Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 317 of 344
Found at i:104062419 original size:11 final size:11
Alignment explanation
Indices: 104062342--104062425 Score: 50
Period size: 11 Copynumber: 7.3 Consensus size: 11
104062332 TAGTATAAAT
104062342 TAAT-AAATAA
1 TAATAAAATAA
104062352 TAA-ATAAA-AA
1 TAATA-AAATAA
*
104062362 TAACATAAATAA
1 TAATA-AAATAA
104062374 TAA-ATAAATAAA
1 TAATA-AAAT-AA
104062386 TAATAAAATTAA
1 TAATAAAA-TAA
*
104062398 CAATACGAAAATAA
1 TAAT---AAAATAA
104062412 TAATAAAATAA
1 TAATAAAATAA
104062423 TAA
1 TAA
104062426 AATTCAAAGT
Statistics
Matches: 62, Mismatches: 2, Indels: 19
0.75 0.02 0.23
Matches are distributed among these distances:
10 8 0.13
11 24 0.39
12 18 0.29
13 2 0.03
14 6 0.10
15 4 0.06
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.25
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:104062726 original size:29 final size:29
Alignment explanation
Indices: 104062671--104062726 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
104062661 ACAAGAATGC
* *
104062671 TTGATTTTATTGATTATGATTATGTTTAG
1 TTGATTTTATTGATTAAGATTAGGTTTAG
* *
104062700 TTGATTTTATTGCTTAAGTTTAGGTTT
1 TTGATTTTATTGATTAAGATTAGGTTT
104062727 TTAGATGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.21, C:0.02, G:0.18, T:0.59
Consensus pattern (29 bp):
TTGATTTTATTGATTAAGATTAGGTTTAG
Found at i:104072965 original size:21 final size:20
Alignment explanation
Indices: 104072908--104072969 Score: 81
Period size: 19 Copynumber: 3.0 Consensus size: 20
104072898 AATTATAAAT
104072908 TATTGATATTATTTAAATAATA
1 TATT-ATATT-TTTAAATAATA
*
104072930 TATTA-AATTTTAAATAATA
1 TATTATATTTTTAAATAATA
104072949 TATTATATTTTTAAAATAATA
1 TATTATATTTTT-AAATAATA
104072970 AAAATGAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
19 16 0.44
20 7 0.19
21 9 0.25
22 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TATTATATTTTTAAATAATA
Found at i:104074615 original size:22 final size:23
Alignment explanation
Indices: 104074590--104074633 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
104074580 AATCATTGTT
104074590 AAAA-AATATATGAATT-TAAATA
1 AAAATAAT-TATGAATTGTAAATA
*
104074612 AAAATAATTGTGAATTGTAAAT
1 AAAATAATTATGAATTGTAAAT
104074634 CTTGAAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (23 bp):
AAAATAATTATGAATTGTAAATA
Found at i:104076703 original size:21 final size:21
Alignment explanation
Indices: 104076648--104076756 Score: 101
Period size: 21 Copynumber: 5.2 Consensus size: 21
104076638 ATGCTTTGCT
* *
104076648 TTCTGTTTAGCTCTCACGAGC
1 TTCTGTTTAACTCTTACGAGC
* * * * *
104076669 TTTTATTCAGCTCTCACGAGC
1 TTCTGTTTAACTCTTACGAGC
* * * *
104076690 CTCTGGTTAACTCTTATGAGT
1 TTCTGTTTAACTCTTACGAGC
*
104076711 TTCTGTTTAGCTCTTACGAGC
1 TTCTGTTTAACTCTTACGAGC
*
104076732 TTCTGTTTAACTCTTATGAGC
1 TTCTGTTTAACTCTTACGAGC
104076753 TTCT
1 TTCT
104076757 CTTACGATAT
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 69 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.43
Consensus pattern (21 bp):
TTCTGTTTAACTCTTACGAGC
Found at i:104076724 original size:42 final size:42
Alignment explanation
Indices: 104076677--104076756 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
104076667 GCTTTTATTC
*
104076677 AGCTCTCACGAGCCTCTGGTTAACTCTTATGAGTTTCTGTTT
1 AGCTCTCACGAGCCTCTGGTTAACTCTTATGAGCTTCTGTTT
* * *
104076719 AGCTCTTACGAGCTTCTGTTTAACTCTTATGAGCTTCT
1 AGCTCTCACGAGCCTCTGGTTAACTCTTATGAGCTTCT
104076757 CTTACGATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.41
Consensus pattern (42 bp):
AGCTCTCACGAGCCTCTGGTTAACTCTTATGAGCTTCTGTTT
Found at i:104080581 original size:21 final size:21
Alignment explanation
Indices: 104080529--104080599 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
104080519 CTTTACTTTT
* *
104080529 TGTTCAGCTCTCACGAGCTTC
1 TGTTCAACTCTTACGAGCTTC
* *
104080550 TATTCAGCTCTTACGAGCTTC
1 TGTTCAACTCTTACGAGCTTC
* * *
104080571 TGTTTAACTCTTATGAGTTTC
1 TGTTCAACTCTTACGAGCTTC
104080592 TGTTCAAC
1 TGTTCAAC
104080600 AGACGAGCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.41
Consensus pattern (21 bp):
TGTTCAACTCTTACGAGCTTC
Found at i:104081358 original size:17 final size:17
Alignment explanation
Indices: 104081336--104081370 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
104081326 GACTTGAAAA
104081336 ATGGCCTATTTTCATCC
1 ATGGCCTATTTTCATCC
104081353 ATGGCCTATTTTCATCC
1 ATGGCCTATTTTCATCC
104081370 A
1 A
104081371 CACGGGTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.11, T:0.40
Consensus pattern (17 bp):
ATGGCCTATTTTCATCC
Found at i:104089158 original size:18 final size:18
Alignment explanation
Indices: 104089137--104089198 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
104089127 CTGTGTCTGC
**
104089137 ATCTGTATCTACATTTGA
1 ATCTGTATCTGTATTTGA
*
104089155 ATCT-TCATCTGTATCTGA
1 ATCTGT-ATCTGTATTTGA
*
104089173 AACTGTATCTGTATTTGA
1 ATCTGTATCTGTATTTGA
*
104089191 ATATGTAT
1 ATCTGTAT
104089199 ATTATATGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
17 1 0.03
18 33 0.94
19 1 0.03
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (18 bp):
ATCTGTATCTGTATTTGA
Found at i:104090937 original size:23 final size:23
Alignment explanation
Indices: 104090889--104090939 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
104090879 AAGTTTATTA
* * *
104090889 GAAAAATTGTCTGGTTTGAGAGT
1 GAAATATTGTCTGATTTGAGACT
104090912 GAAATATTGTCTAGATTTGA-ACT
1 GAAATATTGTCT-GATTTGAGACT
104090935 GAAAT
1 GAAAT
104090940 TAGAGTTGCG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (23 bp):
GAAATATTGTCTGATTTGAGACT
Found at i:104092099 original size:29 final size:29
Alignment explanation
Indices: 104092078--104092189 Score: 170
Period size: 29 Copynumber: 3.9 Consensus size: 29
104092068 TCACGCGGCT
** *
104092078 GTGTGGTAGCCCGTGTGGGTCACATGGCG
1 GTGTGGTAGCCCGTGTGGGTCACACAGCC
104092107 GTGTGGTAGCCCGTGTGGGTCACACAGCC
1 GTGTGGTAGCCCGTGTGGGTCACACAGCC
104092136 GTGTGGTAGCCCGTGTGGGTCACACAGCC
1 GTGTGGTAGCCCGTGTGGGTCACACAGCC
* **
104092165 GTGTGGTAGACTATGTGGGTCACAC
1 GTGTGGTAGCCCGTGTGGGTCACAC
104092190 GACCATGTAG
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 77 1.00
ACGTcount: A:0.14, C:0.23, G:0.39, T:0.23
Consensus pattern (29 bp):
GTGTGGTAGCCCGTGTGGGTCACACAGCC
Found at i:104092139 original size:17 final size:17
Alignment explanation
Indices: 104092117--104092170 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
104092107 GTGTGGTAGC
104092117 CCGTGTGGGTCACACAG
1 CCGTGTGGGTCACACAG
*
104092134 CCGTGT-GGT-A-GC--
1 CCGTGTGGGTCACACAG
104092146 CCGTGTGGGTCACACAG
1 CCGTGTGGGTCACACAG
104092163 CCGTGTGG
1 CCGTGTGG
104092171 TAGACTATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
12 6 0.20
13 3 0.10
14 2 0.07
15 2 0.07
16 3 0.10
17 14 0.47
ACGTcount: A:0.13, C:0.28, G:0.39, T:0.20
Consensus pattern (17 bp):
CCGTGTGGGTCACACAG
Found at i:104093951 original size:33 final size:33
Alignment explanation
Indices: 104093914--104093981 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
104093904 AAGTAAACAT
*
104093914 AACTAATCTAAAAAAAGAAAAAAAATAAA-AGTA
1 AACTAATCTAAAAAAA-AAAAAAAAGAAAGAGTA
* **
104093947 AACTAATTTAAAGTAAAAAAAAAAGAAAGAGTA
1 AACTAATCTAAAAAAAAAAAAAAAGAAAGAGTA
104093980 AA
1 AA
104093982 AGAGCAATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 11 0.37
33 19 0.63
ACGTcount: A:0.71, C:0.04, G:0.09, T:0.16
Consensus pattern (33 bp):
AACTAATCTAAAAAAAAAAAAAAAGAAAGAGTA
Found at i:104095401 original size:2 final size:2
Alignment explanation
Indices: 104095396--104095429 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
104095386 TTCAATGTGT
104095396 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
104095430 ATTAATAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:104098819 original size:23 final size:22
Alignment explanation
Indices: 104098767--104098819 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
104098757 TCCACGTCTT
*
104098767 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
104098789 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
104098812 TTTCTTTT
1 TTTCTTTT
104098820 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:104102299 original size:16 final size:16
Alignment explanation
Indices: 104102280--104102310 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
104102270 CCTAAACTAA
*
104102280 TAAAGTAATAAATTAT
1 TAAACTAATAAATTAT
104102296 TAAACTAATAAATTA
1 TAAACTAATAAATTA
104102311 ATACATAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (16 bp):
TAAACTAATAAATTAT
Found at i:104103472 original size:22 final size:22
Alignment explanation
Indices: 104103442--104103485 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
104103432 ATTGTTAAAA
104103442 TACGCTGATGTGGCATTGACAT
1 TACGCTGATGTGGCATTGACAT
* *
104103464 TACGTTGATGTGGCATTTACAT
1 TACGCTGATGTGGCATTGACAT
104103486 GACATTAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (22 bp):
TACGCTGATGTGGCATTGACAT
Found at i:104104129 original size:18 final size:18
Alignment explanation
Indices: 104104106--104104151 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
104104096 TCAATAGTGA
104104106 AAAAAAAATACTGAAAAC-
1 AAAAAAAATA-TGAAAACG
104104124 AAAAAAAAGT-TGAAAACG
1 AAAAAAAA-TATGAAAACG
104104142 AAAAAAAATA
1 AAAAAAAATA
104104152 AAATATAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 8 0.32
18 16 0.64
19 1 0.04
ACGTcount: A:0.74, C:0.07, G:0.09, T:0.11
Consensus pattern (18 bp):
AAAAAAAATATGAAAACG
Found at i:104104492 original size:26 final size:27
Alignment explanation
Indices: 104104463--104104521 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
104104453 TATTTGTTAG
104104463 TTATTAATATTGTTAGT-AAAAAACCC
1 TTATTAATATTGTTAGTAAAAAAACCC
*
104104489 TTATTATTATTGTTAGTAAAAAAACCC
1 TTATTAATATTGTTAGTAAAAAAACCC
*
104104516 TAATTA
1 TTATTA
104104522 TTGTTAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (27 bp):
TTATTAATATTGTTAGTAAAAAAACCC
Found at i:104104521 original size:27 final size:26
Alignment explanation
Indices: 104104465--104104523 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 26
104104455 TTTGTTAGTT
* *
104104465 ATTAATATTGTTAGTAAAAAACCCTT
1 ATTATTATTGTTAGTAAAAAACCCTA
104104491 ATTATTATTGTTAGTAAAAAAACCCTA
1 ATTATTATTGTTAGT-AAAAAACCCTA
104104518 ATTATT
1 ATTATT
104104524 GTTAGTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (26 bp):
ATTATTATTGTTAGTAAAAAACCCTA
Found at i:104108829 original size:149 final size:150
Alignment explanation
Indices: 104108638--104109174 Score: 798
Period size: 149 Copynumber: 3.6 Consensus size: 150
104108628 AGGATTCTAA
104108638 GCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA
1 GCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA
* *
104108703 TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTACTTAAGTGTTTTTTATATTAATTT
66 TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAATTT
104108768 AATAAATAACCTTGATTTTG
131 AATAAATAACCTTGATTTTG
* * * *
104108788 GCACTTTCTTCGTA-TTTTTTATTTTCGTATCTTATTCTTTAAAATATATTATTTTCGTATTTTA
1 GCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA
*** * *
104108852 TTTCTTTATATTATTTTAGTTCATAATGTTTCAAATGTATTATTTAAGTATTTTTTAT-TT-TTT
66 TTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAATT
*
104108915 TAATAAATAACCCTTG-TTTTA
130 TAATAAATAA-CCTTGATTTTG
*
104108936 GCACTTTATTCATA-TTTTTTATTTTCATATATTATTTTTTAAAATATATTATTTTCGTATTTTA
1 GCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA
*
104109000 -TTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTT
66 TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAATTT
* *
104109064 AATAAATAACCCTGACTTTG
131 AATAAATAACCTTGATTTTG
* * * * * * *
104109084 GTACCTTGTTCATATTTTTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCATATTTTA
1 GCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA
104109149 TTTTTTTATATTATTTTAGCAAAAAA
66 -TTTTTTATATTATTTTAGCAAAAAA
104109175 ATCGTCAGCA
Statistics
Matches: 345, Mismatches: 34, Indels: 15
0.88 0.09 0.04
Matches are distributed among these distances:
146 49 0.14
147 8 0.02
148 101 0.29
149 103 0.30
150 60 0.17
151 24 0.07
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (150 bp):
GCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA
TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAATTT
AATAAATAACCTTGATTTTG
Found at i:104108975 original size:15 final size:16
Alignment explanation
Indices: 104108944--104109001 Score: 50
Period size: 15 Copynumber: 3.8 Consensus size: 16
104108934 TAGCACTTTA
*
104108944 TTCATAT-TTTTTATT
1 TTCATATATTATTATT
104108959 TTCATATATTATT-TT
1 TTCATATATTATTATT
* *
104108974 TTAAAATA-TATTATT
1 TTCATATATTATTATT
* *
104108989 TTCGTATTTTATT
1 TTCATATATTATT
104109002 TTTATATTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
14 4 0.12
15 21 0.64
16 8 0.24
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (16 bp):
TTCATATATTATTATT
Found at i:104108979 original size:148 final size:151
Alignment explanation
Indices: 104108637--104109174 Score: 795
Period size: 148 Copynumber: 3.6 Consensus size: 151
104108627 AAGGATTCTA
104108637 AGCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTT
1 AGCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTT
* *
104108702 ATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTACTTAAGTGTTTTTTATATTAATT
66 ATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAATT
104108767 TAATAAATAA-CCTTGATTTT
131 TAATAAATAACCCTTGATTTT
* * * * *
104108787 GGCACTTTCTTCGTA-TTTTTTATTTTCGTATCTTATTCTTTAAAATATATTATTTTCGTATTTT
1 AGCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTT
*** * *
104108851 ATTTCTTTATATTATTTTAGTTCATAATGTTTCAAATGTATTATTTAAGTATTTTTTAT-TT-TT
66 ATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAAT
104108914 TTAATAAATAACCCTTG-TTTT
130 TTAATAAATAACCCTTGATTTT
*
104108935 AGCACTTTATTCATA-TTTTTTATTTTCATATATTATTTTTTAAAATATATTATTTTCGTATTTT
1 AGCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTT
*
104108999 A-TTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATT
66 ATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAATT
*
104109063 TAATAAATAACCC-TGACTTT
131 TAATAAATAACCCTTGATTTT
* * * * * * * *
104109083 GGTACCTTGTTCATATTTTTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCATATTTT
1 AGCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTT
104109148 ATTTTTTTATATTATTTTAGCAAAAAA
66 A-TTTTTTATATTATTTTAGCAAAAAA
104109175 ATCGTCAGCA
Statistics
Matches: 346, Mismatches: 34, Indels: 15
0.88 0.09 0.04
Matches are distributed among these distances:
146 49 0.14
147 6 0.02
148 104 0.30
149 103 0.30
150 60 0.17
151 24 0.07
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (151 bp):
AGCACTTTATTCATATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTT
ATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAATT
TAATAAATAACCCTTGATTTT
Found at i:104109754 original size:3 final size:3
Alignment explanation
Indices: 104109738--104109807 Score: 65
Period size: 3 Copynumber: 24.0 Consensus size: 3
104109728 TCCTCCTCCC
* * *
104109738 CTT CTT TTT CCTT CTT CTT CTT C-T CTT CTT -TC CTT CTT CTC CTT
1 CTT CTT CTT -CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* *
104109782 CTT -TT CTT TTT CTT CTT CTC CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT
104109808 TGTTCCCGAA
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 5 0.09
3 46 0.87
4 2 0.04
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:104109772 original size:22 final size:22
Alignment explanation
Indices: 104109740--104109808 Score: 85
Period size: 22 Copynumber: 3.4 Consensus size: 22
104109730 CTCCTCCCCT
104109740 TCTT-TTTCCTTCTTCTTCTTC
1 TCTTCTTTCCTTCTTCTTCTTC
*
104109761 TCTTCTTTCCTTCTTCTCCTTC
1 TCTTCTTTCCTTCTTCTTCTTC
*
104109783 TTTTCTTT--TTCTTCTTC-TC
1 TCTTCTTTCCTTCTTCTTCTTC
104109802 -CTTCTTT
1 TCTTCTTT
104109809 GTTCCCGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
18 6 0.14
19 2 0.05
20 8 0.19
21 4 0.09
22 23 0.53
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (22 bp):
TCTTCTTTCCTTCTTCTTCTTC
Found at i:104127719 original size:10 final size:9
Alignment explanation
Indices: 104127689--104127746 Score: 56
Period size: 7 Copynumber: 7.0 Consensus size: 9
104127679 TATTAATATT
104127689 TAAATAAAA
1 TAAATAAAA
104127698 TAAAATAAAA
1 T-AAATAAAA
104127708 T-AAT-AAA
1 TAAATAAAA
104127715 T-AAT-AAA
1 TAAATAAAA
104127722 T-AATAAAA
1 TAAATAAAA
*
104127730 GAAA-AAAA
1 TAAATAAAA
104127738 TAAATAAAA
1 TAAATAAAA
104127747 AGAAAAAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
7 14 0.33
8 13 0.30
9 7 0.16
10 9 0.21
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.21
Consensus pattern (9 bp):
TAAATAAAA
Found at i:104127740 original size:16 final size:18
Alignment explanation
Indices: 104127694--104127753 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 18
104127684 ATATTTAAAT
104127694 AAAATAAAATAAAATA-ATAA
1 AAAAT-AAATAAAA-AGA-AA
*
104127714 ATAATAAATAATAAAAGAAA
1 AAAATAAAT-A-AAAAGAAA
104127734 AAAATAAATAAAAAGAAA
1 AAAATAAATAAAAAGAAA
104127752 AA
1 AA
104127754 GAAAGATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
18 10 0.29
19 5 0.14
20 16 0.46
21 4 0.11
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (18 bp):
AAAATAAATAAAAAGAAA
Found at i:104131533 original size:27 final size:26
Alignment explanation
Indices: 104131503--104131564 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
104131493 AGATAATTAA
104131503 AATAAAATCCTAAAT-TTGAATAATCCT
1 AATAAAAT-CTAAATATT-AATAATCCT
* * *
104131530 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCTAAATATTAATAATCCT
104131557 AATAAAAT
1 AATAAAAT
104131565 AAAATAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 23 0.79
28 4 0.14
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (26 bp):
AATAAAATCTAAATATTAATAATCCT
Found at i:104136830 original size:22 final size:22
Alignment explanation
Indices: 104136805--104136850 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
104136795 GAAAAGAGCA
104136805 AAACGAAAGCAAGGGAAAGGAG
1 AAACGAAAGCAAGGGAAAGGAG
**
104136827 AAACGGCAGCAAGGGAAAGGAG
1 AAACGAAAGCAAGGGAAAGGAG
104136849 AA
1 AA
104136851 GAAAACGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.52, C:0.11, G:0.37, T:0.00
Consensus pattern (22 bp):
AAACGAAAGCAAGGGAAAGGAG
Found at i:104141486 original size:23 final size:23
Alignment explanation
Indices: 104141456--104141503 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
104141446 TCAAGAAAAC
104141456 ACAATATTTATATATCATCATTT
1 ACAATATTTATATATCATCATTT
104141479 ACAATATTTATATATCATCATTT
1 ACAATATTTATATATCATCATTT
104141502 AC
1 AC
104141504 CATTCTCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (23 bp):
ACAATATTTATATATCATCATTT
Found at i:104143235 original size:13 final size:13
Alignment explanation
Indices: 104143217--104143244 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
104143207 TTATCATATG
104143217 TTTATAGTTAATT
1 TTTATAGTTAATT
104143230 TTTATAGTTAATT
1 TTTATAGTTAATT
104143243 TT
1 TT
104143245 AATCATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (13 bp):
TTTATAGTTAATT
Found at i:104143338 original size:13 final size:13
Alignment explanation
Indices: 104143320--104143347 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
104143310 TATTACTATA
104143320 TTTATAGTTAATT
1 TTTATAGTTAATT
104143333 TTTATAGTTAATT
1 TTTATAGTTAATT
104143346 TT
1 TT
104143348 AATCATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (13 bp):
TTTATAGTTAATT
Found at i:104144557 original size:16 final size:16
Alignment explanation
Indices: 104144525--104144558 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
104144515 TACACAAATC
*
104144525 AAAGAATTATTAGAAA
1 AAAGAATTAATAGAAA
104144541 AAAG-ATTAATAGAAA
1 AAAGAATTAATAGAAA
104144556 AAA
1 AAA
104144559 CTAATAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.21
Consensus pattern (16 bp):
AAAGAATTAATAGAAA
Found at i:104153763 original size:15 final size:15
Alignment explanation
Indices: 104153743--104153772 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
104153733 ATCCAAAAAA
*
104153743 TTCTATTTCTGTTTT
1 TTCTATTTCTATTTT
104153758 TTCTATTTCTATTTT
1 TTCTATTTCTATTTT
104153773 CTTAGGACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.73
Consensus pattern (15 bp):
TTCTATTTCTATTTT
Found at i:104160057 original size:28 final size:29
Alignment explanation
Indices: 104160021--104160075 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
104160011 ATTTATTAGA
104160021 GTTAAGTGG-ATGATTT-AGGGTTTAAATG
1 GTTAAGTGGAATGATTTCA-GGTTTAAATG
*
104160049 GTTAGGTGGAATGATTTCAGGTTTAAA
1 GTTAAGTGGAATGATTTCAGGTTTAAA
104160076 ATAAATGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 15 0.62
30 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.31, T:0.38
Consensus pattern (29 bp):
GTTAAGTGGAATGATTTCAGGTTTAAATG
Found at i:104160623 original size:29 final size:29
Alignment explanation
Indices: 104160571--104160637 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
104160561 AGGTGGTTTT
* *
104160571 GGGTTTTAATGATTAGGTAAGATGGCTCG
1 GGGTTTAAATGATTAGGAAAGATGGCTCG
* *
104160600 GGGTTTAAATGATTA-GAAAGGATGGTTTG
1 GGGTTTAAATGATTAGGAAA-GATGGCTCG
104160629 GGGTTTAAA
1 GGGTTTAAA
104160638 ATTAAATGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.03, G:0.34, T:0.34
Consensus pattern (29 bp):
GGGTTTAAATGATTAGGAAAGATGGCTCG
Found at i:104161872 original size:16 final size:16
Alignment explanation
Indices: 104161851--104161919 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
104161841 TTTGGTTCGC
104161851 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
104161867 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
104161883 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
104161900 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
104161916 TGTA
1 TGTA
104161920 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:104161897 original size:33 final size:32
Alignment explanation
Indices: 104161851--104161919 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
104161841 TTTGGTTCGC
104161851 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
104161883 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
104161916 TGTA
1 TGTA
104161920 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:104161984 original size:44 final size:45
Alignment explanation
Indices: 104161900--104161990 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
104161890 GGATTAGAGG
* * *
104161900 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
104161945 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
104161989 TG
1 TG
104161991 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:104162186 original size:7 final size:7
Alignment explanation
Indices: 104162174--104162200 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
104162164 AATTAAAATA
104162174 TATAATT
1 TATAATT
104162181 TATAATT
1 TATAATT
104162188 TATAATT
1 TATAATT
104162195 TATAAT
1 TATAAT
104162201 AAATTTTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATAATT
Found at i:104167215 original size:18 final size:16
Alignment explanation
Indices: 104167192--104167225 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
104167182 AGTAAAATAT
104167192 AAATTACAAACATAAAAA
1 AAATTA-AAACA-AAAAA
104167210 AAATTAAAACAAAAAA
1 AAATTAAAACAAAAAA
104167226 CTCCAACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (16 bp):
AAATTAAAACAAAAAA
Found at i:104167225 original size:17 final size:18
Alignment explanation
Indices: 104167192--104167225 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
104167182 AGTAAAATAT
*
104167192 AAATTACAAACATAAAAA
1 AAATTACAAACAAAAAAA
104167210 AAATTA-AAACAAAAAA
1 AAATTACAAACAAAAAA
104167226 CTCCAACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (18 bp):
AAATTACAAACAAAAAAA
Found at i:104167462 original size:26 final size:25
Alignment explanation
Indices: 104167432--104167491 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
104167422 TACAAAACAA
*
104167432 AAAATATAATC-ATAAATATTAAATAT
1 AAAATATAA-CAAT-AATATAAAATAT
*
104167458 AAAATATAACAATAATGTAAAATAT
1 AAAATATAACAATAATATAAAATAT
104167483 AAACATATA
1 AAA-ATATA
104167492 TTTAATATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 14 0.47
26 16 0.53
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAATATAACAATAATATAAAATAT
Found at i:104168841 original size:20 final size:20
Alignment explanation
Indices: 104168818--104168869 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
104168808 AAAAACAGAG
*
104168818 GCACAGAAGTGTAAACAAGA
1 GCACAGAAGTGCAAACAAGA
* *
104168838 GCACCA-AAGTGCAAACAGGG
1 GCA-CAGAAGTGCAAACAAGA
*
104168858 GCACCGAAGTGC
1 GCACAGAAGTGC
104168870 GAACTTGTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 23 0.88
21 2 0.08
ACGTcount: A:0.40, C:0.23, G:0.29, T:0.08
Consensus pattern (20 bp):
GCACAGAAGTGCAAACAAGA
Found at i:104171010 original size:13 final size:13
Alignment explanation
Indices: 104170992--104171017 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104170982 AATGGCATAT
104170992 TATTCAACCTCAA
1 TATTCAACCTCAA
104171005 TATTCAACCTCAA
1 TATTCAACCTCAA
104171018 GAAGAAAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (13 bp):
TATTCAACCTCAA
Found at i:104173739 original size:32 final size:32
Alignment explanation
Indices: 104173681--104173753 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
104173671 ATCCTAATTC
*
104173681 TAAAAAAATTCAAAGAAATATATAAAAATAAA
1 TAAAAAAATTCAAAGAAATATATAAAAACAAA
* * *
104173713 TAAATAAATTTAAA-AATATATCTAAAAACAAA
1 TAAAAAAATTCAAAGAA-ATATATAAAAACAAA
104173745 -AAAAAAATT
1 TAAAAAAATT
104173754 ATTGTTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 10 0.29
32 25 0.71
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.25
Consensus pattern (32 bp):
TAAAAAAATTCAAAGAAATATATAAAAACAAA
Found at i:104174777 original size:27 final size:26
Alignment explanation
Indices: 104174725--104174777 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
104174715 TCATAAGTAT
* *
104174725 TTTAAATTTCTATTTTGTTTCCTTAA
1 TTTAAATTTCTATTTTATTTCATTAA
*
104174751 TTTAAATATTCTATTTTATTTTATTAA
1 TTTAAAT-TTCTATTTTATTTCATTAA
104174778 CTCTAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (26 bp):
TTTAAATTTCTATTTTATTTCATTAA
Found at i:104174909 original size:13 final size:13
Alignment explanation
Indices: 104174891--104174918 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
104174881 TCAATGACAT
104174891 AATATTCAAGCTC
1 AATATTCAAGCTC
104174904 AATATTCAAGCTC
1 AATATTCAAGCTC
104174917 AA
1 AA
104174919 GAGGAAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (13 bp):
AATATTCAAGCTC
Found at i:104177992 original size:45 final size:44
Alignment explanation
Indices: 104177926--104178020 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
104177916 GGATTAGAGG
* * *
104177926 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
104177971 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
104178015 TGTAAT
1 TGTAAT
104178021 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:104178203 original size:18 final size:17
Alignment explanation
Indices: 104178182--104178216 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
104178172 TTATTATTTA
*
104178182 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
104178200 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
104178217 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:104178210 original size:28 final size:27
Alignment explanation
Indices: 104178140--104178212 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
104178130 TTTATTATCA
*
104178140 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
104178168 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
104178195 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
104178213 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:104178350 original size:18 final size:17
Alignment explanation
Indices: 104178329--104178363 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
104178319 TTATTATTAA
*
104178329 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
104178347 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
104178364 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:104178375 original size:147 final size:149
Alignment explanation
Indices: 104178101--104178375 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
104178091 ATGATTATTG
*
104178101 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
104178166 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
104178231 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
* *
104178250 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTACTCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
104178313 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
104178376 ATATTCTTAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 94 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:104178444 original size:147 final size:147
Alignment explanation
Indices: 104178119--104178456 Score: 341
Period size: 147 Copynumber: 2.3 Consensus size: 147
104178109 ATTTAAATTT
* * *
104178119 TAATAAGATTATTTATTATCAAA-AATAAATAATTTAATCATATTTAAACATAATTATTATTTAA
1 TAATAAGATTA-TAAATAT-AAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAA
* * * * **
104178183 TATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTA
64 TATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTA
* ** * * *
104178248 AATTATTTTATTTAAATTT
129 AATCATAATATTGAAACTG
* * *
104178267 TAATAAGATTATTAATATCAATAATAAATAATTTACTCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATAAATATAAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
* **
104178332 TATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACT
66 TATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT
*
104178397 CAAATCATAATATATGATACTG
128 -AAATCATAATAT-TGAAACTG
*
104178419 T-A-AA-A-TATAAAT-TAAAATAAT-AATAATTAAAT-ATATTT
1 TAATAAGATTATAAATAT-AAATAATAAATAATTTAATCATATTT
104178457 TAATTAAAAT
Statistics
Matches: 159, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
146 8 0.05
147 102 0.64
148 23 0.14
149 5 0.03
150 6 0.04
151 10 0.06
152 5 0.03
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (147 bp):
TAATAAGATTATAAATATAAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
TATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAA
TCATAATATTGAAACTG
Found at i:104178470 original size:18 final size:17
Alignment explanation
Indices: 104178431--104178483 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
104178421 AAATATAAAT
104178431 TAAAATA-ATAA--TAA
1 TAAAATATATAATTTAA
*
104178445 TTAAATATAT--TTTAA
1 TAAAATATATAATTTAA
104178460 TTAAAATATATAATTTAA
1 -TAAAATATATAATTTAA
104178478 TAAAAT
1 TAAAAT
104178484 TCTAATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
14 6 0.19
15 5 0.16
16 9 0.29
17 6 0.19
18 5 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAAATATATAATTTAA
Found at i:104178535 original size:119 final size:119
Alignment explanation
Indices: 104178309--104178603 Score: 484
Period size: 119 Copynumber: 2.5 Consensus size: 119
104178299 TTACTCATAT
*
104178309 TTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTAAA-ATAA-TAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
104178374 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA
64 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
104178430 TTAAAATAATAATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC-TAATAATC
1 TTAAAATAATAAT-ATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
*
104178494 AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAT
65 AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
* *
104178549 TTGAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTAAAATAA-TAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
104178604 TAAAATAATT
Statistics
Matches: 165, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
119 110 0.67
120 50 0.30
121 5 0.03
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (119 bp):
TTAAAATAATAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
ATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
Found at i:104185525 original size:17 final size:17
Alignment explanation
Indices: 104185505--104185542 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
104185495 CTTCACATTA
104185505 TATCTAGTATCACCTGG
1 TATCTAGTATCACCTGG
104185522 TATCTAGTATCACCTGG
1 TATCTAGTATCACCTGG
104185539 -ATCT
1 TATCT
104185543 GATCCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (17 bp):
TATCTAGTATCACCTGG
Found at i:104190863 original size:18 final size:18
Alignment explanation
Indices: 104190840--104190893 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
104190830 CCACCACCAA
104190840 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
104190858 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
104190870 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
104190888 CTCCAC
1 CTCCAC
104190894 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 1 0.04
16 1 0.04
17 3 0.11
18 13 0.46
ACGTcount: A:0.24, C:0.50, G:0.07, T:0.19
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:104190866 original size:30 final size:30
Alignment explanation
Indices: 104190830--104190898 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
104190820 CTAGCCTTTG
104190830 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
104190860 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
104190890 CCACCACCA
1 CCACCACCA
104190899 CTTGTACCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.28, C:0.52, G:0.06, T:0.14
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:104195435 original size:73 final size:73
Alignment explanation
Indices: 104195338--104195856 Score: 758
Period size: 73 Copynumber: 7.1 Consensus size: 73
104195328 TGATGTTTTT
* * ** * * *
104195338 ATTTCTATTT-TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
104195402 TAATTTCA
66 TAATTTCA
*
104195410 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
104195475 TAATTTCA
66 TAATTTCA
* *
104195483 ATTTCTGTTTGTCAAAACA-CAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACGCTGAG
1 ATTTCTGTTTGTCAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
104195547 GTAATTTCA
65 GTAATTTCA
*
104195556 ATTTCTGCTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
104195621 TAATTTCA
66 TAATTTCA
* ** *
104195629 ATTTCTGTTTGTC-AAAATACAGCTCATATTGTAAGAGGTGAGTTGAGCCTCAAGGCACGCTGAG
1 ATTTCTGTTTGTCAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
104195693 GTAATTTCA
65 GTAATTTCA
*
104195702 ATTTCTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
**
104195767 TGCTTTTCA
66 T-AATTTCA
* * *
104195776 AGTTCTGCTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTG
1 ATTTCTG-TTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTG
*
104195840 AGGTATTTTCA
63 AGGTAATTTCA
104195851 ATTTCT
1 ATTTCT
104195857 ATTTTTTCAA
Statistics
Matches: 408, Mismatches: 30, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
72 15 0.04
73 310 0.76
74 19 0.05
75 14 0.03
76 50 0.12
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (73 bp):
ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
TAATTTCA
Found at i:104195880 original size:14 final size:15
Alignment explanation
Indices: 104195845--104195877 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
104195835 TGCTGAGGTA
*
104195845 TTTTCAATTTCTATT
1 TTTTCAATTTATATT
104195860 TTTTCAATTTATATT
1 TTTTCAATTTATATT
104195875 TTT
1 TTT
104195878 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTATATT
Found at i:104195921 original size:88 final size:88
Alignment explanation
Indices: 104195791--104196004 Score: 351
Period size: 88 Copynumber: 2.4 Consensus size: 88
104195781 TGCTTTTCAA
* *
104195791 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
104195856 TA-TTTTTTCAATTTATATTTTTC
66 TATTTTTTTCAATTTATA-TTTTC
*
104195879 AAAAATCAACTCATATTGCGAGAAGTGAGTTTAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
104195944 TATTTTTTTCAATTTATATTTTC
66 TATTTTTTTCAATTTATATTTTC
* *
104195967 AAAAATTAATTCATATTGCGAG-AGATGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTC
104196005 GGGGCACATG
Statistics
Matches: 118, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
87 2 0.02
88 101 0.86
89 15 0.13
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TATTTTTTTCAATTTATATTTTC
Found at i:104195954 original size:16 final size:16
Alignment explanation
Indices: 104195933--104195965 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
104195923 CGCTGAGGTA
*
104195933 TTTTCAATTTCTATTT
1 TTTTCAATTTATATTT
104195949 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
104195965 T
1 T
104195966 CAAAAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:104196870 original size:30 final size:30
Alignment explanation
Indices: 104196834--104196932 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
104196824 CTAGCCTTTG
104196834 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
104196864 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
104196894 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
104196924 CCACCACCA
1 CCACCACCA
104196933 CTTGTACCTA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:104198449 original size:13 final size:13
Alignment explanation
Indices: 104198433--104198485 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
104198423 TTTAAATTAA
104198433 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
* *
104198446 ACTTCTTAAAAGT
1 ACTTTTTAAAAGC
104198459 A-TTTTTCCAAAA-C
1 ACTTTTT--AAAAGC
104198472 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
104198485 A
1 A
104198486 TTGTCAAACT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 8 0.25
13 15 0.47
14 9 0.28
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.38
Consensus pattern (13 bp):
ACTTTTTAAAAGC
Found at i:104199498 original size:15 final size:15
Alignment explanation
Indices: 104199478--104199510 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
104199468 TATATATATA
104199478 TTATAT-TTTTAGATT
1 TTATATATTTTA-ATT
104199493 TTATATATTTTAATT
1 TTATATATTTTAATT
104199508 TTA
1 TTA
104199511 AAATGATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTATATATTTTAATT
Found at i:104204570 original size:46 final size:46
Alignment explanation
Indices: 104204518--104204831 Score: 414
Period size: 46 Copynumber: 6.8 Consensus size: 46
104204508 AGTGTGCTCT
*
104204518 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
104204564 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
104204610 GTGATATGAAATGTGTAAGACGATGGTTAAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
104204656 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
104204702 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
104204748 ATGACGGGAAAATGAATAAGACAATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
104204795 ATGACA-GAAAACGTGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC
104204832 TATGACATCA
Statistics
Matches: 244, Mismatches: 23, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
46 203 0.83
47 41 0.17
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:104211417 original size:18 final size:18
Alignment explanation
Indices: 104211394--104211430 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
104211384 TACCTAGCTT
*
104211394 TCAATATCAATACCAAAA
1 TCAATATCAACACCAAAA
*
104211412 TCAATATCGACACCAAAA
1 TCAATATCAACACCAAAA
104211430 T
1 T
104211431 TGAAACACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.24, G:0.03, T:0.22
Consensus pattern (18 bp):
TCAATATCAACACCAAAA
Found at i:104214539 original size:22 final size:24
Alignment explanation
Indices: 104214509--104214554 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
104214499 ACCAAAAAAG
*
104214509 AAATAGAAC-TGACGTCACGATGA
1 AAATAGAACACGACGTCACGATGA
*
104214532 AAAT-GAACACGACGTCATGATGA
1 AAATAGAACACGACGTCACGATGA
104214555 CGCAACGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (24 bp):
AAATAGAACACGACGTCACGATGA
Found at i:104216268 original size:49 final size:49
Alignment explanation
Indices: 104216215--104216311 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
104216205 TGAAATATGT
* * *
104216215 ATTGATTAATGGAATCTGGAATCAGACCAAAGAATGATTTATGAATAAA
1 ATTGATTAATGGAATCTAGAATCAAACCAAAGAATGATTCATGAATAAA
104216264 ATTGATTAATGGAATCTAGAATCAAACCAAAGAATGATTCATGAATAA
1 ATTGATTAATGGAATCTAGAATCAAACCAAAGAATGATTCATGAATAA
104216312 GTCAACTAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.28
Consensus pattern (49 bp):
ATTGATTAATGGAATCTAGAATCAAACCAAAGAATGATTCATGAATAAA
Found at i:104217044 original size:16 final size:17
Alignment explanation
Indices: 104217014--104217049 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
104217004 TCAGAAAACT
104217014 AAAAGTCTTCCAGTTTC
1 AAAAGTCTTCCAGTTTC
*
104217031 AAAA-TCTTCTAGTTTC
1 AAAAGTCTTCCAGTTTC
104217047 AAA
1 AAA
104217050 GTCCAAGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (17 bp):
AAAAGTCTTCCAGTTTC
Found at i:104225196 original size:18 final size:18
Alignment explanation
Indices: 104225175--104225209 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
104225165 ATTATACTTT
*
104225175 TTTATAAAATTATTAAAA
1 TTTATAAAAATATTAAAA
104225193 TTTATAAAAATATTAAA
1 TTTATAAAAATATTAAA
104225210 TAAATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTATAAAAATATTAAAA
Found at i:104225223 original size:22 final size:21
Alignment explanation
Indices: 104225190--104225231 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
104225180 AAAATTATTA
* *
104225190 AAATTTATAAAAATATTAAAT
1 AAATTTAAAAAAATAATAAAT
104225211 AAATTTAAAAAAAATAATAAA
1 AAATTT-AAAAAAATAATAAA
104225232 AAACCATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATTTAAAAAAATAATAAAT
Found at i:104225867 original size:11 final size:11
Alignment explanation
Indices: 104225851--104225891 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
104225841 TAAATAAATT
104225851 TAATATTTTAA
1 TAATATTTTAA
104225862 TAATATTTTAA
1 TAATATTTTAA
104225873 -AAT-TTTATAA
1 TAATATTT-TAA
*
104225883 AAATATTTT
1 TAATATTTT
104225892 TAAAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 3 0.11
10 6 0.22
11 15 0.56
12 3 0.11
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TAATATTTTAA
Found at i:104225897 original size:13 final size:14
Alignment explanation
Indices: 104225875--104225905 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
104225865 TATTTTAAAA
104225875 TTTTATAAAAATAT
1 TTTTATAAAAATAT
104225889 TTTTA-AAAAATAT
1 TTTTATAAAAATAT
104225902 TTTT
1 TTTT
104225906 TTAATTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTTATAAAAATAT
Found at i:104231942 original size:2 final size:2
Alignment explanation
Indices: 104231935--104231975 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
104231925 TTTATTGGTT
104231935 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
104231976 ATCTTTCTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:104240338 original size:28 final size:27
Alignment explanation
Indices: 104240286--104240341 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
104240276 AAATTCGACT
*
104240286 TTTTAAAAAATAAAATACAATAAAATA
1 TTTTAAAAAATAAAATACAAAAAAATA
* *
104240313 TTTTAAAAAATAAATTGATAAAAAAATA
1 TTTTAAAAAATAAAAT-ACAAAAAAATA
104240341 T
1 T
104240342 AAATATTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (27 bp):
TTTTAAAAAATAAAATACAAAAAAATA
Found at i:104246245 original size:26 final size:26
Alignment explanation
Indices: 104246216--104246270 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
104246206 TCTTTCTAAA
104246216 AAATGATA-ATTAACATTTCCAACGCC
1 AAAT-ATATATTAACATTTCCAACGCC
* *
104246242 AAATTTATATTAACATTTCCAATGCC
1 AAATATATATTAACATTTCCAACGCC
104246268 AAA
1 AAA
104246271 CTTTGATATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (26 bp):
AAATATATATTAACATTTCCAACGCC
Found at i:104246287 original size:26 final size:26
Alignment explanation
Indices: 104246224--104246279 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
104246214 AAAAATGATA
104246224 ATTAACATTTCCAACGCCAAATTTAT
1 ATTAACATTTCCAACGCCAAATTTAT
*
104246250 ATTAACATTTCCAATGCCAAACTTTGAT
1 ATTAACATTTCCAACGCCAAA-TTT-AT
104246278 AT
1 AT
104246280 GCATTTCCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 20 0.74
27 3 0.11
28 4 0.15
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (26 bp):
ATTAACATTTCCAACGCCAAATTTAT
Found at i:104249598 original size:14 final size:14
Alignment explanation
Indices: 104249579--104249607 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
104249569 TAAAGCTCTG
104249579 TTTGGTTGCGGCGT
1 TTTGGTTGCGGCGT
104249593 TTTGGTTGCGGCGT
1 TTTGGTTGCGGCGT
104249607 T
1 T
104249608 CGCTACTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.41, T:0.45
Consensus pattern (14 bp):
TTTGGTTGCGGCGT
Found at i:104256139 original size:34 final size:34
Alignment explanation
Indices: 104256096--104256164 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
104256086 GGGCCCCTCC
*
104256096 ACCTATTACCAAGCGGTTTTAGGTTTGATGCTTA
1 ACCTATTACCAAGCGGTATTAGGTTTGATGCTTA
*
104256130 ACCTATTACCAAGTGGTATTAGGTTTGATGCTTA
1 ACCTATTACCAAGCGGTATTAGGTTTGATGCTTA
104256164 A
1 A
104256165 TAACAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (34 bp):
ACCTATTACCAAGCGGTATTAGGTTTGATGCTTA
Found at i:104262225 original size:25 final size:25
Alignment explanation
Indices: 104262197--104262246 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
104262187 TAACAAAAAA
104262197 TATTTCTTGCTTAGCCTAGTTTAAC
1 TATTTCTTGCTTAGCCTAGTTTAAC
104262222 TATTTCTTGCTTAGCCTAGTTTAAC
1 TATTTCTTGCTTAGCCTAGTTTAAC
104262247 CCGTCTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (25 bp):
TATTTCTTGCTTAGCCTAGTTTAAC
Found at i:104270376 original size:3 final size:3
Alignment explanation
Indices: 104270365--104270422 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
104270355 AAAGAGGAGG
*
104270365 AGA AAA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
104270413 AGA AGA AGA A
1 AGA AGA AGA A
104270423 AGAGAAGAGG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:104270435 original size:12 final size:12
Alignment explanation
Indices: 104270364--104270435 Score: 62
Period size: 12 Copynumber: 6.0 Consensus size: 12
104270354 AAAAGAGGAG
*
104270364 GAGAAAAAG-AA
1 GAGAAGAAGAAA
104270375 GAAGAAGAAG-AA
1 G-AGAAGAAGAAA
104270387 GAAGAAGAAG-AA
1 G-AGAAGAAGAAA
104270399 GAAGAAGAAG-AA
1 G-AGAAGAAGAAA
104270411 GAAGAAGAAGAAA
1 G-AGAAGAAGAAA
*
104270424 GAGAAGAGGAAA
1 GAGAAGAAGAAA
104270436 AATGGAGATG
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
11 1 0.02
12 53 0.93
13 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
GAGAAGAAGAAA
Found at i:104271562 original size:21 final size:21
Alignment explanation
Indices: 104271513--104271563 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
104271503 GGCAGCTTAT
*
104271513 TGAGTTGGGGTATTCTCTTGC
1 TGAGTTGGGGTACTCTCTTGC
*
104271534 T-AGTTTGGGGTAGCT-TGTTGC
1 TGAG-TTGGGGTA-CTCTCTTGC
104271555 TGAGTTGGG
1 TGAGTTGGG
104271564 ACACCAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 2 0.08
21 20 0.80
22 3 0.12
ACGTcount: A:0.10, C:0.10, G:0.39, T:0.41
Consensus pattern (21 bp):
TGAGTTGGGGTACTCTCTTGC
Found at i:104272410 original size:89 final size:89
Alignment explanation
Indices: 104272301--104272479 Score: 250
Period size: 89 Copynumber: 2.0 Consensus size: 89
104272291 GGTAAATAAA
* * ** *
104272301 AAATTTTGATTTTACCACATACAATATAGCAGCTTGGATACAAACAATGACAGATATACGTAGCA
1 AAATTTTGATTTTACCACATACAATATAGCAGCTGGGATACAAACAATGACAGACATACACAACA
*
104272366 AACATCAATTTGATAATGGCATTC
66 AACATCAATTTGATAATGACATTC
* * * *
104272390 AAATTTTGATTTTGCTACATACAATATAGCAGCTGGGATACAAACAATGGCAGGCATACACAACA
1 AAATTTTGATTTTACCACATACAATATAGCAGCTGGGATACAAACAATGACAGACATACACAACA
* *
104272455 AATATCAGTTTGATAATGACATTC
66 AACATCAATTTGATAATGACATTC
104272479 A
1 A
104272480 TACAATGACA
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
89 78 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (89 bp):
AAATTTTGATTTTACCACATACAATATAGCAGCTGGGATACAAACAATGACAGACATACACAACA
AACATCAATTTGATAATGACATTC
Found at i:104272700 original size:6 final size:6
Alignment explanation
Indices: 104272597--104272684 Score: 124
Period size: 6 Copynumber: 14.7 Consensus size: 6
104272587 TTCAAAATTG
*
104272597 AAATCA AAATCG AAAT-A GAAATCA AAATCA AAATCA AAATCA AAATCA
1 AAATCA AAATCA AAATCA -AAATCA AAATCA AAATCA AAATCA AAATCA
* * *
104272645 AAATCA AAATCA GAATCA AAATCA AAATTA AAATCG AAAT
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAAT
104272685 AACCCTAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
6 72 0.99
7 1 0.01
ACGTcount: A:0.64, C:0.14, G:0.05, T:0.18
Consensus pattern (6 bp):
AAATCA
Found at i:104273136 original size:21 final size:21
Alignment explanation
Indices: 104273110--104273149 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
104273100 AACGCGGCAA
104273110 GTTAACTTGCCACATCAGCAG
1 GTTAACTTGCCACATCAGCAG
*
104273131 GTTAACTTGCCACGTCAGC
1 GTTAACTTGCCACATCAGC
104273150 GGTCCCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (21 bp):
GTTAACTTGCCACATCAGCAG
Found at i:104280879 original size:12 final size:12
Alignment explanation
Indices: 104280859--104280890 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
104280849 TGGAACCTGC
*
104280859 TAGTGCCTACCA
1 TAGTACCTACCA
104280871 TAGTACCTACCA
1 TAGTACCTACCA
104280883 TAGTACCT
1 TAGTACCT
104280891 TGTAGGTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.28
Consensus pattern (12 bp):
TAGTACCTACCA
Found at i:104294318 original size:12 final size:12
Alignment explanation
Indices: 104294303--104294343 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
104294293 TTTTAAAATT
104294303 TTTAAAATTAAA
1 TTTAAAATTAAA
**
104294315 TTTAATGTTAAA
1 TTTAAAATTAAA
104294327 TTTAAAATTAAA
1 TTTAAAATTAAA
104294339 TTTAA
1 TTTAA
104294344 TGTTAAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (12 bp):
TTTAAAATTAAA
Found at i:104294319 original size:6 final size:6
Alignment explanation
Indices: 104294303--104294352 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
104294293 TTTTAAAATT
* *
104294303 TTTAAA ATTAAA TTT-AA TGTTAAA TTTAAA ATTAAA TTT-AA TGTTAAA
1 TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTAAA TTTAAA T-TTAAA
104294351 TT
1 TT
104294353 AACTCGTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.17
6 24 0.67
7 6 0.17
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (6 bp):
TTTAAA
Found at i:104294335 original size:24 final size:24
Alignment explanation
Indices: 104294303--104294352 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
104294293 TTTTAAAATT
104294303 TTTAAAATTAAATTTAATGTTAAA
1 TTTAAAATTAAATTTAATGTTAAA
104294327 TTTAAAATTAAATTTAATGTTAAA
1 TTTAAAATTAAATTTAATGTTAAA
104294351 TT
1 TT
104294353 AACTCGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
TTTAAAATTAAATTTAATGTTAAA
Found at i:104294349 original size:12 final size:12
Alignment explanation
Indices: 104294310--104294352 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
104294300 ATTTTTAAAA
104294310 TTAAATTTAATG
1 TTAAATTTAATG
**
104294322 TTAAATTTAAAA
1 TTAAATTTAATG
104294334 TTAAATTTAATG
1 TTAAATTTAATG
104294346 TTAAATT
1 TTAAATT
104294353 AACTCGTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (12 bp):
TTAAATTTAATG
Found at i:104295323 original size:28 final size:28
Alignment explanation
Indices: 104295272--104295325 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
104295262 ATTATTTTAT
*
104295272 TATATAAAATAAATTTCAAAAAATATAA
1 TATATAAAATAAATTACAAAAAATATAA
* * *
104295300 TATATAAAATACATTAGAACAAATAT
1 TATATAAAATAAATTACAAAAAATAT
104295326 TTTTTAGTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (28 bp):
TATATAAAATAAATTACAAAAAATATAA
Found at i:104302497 original size:27 final size:26
Alignment explanation
Indices: 104302457--104302511 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
104302447 ATTCTAACAG
*
104302457 TTTCATTTTTTCTCTTATTTTCAACTTT
1 TTTCATTTTATCTCTTATTTT-AA-TTT
*
104302485 TTTC-TTTTATCTCTTCTTTTAATTT
1 TTTCATTTTATCTCTTATTTTAATTT
104302510 TT
1 TT
104302512 AATTATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 2 0.08
27 14 0.56
28 4 0.16
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTCATTTTATCTCTTATTTTAATTT
Found at i:104305482 original size:31 final size:31
Alignment explanation
Indices: 104305394--104305482 Score: 97
Period size: 31 Copynumber: 2.9 Consensus size: 31
104305384 TTTCGAGAGC
* * * **
104305394 TTTCATTCAAGTCATTAAATTATTCAAAAAT
1 TTTCATTTAAGTTATTAAACTATTTGAAAAT
* *
104305425 TTTCATTTAGGTTATTAAACTCTTTGAAAAT
1 TTTCATTTAAGTTATTAAACTATTTGAAAAT
* *
104305456 TTTCATTTAAGTTGTTGAACTATTTGA
1 TTTCATTTAAGTTATTAAACTATTTGA
104305483 GAGTTTTTAT
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (31 bp):
TTTCATTTAAGTTATTAAACTATTTGAAAAT
Found at i:104306503 original size:20 final size:20
Alignment explanation
Indices: 104306478--104306523 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
104306468 TTATAACCCA
104306478 TTATATAATCTAATATGAGT
1 TTATATAATCTAATATGAGT
104306498 TTATATAATCTAATATGAGT
1 TTATATAATCTAATATGAGT
104306518 TTATAT
1 TTATAT
104306524 GAGCTTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (20 bp):
TTATATAATCTAATATGAGT
Found at i:104307671 original size:6 final size:6
Alignment explanation
Indices: 104307662--104307688 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
104307652 GGGGAAATAA
104307662 ATGAAC ATGAAC ATGAAC ATGAAC ATG
1 ATGAAC ATGAAC ATGAAC ATGAAC ATG
104307689 GATTTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
ATGAAC
Found at i:104309993 original size:24 final size:24
Alignment explanation
Indices: 104309941--104309998 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
104309931 AATTTATTAT
104309941 TTAAA-TT-ATTTAAATTATAAAA
1 TTAAATTTAATTTAAATTATAAAA
* *
104309963 TTTAATTTAATTTAAATTCA-AAAC
1 TTAAATTTAATTTAAATT-ATAAAA
*
104309987 TTAAATTAAATT
1 TTAAATTTAATT
104309999 AACCCAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 4 0.14
23 2 0.07
24 22 0.76
25 1 0.03
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (24 bp):
TTAAATTTAATTTAAATTATAAAA
Found at i:104309995 original size:23 final size:24
Alignment explanation
Indices: 104309941--104310000 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 24
104309931 AATTTATTAT
* *
104309941 TTAAATT-ATTTAAATTATAAAAT
1 TTAAATTAATTTAAATTACAAAAC
*
104309964 TTAATTTAATTTAAATT-CAAAAC
1 TTAAATTAATTTAAATTACAAAAC
*
104309987 TTAAATTAAATTAA
1 TTAAATTAATTTAA
104310001 CCCAAATAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 22 0.71
24 9 0.29
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (24 bp):
TTAAATTAATTTAAATTACAAAAC
Found at i:104310029 original size:7 final size:7
Alignment explanation
Indices: 104310017--104310042 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
104310007 TAACTTAAAT
104310017 AATTCAA
1 AATTCAA
104310024 AATTCAA
1 AATTCAA
104310031 AATTCAA
1 AATTCAA
104310038 AATTC
1 AATTC
104310043 TTTAAATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (7 bp):
AATTCAA
Found at i:104311931 original size:31 final size:31
Alignment explanation
Indices: 104311881--104312042 Score: 162
Period size: 31 Copynumber: 5.2 Consensus size: 31
104311871 TACAAAATGA
* *
104311881 TCACTGAACTCTTCGAAAGTTTTCATTTAAG
1 TCACTGAACTATTCAAAAGTTTTCATTTAAG
* * *
104311912 TCACCGAACTATTCAAAAGTTTTTATTTAAA
1 TCACTGAACTATTCAAAAGTTTTCATTTAAG
* * * *
104311943 TTACTGAACTATTTAAAAGTTCTCATTTAGG
1 TCACTGAACTATTCAAAAGTTTTCATTTAAG
* * * * *
104311974 TTATTGAACTATTTAAAAGTTCTCATTTAGG
1 TCACTGAACTATTCAAAAGTTTTCATTTAAG
* * * *
104312005 TTATTGAACTATTCAAAAGTTTTTATTTAAA
1 TCACTGAACTATTCAAAAGTTTTCATTTAAG
104312036 TCACTGA
1 TCACTGA
104312043 GTTGTTAAGT
Statistics
Matches: 111, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 111 1.00
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (31 bp):
TCACTGAACTATTCAAAAGTTTTCATTTAAG
Found at i:104318749 original size:121 final size:121
Alignment explanation
Indices: 104318535--104318779 Score: 436
Period size: 121 Copynumber: 2.0 Consensus size: 121
104318525 CGGAACAACA
* *
104318535 ATGCTAAACTAAGCTTCAGTGTCGAGTGGACTGTAATATATTTTTAGCAGATTCTAAGACACGTA
1 ATGCTAAACTAAGCTTCAGTGTCGAGTGGACTGTAATATAGTTTTAGCAGATTCCAAGACACGTA
*
104318600 TAATATCAGCTTCCCCAAGACTGATTTCAAGGCTAGTGAAGAACCTCAAGTCCGCC
66 TAATATCAGCTTCCCCAAGACTGATTTCAAGGCTAGTGAAGAACCTCAAGTCCACC
* *
104318656 ATGCTAAACTCAGCTTCAGTGTCGAGTGGACTGTAATATAGTTTTAGCAGATTCCAAGACGCGTA
1 ATGCTAAACTAAGCTTCAGTGTCGAGTGGACTGTAATATAGTTTTAGCAGATTCCAAGACACGTA
*
104318721 TAATATCAGCTTCCCCTAGACTGATTTCAAGGCTAGTGAAGAACCTCAAGTCCACC
66 TAATATCAGCTTCCCCAAGACTGATTTCAAGGCTAGTGAAGAACCTCAAGTCCACC
104318777 ATG
1 ATG
104318780 TTCGATGTTG
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 118 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (121 bp):
ATGCTAAACTAAGCTTCAGTGTCGAGTGGACTGTAATATAGTTTTAGCAGATTCCAAGACACGTA
TAATATCAGCTTCCCCAAGACTGATTTCAAGGCTAGTGAAGAACCTCAAGTCCACC
Found at i:104321663 original size:17 final size:18
Alignment explanation
Indices: 104321643--104321682 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
104321633 CAAAAAGTTG
104321643 ATAAAAA-TAAAAAATAA
1 ATAAAAATTAAAAAATAA
*
104321660 ATAAAAATTATAAAATAA
1 ATAAAAATTAAAAAATAA
*
104321678 TTAAA
1 ATAAA
104321683 TTTTAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
ATAAAAATTAAAAAATAA
Found at i:104321694 original size:29 final size:30
Alignment explanation
Indices: 104321662--104321734 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 30
104321652 AAAAATAAAT
*
104321662 AAAAATTATAAAA-TAATTAAATTTTA-ATA
1 AAAAATTATAAAATTAATTAAA-ATTAGATA
*
104321691 AAAAATTA-AATAATTATTTAAAATTAGATA
1 AAAAATTATAA-AATTAATTAAAATTAGATA
104321721 AAAGAATTATAAAA
1 AAA-AATTATAAAA
104321735 ATCGTAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
28 2 0.05
29 13 0.35
30 13 0.35
31 7 0.19
32 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (30 bp):
AAAAATTATAAAATTAATTAAAATTAGATA
Found at i:104321830 original size:19 final size:20
Alignment explanation
Indices: 104321801--104321856 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
104321791 TCTTATAGAG
104321801 TCGTAAGAAAATTATAAAAAA
1 TCGTAA-AAAATTATAAAAAA
* *
104321822 T-GTAAAAAAATAT-AAAAT
1 TCGTAAAAAATTATAAAAAA
*
104321840 TCTTAAAAAATTATAAA
1 TCGTAAAAAATTATAAA
104321857 TTTATATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 5 0.17
19 17 0.59
20 6 0.21
21 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (20 bp):
TCGTAAAAAATTATAAAAAA
Found at i:104322272 original size:16 final size:17
Alignment explanation
Indices: 104322228--104322302 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 17
104322218 TTAAATTTTA
104322228 TTATTAA-AATAA-AAT
1 TTATTAATAATAATAAT
*
104322243 TTA--AATATTAAATAAT
1 TTATTAATAAT-AATAAT
104322259 TTATTAA-AATAATAAAT
1 TTATTAATAATAAT-AAT
104322276 TATATTAATTATATTAATAAT
1 T-TATTAA-TA-A-TAATAAT
104322297 TTATTA
1 TTATTA
104322303 GATGATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
13 2 0.04
14 2 0.04
15 5 0.11
16 9 0.19
17 6 0.13
18 8 0.17
20 6 0.13
21 5 0.11
22 4 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATTAATAATAATAAT
Found at i:104329337 original size:9 final size:9
Alignment explanation
Indices: 104329323--104329348 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
104329313 ATTACCCATT
104329323 GAACACTAG
1 GAACACTAG
104329332 GAACACTAG
1 GAACACTAG
104329341 GAACACTA
1 GAACACTA
104329349 ATAGATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.19, T:0.12
Consensus pattern (9 bp):
GAACACTAG
Found at i:104331529 original size:12 final size:12
Alignment explanation
Indices: 104331511--104331540 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
104331501 GGTAATGCAA
104331511 AGTGTTGGTGTT
1 AGTGTTGGTGTT
*
104331523 GGTGTTGGTGTT
1 AGTGTTGGTGTT
104331535 AGTGTT
1 AGTGTT
104331541 AGTGGGTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.43, T:0.50
Consensus pattern (12 bp):
AGTGTTGGTGTT
Found at i:104331609 original size:12 final size:12
Alignment explanation
Indices: 104331591--104331620 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
104331581 GGTAATGCAA
104331591 AGTGTTGGTGTT
1 AGTGTTGGTGTT
*
104331603 GGTGTTGGTGTT
1 AGTGTTGGTGTT
104331615 AGTGTT
1 AGTGTT
104331621 AGTGGGTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.43, T:0.50
Consensus pattern (12 bp):
AGTGTTGGTGTT
Found at i:104331626 original size:80 final size:80
Alignment explanation
Indices: 104331493--104331655 Score: 326
Period size: 80 Copynumber: 2.0 Consensus size: 80
104331483 TATAGAGGCA
104331493 TTAGTGTTGGTAATGCAAAGTGTTGGTGTTGGTGTTGGTGTTAGTGTTAGTGGGTATATGTCACA
1 TTAGTGTTGGTAATGCAAAGTGTTGGTGTTGGTGTTGGTGTTAGTGTTAGTGGGTATATGTCACA
104331558 TTGGTTAAGTACAAG
66 TTGGTTAAGTACAAG
104331573 TTAGTGTTGGTAATGCAAAGTGTTGGTGTTGGTGTTGGTGTTAGTGTTAGTGGGTATATGTCACA
1 TTAGTGTTGGTAATGCAAAGTGTTGGTGTTGGTGTTGGTGTTAGTGTTAGTGGGTATATGTCACA
104331638 TTGGTTAAGTACAAG
66 TTGGTTAAGTACAAG
104331653 TTA
1 TTA
104331656 TCAAGAGAGT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 83 1.00
ACGTcount: A:0.21, C:0.05, G:0.33, T:0.40
Consensus pattern (80 bp):
TTAGTGTTGGTAATGCAAAGTGTTGGTGTTGGTGTTGGTGTTAGTGTTAGTGGGTATATGTCACA
TTGGTTAAGTACAAG
Found at i:104333943 original size:22 final size:24
Alignment explanation
Indices: 104333891--104333942 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
104333881 GCTATGTTAA
*
104333891 AAAAAATTAATTATAAAAATATTC
1 AAAAAATTAATAATAAAAATATTC
104333915 AAAAAATT-ATAAT-AAAATAATTC
1 AAAAAATTAATAATAAAAAT-ATTC
104333938 AAAAA
1 AAAAA
104333943 TAAAAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 5 0.19
23 13 0.50
24 8 0.31
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAAAATTAATAATAAAAATATTC
Found at i:104344523 original size:63 final size:63
Alignment explanation
Indices: 104344424--104344546 Score: 219
Period size: 63 Copynumber: 2.0 Consensus size: 63
104344414 ACAAGTTTCG
*
104344424 ATCTTATCTTGTAGGTACCAAAGTAACTGTCCATACAGACCACTCGGCAATTAAGTACTTACT
1 ATCTTATCTTGTAGGTACCAAAGTAACTGTCCATACAGACCACTCAGCAATTAAGTACTTACT
* *
104344487 ATCTTATCTTGTAGGTACCAAAGTAACTGTCTATACAGACCACTCAGTAATTAAGTACTT
1 ATCTTATCTTGTAGGTACCAAAGTAACTGTCCATACAGACCACTCAGCAATTAAGTACTT
104344547 GCCAAGAAAG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.32
Consensus pattern (63 bp):
ATCTTATCTTGTAGGTACCAAAGTAACTGTCCATACAGACCACTCAGCAATTAAGTACTTACT
Found at i:104353430 original size:29 final size:29
Alignment explanation
Indices: 104353397--104353466 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
104353387 TAAAAAGGGA
*
104353397 ACACGGTCATGTGGGGCCTGTGTTGGGCC
1 ACACGGTCATGTGGGGCCCGTGTTGGGCC
* *
104353426 ACACGATCTTGTGGGGCCCGTGTTGGGCC
1 ACACGGTCATGTGGGGCCCGTGTTGGGCC
104353455 ACACGGTCATGT
1 ACACGGTCATGT
104353467 CACACACCCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (29 bp):
ACACGGTCATGTGGGGCCCGTGTTGGGCC
Found at i:104362489 original size:36 final size:36
Alignment explanation
Indices: 104362442--104362514 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
104362432 GTAACCATAT
104362442 ATTGAAAATTCAACTGAAAGAACATCAAAGTTTCAA
1 ATTGAAAATTCAACTGAAAGAACATCAAAGTTTCAA
104362478 ATTGAAAATTCAACTGAAAGAACATCAAAGTTTCAA
1 ATTGAAAATTCAACTGAAAGAACATCAAAGTTTCAA
104362514 A
1 A
104362515 CATTCCAAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.25
Consensus pattern (36 bp):
ATTGAAAATTCAACTGAAAGAACATCAAAGTTTCAA
Found at i:104375006 original size:25 final size:25
Alignment explanation
Indices: 104374959--104375007 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
104374949 TAATTTTTTC
*
104374959 TTAATTTTTAATTTTATTCAATTAG
1 TTAATTTTTAATTTCATTCAATTAG
*
104374984 TTAATTTTTCAA-TTCATTGAATTA
1 TTAATTTTT-AATTTCATTCAATTA
104375008 TTTTTATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TTAATTTTTAATTTCATTCAATTAG
Found at i:104389273 original size:26 final size:26
Alignment explanation
Indices: 104389244--104389351 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
104389234 TGGTACAAAT
104389244 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
104389270 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
104389296 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
104389322 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
104389348 TGAT
1 TGAT
104389352 GAGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:104391791 original size:40 final size:40
Alignment explanation
Indices: 104391707--104391971 Score: 297
Period size: 40 Copynumber: 6.7 Consensus size: 40
104391697 TTGAATGCTG
* * * *
104391707 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
104391747 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
104391786 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
104391827 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
104391867 TTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
104391907 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
104391946 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
104391972 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 22, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
39 34 0.17
40 148 0.76
41 13 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:104399801 original size:36 final size:35
Alignment explanation
Indices: 104399709--104399908 Score: 165
Period size: 36 Copynumber: 5.4 Consensus size: 35
104399699 ATATCCGGAC
104399709 TAAGATCCGAAGCATTTGTGCGAGATA-AAATTCGGG-
1 TAAG-TCCGAAGCA-TTGTGCGAGATATAAA-TCGGGT
* *
104399745 TAAGCCCGAAGGCCTTGTGCGAGATACTAAATC-GGT
1 TAAGTCCGAA-GCATTGTGCGAGATA-TAAATCGGGT
*
104399781 TAAGTCCGAAGCATTCGTGCGAGTTATTAAATCGGGT
1 TAAGTCCGAAGCATT-GTGCGAGATA-TAAATCGGGT
* *
104399818 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAATCCGGGT
1 TAAGT-CCGAA-GCATT-GTGCGAGATATAAAT-CGGGT
* * *
104399857 TAAGTCCCGAAGCATTGTGTGAG-TACTAAAACCGGGC
1 TAAGT-CCGAAGCATTGTGCGAGATA-T-AAATCGGGT
*
104399894 TATGTCCGAAGCATT
1 TAAGTCCGAAGCATT
104399909 TGAACGAGGA
Statistics
Matches: 141, Mismatches: 12, Indels: 22
0.81 0.07 0.13
Matches are distributed among these distances:
35 23 0.16
36 44 0.31
37 26 0.18
38 16 0.11
39 32 0.23
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (35 bp):
TAAGTCCGAAGCATTGTGCGAGATATAAATCGGGT
Found at i:104399801 original size:71 final size:75
Alignment explanation
Indices: 104399709--104399908 Score: 202
Period size: 76 Copynumber: 2.7 Consensus size: 75
104399699 ATATCCGGAC
* *
104399709 TAAGATCCGAAGCATTTGTGCGAG-ATAAAATTCGGG-TAAG-CCCGAAGGCCTT-GTGCGAGAT
1 TAAG-TCCGAAGCATTCGTGCGAGTATAAAA-TCGGGTTAAGTCCCGAAGGCATTCGTGCGAGAT
104399770 ACTAAAT-C-GGT
64 A-TAAATCCGGGT
* *
104399781 TAAGTCCGAAGCATTCGTGCGAGTTATTAAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA
1 TAAGTCCGAAGCATTCGTGCGAG-TATAAAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATA
*
104399846 TTAATCCGGGT
65 TAAATCCGGGT
* * * *
104399857 TAAGTCCCGAAGCATT-GTGTGAGTACTAAAACCGGGCTATGT-CCGAA-GCATT
1 TAAGT-CCGAAGCATTCGTGCGAGTA-TAAAATCGGGTTAAGTCCCGAAGGCATT
104399909 TGAACGAGGA
Statistics
Matches: 109, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
71 18 0.17
72 9 0.08
73 9 0.08
74 20 0.18
75 17 0.16
76 26 0.24
77 10 0.09
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (75 bp):
TAAGTCCGAAGCATTCGTGCGAGTATAAAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATAT
AAATCCGGGT
Done.