Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 312 of 344
Found at i:102843146 original size:47 final size:47
Alignment explanation
Indices: 102843095--102843195 Score: 132
Period size: 47 Copynumber: 2.1 Consensus size: 47
102843085 CTATAAGTGT
** * *
102843095 TGTACTGTTACTG-TTACTTCGGTTTAATCCGATAAGGTACTAAGTAC
1 TGTACTGTTACTGTTTACTTCGG-CAAAGCCGATAAGGCACTAAGTAC
* *
102843142 TGTACTGTTACTGTTTACTTCGGCAAAGCCGATGAGGCACTAAGTGC
1 TGTACTGTTACTGTTTACTTCGGCAAAGCCGATAAGGCACTAAGTAC
102843189 TGTACTG
1 TGTACTG
102843196 GTGTGTTGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 38 0.81
48 9 0.19
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.35
Consensus pattern (47 bp):
TGTACTGTTACTGTTTACTTCGGCAAAGCCGATAAGGCACTAAGTAC
Found at i:102849037 original size:19 final size:18
Alignment explanation
Indices: 102849013--102849076 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 18
102849003 GAATAAAGGG
102849013 TAAAAGTTGAATTATAGAT
1 TAAAAG-TGAATTATAGAT
** * *
102849032 TAAAAGAAAATAAAAAGGAT
1 TAAAAGTGAAT-TATA-GAT
102849052 TAAAAGGTGAATTATAGAT
1 TAAAA-GTGAATTATAGAT
102849071 TAAAAG
1 TAAAAG
102849077 AAAATAAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 7
0.69 0.16 0.14
Matches are distributed among these distances:
18 4 0.12
19 16 0.47
20 10 0.29
21 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.27
Consensus pattern (18 bp):
TAAAAGTGAATTATAGAT
Found at i:102849054 original size:20 final size:20
Alignment explanation
Indices: 102849029--102849096 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
102849019 TTGAATTATA
102849029 GATTAAAAGAAAATAAAAAG
1 GATTAAAAGAAAATAAAAAG
** * *
102849049 GATTAAAAGGTGAAT-TATA-
1 GATTAAAA-GAAAATAAAAAG
102849068 GATTAAAAGAAAATAAAAAG
1 GATTAAAAGAAAATAAAAAG
*
102849088 GACTAAAAG
1 GATTAAAAG
102849097 GACAACTATA
Statistics
Matches: 36, Mismatches: 9, Indels: 6
0.71 0.18 0.12
Matches are distributed among these distances:
18 4 0.11
19 10 0.28
20 18 0.50
21 4 0.11
ACGTcount: A:0.62, C:0.01, G:0.18, T:0.19
Consensus pattern (20 bp):
GATTAAAAGAAAATAAAAAG
Found at i:102849057 original size:39 final size:39
Alignment explanation
Indices: 102849013--102849097 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
102849003 GAATAAAGGG
* *
102849013 TAAAAGTTGAATTATAGATTAAAAGAAAATAAAAAGGAT
1 TAAAAGGTGAATTATAGATTAAAAGAAAATAAAAAGGAC
102849052 TAAAAGGTGAATTATAGATTAAAAGAAAATAAAAAGGAC
1 TAAAAGGTGAATTATAGATTAAAAGAAAATAAAAAGGAC
102849091 TAAAAGG
1 TAAAAGG
102849098 ACAACTATAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.59, C:0.01, G:0.18, T:0.22
Consensus pattern (39 bp):
TAAAAGGTGAATTATAGATTAAAAGAAAATAAAAAGGAC
Found at i:102849576 original size:22 final size:22
Alignment explanation
Indices: 102849535--102849581 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
102849525 ATATTTGAGT
*
102849535 ATTGGTATTGAATTTAAATTGA
1 ATTGGTATTGAATCTAAATTGA
* * *
102849557 ATTGGTATTTAATCTGAATTTA
1 ATTGGTATTGAATCTAAATTGA
102849579 ATT
1 ATT
102849582 ATTAATTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (22 bp):
ATTGGTATTGAATCTAAATTGA
Found at i:102851391 original size:15 final size:16
Alignment explanation
Indices: 102851353--102851398 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
102851343 TCTACACTTA
102851353 ATTTATCAATACTTATT
1 ATTT-TCAATACTTATT
*
102851370 ATTTTCAATATTTATT
1 ATTTTCAATACTTATT
*
102851386 -TTTTCAACACTTA
1 ATTTTCAATACTTA
102851399 ATTTTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 11 0.42
16 11 0.42
17 4 0.15
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTCAATACTTATT
Found at i:102851402 original size:16 final size:16
Alignment explanation
Indices: 102851346--102851405 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
102851336 TTAAAATTCT
*
102851346 ACACTTAA-TTTATCA
1 ACACTTAATTTTTTCA
*
102851361 ATACTT-ATTATTTTCA
1 ACACTTAATT-TTTTCA
* *
102851377 ATA-TTTATTTTTTCA
1 ACACTTAATTTTTTCA
102851392 ACACTTAATTTTTT
1 ACACTTAATTTTTT
102851406 AATCTACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
14 1 0.03
15 16 0.43
16 20 0.54
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (16 bp):
ACACTTAATTTTTTCA
Found at i:102851403 original size:15 final size:15
Alignment explanation
Indices: 102851346--102851404 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
102851336 TTAAAATTCT
*
102851346 ACACTTAATTTATCA
1 ACACTTAATTTTTCA
* *
102851361 ATACTTATTATTTTCA
1 ACACTTAAT-TTTTCA
* * *
102851377 ATATTTATTTTTTCA
1 ACACTTAATTTTTCA
102851392 ACACTTAATTTTT
1 ACACTTAATTTTT
102851405 TAATCTACCA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
15 23 0.64
16 13 0.36
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (15 bp):
ACACTTAATTTTTCA
Found at i:102854004 original size:46 final size:45
Alignment explanation
Indices: 102853948--102854121 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
102853938 ATCTTGTAGT
102853948 CGATGCATGTCCCAGACATGTCTTATACTAGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTATACTAGCTT-CGTCTCGAGGC
* * * **
102853994 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATAC
1 CGATGCATGTCCCAGACATGTCTTATACTAGC-TTCGTCTCGAGGC
* * * * *
102854040 CGATGACATGTCCCAAACATGGTCTTATACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTATACTAGCT-TCGT-CTCGAGGC
102854088 CGATGCATGTCCCAGACATGTCTTATACTAGCTT
1 CGATGCATGTCCCAGACATGTCTTATACTAGCTT
102854122 ATAATAACCC
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 57 0.54
47 27 0.25
48 20 0.19
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTATACTAGCTTCGTCTCGAGGC
Found at i:102855119 original size:20 final size:20
Alignment explanation
Indices: 102855094--102855132 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
102855084 CTCTTTGCCG
* *
102855094 AAACTTTTTCCTTTTTCTTC
1 AAACTTTTCCCTGTTTCTTC
102855114 AAACTTTTCCCTGTTTCTT
1 AAACTTTTCCCTGTTTCTT
102855133 TTATTCATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.26, G:0.03, T:0.56
Consensus pattern (20 bp):
AAACTTTTCCCTGTTTCTTC
Found at i:102858999 original size:46 final size:46
Alignment explanation
Indices: 102858933--102859243 Score: 337
Period size: 46 Copynumber: 6.8 Consensus size: 46
102858923 TTCTGAAATG
102858933 AAAAT-TGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
1 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
*
102858978 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
1 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
* *
102859024 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
1 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
* * * **
102859070 AAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGA-CG
1 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
* * * * *
102859115 AGAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAA-TGTAACAT
1 AAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACAG-GATAT
* ** ** * *
102859161 GAAATGA-ACAAGACCATGGTTGAAAGATACCATGGCAACTTGACAG
1 AAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
* * *
102859207 AAAATGA-GTAAGACCATAGTTGAAAGACACTATGGCA
1 AAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCA
102859244 TCATGTCAAA
Statistics
Matches: 231, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
45 39 0.17
46 191 0.83
47 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
Found at i:102859087 original size:92 final size:90
Alignment explanation
Indices: 102858939--102859243 Score: 405
Period size: 92 Copynumber: 3.3 Consensus size: 90
102858929 AATGAAAATT
*
102858939 GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATATGTAAGACCATGGTTGAAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAG
*
102859004 ATACCATGGCAACATGATATGAAATGT
66 ATACCATGGCAACATGA-A-GAAATGA
102859031 GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAG
* *
102859096 ATACCATGACAACATGACGAGAATGA
66 ATACCATGGCAACATGAAGA-AATGA
* * * * * ***
102859122 ATAAGACCATGGTTGAAAGATACCATGGCAA-TGTAACATGAAATGAACAAGACCATGGTTGAAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACAG-GATATAAAATGTGTAAGACCATGGTTGAAA
*
102859186 GATACCATGGCAACTTGACAGAAAATGA
65 GATACCATGGCAACATGA-AG-AAATGA
* * *
102859214 GTAAGACCATAGTTGAAAGACACTATGGCA
1 GTAAGACCATGGTTGAAAGATACCATGGCA
102859244 TCATGTCAAA
Statistics
Matches: 190, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
90 3 0.02
91 74 0.39
92 112 0.59
93 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (90 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAG
ATACCATGGCAACATGAAGAAATGA
Found at i:102859179 original size:137 final size:138
Alignment explanation
Indices: 102858932--102859233 Score: 403
Period size: 137 Copynumber: 2.2 Consensus size: 138
102858922 TTTCTGAAAT
* * *
102858932 GAAAAT-TGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATATGTAAGACCATG
1 GAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATAGAAAATATATAAGACCATG
* * ***
102858996 GTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
66 GTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCA
*
102859061 ACAGGATA
131 ACAGGACA
* * * *
102859069 TAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGA-CGAGAATGA-ATAAGACCAT
1 GAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATAGAAAAT-ATATAAGACCAT
**
102859132 GGTTGAAAGATACCATGGCAATGTAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGC
65 GGTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGC
**
102859197 AACTTGACA
130 AACAGGACA
* *
102859206 GAAAATGAGTAAGACCATAGTTGAAAGA
1 GAAAATGTGTAAGACCATGGTTGAAAGA
102859234 CACTATGGCA
Statistics
Matches: 143, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
137 107 0.75
138 36 0.25
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
GAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATAGAAAATATATAAGACCATG
GTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCA
ACAGGACA
Found at i:102859549 original size:16 final size:17
Alignment explanation
Indices: 102859528--102859560 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
102859518 ATGATGGAGC
102859528 ATGAAAT-ATTCATATA
1 ATGAAATGATTCATATA
*
102859544 ATGAAATGATTGATATA
1 ATGAAATGATTCATATA
102859561 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.03, G:0.12, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTCATATA
Found at i:102866685 original size:19 final size:21
Alignment explanation
Indices: 102866655--102866693 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
102866645 CTCTTTGCCG
102866655 AAACTTTATCCCT-TTTCTTC
1 AAACTTTATCCCTGTTTCTTC
102866675 AAACTTT-TCCCTGTTTCTT
1 AAACTTTATCCCTGTTTCTT
102866694 TTATTCATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.18, C:0.28, G:0.03, T:0.51
Consensus pattern (21 bp):
AAACTTTATCCCTGTTTCTTC
Found at i:102870322 original size:14 final size:16
Alignment explanation
Indices: 102870303--102870336 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
102870293 ATATTTATTT
102870303 TATTTA-TAATTTA-A
1 TATTTAGTAATTTATA
102870317 TATTTAGTAATTTATA
1 TATTTAGTAATTTATA
102870333 TATT
1 TATT
102870337 AATTATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 7 0.39
16 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TATTTAGTAATTTATA
Found at i:102882000 original size:108 final size:105
Alignment explanation
Indices: 102881761--102881977 Score: 353
Period size: 108 Copynumber: 2.0 Consensus size: 105
102881751 GACTGAATAA
102881761 AAACAGAAGTAATGCATTTCATAATCCCCTCAACCCATTTTGTAGCAAAACCCATGCAAATCATT
1 AAACAGAAGTAATGC---TCATAATCCCCTCAACCCATTTTGTAGCAAAACCCATGCAAATCATT
102881826 ATTCCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
63 ATTCCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
* *
102881869 AAACAGAAGTAATGCATTTCATAATCCCCTTAACCCATTTTGTAGCAAAACCCATGCGAATCATT
1 AAACAGAAGTAATGC---TCATAATCCCCTCAACCCATTTTGTAGCAAAACCCATGCAAATCATT
102881934 ATTTCCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
63 A-TTCCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
102881978 CATGTCCAAT
Statistics
Matches: 106, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
108 64 0.60
109 42 0.40
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (105 bp):
AAACAGAAGTAATGCTCATAATCCCCTCAACCCATTTTGTAGCAAAACCCATGCAAATCATTATT
CCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
Found at i:102884470 original size:20 final size:20
Alignment explanation
Indices: 102884447--102884484 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
102884437 AATAGATAAG
102884447 TATAATAA-AACTAAGAGAAT
1 TATAATAAGAA-TAAGAGAAT
*
102884467 TATAGTAAGAATAAGAGA
1 TATAATAAGAATAAGAGA
102884485 GAAAAGTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.58, C:0.03, G:0.16, T:0.24
Consensus pattern (20 bp):
TATAATAAGAATAAGAGAAT
Found at i:102891554 original size:21 final size:22
Alignment explanation
Indices: 102891514--102891555 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
102891504 GTCAAATTGA
102891514 CCACACGGGCGTGTTGCCCCTT
1 CCACACGGGCGTGTTGCCCCTT
102891536 CCACACGGGCGTG-TGCCCCT
1 CCACACGGGCGTGTTGCCCCT
102891556 ATGTCAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.10, C:0.43, G:0.29, T:0.19
Consensus pattern (22 bp):
CCACACGGGCGTGTTGCCCCTT
Found at i:102894857 original size:31 final size:31
Alignment explanation
Indices: 102894822--102894882 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
102894812 TTGTAGCCAA
* * *
102894822 AGCTATCACTATTCACTGATCAGGTAGCCGG
1 AGCTACCACTATTCACTAATCAAGTAGCCGG
* *
102894853 AGCTACCATTTTTCACTAATCAAGTAGCCG
1 AGCTACCACTATTCACTAATCAAGTAGCCG
102894883 ATGATCAAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
AGCTACCACTATTCACTAATCAAGTAGCCGG
Found at i:102894926 original size:31 final size:31
Alignment explanation
Indices: 102894884--102894942 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
102894874 AAGTAGCCGA
*
102894884 TGATCAAGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAAGTAGCCGAAGCTACAACTTTTCAT
* *
102894915 TGATCAGGTAGCTGAAGCTACAACTTTT
1 TGATCAAGTAGCCGAAGCTACAACTTTT
102894943 TACTTGCCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (31 bp):
TGATCAAGTAGCCGAAGCTACAACTTTTCAT
Found at i:102895011 original size:50 final size:50
Alignment explanation
Indices: 102894950--102895098 Score: 262
Period size: 50 Copynumber: 3.0 Consensus size: 50
102894940 TTTTACTTGC
102894950 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
1 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
* *
102895000 CATTTGTCCTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATGACTTT
1 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
* *
102895050 CACTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
102895099 GTTGCCATGG
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 93 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (50 bp):
CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
Found at i:102899935 original size:31 final size:31
Alignment explanation
Indices: 102899900--102899969 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
102899890 CTTGTCACTT
* * *
102899900 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * *
102899931 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
102899962 GTAGCCGA
1 GTAGCCGA
102899970 TGATCAGGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:102899991 original size:46 final size:46
Alignment explanation
Indices: 102899924--102900015 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
102899914 CACTATTCAC
* *
102899924 TGATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
102899970 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
102900016 AGCTACCACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:102900008 original size:31 final size:31
Alignment explanation
Indices: 102899970--102900028 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
102899960 AAGTAGCCGA
102899970 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
102900001 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
102900029 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:102900063 original size:19 final size:19
Alignment explanation
Indices: 102900039--102900077 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
102900029 TACTTGCCAT
102900039 TTGTCCTTGATCAGATAAG
1 TTGTCCTTGATCAGATAAG
102900058 TTGTCCTTGATCAGATAAG
1 TTGTCCTTGATCAGATAAG
102900077 T
1 T
102900078 GTAGCCGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (19 bp):
TTGTCCTTGATCAGATAAG
Found at i:102900133 original size:50 final size:50
Alignment explanation
Indices: 102900058--102900203 Score: 274
Period size: 50 Copynumber: 2.9 Consensus size: 50
102900048 ATCAGATAAG
*
102900058 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAT
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
102900108 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
*
102900158 TTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
102900204 GTTGCCATGG
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 94 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (50 bp):
TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
Found at i:102906280 original size:46 final size:46
Alignment explanation
Indices: 102906184--102906280 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 46
102906174 CAAGTGCTAG
* * * *
102906184 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAG
1 TGTAAAACATGCCTAGGACATGCATCGGCCTCGAGATGTAAGCCAA
* *
102906230 TGTAAAACATGCCTAGGACATGCGTCGG-CTACGAGATG-ATAGTCAA
1 TGTAAAACATGCCTAGGACATGCATCGGCCT-CGAGATGTA-AGCCAA
102906276 TGTAA
1 TGTAA
102906281 GACCATGTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
45 3 0.07
46 40 0.93
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
TGTAAAACATGCCTAGGACATGCATCGGCCTCGAGATGTAAGCCAA
Found at i:102913498 original size:35 final size:35
Alignment explanation
Indices: 102913447--102913517 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
102913437 TGACCCGAAT
*
102913447 TCTAAGAGATTACTTGCATGTCAAGTTAAACAAAA
1 TCTAAGAGATTACTTGCAAGTCAAGTTAAACAAAA
*
102913482 TCTAAGAGATTGCTTGCAAGTCAAGTTAAACAAAA
1 TCTAAGAGATTACTTGCAAGTCAAGTTAAACAAAA
102913517 T
1 T
102913518 ATATTTTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.28
Consensus pattern (35 bp):
TCTAAGAGATTACTTGCAAGTCAAGTTAAACAAAA
Found at i:102913573 original size:24 final size:24
Alignment explanation
Indices: 102913535--102913581 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
102913525 CTTTCTAGAA
*
102913535 TATTTAGTAGTATAATATATTTGG
1 TATTTAGTAGCATAATATATTTGG
*
102913559 TATTTATTAGCATAATATATTTG
1 TATTTAGTAGCATAATATATTTG
102913582 ATCTACGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.51
Consensus pattern (24 bp):
TATTTAGTAGCATAATATATTTGG
Found at i:102918837 original size:8 final size:8
Alignment explanation
Indices: 102918820--102918849 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
102918810 TTGCAAATAT
*
102918820 ACATTGTA
1 ACATTCTA
102918828 ACATTCTA
1 ACATTCTA
102918836 ACATTCTA
1 ACATTCTA
102918844 ACATTC
1 ACATTC
102918850 CATGGCAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (8 bp):
ACATTCTA
Found at i:102922104 original size:61 final size:58
Alignment explanation
Indices: 102922039--102922164 Score: 164
Period size: 61 Copynumber: 2.1 Consensus size: 58
102922029 TTTTAATAAG
* * *
102922039 ATTATTATTAAATATATTTTAATAAAAATAAAAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAATACAATTTAAT-AAAAT---AATAAATAATTTAATAATATTCTTAACATA
* *
102922100 ATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAATATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAATAATAAATAATTTAATAATATTCTTAACATA
102922158 ATTATTA
1 ATTATTA
102922165 ATAATATTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
57 19 0.32
58 14 0.24
60 5 0.08
61 21 0.36
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAATACAATTTAATAAAATAATAAATAATTTAATAATATTCTTAACATA
Found at i:102922155 original size:24 final size:24
Alignment explanation
Indices: 102922127--102922172 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
102922117 TTTAATAAAA
102922127 TAATATATAAT-TTAATAATATTCT
1 TAATATA-AATATTAATAATATTCT
*
102922151 TAATATAATTATTAATAATATT
1 TAATATAAATATTAATAATATT
102922173 ATATAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TAATATAAATATTAATAATATTCT
Found at i:102922469 original size:21 final size:21
Alignment explanation
Indices: 102922443--102922483 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
102922433 TTTTAGTGAA
102922443 ATAAAAA-CATTCAAATTTTAC
1 ATAAAAATCATT-AAATTTTAC
*
102922464 ATAAAAATTATTAAATTTTA
1 ATAAAAATCATTAAATTTTA
102922484 GTAACATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (21 bp):
ATAAAAATCATTAAATTTTAC
Found at i:102922624 original size:35 final size:35
Alignment explanation
Indices: 102922577--102922648 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
102922567 ATGTTATTCA
*
102922577 AAAACTCGTAGTTCTTTATGTTATTCAAAAATTTG
1 AAAACTCATAGTTCTTTATGTTATTCAAAAATTTG
102922612 AAAACTCATAGTTCTTTATGTTATTCAAAAATTTG
1 AAAACTCATAGTTCTTTATGTTATTCAAAAATTTG
102922647 AA
1 AA
102922649 GAAAACTTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.42
Consensus pattern (35 bp):
AAAACTCATAGTTCTTTATGTTATTCAAAAATTTG
Found at i:102926038 original size:5 final size:6
Alignment explanation
Indices: 102926024--102926048 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
102926014 CCTATCTCTG
102926024 TTTTCT TTTTCT TTTTCT TTTTCT T
1 TTTTCT TTTTCT TTTTCT TTTTCT T
102926049 GCTCAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:102929607 original size:18 final size:19
Alignment explanation
Indices: 102929586--102929622 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
102929576 TAAATAAATT
102929586 TCAA-ATATAAAATATTCA
1 TCAATATATAAAATATTCA
102929604 TCAATTATATAAAATATTC
1 TCAA-TATATAAAATATTC
102929623 TTTAATAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
20 13 0.76
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (19 bp):
TCAATATATAAAATATTCA
Found at i:102931278 original size:25 final size:25
Alignment explanation
Indices: 102931250--102931314 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
102931240 TCATATACAT
102931250 GTATGCTCATACGAGTTATAAATCG
1 GTATGCTCATACGAGTTATAAATCG
* * * *
102931275 GTATGCTC-TCACGAGTTGTGATTTG
1 GTATGCTCAT-ACGAGTTATAAATCG
*
102931300 GTAAGCTCATACGAG
1 GTATGCTCATACGAG
102931315 CTGGGAATAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
24 1 0.03
25 31 0.94
26 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (25 bp):
GTATGCTCATACGAGTTATAAATCG
Found at i:102931327 original size:25 final size:25
Alignment explanation
Indices: 102931299--102931367 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
102931289 GTTGTGATTT
* * **
102931299 GGTAAGCTCATACGAGCTGGGAATA
1 GGTAAACTCATACAAGCTGCAAATA
* *
102931324 GGTAAACTCTTACAAGCTGCAAATC
1 GGTAAACTCATACAAGCTGCAAATA
102931349 GGTAAACTCATACAAGCTG
1 GGTAAACTCATACAAGCTG
102931368 TGGTGTGTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (25 bp):
GGTAAACTCATACAAGCTGCAAATA
Found at i:102939809 original size:14 final size:14
Alignment explanation
Indices: 102939790--102939817 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102939780 TGGAAAAAGT
102939790 ATAATTTTGATTAA
1 ATAATTTTGATTAA
102939804 ATAATTTTGATTAA
1 ATAATTTTGATTAA
102939818 GTGTTGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
ATAATTTTGATTAA
Found at i:102940911 original size:21 final size:21
Alignment explanation
Indices: 102940873--102940912 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
102940863 AATTTACTCT
*
102940873 CCTTTTATGCTTCTCTCTCAC
1 CCTTTTATGATTCTCTCTCAC
102940894 CCTTTTA-GATTCTCCTCTC
1 CCTTTTATGATTCT-CTCTC
102940913 CTCAAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.38, G:0.05, T:0.47
Consensus pattern (21 bp):
CCTTTTATGATTCTCTCTCAC
Found at i:102948168 original size:18 final size:19
Alignment explanation
Indices: 102948147--102948185 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
102948137 AAGAATCAAG
* *
102948147 TTATTTGAGTTAA-TCGAA
1 TTATTCGAGTCAACTCGAA
102948165 TTATTCGAGTCAACTCGAA
1 TTATTCGAGTCAACTCGAA
102948184 TT
1 TT
102948186 TTTTTTTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (19 bp):
TTATTCGAGTCAACTCGAA
Found at i:102959421 original size:16 final size:16
Alignment explanation
Indices: 102959402--102959447 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
102959392 GAGTGTGTTA
102959402 AAATATATATTTTTAT
1 AAATATATATTTTTAT
* *
102959418 AAATATTTATATTT-T
1 AAATATATATTTTTAT
*
102959433 AAATATATAATTTTA
1 AAATATATATTTTTA
102959448 CCAAATATCC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
AAATATATATTTTTAT
Found at i:102964468 original size:53 final size:53
Alignment explanation
Indices: 102964381--102964531 Score: 194
Period size: 53 Copynumber: 2.8 Consensus size: 53
102964371 CTTACACGGT
* * * *
102964381 TCACATATCATACCGAAGCCATATCCTAGACATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAGCCATGGTCTTATACGGAATCACATTA
* *
102964436 TCACATTATACCGATGCCATAGCCCAGCCATGGTCTTATACAGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCCATGGTCTTATACGGAATCACATTA
** * *
102964489 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCCATGGTCTTATACGG
102964532 GCACACTTAT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 78 0.92
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCCATGGTCTTATACGGAATCACATTA
Found at i:102966665 original size:23 final size:23
Alignment explanation
Indices: 102966624--102966684 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
102966614 ATCATGTAAA
* *
102966624 ATTCAAAATATTTATAAAATAT-T
1 ATTCAAAA-AATTATAAAACATAT
*
102966647 TTTCTAAAAAATTATAAAACATAT
1 ATTC-AAAAAATTATAAAACATAT
102966671 ATTCAAAAAATTAT
1 ATTCAAAAAATTAT
102966685 TTTTAATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 24 0.75
24 8 0.25
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (23 bp):
ATTCAAAAAATTATAAAACATAT
Found at i:102968561 original size:24 final size:24
Alignment explanation
Indices: 102968534--102968589 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
102968524 AAATTACATA
*
102968534 AATATATATTGAAAATAGATAT-AT
1 AATATATATTGAAAA-ACATATAAT
*
102968558 AATA-ATATTTAAAAACATATACAT
1 AATATATATTGAAAAACATATA-AT
102968582 AATATATA
1 AATATATA
102968590 CATAACATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 5 0.19
23 9 0.33
24 10 0.37
25 3 0.11
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.36
Consensus pattern (24 bp):
AATATATATTGAAAAACATATAAT
Found at i:102968657 original size:15 final size:15
Alignment explanation
Indices: 102968614--102968657 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
102968604 CAAAATATAC
102968614 ACATAATAT-ATTAAA
1 ACATAATATGA-TAAA
*
102968629 ACATATACATGATAAA
1 ACATA-ATATGATAAA
102968645 ACATAATATGATA
1 ACATAATATGATA
102968658 TTTACAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 12 0.48
16 12 0.48
17 1 0.04
ACGTcount: A:0.57, C:0.09, G:0.05, T:0.30
Consensus pattern (15 bp):
ACATAATATGATAAA
Found at i:102970460 original size:45 final size:45
Alignment explanation
Indices: 102970411--102970514 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
102970401 CCTCCTGTTG
* * * *
102970411 CTTCAATCTGCTCCA-TTGTAGCTTCAGAGAAATAAGATTTGCT-A
1 CTTCAATCTGCTCCACTTGCAACTTCAAAGAAATAAGACTTG-TGA
* *
102970455 TCTTCAGTCTGCTCCACTTGCAACTTCAAAGAGATAAGACTTGTGA
1 -CTTCAATCTGCTCCACTTGCAACTTCAAAGAAATAAGACTTGTGA
*
102970501 CTTCAATCTACTCC
1 CTTCAATCTGCTCC
102970515 GTTGAAACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
45 27 0.55
46 22 0.45
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTTGCAACTTCAAAGAAATAAGACTTGTGA
Found at i:102970730 original size:43 final size:41
Alignment explanation
Indices: 102970593--102970745 Score: 110
Period size: 43 Copynumber: 3.6 Consensus size: 41
102970583 ATTTTCAGCC
* * **
102970593 TGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAT--TTGCT
* * * * ** *
102970636 CTGTTTCCCTACTGCTGAGGGGTTT-AGATCTGTAAATTCAACC
1 -TGTTACCCTACTGCTTAGGGGTTTAAGGTTTG-AAATT-TGCT
*
102970679 TATTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTG-AAATTT-GCT
*
102970722 TGTTACCCTATTGCTTAGAGGGTT
1 TGTTACCCTACTGCTTAG-GGGTT
102970746 GAAGCCCATC
Statistics
Matches: 82, Mismatches: 22, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
42 22 0.27
43 32 0.39
44 28 0.34
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (41 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAATTTGCT
Found at i:102970745 original size:86 final size:85
Alignment explanation
Indices: 102970586--102970745 Score: 189
Period size: 86 Copynumber: 1.9 Consensus size: 85
102970576 ACATTTGATT
* * ** *
102970586 TTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGCTCTGTTTCCCTACTGC
1 TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGAAAT-ATTGCTCTGTTACCCTACTGC
102970651 TGAGGGGTTTAGATCTGTAAA
65 TGAGGGGTTTAGATCTGTAAA
* * *
102970672 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTTGAAA-ATTTGGCT-TGTTACCCTATTG
1 TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATA-TT-GCTCTGTTACCCTACTG
*
102970735 CTTAGAGGGTT
64 CTGAG-GGGTT
102970746 GAAGCCCATC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
84 1 0.02
85 17 0.27
86 44 0.71
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (85 bp):
TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATATTGCTCTGTTACCCTACTGCT
GAGGGGTTTAGATCTGTAAA
Found at i:102971176 original size:44 final size:43
Alignment explanation
Indices: 102971126--102971272 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 43
102971116 TGATTTGCTT
102971126 CCCTACTGCTTAAGGTGATAAGATCTATAAACTTCAGCTTGTTA
1 CCCTACTGCTTAAGGTGATAAGATCTAT-AACTTCAGCTTGTTA
* * * * ** * * *
102971170 CCCTACTGCTTAGGGGGTTAAAGCTCGT-TGCCTT-TGATCTGTTT
1 CCCTACTGCTTAAGGTGAT-AAGATC-TATAACTTCAGCT-TGTTA
* * *
102971214 CCCTACTGCTTAGGGTGATAAGATCTATATCTTCAGCCTGTTA
1 CCCTACTGCTTAAGGTGATAAGATCTATAACTTCAGCTTGTTA
102971257 CCCTACTGCTT-AGGTG
1 CCCTACTGCTTAAGGTG
102971273 GTTAAGGTCT
Statistics
Matches: 79, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
42 5 0.06
43 26 0.33
44 41 0.52
45 6 0.08
46 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.35
Consensus pattern (43 bp):
CCCTACTGCTTAAGGTGATAAGATCTATAACTTCAGCTTGTTA
Found at i:102971856 original size:55 final size:55
Alignment explanation
Indices: 102971786--102971960 Score: 332
Period size: 55 Copynumber: 3.2 Consensus size: 55
102971776 ACAAAATTTG
102971786 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
1 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
* *
102971841 AAGGGAATAGATTAATCACAGTAAACAAACATTGCTGGAATATAAAATGAATAAA
1 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
102971896 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
1 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
102971951 AAGGGAATAG
1 AAGGGAATAG
102971961 GTGCCCCAGA
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 116 1.00
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (55 bp):
AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
Found at i:102983974 original size:70 final size:70
Alignment explanation
Indices: 102983861--102984025 Score: 258
Period size: 70 Copynumber: 2.4 Consensus size: 70
102983851 TCCTCATTGA
* * * *
102983861 AATACCATACCTACATTTTACAACTCGGTATGGGAAATACCATACCTACATTTCTTAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATAGGAAATACCATACCTACATTTCTCAACTCAGTA
102983926 TGGAT
66 TGGAT
* **
102983931 AATACCATACCTACGTTTCACAACTCAGTATAGTTAATACCATACCTACATTTCTCAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATAGGAAATACCATACCTACATTTCTCAACTCAGTA
102983996 TGGAT
66 TGGAT
*
102984001 GATACCATACCTACATTTCACAACT
1 AATACCATACCTACATTTCACAACT
102984026 TTGTCATGGA
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 86 1.00
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (70 bp):
AATACCATACCTACATTTCACAACTCAGTATAGGAAATACCATACCTACATTTCTCAACTCAGTA
TGGAT
Found at i:102984043 original size:35 final size:35
Alignment explanation
Indices: 102983861--102984025 Score: 233
Period size: 35 Copynumber: 4.7 Consensus size: 35
102983851 TCCTCATTGA
* *
102983861 AATACCATACCTACATTTTACAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
**
102983896 AATACCATACCTACATTTCTTAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* * *
102983931 AATACCATACCTACGTTTCACAACTCAGTATAGTT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
102983966 AATACCATACCTACATTTCTCAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
102984001 GATACCATACCTACATTTCACAACT
1 AATACCATACCTACATTTCACAACT
102984026 TTGTCATGGA
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
34 3 0.03
35 111 0.97
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:102985059 original size:45 final size:46
Alignment explanation
Indices: 102984995--102985118 Score: 214
Period size: 45 Copynumber: 2.7 Consensus size: 46
102984985 GTCGAAATAG
*
102984995 GGTATCTTTCACCCATGGTCTTACACATTTCATATCATGTTGCC-T
1 GGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAT
* *
102985040 GGTATCTTTCATCCATGGTCTTACACATTTCGTATCATGTTGCCAT
1 GGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAT
102985086 GGTATCTTTCAACCATGGTCTTACACATTTCAT
1 GGTATCTTTCAACCATGGTCTTACACATTTCAT
102985119 TTCAGAAAGC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 42 0.57
46 32 0.43
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
GGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAT
Found at i:102994309 original size:51 final size:51
Alignment explanation
Indices: 102994233--102994343 Score: 204
Period size: 51 Copynumber: 2.2 Consensus size: 51
102994223 CGGATCACAT
102994233 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* *
102994284 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
102994335 TTATCACTT
1 TTATCACTT
102994344 ATTACTGACC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:103004003 original size:23 final size:22
Alignment explanation
Indices: 103003977--103004029 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
103003967 TGTATACACG
103003977 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
103004000 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
103004022 TAC-TAATA
1 TACATAATA
103004030 GTACTAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 5 0.18
22 9 0.32
23 14 0.50
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:103004011 original size:3 final size:3
Alignment explanation
Indices: 103003980--103004050 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
103003970 ATACACGTAC
* * * *
103003980 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * *
103004027 ATA GTA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
103004051 CAAGGATATT
Statistics
Matches: 52, Mismatches: 13, Indels: 6
0.73 0.18 0.08
Matches are distributed among these distances:
2 2 0.04
3 44 0.85
4 6 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:103004533 original size:13 final size:12
Alignment explanation
Indices: 103004515--103004552 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
103004505 AAGAAAAAAA
103004515 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
103004528 GAAGAGAGAAGG
1 GAAGAGAGAAGG
103004540 G-AGAGAGAAGG
1 GAAGAGAGAAGG
103004551 GA
1 GA
103004553 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 4 0.17
13 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:103005043 original size:8 final size:8
Alignment explanation
Indices: 103005030--103005054 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
103005020 GGTGTTCGGC
103005030 GCAAGTGG
1 GCAAGTGG
103005038 GCAAGTGG
1 GCAAGTGG
103005046 GCAAGTGG
1 GCAAGTGG
103005054 G
1 G
103005055 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:103013630 original size:91 final size:91
Alignment explanation
Indices: 103013475--103013653 Score: 313
Period size: 91 Copynumber: 2.0 Consensus size: 91
103013465 TGAGCAGCAC
* *
103013475 TTGAAGATGAACCATGCTTGAAGCTTACTACCATGAAAATGGGAAACTCTTTGTCATTGAAAAAG
1 TTGAAGATGAACCATGCTTGAAGATTACTACCATGAAAATGGGAAACTCATTGTCATTGAAAAAG
* *
103013540 AAGAAAATGTACATTTTGGGATTCAA
66 AAGAAAATATACATTTTGAGATTCAA
103013566 TTGAAGATGAACCATGCTTGAAGATTACTACCATGAAAATGGGAAACTCATTGTCATTGAAAAAG
1 TTGAAGATGAACCATGCTTGAAGATTACTACCATGAAAATGGGAAACTCATTGTCATTGAAAAAG
*
103013631 AATAAAATATACATTTTGAGATT
66 AAGAAAATATACATTTTGAGATT
103013654 TTATTCGTTT
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 83 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (91 bp):
TTGAAGATGAACCATGCTTGAAGATTACTACCATGAAAATGGGAAACTCATTGTCATTGAAAAAG
AAGAAAATATACATTTTGAGATTCAA
Found at i:103014203 original size:31 final size:31
Alignment explanation
Indices: 103014168--103014228 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
103014158 TTCCTGCTTT
*
103014168 AAATCCAACCAAAAACAGCAAATATAGCATG
1 AAATCCAACAAAAAACAGCAAATATAGCATG
*
103014199 AAATCCAACAAAAAACAGCAAATGTAGCAT
1 AAATCCAACAAAAAACAGCAAATATAGCAT
103014229 AAAAAATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.56, C:0.21, G:0.10, T:0.13
Consensus pattern (31 bp):
AAATCCAACAAAAAACAGCAAATATAGCATG
Found at i:103014493 original size:21 final size:21
Alignment explanation
Indices: 103014469--103014529 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
103014459 TTATGCTCTG
103014469 CTCTG-CTACCCTCGCTGCTAC
1 CTCTGCCT-CCCTCGCTGCTAC
*
103014490 CTCTGCCTCCCTCGCTGCTAT
1 CTCTGCCTCCCTCGCTGCTAC
* *
103014511 CGCTGCCTCCTTCGCTGCT
1 CTCTGCCTCCCTCGCTGCT
103014530 GCATCTGCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 34 0.94
22 2 0.06
ACGTcount: A:0.05, C:0.48, G:0.16, T:0.31
Consensus pattern (21 bp):
CTCTGCCTCCCTCGCTGCTAC
Found at i:103014537 original size:21 final size:20
Alignment explanation
Indices: 103014477--103014537 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
103014467 TGCTCTGCTA
*
103014477 CCCTCGCTGCTACCTCTGCCT
1 CCCTCGCTGCT-CATCTGCCT
103014498 CCCTCGCTGCT-ATCGCTGCCT
1 CCCTCGCTGCTCAT--CTGCCT
*
103014519 CCTTCGCTGCTGCATCTGC
1 CCCTCGCTGCT-CATCTGC
103014538 TCTAAGTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
19 1 0.03
21 31 0.91
23 2 0.06
ACGTcount: A:0.05, C:0.48, G:0.18, T:0.30
Consensus pattern (20 bp):
CCCTCGCTGCTCATCTGCCT
Found at i:103024822 original size:70 final size:71
Alignment explanation
Indices: 103024687--103024822 Score: 204
Period size: 70 Copynumber: 1.9 Consensus size: 71
103024677 GGAAAATAAT
* *
103024687 TTGGGGAAGACGCAGTTAGGGAAAATGAGAGAAAAGAAATTGGGTAAATGGGGGAATGAAATCGG
1 TTGGGGAAGACGCAGTTAGGGAAAATCAGAG-AAAGAAATTAGGTAAATGGGGGAATGAAATCGG
103024752 GTTTAAG
65 GTTTAAG
**
103024759 TTGGGGAAGACGCAGTTAGGGAAAATCATTG-AAGAAATTAGG-AAATTGGGGGAATGAAATCGG
1 TTGGGGAAGACGCAGTTAGGGAAAATCAGAGAAAGAAATTAGGTAAA-TGGGGGAATGAAATCGG
103024822 G
65 G
103024823 GTAATCAGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
69 3 0.05
70 28 0.47
72 28 0.47
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.20
Consensus pattern (71 bp):
TTGGGGAAGACGCAGTTAGGGAAAATCAGAGAAAGAAATTAGGTAAATGGGGGAATGAAATCGGG
TTTAAG
Found at i:103025122 original size:115 final size:114
Alignment explanation
Indices: 103024986--103025267 Score: 361
Period size: 115 Copynumber: 2.5 Consensus size: 114
103024976 GTTTTAAACA
* * * *
103024986 TTTTGCACAATCGTAAAACATTTTTGCGGTGTTTTATGAGAAAATGCCACTAAAGGATATCCTTT
1 TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAAAAGAT-TCCTTT
* *
103025051 TGCGGCGTTTTAGT-AAAAACGCCACTAATAGGCAGACAAAAACGACAGCC
65 TGCGGCG-TTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
* * * *
103025101 TTTTGCACACTCTTAAAACATTTTTCGTGGCGTTTAATGAGAAAATGCCACTAAAAGCTTCTTTT
1 TTTTGCACACTCTTAAAACATTTTT-GCGGCGTTTTATGAGAAAATGCCACTAAAAGATTCCTTT
** *
103025166 TGCGGCGTTTACTAAAAAACGCCACTAATAGTTAGAAAAAAACGACAGCG
65 TGCGGCGTTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
* * * * *
103025216 TTTTCCACACGCTTAAAACATATTTGCGGCGTTTTCTTA-AAAATGCCACTAA
1 TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAA
103025268 TAGTCAGAAA
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
113 13 0.09
114 15 0.10
115 89 0.61
116 28 0.19
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (114 bp):
TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAAAAGATTCCTTTT
GCGGCGTTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
Found at i:103025713 original size:22 final size:22
Alignment explanation
Indices: 103025668--103025715 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
103025658 ATGAATTTTT
* * **
103025668 TTTAAGATTTTAGGGTTTTTGG
1 TTTAAGAGTTTAGAGTTTAGGG
103025690 TTTAAGAGTTTAGAGTTTAGGG
1 TTTAAGAGTTTAGAGTTTAGGG
103025712 TTTA
1 TTTA
103025716 TAGTTTAAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (22 bp):
TTTAAGAGTTTAGAGTTTAGGG
Found at i:103025720 original size:14 final size:14
Alignment explanation
Indices: 103025676--103025728 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
103025666 TTTTTAAGAT
* *
103025676 TTTAGGGTTTTTGG
1 TTTAGGGTTTATAG
* *
103025690 TTTAAGAGTTTAGAG
1 TTT-AGGGTTTATAG
103025705 TTTAGGGTTTATAG
1 TTTAGGGTTTATAG
*
103025719 TTTAAGGTTT
1 TTTAGGGTTT
103025729 GGAATTTAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 21 0.68
15 10 0.32
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:103025721 original size:29 final size:28
Alignment explanation
Indices: 103025676--103025771 Score: 93
Period size: 29 Copynumber: 3.3 Consensus size: 28
103025666 TTTTTAAGAT
* *
103025676 TTTAGGGTTTTTGGTTTAAGAGTTTAGAG
1 TTTAGGGTTTATAGTTTAAG-GTTTAGAG
* *
103025705 TTTAGGGTTTATAGTTTAAGGTTTGGAA
1 TTTAGGGTTTATAGTTTAAGGTTTAGAG
* **
103025733 TTTAAGGTCCATAGTTTATAGGTTTAGAGG
1 TTTAGGGTTTATAGTTTA-AGGTTTAGA-G
*
103025763 TTAAGGGTT
1 TTTAGGGTT
103025772 AGGAGTTAGG
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
28 21 0.40
29 26 0.49
30 6 0.11
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (28 bp):
TTTAGGGTTTATAGTTTAAGGTTTAGAG
Found at i:103025780 original size:21 final size:21
Alignment explanation
Indices: 103025756--103025805 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
103025746 GTTTATAGGT
103025756 TTAGAGGTTAA-GGGTTAGGAG
1 TTAG-GGTTAATGGGTTAGGAG
*
103025777 TTAGGGTTAATGGGTTAGGAT
1 TTAGGGTTAATGGGTTAGGAG
103025798 TTATGGGT
1 TTA-GGGT
103025806 CTAGTTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.23
21 16 0.62
22 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (21 bp):
TTAGGGTTAATGGGTTAGGAG
Found at i:103026373 original size:15 final size:15
Alignment explanation
Indices: 103026323--103026388 Score: 57
Period size: 15 Copynumber: 4.5 Consensus size: 15
103026313 AATCATAAAA
103026323 CATAAA-CCATCAA-C
1 CATAAACCCAT-AATC
* *
103026337 CATAAACCC-CAACC
1 CATAAACCCATAATC
*
103026351 CTTAAACCCATAATC
1 CATAAACCCATAATC
* *
103026366 CCTAAACCCATCATC
1 CATAAACCCATAATC
103026381 CATAAACC
1 CATAAACC
103026389 TTAAAATAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 15 0.36
15 25 0.60
ACGTcount: A:0.42, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
CATAAACCCATAATC
Found at i:103028374 original size:21 final size:21
Alignment explanation
Indices: 103028350--103028399 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
103028340 GGGTGCTTCC
*
103028350 GGAGGTTGTGGTGGTGGGGGT
1 GGAGGTTGTGGGGGTGGGGGT
103028371 GGAGGTTGTGGGGGTGGGGGT
1 GGAGGTTGTGGGGGTGGGGGT
103028392 GGAGGTTG
1 GGAGGTTG
103028400 ATGATGATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.06, C:0.00, G:0.68, T:0.26
Consensus pattern (21 bp):
GGAGGTTGTGGGGGTGGGGGT
Found at i:103029843 original size:4 final size:4
Alignment explanation
Indices: 103029834--103029858 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
103029824 TTGTCTTAAG
103029834 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
103029859 GTTTTTTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:103034354 original size:70 final size:71
Alignment explanation
Indices: 103034219--103034354 Score: 204
Period size: 70 Copynumber: 1.9 Consensus size: 71
103034209 GGAAAATAAT
* *
103034219 TTGGGGAAGACGCAGTTAGGGAAAATGAGAGAAAAGAAATTGGGTAAATGGGGGAATGAAATCGG
1 TTGGGGAAGACGCAGTTAGGGAAAATCAGAG-AAAGAAATTAGGTAAATGGGGGAATGAAATCGG
103034284 GTTTAAG
65 GTTTAAG
**
103034291 TTGGGGAAGACGCAGTTAGGGAAAATCATTG-AAGAAATTAGG-AAATTGGGGGAATGAAATCGG
1 TTGGGGAAGACGCAGTTAGGGAAAATCAGAGAAAGAAATTAGGTAAA-TGGGGGAATGAAATCGG
103034354 G
65 G
103034355 GTAATCAGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
69 3 0.05
70 28 0.47
72 28 0.47
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.20
Consensus pattern (71 bp):
TTGGGGAAGACGCAGTTAGGGAAAATCAGAGAAAGAAATTAGGTAAATGGGGGAATGAAATCGGG
TTTAAG
Found at i:103034654 original size:115 final size:114
Alignment explanation
Indices: 103034518--103034799 Score: 361
Period size: 115 Copynumber: 2.5 Consensus size: 114
103034508 GTTTTAAACA
* * * *
103034518 TTTTGCACAATCGTAAAACATTTTTGCGGTGTTTTATGAGAAAATGCCACTAAAGGATATCCTTT
1 TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAAAAGAT-TCCTTT
* *
103034583 TGCGGCGTTTTAGT-AAAAACGCCACTAATAGGCAGACAAAAACGACAGCC
65 TGCGGCG-TTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
* * * *
103034633 TTTTGCACACTCTTAAAACATTTTTCGTGGCGTTTAATGAGAAAATGCCACTAAAAGCTTCTTTT
1 TTTTGCACACTCTTAAAACATTTTT-GCGGCGTTTTATGAGAAAATGCCACTAAAAGATTCCTTT
** *
103034698 TGCGGCGTTTACTAAAAAACGCCACTAATAGTTAGAAAAAAACGACAGCG
65 TGCGGCGTTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
* * * * *
103034748 TTTTCCACACGCTTAAAACATATTTGCGGCGTTTTCTTA-AAAATGCCACTAA
1 TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAA
103034800 TAGTCAGAAA
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
113 13 0.09
114 15 0.10
115 89 0.61
116 28 0.19
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (114 bp):
TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAAAAGATTCCTTTT
GCGGCGTTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
Found at i:103035244 original size:22 final size:22
Alignment explanation
Indices: 103035199--103035246 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
103035189 ATGAATTTTT
* * **
103035199 TTTAAGATTTTAGGGTTTTTGG
1 TTTAAGAGTTTAGAGTTTAGGG
103035221 TTTAAGAGTTTAGAGTTTAGGG
1 TTTAAGAGTTTAGAGTTTAGGG
103035243 TTTA
1 TTTA
103035247 TAGTTTAAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (22 bp):
TTTAAGAGTTTAGAGTTTAGGG
Found at i:103035251 original size:14 final size:14
Alignment explanation
Indices: 103035207--103035259 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
103035197 TTTTTAAGAT
* *
103035207 TTTAGGGTTTTTGG
1 TTTAGGGTTTATAG
* *
103035221 TTTAAGAGTTTAGAG
1 TTT-AGGGTTTATAG
103035236 TTTAGGGTTTATAG
1 TTTAGGGTTTATAG
*
103035250 TTTAAGGTTT
1 TTTAGGGTTT
103035260 GGAATTTAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 21 0.68
15 10 0.32
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:103035252 original size:29 final size:28
Alignment explanation
Indices: 103035207--103035302 Score: 93
Period size: 29 Copynumber: 3.3 Consensus size: 28
103035197 TTTTTAAGAT
* *
103035207 TTTAGGGTTTTTGGTTTAAGAGTTTAGAG
1 TTTAGGGTTTATAGTTTAAG-GTTTAGAG
* *
103035236 TTTAGGGTTTATAGTTTAAGGTTTGGAA
1 TTTAGGGTTTATAGTTTAAGGTTTAGAG
* **
103035264 TTTAAGGTCCATAGTTTATAGGTTTAGAGG
1 TTTAGGGTTTATAGTTTA-AGGTTTAGA-G
*
103035294 TTAAGGGTT
1 TTTAGGGTT
103035303 AGGAGTTAGG
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
28 21 0.40
29 26 0.49
30 6 0.11
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (28 bp):
TTTAGGGTTTATAGTTTAAGGTTTAGAG
Found at i:103035311 original size:21 final size:21
Alignment explanation
Indices: 103035287--103035336 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
103035277 GTTTATAGGT
103035287 TTAGAGGTTAA-GGGTTAGGAG
1 TTAG-GGTTAATGGGTTAGGAG
*
103035308 TTAGGGTTAATGGGTTAGGAT
1 TTAGGGTTAATGGGTTAGGAG
103035329 TTATGGGT
1 TTA-GGGT
103035337 CTAGTTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.23
21 16 0.62
22 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (21 bp):
TTAGGGTTAATGGGTTAGGAG
Found at i:103035904 original size:15 final size:15
Alignment explanation
Indices: 103035854--103035919 Score: 57
Period size: 15 Copynumber: 4.5 Consensus size: 15
103035844 AATCATAAAA
103035854 CATAAA-CCATCAA-C
1 CATAAACCCAT-AATC
* *
103035868 CATAAACCC-CAACC
1 CATAAACCCATAATC
*
103035882 CTTAAACCCATAATC
1 CATAAACCCATAATC
* *
103035897 CCTAAACCCATCATC
1 CATAAACCCATAATC
103035912 CATAAACC
1 CATAAACC
103035920 TTAAAATAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 15 0.36
15 25 0.60
ACGTcount: A:0.42, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
CATAAACCCATAATC
Found at i:103037903 original size:21 final size:21
Alignment explanation
Indices: 103037879--103037928 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
103037869 GGGTGCTTCC
*
103037879 GGAGGTTGTGGTGGTGGGGGT
1 GGAGGTTGTGGGGGTGGGGGT
103037900 GGAGGTTGTGGGGGTGGGGGT
1 GGAGGTTGTGGGGGTGGGGGT
103037921 GGAGGTTG
1 GGAGGTTG
103037929 ATGATGATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.06, C:0.00, G:0.68, T:0.26
Consensus pattern (21 bp):
GGAGGTTGTGGGGGTGGGGGT
Found at i:103039373 original size:4 final size:4
Alignment explanation
Indices: 103039364--103039388 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
103039354 TTGTCTTAAG
103039364 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
103039389 GTTTTTTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:103043896 original size:70 final size:71
Alignment explanation
Indices: 103043761--103043896 Score: 204
Period size: 70 Copynumber: 1.9 Consensus size: 71
103043751 GGAAAATAAT
* *
103043761 TTGGGGAAGACGCAGTTAGGGAAAATGAGAGAAAAGAAATTGGGTAAATGGGGGAATGAAATCGG
1 TTGGGGAAGACGCAGTTAGGGAAAATCAGAG-AAAGAAATTAGGTAAATGGGGGAATGAAATCGG
103043826 GTTTAAG
65 GTTTAAG
**
103043833 TTGGGGAAGACGCAGTTAGGGAAAATCATTG-AAGAAATTAGG-AAATTGGGGGAATGAAATCGG
1 TTGGGGAAGACGCAGTTAGGGAAAATCAGAGAAAGAAATTAGGTAAA-TGGGGGAATGAAATCGG
103043896 G
65 G
103043897 GTAATCAGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
69 3 0.05
70 28 0.47
72 28 0.47
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.20
Consensus pattern (71 bp):
TTGGGGAAGACGCAGTTAGGGAAAATCAGAGAAAGAAATTAGGTAAATGGGGGAATGAAATCGGG
TTTAAG
Found at i:103044196 original size:115 final size:114
Alignment explanation
Indices: 103044060--103044341 Score: 361
Period size: 115 Copynumber: 2.5 Consensus size: 114
103044050 GTTTTAAACA
* * * *
103044060 TTTTGCACAATCGTAAAACATTTTTGCGGTGTTTTATGAGAAAATGCCACTAAAGGATATCCTTT
1 TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAAAAGAT-TCCTTT
* *
103044125 TGCGGCGTTTTAGT-AAAAACGCCACTAATAGGCAGACAAAAACGACAGCC
65 TGCGGCG-TTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
* * * *
103044175 TTTTGCACACTCTTAAAACATTTTTCGTGGCGTTTAATGAGAAAATGCCACTAAAAGCTTCTTTT
1 TTTTGCACACTCTTAAAACATTTTT-GCGGCGTTTTATGAGAAAATGCCACTAAAAGATTCCTTT
** *
103044240 TGCGGCGTTTACTAAAAAACGCCACTAATAGTTAGAAAAAAACGACAGCG
65 TGCGGCGTTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
* * * * *
103044290 TTTTCCACACGCTTAAAACATATTTGCGGCGTTTTCTTA-AAAATGCCACTAA
1 TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAA
103044342 TAGTCAGAAA
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
113 13 0.09
114 15 0.10
115 89 0.61
116 28 0.19
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (114 bp):
TTTTGCACACTCTTAAAACATTTTTGCGGCGTTTTATGAGAAAATGCCACTAAAAGATTCCTTTT
GCGGCGTTTACTAAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
Found at i:103044785 original size:22 final size:22
Alignment explanation
Indices: 103044740--103044787 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
103044730 TATGAATTTT
* * **
103044740 TTTAAGATTTTAGGGTTTTTGG
1 TTTAAGAGTTTAGAGTTTAGGG
103044762 TTTAAGAGTTTAGAGTTTAGGG
1 TTTAAGAGTTTAGAGTTTAGGG
103044784 TTTA
1 TTTA
103044788 TAGTTTAAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (22 bp):
TTTAAGAGTTTAGAGTTTAGGG
Found at i:103044792 original size:14 final size:14
Alignment explanation
Indices: 103044748--103044800 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
103044738 TTTTTAAGAT
* *
103044748 TTTAGGGTTTTTGG
1 TTTAGGGTTTATAG
* *
103044762 TTTAAGAGTTTAGAG
1 TTT-AGGGTTTATAG
103044777 TTTAGGGTTTATAG
1 TTTAGGGTTTATAG
*
103044791 TTTAAGGTTT
1 TTTAGGGTTT
103044801 GGAATTTAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 21 0.68
15 10 0.32
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:103044793 original size:29 final size:28
Alignment explanation
Indices: 103044748--103044843 Score: 93
Period size: 29 Copynumber: 3.3 Consensus size: 28
103044738 TTTTTAAGAT
* *
103044748 TTTAGGGTTTTTGGTTTAAGAGTTTAGAG
1 TTTAGGGTTTATAGTTTAAG-GTTTAGAG
* *
103044777 TTTAGGGTTTATAGTTTAAGGTTTGGAA
1 TTTAGGGTTTATAGTTTAAGGTTTAGAG
* **
103044805 TTTAAGGTCCATAGTTTATAGGTTTAGAGG
1 TTTAGGGTTTATAGTTTA-AGGTTTAGA-G
*
103044835 TTAAGGGTT
1 TTTAGGGTT
103044844 AGGAGTTAGG
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
28 21 0.40
29 26 0.49
30 6 0.11
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (28 bp):
TTTAGGGTTTATAGTTTAAGGTTTAGAG
Found at i:103044852 original size:21 final size:21
Alignment explanation
Indices: 103044828--103044877 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
103044818 GTTTATAGGT
103044828 TTAGAGGTTAA-GGGTTAGGAG
1 TTAG-GGTTAATGGGTTAGGAG
*
103044849 TTAGGGTTAATGGGTTAGGAT
1 TTAGGGTTAATGGGTTAGGAG
103044870 TTATGGGT
1 TTA-GGGT
103044878 CTAGTTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.23
21 16 0.62
22 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (21 bp):
TTAGGGTTAATGGGTTAGGAG
Found at i:103045445 original size:15 final size:15
Alignment explanation
Indices: 103045395--103045460 Score: 57
Period size: 15 Copynumber: 4.5 Consensus size: 15
103045385 AATCATAAAA
103045395 CATAAA-CCATCAA-C
1 CATAAACCCAT-AATC
* *
103045409 CATAAACCC-CAACC
1 CATAAACCCATAATC
*
103045423 CTTAAACCCATAATC
1 CATAAACCCATAATC
* *
103045438 CCTAAACCCATCATC
1 CATAAACCCATAATC
103045453 CATAAACC
1 CATAAACC
103045461 TTAAAATAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 15 0.36
15 25 0.60
ACGTcount: A:0.42, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
CATAAACCCATAATC
Found at i:103047445 original size:21 final size:21
Alignment explanation
Indices: 103047421--103047470 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
103047411 GGGTGCTTCC
*
103047421 GGAGGTTGTGGTGGTGGGGGT
1 GGAGGTTGTGGGGGTGGGGGT
103047442 GGAGGTTGTGGGGGTGGGGGT
1 GGAGGTTGTGGGGGTGGGGGT
103047463 GGAGGTTG
1 GGAGGTTG
103047471 ATGATGATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.06, C:0.00, G:0.68, T:0.26
Consensus pattern (21 bp):
GGAGGTTGTGGGGGTGGGGGT
Found at i:103048913 original size:4 final size:4
Alignment explanation
Indices: 103048904--103048928 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
103048894 TTGTCTTAAG
103048904 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
103048929 GTTTTTTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:103050059 original size:87 final size:86
Alignment explanation
Indices: 103049909--103050095 Score: 295
Period size: 87 Copynumber: 2.2 Consensus size: 86
103049899 TTTATTGGGA
* *
103049909 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAG
1 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAAG
103049974 GCTTTTAGCGGCGTTTGTGGT
66 GCTTTTAGCGGCGTTTGTGGT
*
103049995 AAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAA
1 AAAAACGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAA
**
103050060 GGCTTTTAGCGGCGCTTT-TTTT
65 GGCTTTTAGCGGCG-TTTGTGGT
*
103050082 ACAAACGCCGCTAA
1 AAAAACGCCGCTAA
103050096 TTTTGGCAGA
Statistics
Matches: 92, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
86 23 0.25
87 66 0.72
88 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAAG
GCTTTTAGCGGCGTTTGTGGT
Found at i:103050095 original size:43 final size:43
Alignment explanation
Indices: 103049904--103050073 Score: 286
Period size: 43 Copynumber: 3.9 Consensus size: 43
103049894 TGGCATTTAT
* *
103049904 TGGGAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGTGTTTG
1 TGGG-AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTG
103049948 TGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTG
1 TGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTG
*
103049991 TGGTAAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGCGGCGTTTG
1 TGGGAAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTG
*
103050035 GGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
1 TGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
103050074 CTTTTTTTAC
Statistics
Matches: 120, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
43 75 0.62
44 45 0.38
ACGTcount: A:0.25, C:0.18, G:0.34, T:0.23
Consensus pattern (43 bp):
TGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTG
Found at i:103050183 original size:31 final size:31
Alignment explanation
Indices: 103050148--103050230 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
103050138 CTTCCTGCAT
* *
103050148 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
103050179 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
103050210 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
103050231 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.61, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:103054714 original size:29 final size:30
Alignment explanation
Indices: 103054655--103054712 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
103054645 TCTGAGCCTT
*
103054655 GGGGAAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAAATGTAATTATGAAAAAGTTTA
* * *
103054685 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGAAAAAATGTAATTATGAAAAAGTT
103054713 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGAAAAAATGTAATTATGAAAAAGTTTA
Found at i:103054942 original size:13 final size:13
Alignment explanation
Indices: 103054924--103054955 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
103054914 TTTCCAGCAA
103054924 TTATGAATTTATT
1 TTATGAATTTATT
103054937 TTATGAATTTATT
1 TTATGAATTTATT
*
103054950 TGATGA
1 TTATGA
103054956 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:103055163 original size:50 final size:50
Alignment explanation
Indices: 103055050--103055340 Score: 370
Period size: 50 Copynumber: 5.7 Consensus size: 50
103055040 ATTTGGGTAA
* * *
103055050 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
103055106 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* *
103055156 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCAACGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
103055206 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* *
103055256 AGAGGTCCC-TATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
* **
103055305 AAAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 -AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
103055341 TTTGGCATGT
Statistics
Matches: 213, Mismatches: 19, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
48 1 0.00
49 33 0.15
50 110 0.52
51 24 0.11
52 1 0.00
53 3 0.01
55 2 0.01
56 39 0.18
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:103055349 original size:156 final size:153
Alignment explanation
Indices: 103055050--103055340 Score: 421
Period size: 150 Copynumber: 1.9 Consensus size: 153
103055040 ATTTGGGTAA
103055050 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* * * ** *
103055115 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGAGGTCCCCTGTAAGACCATGTC
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACCGACACGAAACATCCCATGTAAGACCATGTC
103055180 TGGGACATGGCATGGGCAACGAGACG
128 TGGGACATGGCATGGGCAACGAGACG
* * *
103055206 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGT-CCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
103055267 TAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACGAAAACATCCCATGTAAGACCATGTCT
66 TAAGACCATGTCTGGGACATGGCATGGGCACCGA-CACG-AAACATCCCATGTAAGACCATGTCT
103055331 GGGACATGGC
129 GGGACATGGC
103055341 TTTGGCATGT
Statistics
Matches: 124, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
148 1 0.01
149 39 0.31
150 40 0.32
151 2 0.02
155 2 0.02
156 40 0.32
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.19
Consensus pattern (153 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCGACACGAAACATCCCATGTAAGACCATGTCTGG
GACATGGCATGGGCAACGAGACG
Found at i:103058957 original size:9 final size:9
Alignment explanation
Indices: 103058943--103059132 Score: 100
Period size: 9 Copynumber: 20.6 Consensus size: 9
103058933 TATTTAAGTA
103058943 TTATGTAAG
1 TTATGTAAG
103058952 TTATGTAAG
1 TTATGTAAG
*
103058961 TTATGATATG
1 TTATG-TAAG
* * *
103058971 ATATAT-AT
1 TTATGTAAG
*
103058979 TTATGTAAA
1 TTATGTAAG
* *
103058988 TTATAT-AT
1 TTATGTAAG
*
103058996 TTATCTAAG
1 TTATGTAAG
*
103059005 TTATATAAG
1 TTATGTAAG
103059014 TTATGTAAG
1 TTATGTAAG
*
103059023 TTATGTAAA
1 TTATGTAAG
*
103059032 TTATGATATAAAA
1 TTATG---T-AAG
*
103059045 TATATTTAAG
1 T-TATGTAAG
103059055 TATTATGTAAG
1 --TTATGTAAG
103059066 TTATGTAAG
1 TTATGTAAG
* *
103059075 TTATAT-AT
1 TTATGTAAG
*
103059083 TTATCTAAG
1 TTATGTAAG
*
103059092 TTATATAAG
1 TTATGTAAG
*
103059101 TTATGTACG
1 TTATGTAAG
103059110 TCT-TGTAAG
1 T-TATGTAAG
* *
103059119 TTATATAAA
1 TTATGTAAG
103059128 TTATG
1 TTATG
103059133 ATATCAAATA
Statistics
Matches: 139, Mismatches: 29, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
8 17 0.12
9 96 0.69
10 9 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:103059025 original size:71 final size:69
Alignment explanation
Indices: 103058943--103059105 Score: 202
Period size: 71 Copynumber: 2.3 Consensus size: 69
103058933 TATTTAAGTA
* * * *
103058943 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
103059007 ATATAAG
64 ATAT-AG
* * *
103059014 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
103059079 ATAT
66 ATAG
* *
103059083 TTATCTAAGTTATATAAGTTATG
1 TTATGTAAGTTATGTAAGTTATG
103059106 TACGTCTTGT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 27 0.34
70 15 0.19
71 38 0.47
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:103059081 original size:87 final size:90
Alignment explanation
Indices: 103058979--103059163 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 90
103058969 TGATATATAT
*
103058979 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTACTGTAAGTTATATAAATTATGATAT
103059041 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
*
103059066 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTCTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA---C-TGTAAGTTATATAAATTA
* *
103059131 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
103059162 TT
1 TT
103059164 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 34 0.40
90 1 0.01
91 2 0.02
96 48 0.56
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTACTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:103059119 original size:114 final size:114
Alignment explanation
Indices: 103058919--103059132 Score: 281
Period size: 114 Copynumber: 1.9 Consensus size: 114
103058909 ACTAGTTATG
* * * *
103058919 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* *
103058984 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATCTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
103059033 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
103059096 ATAAGTTATGTACGTCT-TGTAAGTTATATAAATTATG
65 ATAAATTATATA--TCTATCTAAGTTATATAAATTATG
103059133 ATATCAAATA
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.21
114 62 0.72
115 2 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATCTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:103059171 original size:87 final size:87
Alignment explanation
Indices: 103058979--103059163 Score: 227
Period size: 87 Copynumber: 2.1 Consensus size: 87
103058969 TGATATATAT
*
103058979 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
103059044 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* *
103059066 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTCT-TGTAAGTTAT-ATA-AA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGT-TATGTAAATTATGATATAA
*
103059128 TTATGATATCAAATATATTTATGT-A-
65 -AAT-ATATCAAA-ATA-TTATGTAAG
103059153 TTATGTAAGTT
1 TTATGTAAGTT
103059164 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 69 0.80
88 4 0.05
89 6 0.07
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:103059257 original size:15 final size:15
Alignment explanation
Indices: 103059237--103059266 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
103059227 AAGTAGCAGG
103059237 ATTAAATAATATTTA
1 ATTAAATAATATTTA
103059252 ATTAAATAATATTTA
1 ATTAAATAATATTTA
103059267 TAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:103059507 original size:70 final size:72
Alignment explanation
Indices: 103059394--103059555 Score: 285
Period size: 70 Copynumber: 2.3 Consensus size: 72
103059384 AAGTACATAT
103059394 TAATATAAAAAAAGAATCGT-AATAAAAAAATCAAACATTATTAATATAAAA-AATAGTAATTTG
1 TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAATAATAGTAATTTG
103059457 AATATAA
66 AATATAA
**
103059464 TAATAT-AAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAATAATAGTAATTTG
1 TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAATAATAGTAATTTG
103059528 AATATAA
66 AATATAA
103059535 TAATATAAAAAAAGAATCGTA
1 TAATATAAAAAAAGAATCGTA
103059556 GTTTAATTTT
Statistics
Matches: 87, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
69 13 0.15
70 35 0.40
71 25 0.29
72 14 0.16
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (72 bp):
TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAATAATAGTAATTTG
AATATAA
Found at i:103059972 original size:274 final size:275
Alignment explanation
Indices: 103059482--103060582 Score: 2145
Period size: 274 Copynumber: 4.0 Consensus size: 275
103059472 AAAAGAATCG
*
103059482 TAAATATTAAAATCAAACATTATTAATATAAAATAATAGTAATTTGAATATAATAATATAAAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
103059547 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
66 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
103059612 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
131 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
*
103059677 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCTGTCAGGTTTCCAGCCTATATACTTTG
196 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
103059742 AATCTTTAAAATATT
261 AATCTTTAAAATATT
103059757 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT-AAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
103059821 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
66 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
103059886 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
131 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
103059951 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
196 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
103060016 AATCTTTAAAATATT
261 AATCTTTAAAATATT
103060031 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
103060096 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
66 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
103060161 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
131 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
103060226 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
196 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
103060291 AATCTTTAAAATATT
261 AATCTTTAAAATATT
103060306 TAAATATTAAAATCAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAATAT-AAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
103060369 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
66 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
103060434 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
131 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
* *
103060499 AGAATCCATTATATCTTGTAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
196 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
103060564 AATCTTTAAAATATT
261 AATCTTTAAAATATT
103060579 TAAA
1 TAAA
103060583 ATAAGGTTGG
Statistics
Matches: 821, Mismatches: 4, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
273 217 0.26
274 302 0.37
275 302 0.37
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (275 bp):
TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
AATCTTTAAAATATT
Found at i:103060864 original size:15 final size:15
Alignment explanation
Indices: 103060844--103060872 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
103060834 AGAATTTTGA
103060844 AATAAAACGTACCTT
1 AATAAAACGTACCTT
103060859 AATAAAACGTACCT
1 AATAAAACGTACCT
103060873 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:103061380 original size:183 final size:183
Alignment explanation
Indices: 103061072--103061440 Score: 693
Period size: 183 Copynumber: 2.0 Consensus size: 183
103061062 CCTAGAACAG
103061072 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
103061137 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* *
103061202 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
*
103061255 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
103061320 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* *
103061385 AGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
103061438 ATG
1 ATG
103061441 GAACTATATC
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
Found at i:103064381 original size:15 final size:15
Alignment explanation
Indices: 103064361--103064409 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
103064351 GGTAAAAATT
103064361 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
103064376 TT-GGGG-G-A-AAG
1 TTGGGGGAGAAGAAG
*
103064387 TTAGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
103064402 TTGGGGGA
1 TTGGGGGA
103064410 AATCGGGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
11 5 0.17
12 5 0.17
13 2 0.07
14 5 0.17
15 12 0.41
ACGTcount: A:0.31, C:0.00, G:0.53, T:0.16
Consensus pattern (15 bp):
TTGGGGGAGAAGAAG
Found at i:103064721 original size:28 final size:28
Alignment explanation
Indices: 103064689--103064746 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
103064679 AATCAAAACT
*
103064689 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
103064717 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
103064745 CT
1 CT
103064747 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:103064747 original size:21 final size:21
Alignment explanation
Indices: 103064723--103064766 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
103064713 ATCCCTATAA
* *
103064723 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
103064744 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
103064765 CC
1 CC
103064767 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:103064968 original size:15 final size:15
Alignment explanation
Indices: 103064948--103064996 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
103064938 GGTAAAAATT
103064948 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
103064963 TT-GGGG-G-A-AAG
1 TTGGGGGAGAAGAAG
*
103064974 TTAGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
103064989 TTGGGGGA
1 TTGGGGGA
103064997 AATCGGGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
11 5 0.17
12 5 0.17
13 2 0.07
14 5 0.17
15 12 0.41
ACGTcount: A:0.31, C:0.00, G:0.53, T:0.16
Consensus pattern (15 bp):
TTGGGGGAGAAGAAG
Found at i:103065307 original size:28 final size:28
Alignment explanation
Indices: 103065275--103065332 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
103065265 AATCAAAACT
*
103065275 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
103065303 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
103065331 CT
1 CT
103065333 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:103065333 original size:21 final size:21
Alignment explanation
Indices: 103065309--103065352 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
103065299 ATCCCTATAA
* *
103065309 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
103065330 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
103065351 CC
1 CC
103065353 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:103065585 original size:7 final size:7
Alignment explanation
Indices: 103065574--103065621 Score: 87
Period size: 7 Copynumber: 6.9 Consensus size: 7
103065564 CCCTAAGTAT
*
103065574 TAACCCT
1 TAACCCC
103065581 TAACCCC
1 TAACCCC
103065588 TAACCCC
1 TAACCCC
103065595 TAACCCC
1 TAACCCC
103065602 TAACCCC
1 TAACCCC
103065609 TAACCCC
1 TAACCCC
103065616 TAACCC
1 TAACCC
103065622 TTAAATCATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.29, C:0.54, G:0.00, T:0.17
Consensus pattern (7 bp):
TAACCCC
Found at i:103065784 original size:41 final size:41
Alignment explanation
Indices: 103065727--103065805 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
103065717 AACCCTAAAC
103065727 TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTTA
**
103065768 TTTTTAGCGGTGTTTTACCAAAAGCGCCGCTAATGCTC
1 TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTC
103065806 CGATAAGCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (41 bp):
TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTTA
Found at i:103065845 original size:62 final size:62
Alignment explanation
Indices: 103065748--103065867 Score: 231
Period size: 62 Copynumber: 1.9 Consensus size: 62
103065738 ATTTTACCAA
*
103065748 AAGCGCCGCTAATGCTCTTATTTTTAGCGGTGTTTTACCAAAAGCGCCGCTAATGCTCCGAT
1 AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGAT
103065810 AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
1 AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
103065868 TTATTTTTAG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (62 bp):
AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGAT
Found at i:103065867 original size:41 final size:41
Alignment explanation
Indices: 103065810--103065926 Score: 182
Period size: 41 Copynumber: 2.9 Consensus size: 41
103065800 ATGCTCCGAT
103065810 AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAA
1 AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAA
* *
103065851 AAGCGCCGCTAATGCTCTTATTTTTAGTGACGTTTTACCAA
1 AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAA
* **
103065892 AAGCGCCGCTATTGCTC-TGCTTTTAGCGGCGTTTT
1 AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTT
103065927 TGGTAAAATG
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 14 0.20
41 55 0.80
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (41 bp):
AAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAA
Found at i:103070453 original size:14 final size:14
Alignment explanation
Indices: 103070434--103070463 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
103070424 ACTCAACAGA
103070434 AGCCCACCTAAGCT
1 AGCCCACCTAAGCT
103070448 AGCCCACCTAAGCT
1 AGCCCACCTAAGCT
103070462 AG
1 AG
103070464 TCCAATCCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.40, G:0.17, T:0.13
Consensus pattern (14 bp):
AGCCCACCTAAGCT
Found at i:103071708 original size:24 final size:25
Alignment explanation
Indices: 103071680--103071741 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 25
103071670 TACGTATATA
*
103071680 TATACATTTTTATACTA-TATTA-T
1 TATACATTTTTATAATATTATTAGT
*
103071703 GTATACATTCTTA-AATATTATTAGT
1 -TATACATTTTTATAATATTATTAGT
*
103071728 TATATATTTTTATA
1 TATACATTTTTATA
103071742 TTATCATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
23 3 0.10
24 26 0.84
25 2 0.06
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (25 bp):
TATACATTTTTATAATATTATTAGT
Done.