102704483 AGAAGAGAGA
*
102704493 AAAATAAAG-GAGAAAAAGAAAAGG
1 AAAATAAAGAAAGAAAAAGAAAAGG
*
102704517 AAAATAAAGAAATAAAAAGAAAA
1 AAAATAAAGAAAGAAAAAGAAAA
102704540 AATTAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (25 bp):
AAAATAAAGAAAGAAAAAGAAAAGG
Found at i:102704905 original size:29 final size:31
Alignment explanation
Indices: 102704829--102704905 Score: 88
Period size: 29 Copynumber: 2.5 Consensus size: 31
102704819 ATTAACACTT
* *
102704829 AGTGACTAAAATGTCACAATACGATAATGTA
1 AGTGACTAAAATGTAACAATACGATAATATA
* *
102704860 AGTGACTAAAACT-TAACATTTC-A-AATATA
1 AGTGACTAAAA-TGTAACAATACGATAATATA
102704889 AGTGACTAAAATGTAAC
1 AGTGACTAAAATGTAAC
102704906 CTGAAGCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 1 0.03
29 20 0.50
30 1 0.03
31 17 0.43
32 1 0.03
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (31 bp):
AGTGACTAAAATGTAACAATACGATAATATA
Found at i:102706145 original size:31 final size:31
Alignment explanation
Indices: 102706105--102706172 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
102706095 TTAACAACCT
102706105 AGTGACTTAAATAAAAACTTTTGAATAGTTC
1 AGTGACTTAAATAAAAACTTTTGAATAGTTC
* *
102706136 AGTGGCTTAAATGAAAACTTTTGAATAGTTC
1 AGTGACTTAAATAAAAACTTTTGAATAGTTC
102706167 AGTGAC
1 AGTGAC
102706173 CATTTTGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (31 bp):
AGTGACTTAAATAAAAACTTTTGAATAGTTC
Found at i:102707344 original size:17 final size:17
Alignment explanation
Indices: 102707321--102707359 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
102707311 AAATTGGGGC
*
102707321 GTGTGGGCTACATGGGT
1 GTGTGGGCCACATGGGT
*
102707338 TTGTGGGCCACATGGGT
1 GTGTGGGCCACATGGGT
102707355 GTGTG
1 GTGTG
102707360 AGCCCATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.10, C:0.13, G:0.46, T:0.31
Consensus pattern (17 bp):
GTGTGGGCCACATGGGT
Found at i:102713720 original size:119 final size:120
Alignment explanation
Indices: 102713510--102713806 Score: 492
Period size: 119 Copynumber: 2.5 Consensus size: 120
102713500 AATTATTTTA
* * * *
102713510 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTTTCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTTTATTT
*
102713574 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
102713630 AATTTTATTAAATTATATATTTTAATTATAATATA-TTAATAATAATTATGTT-ACTTTATATTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTT-TATTT
102713693 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
102713749 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
102713807 ATGATTAAAT
Statistics
Matches: 165, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
118 4 0.02
119 107 0.65
120 50 0.30
121 2 0.01
122 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTTTATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:102713784 original size:16 final size:16
Alignment explanation
Indices: 102713763--102713804 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
102713753 TTATTAAATT
*
102713763 ATATATTTTAATTATA
1 ATATATTTTAATAATA
102713779 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
102713794 AT-TATGTTTAA
1 ATATAT-TTTAA
102713805 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:102713789 original size:15 final size:15
Alignment explanation
Indices: 102713754--102713795 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
102713744 TTAAGAATTT
*
102713754 TATTAAATTAT-ATA
1 TATTTAATTATAATA
102713768 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
102713782 TATTTAATAATAAT
1 TATTTAATTATAAT
102713796 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:102713945 original size:157 final size:157
Alignment explanation
Indices: 102713738--102714054 Score: 557
Period size: 157 Copynumber: 2.0 Consensus size: 157
102713728 ATAAGAATAT
*
102713738 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* * *
102713803 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
102713868 TAATAATTTACCAAAACAAATTTT-TGC
131 TAATAATTTACCAAAAC-AATTTTATGC
102713895 TAATTA-TAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATT-TTAATTAAAATATATTTAATAATAATTATGTT
102713959 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
65 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
*
102714024 ATAATCATTTACCAAAACAATTTTATGC
130 ATAATAATTTACCAAAACAATTTTATGC
102714052 TAA
1 TAA
102714055 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
156 31 0.20
157 122 0.80
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAATTTTATGC
Found at i:102714171 original size:44 final size:45
Alignment explanation
Indices: 102714106--102714196 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
102714096 ACCTCTATTC
* * *
102714106 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
102714150 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
102714195 CA
1 CA
102714197 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:102714198 original size:16 final size:16
Alignment explanation
Indices: 102714177--102714245 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
102714167 GATTAGCTAT
102714177 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102714193 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
102714210 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102714226 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102714242 TACA
1 TACA
102714246 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:102714219 original size:33 final size:32
Alignment explanation
Indices: 102714177--102714245 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
102714167 GATTAGCTAT
102714177 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
102714210 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
102714242 TACA
1 TACA
102714246 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:102714664 original size:26 final size:29
Alignment explanation
Indices: 102714628--102714687 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
102714618 TATATTATAT
* *
102714628 TATATTATTTTA-ATATTTAATATTTTTA
1 TATATTATTTTATATATTGAAAATTTTTA
*
102714656 TATATT-TTTTATTTATTGAAAATTTTTA
1 TATATTATTTTATATATTGAAAATTTTTA
102714684 TATA
1 TATA
102714688 GTCATCTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (29 bp):
TATATTATTTTATATATTGAAAATTTTTA
Found at i:102718739 original size:21 final size:21
Alignment explanation
Indices: 102718689--102718756 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
102718679 GGGTTTCTGA
*
102718689 TTTGAGGTTT-GTGTTCA-TGG
1 TTTGAGGTTTAGAGTTCAGT-G
102718709 TTTG-GGTTTAGAGTTCAGTG
1 TTTGAGGTTTAGAGTTCAGTG
*
102718729 TTTGAGGTTTA-AGATTTAGTG
1 TTTGAGGTTTAGAG-TTCAGTG
*
102718750 TTCGAGG
1 TTTGAGG
102718757 CTTAATGTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 5 0.12
20 17 0.41
21 19 0.46
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (21 bp):
TTTGAGGTTTAGAGTTCAGTG
Found at i:102720240 original size:6 final size:6
Alignment explanation
Indices: 102720229--102720273 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
102720219 AAGAAATTAA
102720229 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAA
102720274 AGAGGTACCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATAT
Found at i:102728376 original size:23 final size:24
Alignment explanation
Indices: 102728346--102728391 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
102728336 ATAAAGAAAC
102728346 ATGACAAATAATTA-ACATGCCAA
1 ATGACAAATAATTAGACATGCCAA
**
102728369 ATGACAAATTCTTAGACATGCCA
1 ATGACAAATAATTAGACATGCCA
102728392 CATAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.24
Consensus pattern (24 bp):
ATGACAAATAATTAGACATGCCAA
Found at i:102728461 original size:6 final size:6
Alignment explanation
Indices: 102728450--102728475 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
102728440 ATATATTAGA
102728450 TTTAAT TTTAAT TTTAAT TTTAAT TT
1 TTTAAT TTTAAT TTTAAT TTTAAT TT
102728476 CAAATTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTAAT
Found at i:102731243 original size:72 final size:72
Alignment explanation
Indices: 102731126--102731309 Score: 359
Period size: 72 Copynumber: 2.6 Consensus size: 72
102731116 ACAACTTGAC
*
102731126 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
102731191 ACTAACA
66 ACTAACA
102731198 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
102731263 ACTAACA
66 ACTAACA
102731270 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
102731310 AATAATAATA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 111 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:102731318 original size:3 final size:3
Alignment explanation
Indices: 102731310--102731353 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
102731300 ATTACATCCA
102731310 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
102731354 AACATGTGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:102735688 original size:72 final size:72
Alignment explanation
Indices: 102735571--102735754 Score: 350
Period size: 72 Copynumber: 2.6 Consensus size: 72
102735561 ACAACTTGAC
* *
102735571 AACTTAGTTGGAATACAACTAAGTTTCATTATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
102735636 ACTAACA
66 ACTAACA
102735643 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
102735708 ACTAACA
66 ACTAACA
102735715 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
102735755 AATAATAATA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 110 1.00
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:102735763 original size:3 final size:3
Alignment explanation
Indices: 102735755--102735792 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
102735745 ATTACATCCA
102735755 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
102735793 AACATGTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:102738739 original size:22 final size:22
Alignment explanation
Indices: 102738714--102738779 Score: 53
Period size: 23 Copynumber: 2.9 Consensus size: 22
102738704 TTTTTGGAAT
102738714 TAAATTATAATTTTTATAATAA
1 TAAATTATAATTTTTATAATAA
* * **
102738736 TAAAAATGTAATTTTATCATTTTAA
1 T-AAATTATAATTTT-T-ATAATAA
*
102738761 TAATTTAT-ATTTTTATAAT
1 TAAATTATAATTTTTATAAT
102738780 TTTTAAAATA
Statistics
Matches: 32, Mismatches: 9, Indels: 7
0.67 0.19 0.15
Matches are distributed among these distances:
21 3 0.09
22 2 0.06
23 16 0.50
24 5 0.16
25 6 0.19
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
TAAATTATAATTTTTATAATAA
Found at i:102738778 original size:15 final size:16
Alignment explanation
Indices: 102738748--102738781 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
102738738 AAAATGTAAT
102738748 TTTATCATTTTAATAA
1 TTTATCATTTTAATAA
*
102738764 TTTAT-ATTTTTATAA
1 TTTATCATTTTAATAA
102738779 TTT
1 TTT
102738782 TTAAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATCATTTTAATAA
Found at i:102745305 original size:36 final size:36
Alignment explanation
Indices: 102745234--102745305 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
102745224 TCAGAAAAGC
*
102745234 TATTTTTACATATATTAATAAATTTATATTTTAAAT
1 TATTTTTACATATATTAATAAATTTATATTATAAAT
102745270 TATTTTTACATATATTACA-ATAATTTAT-TTATAAAT
1 TATTTTTACATATATTA-ATA-AATTTATATTATAAAT
102745306 AAATAAATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
36 25 0.76
37 8 0.24
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (36 bp):
TATTTTTACATATATTAATAAATTTATATTATAAAT
Found at i:102748618 original size:34 final size:34
Alignment explanation
Indices: 102748578--102748685 Score: 123
Period size: 40 Copynumber: 3.1 Consensus size: 34
102748568 GACCTTGCGA
102748578 AGAGGAATGAGATTTGCCTGAGAAAGAGAGAAAG
1 AGAGGAATGAGATTTGCCTGAGAAAGAGAGAAAG
102748612 AGAGGAATGAGATTGGCCTTTGCCTGAGAAAGAGAGAAAG
1 AGAGGAATGAGA------TTTGCCTGAGAAAGAGAGAAAG
* *
102748652 GGAGGAATGAGATTTG-C--AGAAAGAGAGAGAG
1 AGAGGAATGAGATTTGCCTGAGAAAGAGAGAAAG
102748683 AGA
1 AGA
102748686 AAGAAGATGA
Statistics
Matches: 65, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
31 15 0.23
33 1 0.02
34 16 0.25
40 33 0.51
ACGTcount: A:0.42, C:0.06, G:0.37, T:0.15
Consensus pattern (34 bp):
AGAGGAATGAGATTTGCCTGAGAAAGAGAGAAAG
Found at i:102748645 original size:40 final size:40
Alignment explanation
Indices: 102748590--102748665 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
102748580 AGGAATGAGA
102748590 TTTGCCTGAGAAAGAGAGAAAGAGAGGAATGAGATTGGCC
1 TTTGCCTGAGAAAGAGAGAAAGAGAGGAATGAGATTGGCC
*
102748630 TTTGCCTGAGAAAGAGAGAAAGGGAGGAATGAGATT
1 TTTGCCTGAGAAAGAGAGAAAGAGAGGAATGAGATT
102748666 TGCAGAAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.38, C:0.08, G:0.36, T:0.18
Consensus pattern (40 bp):
TTTGCCTGAGAAAGAGAGAAAGAGAGGAATGAGATTGGCC
Found at i:102750122 original size:52 final size:52
Alignment explanation
Indices: 102750062--102750167 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
102750052 TATTATTGAA
102750062 AATAATTTTTAATGTTTTTTTTAAAAGTTGAATTGCAAGTGGTAAATCTTTT
1 AATAATTTTTAATGTTTTTTTTAAAAGTTGAATTGCAAGTGGTAAATCTTTT
*
102750114 AATAATTTTTAATGTTTTTTTTAAAAGTTGAATTGCAAGTGGTAAATTTTTT
1 AATAATTTTTAATGTTTTTTTTAAAAGTTGAATTGCAAGTGGTAAATCTTTT
102750166 AA
1 AA
102750168 GGGATATAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.34, C:0.03, G:0.13, T:0.50
Consensus pattern (52 bp):
AATAATTTTTAATGTTTTTTTTAAAAGTTGAATTGCAAGTGGTAAATCTTTT
Found at i:102751276 original size:30 final size:30
Alignment explanation
Indices: 102751240--102751302 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
102751230 ACTTATTTTA
102751240 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
102751270 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
102751300 TTG
1 TTG
102751303 CTTCTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:102753052 original size:18 final size:19
Alignment explanation
Indices: 102753024--102753083 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 19
102753014 TTATATATAT
*
102753024 ATATT-TAAATTTTAAAAG
1 ATATTATAAATTTTAAAAA
102753042 A-ATTATAAATTTGTAAAAA
1 ATATTATAAATTT-TAAAAA
*
102753061 ATATTA-AAATTTTTAAAA
1 ATATTATAAATTTTAAAAA
*
102753079 TTATT
1 ATATT
102753084 GAATAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
17 3 0.08
18 17 0.47
19 12 0.33
20 4 0.11
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
ATATTATAAATTTTAAAAA
Found at i:102753107 original size:24 final size:22
Alignment explanation
Indices: 102753076--102753120 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
102753066 AAAATTTTTA
*
102753076 AAATTATTGAATAAAATTCAAAAT
1 AAATTATT-AAAAAAATT-AAAAT
102753100 AAATTATTAAAAAAATTAAAA
1 AAATTATTAAAAAAATTAAAA
102753121 GTTTAAGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 8 0.40
24 8 0.40
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
AAATTATTAAAAAAATTAAAAT
Found at i:102760201 original size:30 final size:32
Alignment explanation
Indices: 102760147--102760210 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 32
102760137 TAGTAAATAT
* *
102760147 AAAATTGTACTTTAATTTTCTTAAAAATGATA
1 AAAATTGTAATTTAATTCTCTTAAAAATGATA
*
102760179 AAAATT-TAATTTAA-TCTCTTAAAAATTATA
1 AAAATTGTAATTTAATTCTCTTAAAAATGATA
102760209 AA
1 AA
102760211 GATATAGACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 16 0.55
31 7 0.24
32 6 0.21
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (32 bp):
AAAATTGTAATTTAATTCTCTTAAAAATGATA
Found at i:102770482 original size:4 final size:4
Alignment explanation
Indices: 102770473--102770505 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
102770463 CAGAGGTATC
102770473 CATA CATA CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA CATA CATA C
102770506 TTTCTGATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:102775800 original size:38 final size:38
Alignment explanation
Indices: 102775744--102775819 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
102775734 ACTCACCACC
* *
102775744 ATCCTCACTTGTTTCATATTTTGTAAGGATCATAACAT
1 ATCCTCACTTGTTCCATATTTTATAAGGATCATAACAT
102775782 ATCCTCACTTGTTCCATATTTTATAAGGATCATAACAT
1 ATCCTCACTTGTTCCATATTTTATAAGGATCATAACAT
102775820 GAAAAATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (38 bp):
ATCCTCACTTGTTCCATATTTTATAAGGATCATAACAT
Found at i:102783654 original size:24 final size:24
Alignment explanation
Indices: 102783622--102783691 Score: 106
Period size: 24 Copynumber: 2.9 Consensus size: 24
102783612 TTAGGATTAG
102783622 GGTTTAGTGGTTTAAGATTTTTAA
1 GGTTTAGTGGTTTAAGATTTTTAA
102783646 GGTTTAGTGGTTTAAGATTTTTAA
1 GGTTTAGTGGTTTAAGATTTTTAA
* *
102783670 GATTTAG-GGTTTTAGTATTTTT
1 GGTTTAGTGGTTTAAG-ATTTTT
102783692 TAAGAGAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
23 7 0.16
24 36 0.84
ACGTcount: A:0.23, C:0.00, G:0.24, T:0.53
Consensus pattern (24 bp):
GGTTTAGTGGTTTAAGATTTTTAA
Found at i:102783893 original size:153 final size:155
Alignment explanation
Indices: 102783673--102784022 Score: 503
Period size: 153 Copynumber: 2.3 Consensus size: 155
102783663 TTTTTAAGAT
* * *
102783673 TTAGGGTTTTAGTATTTTTTAAGAGAAAAATTAGTTTAATTAGAGTTAAGGGTTAATTAATTAAA
1 TTAGGGTTTTAGTATTTTTTAAGGGAAAAATTAATTTAATTAGAGTTAAGAGTTAATTAATTAAA
102783738 TTAACTATGAAATTAAAAAAAT-AATTAAAGTAGGGTTTAGGGTTTTTTAAGGTT-AGGTTTTTT
66 TTAACTATGAAATT-AAAAAATCAATTAAAGTAGGGTTTAGGG-TTTTTAAGGTTAAGG-TTTTT
* * *
102783801 ATTATTTTAGGATTAGGG-TTTAGTGGG
128 ATTATTTCAGGATTAGGGTTTTAATAGG
* * *
102783828 TTAGGGTTTTA-T-TATTTTAAGGGAAAAGTTAATTTAATTAGAGTTGAGAGTTAATTAATTAAA
1 TTAGGGTTTTAGTATTTTTTAAGGGAAAAATTAATTTAATTAGAGTTAAGAGTTAATTAATTAAA
*
102783891 TTAACTATGAAATTAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTAAGGTTAAGGTTTTTATT
66 TTAACTATGAAATTAAAAAATCAATTAAAGTAGGGTTTAGGGTTTTTAAGGTTAAGGTTTTTATT
* * * *
102783956 GTTTCGGGGTTAGGGTTTTAATAGT
131 ATTTCAGGATTAGGGTTTTAATAGG
*
102783981 TTAGGGTTTTAGTATTTTTTAAGGGAAAATTTAATTTAATTA
1 TTAGGGTTTTAGTATTTTTTAAGGGAAAAATTAATTTAATTA
102784023 AAAACTCTAA
Statistics
Matches: 174, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
152 37 0.21
153 98 0.56
154 2 0.01
155 37 0.21
ACGTcount: A:0.34, C:0.01, G:0.21, T:0.44
Consensus pattern (155 bp):
TTAGGGTTTTAGTATTTTTTAAGGGAAAAATTAATTTAATTAGAGTTAAGAGTTAATTAATTAAA
TTAACTATGAAATTAAAAAATCAATTAAAGTAGGGTTTAGGGTTTTTAAGGTTAAGGTTTTTATT
ATTTCAGGATTAGGGTTTTAATAGG
Found at i:102783987 original size:22 final size:22
Alignment explanation
Indices: 102783935--102783988 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
102783925 GTTTAGGGTT
* * *
102783935 TTTAAGGTTAAGGTTTTTATTG
1 TTTAGGGTTAAGGTTTTAATAG
* *
102783957 TTTCGGGGTTAGGGTTTTAATAG
1 TTT-AGGGTTAAGGTTTTAATAG
102783980 TTTAGGGTT
1 TTTAGGGTT
102783989 TTAGTATTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.19, C:0.02, G:0.30, T:0.50
Consensus pattern (22 bp):
TTTAGGGTTAAGGTTTTAATAG
Found at i:102784042 original size:17 final size:17
Alignment explanation
Indices: 102784022--102784055 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
102784012 TAATTTAATT
*
102784022 AAAAACTCT-AACCCTA
1 AAAAACCCTAAACCCTA
102784038 AAAAACCCTAAACCCTA
1 AAAAACCCTAAACCCTA
102784055 A
1 A
102784056 TTTAATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAAACCCTAAACCCTA
Found at i:102785981 original size:31 final size:31
Alignment explanation
Indices: 102785943--102786002 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
102785933 TTTAATTTGA
* *
102785943 TCAATTTTAGTCATTGTACTTTTTGAATTGG
1 TCAATTTTAGTCACTATACTTTTTGAATTGG
*
102785974 TCAATTTTAGTCCCTATACTTTTTGAATT
1 TCAATTTTAGTCACTATACTTTTTGAATT
102786003 CTAAAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.23, C:0.13, G:0.12, T:0.52
Consensus pattern (31 bp):
TCAATTTTAGTCACTATACTTTTTGAATTGG
Found at i:102786011 original size:31 final size:31
Alignment explanation
Indices: 102785945--102786012 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
102785935 TAATTTGATC
* * * *
102785945 AATTTTAGTCATTGTACTTTTTGAATTGGTC
1 AATTTTAGTCACTATACTTTTTGAATTGCTA
*
102785976 AATTTTAGTCCCTATACTTTTTGAATT-CTAA
1 AATTTTAGTCACTATACTTTTTGAATTGCT-A
102786007 AATTTT
1 AATTTT
102786013 GGTCTTGACC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.51
Consensus pattern (31 bp):
AATTTTAGTCACTATACTTTTTGAATTGCTA
Found at i:102786300 original size:62 final size:62
Alignment explanation
Indices: 102786223--102786354 Score: 160
Period size: 62 Copynumber: 2.1 Consensus size: 62
102786213 AAAGTTTGAA
* **
102786223 GAAAGTTTTCAAAAA-TTTGAGGGGGCCTAATTAATTTTTTCTAAAAACTTCAA-GAGAGAAAT
1 GAAAATTTTCAAAAATTTTGA-GGGGCCTAATTAAAATTTTCTAAAAACTTCAATG-GAGAAAT
* * * *
102786285 GAAAATTTTCGAAAATTTTGATGGGCTTAATTAAAATTTTCTAAAAATTTCAATGGAGAAAT
1 GAAAATTTTCAAAAATTTTGAGGGGCCTAATTAAAATTTTCTAAAAACTTCAATGGAGAAAT
*
102786347 CAAAATTT
1 GAAAATTT
102786355 CCCAATTTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 54 0.90
63 6 0.10
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (62 bp):
GAAAATTTTCAAAAATTTTGAGGGGCCTAATTAAAATTTTCTAAAAACTTCAATGGAGAAAT
Found at i:102786352 original size:31 final size:31
Alignment explanation
Indices: 102786259--102786354 Score: 81
Period size: 31 Copynumber: 3.1 Consensus size: 31
102786249 CTAATTAATT
* *
102786259 TTTTCTAAAAACTTCAA-GAGAGAAATGAAAA
1 TTTTCTAAAAATTTCAATG-GAGAAATCAAAA
* ** * *
102786290 TTTTC-GAAAATTTTGATGG-GCTTAATTAAAA
1 TTTTCTAAAAATTTCAATGGAG--AAATCAAAA
102786321 TTTTCTAAAAATTTCAATGGAGAAATCAAAA
1 TTTTCTAAAAATTTCAATGGAGAAATCAAAA
102786352 TTT
1 TTT
102786355 CCCAATTTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
29 1 0.02
30 8 0.16
31 28 0.57
32 11 0.22
33 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.35
Consensus pattern (31 bp):
TTTTCTAAAAATTTCAATGGAGAAATCAAAA
Found at i:102787727 original size:9 final size:9
Alignment explanation
Indices: 102787715--102787775 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
102787705 CAATATGTTC
102787715 ATTTAATTA
1 ATTTAATTA
*
102787724 ATTT-ATAAA
1 ATTTAAT-TA
102787733 ATTTAATTA
1 ATTTAATTA
* *
102787742 ATTAAATTT
1 ATTTAATTA
102787751 ATTTAATTAAA
1 ATTTAATT--A
*
102787762 AATTAATTA
1 ATTTAATTA
102787771 ATTTA
1 ATTTA
102787776 CTTGGTTGGA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
8 2 0.05
9 29 0.73
10 2 0.05
11 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
ATTTAATTA
Found at i:102787736 original size:18 final size:17
Alignment explanation
Indices: 102787715--102787773 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 17
102787705 CAATATGTTC
102787715 ATTTAATTAATTTATAAA
1 ATTTAATTAA-TTATAAA
102787733 ATTTAATTAA-T-T-AA
1 ATTTAATTAATTATAAA
*
102787747 ATTTATTTAATTA-AAA
1 ATTTAATTAATTATAAA
102787763 A-TTAATTAATT
1 ATTTAATTAATT
102787774 TACTTGGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 11 0.31
15 11 0.31
16 4 0.11
18 10 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATTAATTATAAA
Found at i:102788200 original size:15 final size:15
Alignment explanation
Indices: 102788180--102788209 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
102788170 AAATTTTAAT
*
102788180 TTTTTATATTTTATA
1 TTTTTATAATTTATA
102788195 TTTTTATAATTTATA
1 TTTTTATAATTTATA
102788210 AAGGATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:102791064 original size:14 final size:14
Alignment explanation
Indices: 102791027--102791065 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
102791017 TCAGCGAACA
102791027 AAATATATAAATAT
1 AAATATATAAATAT
*
102791041 AAATAAATAAATAT
1 AAATATATAAATAT
**
102791055 TTATATATAAA
1 AAATATATAAA
102791066 GTTTTACAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATATATAAATAT
Found at i:102808723 original size:5 final size:5
Alignment explanation
Indices: 102808711--102808744 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
102808701 GGGAATTTAG
* *
102808711 ATAGA AGAGA AGAGA ATAGA ATAGA ATAGA ATAG
1 ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAG
102808745 GATTAGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (5 bp):
ATAGA
Found at i:102815128 original size:6 final size:6
Alignment explanation
Indices: 102815119--102815148 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
102815109 GCCCTTCCCC
102815119 TTCCTT TTCCTT TTCCTT TTCCTT TTCCTT
1 TTCCTT TTCCTT TTCCTT TTCCTT TTCCTT
102815149 CCATCACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (6 bp):
TTCCTT
Found at i:102815134 original size:18 final size:18
Alignment explanation
Indices: 102815113--102815148 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
102815103 GCCCTTGCCC
102815113 TTCCCCTTCCTTTTCCTT
1 TTCCCCTTCCTTTTCCTT
**
102815131 TTCCTTTTCCTTTTCCTT
1 TTCCCCTTCCTTTTCCTT
102815149 CCATCACTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (18 bp):
TTCCCCTTCCTTTTCCTT
Found at i:102815740 original size:12 final size:12
Alignment explanation
Indices: 102815723--102815757 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
102815713 TTTCTTGAAC
*
102815723 TTTTAAAGATTT
1 TTTTAAAGAATT
102815735 TTTTAAAGAATT
1 TTTTAAAGAATT
102815747 TTTTAAA-AATT
1 TTTTAAAGAATT
102815758 ATTGTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (12 bp):
TTTTAAAGAATT
Found at i:102816600 original size:305 final size:306
Alignment explanation
Indices: 102816035--102816613 Score: 772
Period size: 305 Copynumber: 1.9 Consensus size: 306
102816025 TGTATATCAT
* * * *
102816035 ATACTAGAAACTCTATCACACGCGTATGCGTGTGGAAACCATATATTTAGAACACAAATTTATGT
1 ATACTAGAAACTCCATCACACGAGTATGCATGTGGAAACCATATAGTTAGAACACAAATTTATGT
* * *
102816100 TTAAAAAAAACAACAATAAGAAATGAAATGTGTTATTTGAAACTAATTAATAATCACATGAAATA
66 TTAAAAAAAACAACAATAAGAAATGAAATGTATGATTTGAAACTAATTAATAATAACATGAAATA
* * * * * *
102816165 TGTACAATATTAAAATAAAAAAAATTGTTTTAAATTGTAAGTAAAACGATATTTAAATACATGAA
131 TGTACAATACTAAAAT-AAAAAAATAGTATTAAATTGTAAATAAAACGATATTTAAACACATAAA
* *
102816230 TACATCAAATTAAGAGGAGTAAATGAATATAATTATTTATCATGGTATTGTCATCAATTTTAAGT
195 TACATCAAATTAAAAGGAGTAAATGAATACAATTATTTATCATGGTATTGTCATCAATTTTAAGT
102816295 TGGCGTCGAGTTAACTTGTAACATCATCTCAATCAACAACTTTATTA
260 TGGCGTCGAGTTAACTTGTAACATCATCTCAATCAACAACTTTATTA
* * * * * *
102816342 ATACTAGAATCTCCATCATATGAGTATGCATGTGGAAATCATGTAGTTA-AAGCACAAATTTGTG
1 ATACTAGAAACTCCATCACACGAGTATGCATGTGGAAACCATATAGTTAGAA-CACAAATTTATG
* * *
102816406 TTTAATAATAACATACAATAA-ATAATGAAATGTATGATTTGGAACTAATTAATAATAACATGAA
65 TTTAAAAAAAACA-ACAATAAGA-AATGAAATGTATGATTTGAAACTAATTAATAATAACATGAA
** *
102816470 ATATGTATGATACTAAAAT-AAAAAATAG-ATTAAATTGTAAATAAAA-GTATTTTTAAACACAT
128 ATATGTACAATACTAAAATAAAAAAATAGTATTAAATTGTAAATAAAACG-ATATTTAAACACAT
* * * ** *
102816532 AAATACTTTAGATTAAAATTATTAAATGAATACAATTATTTATCATGGTATTGTCATCAATTTTA
192 AAATACATCAAATTAAAAGGAGTAAATGAATACAATTATTTATCATGGTATTGTCATCAATTTTA
*
102816597 AGTTGGTGTCGAGTTAA
257 AGTTGGCGTCGAGTTAA
102816614 TTTATGGTAC
Statistics
Matches: 234, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
304 1 0.00
305 100 0.43
306 10 0.04
307 63 0.27
308 60 0.26
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (306 bp):
ATACTAGAAACTCCATCACACGAGTATGCATGTGGAAACCATATAGTTAGAACACAAATTTATGT
TTAAAAAAAACAACAATAAGAAATGAAATGTATGATTTGAAACTAATTAATAATAACATGAAATA
TGTACAATACTAAAATAAAAAAATAGTATTAAATTGTAAATAAAACGATATTTAAACACATAAAT
ACATCAAATTAAAAGGAGTAAATGAATACAATTATTTATCATGGTATTGTCATCAATTTTAAGTT
GGCGTCGAGTTAACTTGTAACATCATCTCAATCAACAACTTTATTA
Found at i:102819939 original size:28 final size:28
Alignment explanation
Indices: 102819891--102819948 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
102819881 ATAACAATAA
* *
102819891 TATGATATAAAAGCATATATATTTATAT
1 TATGATATAAAAGCACATATATGTATAT
*
102819919 TATGATATTAAAAG-ACGTATATGTATAT
1 TATGATA-TAAAAGCACATATATGTATAT
102819947 TA
1 TA
102819949 GGAATAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.41
Consensus pattern (28 bp):
TATGATATAAAAGCACATATATGTATAT
Found at i:102819959 original size:3 final size:3
Alignment explanation
Indices: 102819951--102820002 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
102819941 GTATATTAGG
102819951 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
102819999 AAT A
1 AAT A
102820003 TAGATATGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:102820501 original size:17 final size:17
Alignment explanation
Indices: 102820475--102820509 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
102820465 GATAATAGTG
102820475 AGCCATTAATAAAGATAC
1 AGCCATTAATAAA-ATAC
102820493 AGCCA-TAATAAAATAC
1 AGCCATTAATAAAATAC
102820509 A
1 A
102820510 ATAAATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 7 0.41
18 5 0.29
ACGTcount: A:0.54, C:0.17, G:0.09, T:0.20
Consensus pattern (17 bp):
AGCCATTAATAAAATAC
Found at i:102840741 original size:28 final size:28
Alignment explanation
Indices: 102840693--102840747 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
102840683 ATAACAATAA
* *
102840693 TATGATATAAAAGCATATATATTTATAT
1 TATGATATAAAAGCACATATATGTATAT
*
102840721 TATGATATTAAAAG-ACGTATATGTATA
1 TATGATA-TAAAAGCACATATATGTATA
102840748 ATAATAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (28 bp):
TATGATATAAAAGCACATATATGTATAT
Found at i:102840753 original size:3 final size:3
Alignment explanation
Indices: 102840745--102840806 Score: 117
Period size: 3 Copynumber: 21.0 Consensus size: 3
102840735 ACGTATATGT
102840745 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
102840792 ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA
102840807 TATAGATATG
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 56 0.97
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:102840829 original size:32 final size:32
Alignment explanation
Indices: 102840745--102840808 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
102840735 ACGTATATGT
102840745 ATAATAATAATAATAATAATAATAATAATATA
1 ATAATAATAATAATAATAATAATAATAATATA
102840777 ATAATAATAATAATAATAATAATAATAATATA
1 ATAATAATAATAATAATAATAATAATAATATA
102840809 TAGATATGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (32 bp):
ATAATAATAATAATAATAATAATAATAATATA
Found at i:102842474 original size:29 final size:29
Alignment explanation
Indices: 102842425--102842496 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 29
102842415 TTTAATATAT
* *
102842425 TATTATATT-ATTATATAATAAAGATATTT
1 TATTGTATTAATTATATAAT-AAGATATTA
* *
102842454 TA-TGTTTTAATTATA-ATATAATATATTA
1 TATTGTATTAATTATATA-ATAAGATATTA
102842482 TATTGTATTAATTAT
1 TATTGTATTAATTAT
102842497 TTTATTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
28 14 0.40
29 21 0.60
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (29 bp):
TATTGTATTAATTATATAATAAGATATTA
Done.