Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 318 of 344
Found at i:104399839 original size:39 final size:37
Alignment explanation
Indices: 104399715--104399880 Score: 175
Period size: 39 Copynumber: 4.5 Consensus size: 37
104399705 GGACTAAGAT
*
104399715 CCGAAGCATTTGTGCGAG--ATAAAATTCGGG-TAAG-C
1 CCGAAGCA-TTGTGCGAGTTATTAAA-TCGGGTTAAGTC
* * *
104399750 CCGAAGGCCTTGTGCGAGATACTAAATC-GGTTAAGT-
1 CCGAA-GCATTGTGCGAGTTATTAAATCGGGTTAAGTC
104399786 CCGAAGCATTCGTGCGAGTTATTAAATCGGGTTAAGTC
1 CCGAAGCATT-GTGCGAGTTATTAAATCGGGTTAAGTC
104399824 CCGAAGGCATTCGTGCGAGTTATT-AATCCGGGTTAAGTC
1 CCGAA-GCATT-GTGCGAGTTATTAAAT-CGGGTTAAGTC
*
104399863 CCGAAGCATTGTGTGAGT
1 CCGAAGCATTGTGCGAGT
104399881 ACTAAAACCG
Statistics
Matches: 114, Mismatches: 7, Indels: 18
0.82 0.05 0.13
Matches are distributed among these distances:
35 20 0.18
36 28 0.25
37 19 0.17
38 13 0.11
39 34 0.30
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (37 bp):
CCGAAGCATTGTGCGAGTTATTAAATCGGGTTAAGTC
Found at i:104401742 original size:44 final size:44
Alignment explanation
Indices: 104401660--104401747 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
104401650 ATTATTGCAA
*
104401660 TATTTGGTTATACAAAATTAGGTGAAAGCTCCAAAAGAGTTAAT
1 TATTTGGTTATACAAAATTAGGTGAAAGCTCCAAAAGAGCTAAT
* * * *
104401704 TATTTGG-TAGTACAAAATTTGTTGAAAGCTCTAGAAGAGCTAAT
1 TATTTGGTTA-TACAAAATTAGGTGAAAGCTCCAAAAGAGCTAAT
104401748 ATATCAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (44 bp):
TATTTGGTTATACAAAATTAGGTGAAAGCTCCAAAAGAGCTAAT
Found at i:104406258 original size:22 final size:22
Alignment explanation
Indices: 104406233--104406328 Score: 58
Period size: 22 Copynumber: 4.5 Consensus size: 22
104406223 TATTTATCAA
104406233 TTTATTTATTATTATTTTACTT
1 TTTATTTATTATTATTTTACTT
** * *
104406255 TTTAAATATT-TAAATTTGA--T
1 TTTATTTATTAT-TATTTTACTT
* * *
104406275 ATTA-TTA-TATTTGTTTTATCTA
1 TTTATTTATTA-TTATTTTA-CTT
*
104406297 TTTATTTATTATTCTTTTACTT
1 TTTATTTATTATTATTTTACTT
104406319 TTTATTTATT
1 TTTATTTATT
104406329 TATTTATTAT
Statistics
Matches: 53, Mismatches: 13, Indels: 16
0.65 0.16 0.20
Matches are distributed among these distances:
18 1 0.02
19 6 0.11
20 5 0.09
21 1 0.02
22 28 0.53
23 10 0.19
24 2 0.04
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (22 bp):
TTTATTTATTATTATTTTACTT
Found at i:104406330 original size:64 final size:64
Alignment explanation
Indices: 104406107--104406322 Score: 328
Period size: 64 Copynumber: 3.4 Consensus size: 64
104406097 TTATTTTATC
* * *
104406107 TATTTGTTATTCTTTTACTTTTTAAACATTCAAATTTGATATTATTTATATTTGTTTTATCTATT
1 TATTTATTATTCTTTTACTTTTTAAATATTTAAATTTGATATTA-TTATATTTGTTTTATCTATT
* * * *
104406172 TATTTATTATTCTTTTAC-TTTTAAATATTTATATTTAATATTATTTTATTT-TATTTATCAATT
1 TATTTATTATTCTTTTACTTTTTAAATATTTAAATTTGATATTATTATATTTGT-TTTATCTATT
*
104406235 TATTTATTATTATTTTACTTTTTAAATATTTAAATTTGATATTATTATATTTGTTTTATCTATT
1 TATTTATTATTCTTTTACTTTTTAAATATTTAAATTTGATATTATTATATTTGTTTTATCTATT
104406299 TATTTATTATTCTTTTACTTTTTA
1 TATTTATTATTCTTTTACTTTTTA
104406323 TTTATTTATT
Statistics
Matches: 135, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
62 1 0.01
63 33 0.24
64 83 0.61
65 18 0.13
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (64 bp):
TATTTATTATTCTTTTACTTTTTAAATATTTAAATTTGATATTATTATATTTGTTTTATCTATT
Found at i:104406345 original size:15 final size:15
Alignment explanation
Indices: 104406170--104406345 Score: 85
Period size: 15 Copynumber: 11.3 Consensus size: 15
104406160 GTTTTATCTA
*
104406170 TTTATTTATTATTCT
1 TTTATTTATTATTAT
* *
104406185 TTTACTTT-TAAATAT
1 TTTA-TTTATTATTAT
*
104406200 TTATATTTAATATTAT
1 TT-TATTTATTATTAT
* *
104406216 TTTATTTTATTTATCAA
1 TTTA-TTTA-TTATTAT
104406233 TTTATTTATTATTAT
1 TTTATTTATTATTAT
*
104406248 TTTACTTT-TTAAATAT
1 TTTA-TTTATT-ATTAT
*
104406264 TTAAATTTGA-TATTAT
1 TT-TATTT-ATTATTAT
* *
104406280 TATATTTGTT-TTATCT
1 TTTATTTATTATTA--T
*
104406296 ATTTATTTATTATTCT
1 -TTTATTTATTATTAT
104406312 TTTACTTT-TTATT-T
1 TTTA-TTTATTATTAT
*
104406326 ATTTATTTATTATTCT
1 -TTTATTTATTATTAT
104406342 TTTA
1 TTTA
104406346 AAATATTTAA
Statistics
Matches: 122, Mismatches: 20, Indels: 38
0.68 0.11 0.21
Matches are distributed among these distances:
14 7 0.06
15 53 0.43
16 42 0.34
17 18 0.15
18 2 0.02
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (15 bp):
TTTATTTATTATTAT
Found at i:104406432 original size:94 final size:88
Alignment explanation
Indices: 104406239--104406403 Score: 205
Period size: 88 Copynumber: 1.9 Consensus size: 88
104406229 TCAATTTATT
* * ***
104406239 TATTATTATT-TTACTTTTTAAATATTTAAATTTGATATTATTATATTTGTTTTATCTATTTATT
1 TATTATTATTATTACTTTTAAAATATTTAAATTTGATATTATTATATTTCTTTTATCTAAGCATT
104406303 TATTATTCTTTTACTTTTTATTTA
66 TATTATTCTTTTA-TTTTTATTTA
104406327 T-TTATTTATTATT-CTTTTAAAATATTTAAATTTGATATTACTTATATTTCCTTTTCAT-TAAG
1 TATTA-TTATTATTACTTTTAAAATATTTAAATTTGATATTA-TTATATTT-CTTTT-ATCTAAG
104406389 CATTTA-TATTCTTTT
62 CATTTATTATTCTTTT
104406404 TTTGCCCTTA
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
87 3 0.04
88 32 0.48
89 19 0.28
90 11 0.16
91 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (88 bp):
TATTATTATTATTACTTTTAAAATATTTAAATTTGATATTATTATATTTCTTTTATCTAAGCATT
TATTATTCTTTTATTTTTATTTA
Found at i:104408753 original size:125 final size:124
Alignment explanation
Indices: 104408459--104408980 Score: 744
Period size: 125 Copynumber: 4.2 Consensus size: 124
104408449 CCCAAACATG
* * *
104408459 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGGTTTCACAAATTCTTCTCAAATAGCATCATGC
1 CTACTGTAGCAAAAGCGCGTCCACGAAGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
104408524 T-GAAGAGATTTTATACTATTTGCTCAGAAACATCAAGTCAAAATTATTTTTTCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAGTCGAAATTATTTTTCCAGGAC
* * *
104408582 CTACTGTAGCAAAAGCGCATCCAC-AAGGGCGCGATTGCATAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAA-GGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* *
104408646 CTAGAAGCGATTTTATACTATTTACTCAGAAACGTCAAGTCGAAATTATTTCTTCCAGGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAGTCGAAATTATTT-TTCCAGGAC
* * *
104408707 CTACTATAGCAAAAGCGCGTCCACGAAGGCACGATTTCACAAATTCTTCTCAAATAGGATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAAGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
104408772 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAGTCGAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAGTCGAAATTATTT-TTCCAGGAC
* * * * *
104408832 CTACTGTAGCAAAAGCGCGTCGACG-AGAGCGCGATTTTATAAATTCTTATCAAACAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAAG-GCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * * * *
104408896 CTAGAAGCGATTTTATACTATTTGCCCAGAAACGTCAACTCGAAATTATTTTTTCAAGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAGTCGAAATTATTTTTCCAGGAC
* * *
104408956 CTACTATAGCAAAAGTGCGTACACG
1 CTACTGTAGCAAAAGCGCGTCCACG
104408981 TGGGTGCGAC
Statistics
Matches: 358, Mismatches: 36, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
122 1 0.00
123 58 0.16
124 74 0.21
125 223 0.62
126 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAAGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAGTCGAAATTATTTTTCCAGGAC
Found at i:104409049 original size:16 final size:16
Alignment explanation
Indices: 104409013--104409051 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
104409003 TTTTTTCTCC
*
104409013 AAAACCTTAAAAACCC
1 AAAACCTTAAAAACCA
* *
104409029 TAAACCTTAAAATCCA
1 AAAACCTTAAAAACCA
104409045 AAAACCT
1 AAAACCT
104409052 AACGTGGGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAACCTTAAAAACCA
Found at i:104409763 original size:30 final size:29
Alignment explanation
Indices: 104409707--104409787 Score: 74
Period size: 30 Copynumber: 2.7 Consensus size: 29
104409697 AATTTTAAAA
* * *
104409707 TTATACACGAATTTTGATTTATGTGTAAT
1 TTATACACAAATTTTAATTTAGGTGTAAT
104409736 CTTATACACAAAATTTTAATTT-GGTGTAAT
1 -TTATACAC-AAATTTTAATTTAGGTGTAAT
* *
104409766 TATATACATGAAACTTTAATTT
1 T-TATACA-CAAATTTTAATTT
104409788 TGATTCAATC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
29 1 0.02
30 32 0.74
31 10 0.23
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.46
Consensus pattern (29 bp):
TTATACACAAATTTTAATTTAGGTGTAAT
Found at i:104409979 original size:29 final size:30
Alignment explanation
Indices: 104409926--104410005 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 30
104409916 AAATTGAATC
104409926 AAAT-CAAATTTCATGTATAAAATTACACA-
1 AAATCCAAATTT-ATGTATAAAATTACACAT
** *
104409955 AAATCCAAATTTATGTATACTATTACATAT
1 AAATCCAAATTTATGTATAAAATTACACAT
* *
104409985 AAAACCAAAATTATTGTATAA
1 AAATCCAAATTTA-TGTATAA
104410006 TTTTGAAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 18 0.43
30 18 0.43
31 6 0.14
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.34
Consensus pattern (30 bp):
AAATCCAAATTTATGTATAAAATTACACAT
Found at i:104409993 original size:30 final size:29
Alignment explanation
Indices: 104409930--104410005 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 29
104409920 TGAATCAAAT
*
104409930 CAAATTTCATGTATAAAATTACACAAAATC
1 CAAATTT-ATGTATAAAATTACACAAAAAC
** *
104409960 CAAATTTATGTATACTATTACATATAAAAC
1 CAAATTTATGTATAAAATTACACA-AAAAC
*
104409990 CAAAATTATTGTATAA
1 CAAATTTA-TGTATAA
104410006 TTTTGAAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 14 0.37
30 18 0.47
31 6 0.16
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (29 bp):
CAAATTTATGTATAAAATTACACAAAAAC
Found at i:104421108 original size:36 final size:36
Alignment explanation
Indices: 104421068--104421148 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
104421058 TGACTCATTT
* *
104421068 GTTGGTAATATGAAACGCAAGAAATGCATACTATCC
1 GTTGGTAATATAAAACGCAAGAAATACATACTATCC
** * **
104421104 GTTGGCGATATAAAACGTAAGAAATATGTACTATCC
1 GTTGGTAATATAAAACGCAAGAAATACATACTATCC
104421140 GTTGCGTAA
1 GTTG-GTAA
104421149 GAAATACAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
36 33 0.94
37 2 0.06
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (36 bp):
GTTGGTAATATAAAACGCAAGAAATACATACTATCC
Found at i:104426919 original size:20 final size:20
Alignment explanation
Indices: 104426877--104426924 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
104426867 TATATTCTTT
***
104426877 AAAT-TTTTAAAATTTATGT
1 AAATATTTTAAAATTTAAAA
104426896 AAATATTTTAAAATTTAAAA
1 AAATATTTTAAAATTTAAAA
104426916 AAATATTTT
1 AAATATTTT
104426925 TTTTTGTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
AAATATTTTAAAATTTAAAA
Found at i:104453476 original size:40 final size:38
Alignment explanation
Indices: 104453446--104453653 Score: 265
Period size: 40 Copynumber: 5.3 Consensus size: 38
104453436 GGACTAAGAT
* *
104453446 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAG-TA-TAAATCCGGGTTAAGTC
104453486 CCGAAGGCATTCGTGCGAGTATAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTATAAATCCGGGTTAAGTC
104453524 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAG-TA-TAAATCCGGGTTAAGTC
* *
104453564 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAG-T-ATAAATCCGGGTTAAGTC
* * * *
104453604 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAG-TA-TAAATCCGGGTTAAGTC
104453643 CCGAAGGCATT
1 CCGAAGGCATT
104453654 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 36 0.23
39 38 0.24
40 82 0.53
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (38 bp):
CCGAAGGCATTCGTGCGAGTATAAATCCGGGTTAAGTC
Found at i:104453541 original size:78 final size:78
Alignment explanation
Indices: 104453393--104453653 Score: 312
Period size: 78 Copynumber: 3.3 Consensus size: 78
104453383 TTGAATGCTG
* * * ** *
104453393 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTG-ATAAATCCGGGTTAAG-TCCCGAAGG-CA
*
104453456 TTGTGCGAGATACTAAA
62 TTGTGCGAGTTACTAAA
*
104453473 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-ATAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGATAAATCCGGGTTAAGTCCCGAAGGCATT-G
*
104453537 TGCGAGTTATTAAA
65 TGCGAGTTACTAAA
* * *
104453551 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAG-TGATAAATCCGGGTTAAGTCCCGAAGGCATTG
*
104453616 TGTGAGTTACTAAA
65 TGCGAGTTACTAAA
* *
104453630 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
104453654 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 16, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
77 4 0.03
78 65 0.41
79 35 0.22
80 50 0.31
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGATAAATCCGGGTTAAGTCCCGAAGGCATTGT
GCGAGTTACTAAA
Found at i:104453605 original size:118 final size:120
Alignment explanation
Indices: 104453393--104453653 Score: 316
Period size: 118 Copynumber: 2.2 Consensus size: 120
104453383 TTGAATGCTG
* * *
104453393 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
*
104453457 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TA-TAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
104453511 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * *
104453574 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
104453630 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
104453654 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
117 7 0.06
118 83 0.69
119 31 0.26
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:104453677 original size:118 final size:117
Alignment explanation
Indices: 104453394--104453688 Score: 292
Period size: 118 Copynumber: 2.5 Consensus size: 117
104453384 TGAATGCTGT
* ** * * * *
104453394 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTATATCCGG-TTAAG-TCCCGAAGGCATT
* *
104453457 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATAAAT
63 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATAAAA
* ** * * *
104453512 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCC-GGTTAAGTCCCGAAGGCATTCG
* ** * *
104453577 TGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAA
65 TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TA-TAAAA
* * *
104453631 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTATATCCGGTTAAGTCCCGAAGG
104453689 TACGTGATTT
Statistics
Matches: 147, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
117 7 0.05
118 96 0.65
119 44 0.30
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (117 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGTTAAGTCCCGAAGGCATTCGT
GCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATAAAA
Found at i:104461165 original size:40 final size:40
Alignment explanation
Indices: 104461081--104461345 Score: 297
Period size: 40 Copynumber: 6.7 Consensus size: 40
104461071 TTGAATGCTG
* * * *
104461081 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
104461121 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
104461160 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
104461201 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
104461241 TTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
104461281 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
104461320 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
104461346 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 22, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
39 34 0.17
40 148 0.76
41 13 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:104463556 original size:27 final size:27
Alignment explanation
Indices: 104463507--104463674 Score: 200
Period size: 27 Copynumber: 6.2 Consensus size: 27
104463497 AGGAAGCATC
*
104463507 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
104463534 CTGGTGGCTCTGCTACATATATCTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
*
104463560 CCTGGTGGCTATGCCACA-ATTATCTGAT
1 -CTGGTGGCTCTGCCACATA-TATCTGAT
*
104463588 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
104463615 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
* * *
104463642 CTGGTGGCTCTACCA-AAATATCTATAT
1 CTGGTGGCTCTGCCACATATATCT-GAT
104463669 CTGGTG
1 CTGGTG
104463675 ACTTCATCAC
Statistics
Matches: 125, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
26 9 0.07
27 113 0.90
28 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:104463587 original size:54 final size:54
Alignment explanation
Indices: 104463505--104463652 Score: 244
Period size: 54 Copynumber: 2.7 Consensus size: 54
104463495 AGAGGAAGCA
*
104463505 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCTACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
104463559 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
* * *
104463613 TTCTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCT
1 TCCTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCT
104463653 ACCAAAATAT
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 2 0.02
54 87 0.98
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
Found at i:104463671 original size:81 final size:81
Alignment explanation
Indices: 104463507--104463674 Score: 232
Period size: 81 Copynumber: 2.1 Consensus size: 81
104463497 AGGAAGCATC
*
104463507 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCTACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
* *
104463572 GCCACAATTATCTGAT
66 ACCACAAATATCTGAT
* * * *
104463588 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTC
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTA
*
104463652 TACCA-AAATATCTATAT
65 TACCACAAATATCT-GAT
104463669 CTGGTG
1 CTGGTG
104463675 ACTTCATCAC
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 9 0.12
81 68 0.88
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
ACCACAAATATCTGAT
Found at i:104463672 original size:54 final size:54
Alignment explanation
Indices: 104463507--104463674 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
104463497 AGGAAGCATC
* *
104463507 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCTACATATATCTGTC
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
104463561 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * * *
104463615 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTACCA-AAATATCTATAT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-T
104463669 CTGGTG
1 CTGGTG
104463675 ACTTCATCAC
Statistics
Matches: 105, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
53 10 0.10
54 95 0.90
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:104465671 original size:24 final size:27
Alignment explanation
Indices: 104465641--104465689 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
104465631 TTTAGAAACA
104465641 AAATAAAAA-AAT-AAAAA-AAGGATT
1 AAATAAAAAGAATCAAAAATAAGGATT
104465665 AAATAAAAAGAATCAAAAATAAGGA
1 AAATAAAAAGAATCAAAAATAAGGA
104465690 AGGACTGCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 3 0.14
26 5 0.23
27 5 0.23
ACGTcount: A:0.73, C:0.02, G:0.10, T:0.14
Consensus pattern (27 bp):
AAATAAAAAGAATCAAAAATAAGGATT
Found at i:104466606 original size:17 final size:17
Alignment explanation
Indices: 104466571--104466608 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
104466561 TTGTTTGTTG
*
104466571 TGGGCTAGGGTTTAGTT
1 TGGGCTAGGGTTTAATT
104466588 TGGGCCTAGGG-TTAATT
1 TGGG-CTAGGGTTTAATT
104466605 TGGG
1 TGGG
104466609 TTTAAGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.13, C:0.08, G:0.42, T:0.37
Consensus pattern (17 bp):
TGGGCTAGGGTTTAATT
Found at i:104467056 original size:44 final size:44
Alignment explanation
Indices: 104466938--104467573 Score: 210
Period size: 44 Copynumber: 13.8 Consensus size: 44
104466928 CAGAGAGGCT
* * * *
104466938 AGACTTGTAGCTTTAATCTGTTCCACTACAACTTCAGTGAA-ATA
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAG-GAAGATA
* * * *
104466982 AGA-TTCGCTATCTTCAGTTTGCCCCACTGCAACTTCAGGAAGATA
1 AGACTT-G-TAACTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
* * *
104467027 AGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGACA
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
* * * ** * *
104467071 AGGTTAATGGTAACTTTAATCTGCTCTGCTACAACTTCAGGGAGATA
1 A-G--ACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
* ** *
104467118 AGA-TTAATGGCTTCAATATGCTCCACTGCAACTTCA-GAGAGATA
1 AGACTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGA-AGATA
* ** * * * *
104467162 AGATTCACCATGATAGA-TTTGATCCGATCTACTGCAACTTCA-GAGGTATA
1 AG----A-CTTG-TA-ACTTCAATCTGCTCCACTGCAACTTCAGGAAG-ATA
* ** * *
104467212 GGACTTGTAACTCCTAGCTTTAATCTATTCCATTGCAACTTCAAGGAA-ATG
1 AGACTTGTAACT--T--C---AATCTGCTCCACTGCAACTTC-AGGAAGATA
* * * *
104467263 AGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
1 AGACTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
* * *
104467308 AGACTTGTAACTTCAACCTGCTCAACTGTAACTTCATGGAA-ATA
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCA-GGAAGATA
* * * * * * * * *
104467352 AG-GTTCATGACTTTAATTTGTTCCACTGTAACTTTAGGGAGATA
1 AGACTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
* * * * * * *
104467396 AGATTTGTTTATTTCTTTACCTGCTCCACTGCAACTTTAGGGAGATA
1 AGACTTG-TAACTTC--AATCTGCTCCACTGCAACTTCAGGAAGATA
** * * * ** * *
104467443 AGGTTTATAGCTTTAATCTGCTTTACTGCAACCTCAGGGAGATA
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
* * * *
104467487 AGATTTTCCATGATAACTTCGATATACTCCACTGCAACTTCAGGAAGATA
1 AGA-----CTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
* * ** *
104467537 AAATTTGTGGCTTCAATCTGCTCTACTGCAACTTCAG
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAG
104467574 AGAGACAAGA
Statistics
Matches: 425, Mismatches: 124, Indels: 86
0.67 0.20 0.14
Matches are distributed among these distances:
43 10 0.02
44 181 0.43
45 70 0.16
46 8 0.02
47 65 0.15
48 2 0.00
49 2 0.00
50 58 0.14
51 22 0.05
52 5 0.01
53 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
Found at i:104467457 original size:91 final size:89
Alignment explanation
Indices: 104467280--104467492 Score: 227
Period size: 91 Copynumber: 2.4 Consensus size: 89
104467270 CTATCTTCAG
* *
104467280 TCTGC-TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCAACTGTAACTTCA
1 TCTGCTTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTGCTCAACTGCAACTTCA
*
104467344 TGGAAATAAGGTTCATGACTTTAA
66 GGGAAATAAGGTTCATGACTTTAA
* * * * * * *
104467368 TTTG-TTCCACTGTAACTTTAGGGAGATAAGATTTGTTTATTTCTTTACCTGCTCCACTGCAACT
1 TCTGCTTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTC--AACCTGCTCAACTGCAACT
* * *
104467432 TTAGGGAGATAAGGTTTAT-AGCTTTAA
63 TCAGGGAAATAAGGTTCATGA-CTTTAA
* *
104467459 TCTGCTT-TACTGCAACCTCAGGGAGATAAGATTT
1 TCTGCTTCCACTGCAACTTCAGGGAGATAAGATTT
104467493 TCCATGATAA
Statistics
Matches: 101, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
88 30 0.30
89 5 0.05
90 1 0.01
91 63 0.62
92 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (89 bp):
TCTGCTTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTGCTCAACTGCAACTTCA
GGGAAATAAGGTTCATGACTTTAA
Found at i:104467555 original size:94 final size:94
Alignment explanation
Indices: 104467419--104467653 Score: 317
Period size: 94 Copynumber: 2.5 Consensus size: 94
104467409 TCTTTACCTG
* * * * *
104467419 CTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTGCTTTACTGCAACCTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCTTTACTGCAACCTCAGAGAG
* **
104467484 ATAAGATTTTCCATGATAACTTCGATATA
66 ACAAGATTCGCCATGATAACTTCGATATA
* * * * *
104467513 CTCCACTGCAACTTCAGGAAGATAAAATTTGTGGCTTCAATCTGCTCTACTGCAACTTCAGAGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCTTTACTGCAACCTCAGAGAG
* * *
104467578 ACAAGATTCGCCCTGGTAACTTCGATTTA
66 ACAAGATTCGCCATGATAACTTCGATATA
*
104467607 CTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTCAATCTGCTT
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCTT
104467654 AAGATTCGCC
Statistics
Matches: 120, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 120 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (94 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCTTTACTGCAACCTCAGAGAG
ACAAGATTCGCCATGATAACTTCGATATA
Found at i:104467767 original size:46 final size:45
Alignment explanation
Indices: 104467717--104467805 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 45
104467707 ATTTGTGATT
* * *
104467717 TCTTCCATCCATCCCACT-AATACTCATGGGTATAGGATTTGTACCA
1 TCTTCAATCCATCCCACTCAA-A-TCAGGGGTATAAGATTTGTACCA
104467763 TCTTCAATCCATCCCACTGCAAATCAGGGGTATAAGATTTGTA
1 TCTTCAATCCATCCCACT-CAAATCAGGGGTATAAGATTTGTA
104467806 TCATTGATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
46 35 0.92
47 1 0.03
48 2 0.05
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (45 bp):
TCTTCAATCCATCCCACTCAAATCAGGGGTATAAGATTTGTACCA
Found at i:104472371 original size:12 final size:13
Alignment explanation
Indices: 104472354--104472382 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
104472344 TTATTTTATT
104472354 TAAAAATAAAAA-
1 TAAAAATAAAAAC
104472366 TAAAAATAAAAAC
1 TAAAAATAAAAAC
104472379 TAAA
1 TAAA
104472383 TCCTTCTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.17
Consensus pattern (13 bp):
TAAAAATAAAAAC
Found at i:104475746 original size:31 final size:29
Alignment explanation
Indices: 104475682--104475748 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
104475672 AGTGATTTAC
*
104475682 TATAA-ATATAAATTTATATAATTATTAT
1 TATAACATATAAATTAATATAATTATTAT
104475710 T-TAACATATATAATTAATATAA-TATTATT
1 TATAACATATA-AATTAATATAATTATTA-T
104475739 TCATAACATA
1 T-ATAACATA
104475749 ATATTCTGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
27 3 0.09
28 11 0.33
29 12 0.36
31 7 0.21
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (29 bp):
TATAACATATAAATTAATATAATTATTAT
Found at i:104476023 original size:17 final size:18
Alignment explanation
Indices: 104476003--104476037 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
104475993 TTCATAAAAG
104476003 TATTTATTTT-ATAATTT
1 TATTTATTTTGATAATTT
*
104476020 TATTTGTTTTGATAATTT
1 TATTTATTTTGATAATTT
104476038 AAAACAACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (18 bp):
TATTTATTTTGATAATTT
Found at i:104476463 original size:48 final size:48
Alignment explanation
Indices: 104476392--104476487 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
104476382 ATGTGGATAA
*
104476392 ATCATTGTTTATGTTTTATTTTGGCTGTACCGTCACCAGACTTGCAAC
1 ATCATTGTTTATGTTTTATTTTGGCTGTACCATCACCAGACTTGCAAC
*
104476440 ATCATTGTTTATGTTTTATTTTGGCTGTACCATCACCAGGCTTGCAAC
1 ATCATTGTTTATGTTTTATTTTGGCTGTACCATCACCAGACTTGCAAC
104476488 TAAAATAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (48 bp):
ATCATTGTTTATGTTTTATTTTGGCTGTACCATCACCAGACTTGCAAC
Found at i:104481118 original size:21 final size:22
Alignment explanation
Indices: 104481092--104481132 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
104481082 CTAAGTTCAC
104481092 TTTGGAT-TTTCTT-TTTTATGT
1 TTTGGATATTT-TTCTTTTATGT
104481113 TTTGGATATTTTTCTTTTAT
1 TTTGGATATTTTTCTTTTAT
104481133 TTCAATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.12, C:0.05, G:0.12, T:0.71
Consensus pattern (22 bp):
TTTGGATATTTTTCTTTTATGT
Found at i:104482097 original size:20 final size:18
Alignment explanation
Indices: 104482072--104482108 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
104482062 ATTGCTAAGT
104482072 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
104482092 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
104482109 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:104482717 original size:46 final size:46
Alignment explanation
Indices: 104482665--104482840 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
104482655 TGGTTGAGCA
*
104482665 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
104482711 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
104482758 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
104482804 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104482841 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 64 0.60
47 26 0.24
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:104482821 original size:93 final size:93
Alignment explanation
Indices: 104482662--104482832 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
104482652 GGATGGTTGA
* **
104482662 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
104482727 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
104482755 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
104482820 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
104482833 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:104485942 original size:21 final size:20
Alignment explanation
Indices: 104485895--104485943 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
104485885 GGTACTCTAG
104485895 AAATTTTTCGTGAAATTTCA
1 AAATTTTTCGTGAAATTTCA
104485915 AAATTTTTCGTGAAATTTCA
1 AAATTTTTCGTGAAATTTCA
104485935 AAATTTTTC
1 AAATTTTTC
104485944 CTAGGTGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (20 bp):
AAATTTTTCGTGAAATTTCA
Found at i:104488126 original size:20 final size:20
Alignment explanation
Indices: 104488056--104488116 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
104488046 TTTGTTTCTT
* *
104488056 TATTAATTTAAAT-T-ATTA
1 TATTAATATAAATATAATAA
*
104488074 TACTAATAT-AATATAATAA
1 TATTAATATAAATATAATAA
*
104488093 TATTAATATAAATATAATAC
1 TATTAATATAAATATAATAA
104488113 TATT
1 TATT
104488117 TACTTAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 3 0.09
18 8 0.23
19 11 0.31
20 13 0.37
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
TATTAATATAAATATAATAA
Found at i:104488686 original size:34 final size:35
Alignment explanation
Indices: 104488603--104488687 Score: 88
Period size: 34 Copynumber: 2.5 Consensus size: 35
104488593 TGTTATTTAA
104488603 ATAT-ATATATTTTTAATTTATTTTTAATTTGTTG
1 ATATAATATATTTTTAATTTATTTTTAATTTGTTG
** * *
104488637 GGA-AATATTTATTTTAA-TTA-TTTTAATATTTTTG
1 ATATAATATAT-TTTTAATTTATTTTTAAT-TTGTTG
104488671 ATATAATATATTTTTAA
1 ATATAATATATTTTTAA
104488688 AAATAATATA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
33 7 0.17
34 21 0.52
35 12 0.30
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (35 bp):
ATATAATATATTTTTAATTTATTTTTAATTTGTTG
Found at i:104493884 original size:20 final size:17
Alignment explanation
Indices: 104493847--104493885 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 17
104493837 ATGTAAATTA
104493847 AATTATTAAATTTTTTT
1 AATTATTAAATTTTTTT
104493864 AATTATTTATAATTATTTTT
1 AATTA-TTA-AATT-TTTTT
104493884 AA
1 AA
104493886 CCCATAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 3 0.16
19 4 0.21
20 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTATTAAATTTTTTT
Found at i:104494927 original size:17 final size:17
Alignment explanation
Indices: 104494905--104494938 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
104494895 TTTAAATTTT
104494905 ATAAAAGAAAATAAAAA
1 ATAAAAGAAAATAAAAA
*
104494922 ATAAAATAAAATAAAAA
1 ATAAAAGAAAATAAAAA
104494939 GTTTATACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (17 bp):
ATAAAAGAAAATAAAAA
Found at i:104497882 original size:94 final size:92
Alignment explanation
Indices: 104497523--104497963 Score: 343
Period size: 94 Copynumber: 4.8 Consensus size: 92
104497513 TCAACAAGTA
* * * *
104497523 GTTT-CTTTATAACTTTATAAAATTTAGTTAAGTGCCTTAAGAGGCTAGAAGCAATTCATCTATT
1 GTTTACTTTATAACTTTATAAAATTTAGCTAAGTGTCTTAAGAGGCTAGAAG-TATTCTTCTATT
* * ** ** *
104497587 AAATTCAGCAAGTTATTTATTCTTGGAGT
65 AAACTCAGCGAGCAATTTCCTCTAGG-GT
* * * * * * * * *
104497616 GTCTATTTTATAATTTTATAAAATTTAGTTAAGTGCCTTTAGAGACTAGAAGCAGTCTTTCTATT
1 GTTTACTTTATAACTTTATAAAATTTAGCTAAGTGTCTTAAGAGGCTAGAAGTATTC-TTCTATT
* * * *
104497681 AGACTCAACGAGCAGTTTCCTTTCAGGGT
65 AAACTCAGCGAGCAATTTCCTCT-AGGGT
** * * * *
104497710 GTTTGTTTTATAACTTTGTAAAA-TT---TAACTGTCTTAAGTGGCTAGAAGTAATCATTCTATT
1 GTTTACTTTATAACTTTATAAAATTTAGCTAAGTGTCTTAAGAGGCTAGAAGTATTC-TTCTATT
* *
104497771 AAACTTAGTGAGCAATTTCCTCCTAGGGT
65 AAACTCAGCGAGCAATTTCCT-CTAGGGT
* * * *
104497800 GTTTGCTTTATAACTTTATAAAATTTAGCTAAGTGTCTTATGAGGTTAGAAGTGATTCTTTTATT
1 GTTTACTTTATAACTTTATAAAATTTAGCTAAGTGTCTTAAGAGGCTAGAAGT-ATTCTTCTATT
* * * *
104497865 AAATTTAGCGAGCAATTTCCTATCGAGGT
65 AAACTCAGCGAGCAATTTCCTCTAG-GGT
* * * * * * *
104497894 GTCTACTTTAAAACTTTATAAAATGTAGCTAAGTGTCTTAAAAGGCTAGCAGTTTTTCTGCTATT
1 GTTTACTTTATAACTTTATAAAATTTAGCTAAGTGTCTTAAGAGGCTAGAAG-TATTCTTCTATT
104497959 AAACT
65 AAACT
104497964 TAGTGGGCCT
Statistics
Matches: 276, Mismatches: 61, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
90 70 0.25
91 3 0.01
93 10 0.04
94 187 0.68
95 6 0.02
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (92 bp):
GTTTACTTTATAACTTTATAAAATTTAGCTAAGTGTCTTAAGAGGCTAGAAGTATTCTTCTATTA
AACTCAGCGAGCAATTTCCTCTAGGGT
Found at i:104498625 original size:134 final size:131
Alignment explanation
Indices: 104498386--104498628 Score: 305
Period size: 134 Copynumber: 1.8 Consensus size: 131
104498376 GGAAATATAT
*
104498386 CAATATTTTTTTTACAATAAAATATATATTTACCTCTTGAGGTGTGCCTAAAAAGGCTAGGATGT
1 CAATATTTTTTTTACAATAAAATATATATTTACCTCTTGAAGTGTGCCTAAAAAGGCTAGGATGT
* *
104498451 GCTCACTTATTTACCAACCAGATACACATGGCACGGCATTTATTCATGCGTGACTCAAAAAAATA
66 GCTCACTTATTTACCAACAAGATACACATGGCACGACATTTATTCATGCGTGACTCAAAAAAATA
104498516 G
131 G
* *
104498517 CAATATTTTTTTACTACAA-AAAATATATA-TTACCTCTAATCGAAGTGTGCTTGAAAAGGCTAG
1 CAATATTTTTTT--TACAATAAAATATATATTTACCTCT--T-GAAGTGTGCCTAAAAAGGCTAG
* ** **
104498580 GATGTGCTC-GTCTATTTACCGGCAA-AGTACACATGGTGCGACATTTATT
61 GATGTGCTCACT-TATTTACCAACAAGA-TACACATGGCACGACATTTATT
104498629 TTGTTACTTG
Statistics
Matches: 95, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
131 20 0.21
132 10 0.11
133 8 0.08
134 57 0.60
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (131 bp):
CAATATTTTTTTTACAATAAAATATATATTTACCTCTTGAAGTGTGCCTAAAAAGGCTAGGATGT
GCTCACTTATTTACCAACAAGATACACATGGCACGACATTTATTCATGCGTGACTCAAAAAAATA
G
Found at i:104508877 original size:16 final size:18
Alignment explanation
Indices: 104508838--104508879 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
104508828 TAAATTTATA
104508838 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
104508855 ATTTTTATATATTATG-T
1 ATATTTATATATTATGTT
104508872 A-ATTTATA
1 ATATTTATA
104508880 ATACATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:104509079 original size:20 final size:20
Alignment explanation
Indices: 104509054--104509093 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
104509044 ATGTATGGAT
*
104509054 CTAAAATGAGCTTGGATTAA
1 CTAAAATGAGCTTAGATTAA
104509074 CTAAAATGAGCTTAGATTAA
1 CTAAAATGAGCTTAGATTAA
104509094 TCTTTTACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30
Consensus pattern (20 bp):
CTAAAATGAGCTTAGATTAA
Found at i:104511414 original size:33 final size:32
Alignment explanation
Indices: 104511356--104511459 Score: 118
Period size: 33 Copynumber: 3.2 Consensus size: 32
104511346 CCTTTCTAGT
* * * *
104511356 TGTACACCCGAAGTACACATTCCCTTTTGAAG
1 TGTACACACGAAGTGCACATACCCTTTTCAAG
* * *
104511388 TGGTACACACGAAGTGTATATACCCTTTTCAATT
1 T-GTACACACGAAGTGCACATACCCTTTTCAA-G
*
104511422 TGTACACACGAAGTGCACATAACCTTTTCAAG
1 TGTACACACGAAGTGCACATACCCTTTTCAAG
104511454 TGTACA
1 TGTACA
104511460 AATATAGTGT
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
32 7 0.12
33 51 0.86
34 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (32 bp):
TGTACACACGAAGTGCACATACCCTTTTCAAG
Found at i:104511518 original size:33 final size:33
Alignment explanation
Indices: 104511473--104511589 Score: 171
Period size: 33 Copynumber: 3.5 Consensus size: 33
104511463 ATAGTGTTCT
* *
104511473 TTTCTTTTTCAAGTAGTATACACAGAGTATACC
1 TTTCCTTTTCAAGTGGTATACACAGAGTATACC
*
104511506 TTTCCTTTTCAAGTGGTATACACAGAGTATCCC
1 TTTCCTTTTCAAGTGGTATACACAGAGTATACC
* * *
104511539 TTTCCTTTTCAAGTGGTATACACAAAGTATGCA
1 TTTCCTTTTCAAGTGGTATACACAGAGTATACC
*
104511572 TTTTCTTTTCAAGTGGTA
1 TTTCCTTTTCAAGTGGTA
104511590 CATTCCTTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 77 1.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (33 bp):
TTTCCTTTTCAAGTGGTATACACAGAGTATACC
Found at i:104512261 original size:20 final size:22
Alignment explanation
Indices: 104512221--104512261 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
104512211 TGTAAAAGTG
*
104512221 ATTTCTCTATCAATAACCTTTC
1 ATTTCTCTATCAATAAACTTTC
104512243 ATTTC-CTATC-ATAAACTTT
1 ATTTCTCTATCAATAAACTTT
104512262 AAATTTATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 5 0.28
22 5 0.28
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTTCTCTATCAATAAACTTTC
Found at i:104512323 original size:31 final size:31
Alignment explanation
Indices: 104512288--104512353 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
104512278 CATCAATGGG
104512288 TAATTCTCTAAACTTTGATTTTCTTTCAATT
1 TAATTCTCTAAACTTTGATTTTCTTTCAATT
104512319 TAATTCTCTAAACTTTGATTTTCTTTCAATT
1 TAATTCTCTAAACTTTGATTTTCTTTCAATT
104512350 TAAT
1 TAAT
104512354 CACCCAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.27, C:0.15, G:0.03, T:0.55
Consensus pattern (31 bp):
TAATTCTCTAAACTTTGATTTTCTTTCAATT
Found at i:104512678 original size:16 final size:16
Alignment explanation
Indices: 104512654--104512692 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
104512644 AGGACTTCTC
104512654 ACTTTTAATTC-TATA
1 ACTTTTAATTCTTATA
104512669 ACTATTTAATTCTTATA
1 ACT-TTTAATTCTTATA
104512686 ACTTTTA
1 ACTTTTA
104512693 GAATTTAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.14
16 12 0.55
17 7 0.32
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (16 bp):
ACTTTTAATTCTTATA
Found at i:104512768 original size:13 final size:13
Alignment explanation
Indices: 104512750--104512775 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104512740 ACACATAATT
104512750 GATAAAAATTTTC
1 GATAAAAATTTTC
104512763 GATAAAAATTTTC
1 GATAAAAATTTTC
104512776 ATGCAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
GATAAAAATTTTC
Found at i:104514049 original size:3 final size:3
Alignment explanation
Indices: 104514036--104514066 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
104514026 CCTTCTCCAT
104514036 CTC CATC CTC CTC CTC CTC CTC CTC CTC CTC
1 CTC C-TC CTC CTC CTC CTC CTC CTC CTC CTC
104514067 TTCATCACCG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.03, C:0.65, G:0.00, T:0.32
Consensus pattern (3 bp):
CTC
Found at i:104516840 original size:16 final size:16
Alignment explanation
Indices: 104516819--104516851 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
104516809 TTTGTTAATC
104516819 AATTCTCAATTGAGTT
1 AATTCTCAATTGAGTT
104516835 AATTCTCAATTGAGTT
1 AATTCTCAATTGAGTT
104516851 A
1 A
104516852 TTGTACCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (16 bp):
AATTCTCAATTGAGTT
Found at i:104519905 original size:26 final size:23
Alignment explanation
Indices: 104519838--104519906 Score: 68
Period size: 26 Copynumber: 2.9 Consensus size: 23
104519828 TTATTGAATT
*
104519838 TATATTATAAATTTTATT-TAAA
1 TATATTATAAATTTAATTATAAA
*
104519860 TATATTATAAAAATTAATTATATAA
1 TATATTAT-AAATTTAATTATA-AA
*
104519885 TATAATTATATAATTTGATTAT
1 TAT-ATTATA-AATTTAATTAT
104519907 TGTAAATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 2 0.05
25 6 0.16
26 14 0.37
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (23 bp):
TATATTATAAATTTAATTATAAA
Found at i:104519906 original size:13 final size:13
Alignment explanation
Indices: 104519874--104519898 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104519864 TTATAAAAAT
104519874 TAATTATATAATA
1 TAATTATATAATA
104519887 TAATTATATAAT
1 TAATTATATAAT
104519899 TTGATTATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTATATAATA
Found at i:104520845 original size:31 final size:31
Alignment explanation
Indices: 104520784--104520846 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 31
104520774 TGCATGATTA
* *
104520784 TATATATGAAACTTTAGTTTCAACTTTATAC
1 TATATATGAAACTTGAGTTTCAACTATATAC
104520815 TATATA-GAAACTTGAGATTT-AATCTATATAC
1 TATATATGAAACTTGAG-TTTCAA-CTATATAC
104520846 T
1 T
104520847 TTATTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 11 0.39
31 17 0.61
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (31 bp):
TATATATGAAACTTGAGTTTCAACTATATAC
Found at i:104523414 original size:35 final size:35
Alignment explanation
Indices: 104523368--104523439 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
104523358 CATCTCCGGA
* *
104523368 GCTTGGCAAATATGGAAAGTAATCTTCAAATATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* *
104523403 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
104523438 GC
1 GC
104523440 GATCCTAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:104533508 original size:43 final size:43
Alignment explanation
Indices: 104533447--104533531 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
104533437 TTAATAAAAA
104533447 GTAAATAGTTTTTAAACTTTGTATAGAAATTGCAATGATATTT
1 GTAAATAGTTTTTAAACTTTGTATAGAAATTGCAATGATATTT
104533490 GTAAATAGTTTTTAAACTTTGTATAGAAATTGCAATGATATT
1 GTAAATAGTTTTTAAACTTTGTATAGAAATTGCAATGATATT
104533532 GTACCCTTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.44
Consensus pattern (43 bp):
GTAAATAGTTTTTAAACTTTGTATAGAAATTGCAATGATATTT
Found at i:104538380 original size:8 final size:9
Alignment explanation
Indices: 104538352--104538389 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
104538342 CAACTTAATT
104538352 TATATTAAA
1 TATATTAAA
*
104538361 TAGATATAAA
1 TATAT-TAAA
104538371 TAT-TTAAA
1 TATATTAAA
104538379 TATATTAAA
1 TATATTAAA
104538388 TA
1 TA
104538390 AATTTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 7 0.28
9 12 0.48
10 6 0.24
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (9 bp):
TATATTAAA
Found at i:104540813 original size:29 final size:30
Alignment explanation
Indices: 104540746--104540824 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 30
104540736 AATTAAATCA
*
104540746 AAATCAAAGTTTTATGTATATATATGAACC
1 AAATCAAAGTTTCATGTATATATATGAACC
* *
104540776 ACAAGTC-AAGTTTCATGTGTATA-ATTATACC
1 A-AA-TCAAAGTTTCATGTATATATATGA-ACC
104540807 AAATCAAAG-TTCATGTAT
1 AAATCAAAGTTTCATGTAT
104540825 CAAATTATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
29 10 0.24
30 9 0.22
31 20 0.49
32 2 0.05
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (30 bp):
AAATCAAAGTTTCATGTATATATATGAACC
Found at i:104546476 original size:29 final size:30
Alignment explanation
Indices: 104546417--104546474 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
104546407 TCCGAGCCTT
*
104546417 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
104546447 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
104546475 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:104546704 original size:13 final size:13
Alignment explanation
Indices: 104546686--104546717 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
104546676 TTTCCAGCAA
104546686 TTATGAATTTATT
1 TTATGAATTTATT
104546699 TTATGAATTTATT
1 TTATGAATTTATT
*
104546712 TGATGA
1 TTATGA
104546718 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:104548832 original size:18 final size:19
Alignment explanation
Indices: 104548805--104548841 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
104548795 TTTCTTCTTC
*
104548805 GTTTTCTCTTA-TTTATTT
1 GTTTTATCTTATTTTATTT
104548823 GTTTTATCTTATTTTATTT
1 GTTTTATCTTATTTTATTT
104548842 TATTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.14, C:0.08, G:0.05, T:0.73
Consensus pattern (19 bp):
GTTTTATCTTATTTTATTT
Found at i:104552200 original size:19 final size:20
Alignment explanation
Indices: 104552160--104552203 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
104552150 GTTTCTTTTG
* *
104552160 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
104552179 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
104552198 GCATTA
1 GCATTA
104552204 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:104556957 original size:17 final size:17
Alignment explanation
Indices: 104556915--104556950 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
104556905 ATATTTTGTT
* *
104556915 AAAATAAAAATAAAAGA
1 AAAAGAAAAAGAAAAGA
104556932 AAAAGAAAAAGAAAAGA
1 AAAAGAAAAAGAAAAGA
104556949 AA
1 AA
104556951 TTGAAAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAGA
Found at i:104558019 original size:44 final size:44
Alignment explanation
Indices: 104557845--104558747 Score: 374
Period size: 44 Copynumber: 19.9 Consensus size: 44
104557835 TATTATGACG
* * * *
104557845 AATCTTATCTCCCTGAAA-ATGCAGTGGAGCAGATTGAAGCCACT
1 AATCTTATCTCCCT-AAAGTTGCAGTGGAACAGATTGAAGCTACA
* * * *
104557889 AATCCTATAC-CCCTGAAA-TTGCAGTGGGACA-ATTAAAGTTATCATGGCA
1 AATCTTAT-CTCCCT-AAAGTTGCAGTGGAACAGATTGAAG----C-T-ACA
* * * *
104557938 AATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCTATA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTACA
* * * * *
104557982 AACCTTATCTCCCTAAAGTTCCAGTAGAACAGGTTGAAGTTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTACA
* * * * * * *
104558026 AGTCTTATCTCCTTGAAGTTGTAGTGGAATAGACTGAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTA-CA
* * * * * *
104558071 AATCTTATCTCTCTAAAGTTACAGTAGAACAAATTAAAGCTATA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTACA
* * * * **
104558115 AACCTTATCTCCCTAAAGTTACAGTGGAACAGGTTAAAAATAAACAA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT--AC-A
*
104558162 AAT-TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGACTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATT---GA-AG-CTACA
* * * * *
104558210 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTACA
* * * * *
104558254 AACCTTATCTCTCTGAAGTTGCAGTGGAGCATG-TTGAAGTTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACA-GATTGAAGCTACA
* * * * *
104558298 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAACG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT-ACA
* * *
104558343 AATCTTATTTCCTTAAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTAC-----A
* * * * * * *
104558392 CAAGTCCTATAC-CTCTGAAGTTGCAATAGG-TCGGA-TGAAATCTATCA
1 -AA-TCTTAT-CTCCCTAAAGTTGCAGT-GGAACAGATTG-AAGCTA-CA
* * * * * * * **
104558439 TGGTGAATTTTATCTCCTTGATGTTGCAGTAGAGA-AGATTGAAACCATT
1 -----AATCTTATCTCCCTAAAGTTGCAGTGGA-ACAGATTGAAGCTACA
* * * * * *
104558488 AATCTTATCTCCCTAAAGATACAGTGGAGCAGATTAAAACCACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTACA
* * * * * *
104558532 AATCTTATTTCCTTAAAGTTGTAGTAGAGCA-AGTTGAAGTTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGA-TTGAAGCTACA
* * ** * * *
104558576 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATGGCG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT-ACA
* * * * * * *
104558621 AATTTTATCTCCTTGAAGTTTCAGTGGAGCAGATTGAAGATGC-
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTACA
* * * * * * * *
104558664 GATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGTAGATGCG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTACA
* * **
104558708 AGTC-TAGTCTCCCTAAAGTTACAGTGGAGTAGATTGAAGC
1 AATCTTA-TCTCCCTAAAGTTGCAGTGGAACAGATTGAAGC
104558748 ACTAATTCCT
Statistics
Matches: 644, Mismatches: 167, Indels: 96
0.71 0.18 0.11
Matches are distributed among these distances:
43 45 0.07
44 325 0.50
45 111 0.17
46 31 0.05
47 5 0.01
48 7 0.01
49 57 0.09
50 31 0.05
51 29 0.05
52 3 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTACA
Found at i:104558064 original size:88 final size:89
Alignment explanation
Indices: 104557940--104558374 Score: 280
Period size: 89 Copynumber: 4.8 Consensus size: 89
104557930 TCATGGCAAA
* * * * *
104557940 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCTA-TAAACCTTATCTCCCTAAAGTTCC
1 TCTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAGATAGCAAACCTTATCTCCCTAAAGTTAC
104558004 AGTAGAACAGGTTGAAGTTACAAG
66 AGTAGAACAGGTTGAAGTTACAAG
* * * * * *
104558028 TCTTATCTCCTTGAAGTTGTAGTGGAATAGACTGAAGATAGCAAATCTTATCTCTCTAAAGTTAC
1 TCTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAGATAGCAAACCTTATCTCCCTAAAGTTAC
** * * * *
104558093 AGTAGAACAAATTAAAGCTATAAA
66 AGTAGAACAGGTTGAAGTTACAAG
* * * * ** * * * ** *
104558117 CCTTATCTCCCTAAAGTTACAGTGGAACAGGTTAAAAATAAACAAAATTTATCTCCCTAAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAGAT-AGCAAACCTTATCTCCCTAAAGTTA
* * * *
104558182 CAGTGGAGCAGATTGAAGATAGACTACAAA
65 CAGTAGAACAGGTTGAAG-T----TACAAG
* ** * * * ** * * * *
104558212 TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCA-CGAACCTTATCTCTCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAGATAGCAAACCTTATCTCCCTAAAGTTAC
* * *
104558276 AGTGGAGCATGTTGAAGTTACAAG
66 AGTAGAACAGGTTGAAGTTACAAG
* * * * * * * * *
104558300 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAACGAATCTTATTTCCTTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAGATAGCAAACCTTATCTCCCTAAAGTTAC
*
104558365 AGTGGAACAG
66 AGTAGAACAG
104558375 ATTAAAGCTA
Statistics
Matches: 273, Mismatches: 66, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
88 73 0.27
89 94 0.34
90 34 0.12
92 1 0.00
93 34 0.12
94 1 0.00
95 36 0.13
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (89 bp):
TCTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAGATAGCAAACCTTATCTCCCTAAAGTTAC
AGTAGAACAGGTTGAAGTTACAAG
Found at i:104558120 original size:133 final size:133
Alignment explanation
Indices: 104557935--104558384 Score: 524
Period size: 133 Copynumber: 3.3 Consensus size: 133
104557925 AGTTATCATG
* ** * *
104557935 GCAAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCTATAAACCTTATCTCCCTAAAG
1 GCAAATCTTATCTCCCTAAAGTTGCAGTAGAACAGATTAAAGCTATAAACCTTATCTCCCTAAAG
* * * * * **
104558000 TTCCAGTAGAACAGGTTGAAGTTACAAGTCTTATCTCCTTGAAGTTGTAGTGGAATAGACTGAAG
66 TTACAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
104558065 ATA
131 ATA
* * *
104558068 GCAAATCTTATCTCTCTAAAGTTACAGTAGAACAAATTAAAGCTATAAACCTTATCTCCCTAAAG
1 GCAAATCTTATCTCCCTAAAGTTGCAGTAGAACAGATTAAAGCTATAAACCTTATCTCCCTAAAG
* * * * *
104558133 TTACAGTGGAACAGGTTAAAAATAAACAAAAT-TTATCTCCCTAAAGTTGCAGTGGAGCAGATTG
66 TTACAGTGGAACAGGTT-GAAGT-TAC-AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTG
104558197 AAGATA
128 AAGATA
* * ** *
104558203 GACTACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACGAACCTTATCTCTCT
1 G----CAAATCTTATCTCCCTAAAGTTGCAGTAGAACAGATTAAAGCTATAAACCTTATCTCCCT
* * * *
104558268 GAAGTTGCAGTGGAGCATGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT
62 AAAGTTACAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT
104558333 GAAGATA
127 GAAGATA
* * * * *
104558340 ACGAATCTTATTTCCTTAAAGTTGCAGTGGAACAGATTAAAGCTA
1 GCAAATCTTATCTCCCTAAAGTTGCAGTAGAACAGATTAAAGCTA
104558385 CGAGTTACAA
Statistics
Matches: 265, Mismatches: 44, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
133 110 0.42
134 3 0.01
135 35 0.13
136 6 0.02
137 39 0.15
138 3 0.01
139 69 0.26
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (133 bp):
GCAAATCTTATCTCCCTAAAGTTGCAGTAGAACAGATTAAAGCTATAAACCTTATCTCCCTAAAG
TTACAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
ATA
Found at i:104558186 original size:46 final size:49
Alignment explanation
Indices: 104558118--104558247 Score: 167
Period size: 46 Copynumber: 2.7 Consensus size: 49
104558108 AGCTATAAAC
* *
104558118 CTTATCTCCCTAAAGTTACAGTGGAACAGGTTAAAAATAAAC-A-AAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAAATAAACTACAAAT
* * * *
104558165 -TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGACTACAAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAAATAAACTACAAAT
* *
104558213 CTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAA
1 CTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAA
104558248 GCCACGAACC
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
46 35 0.49
47 1 0.01
48 4 0.06
49 32 0.44
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (49 bp):
CTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAAATAAACTACAAAT
Found at i:104558630 original size:45 final size:43
Alignment explanation
Indices: 104558580--104558746 Score: 181
Period size: 43 Copynumber: 3.8 Consensus size: 43
104558570 GTTACAAATC
* *
104558580 TTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATGGCGAATT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-GCG-ATT
* * *
104558625 TTATCTCCTTGAAGTTTCAGTGGAGCAGATTGAAGATGCGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATGCGATT
* * * * *
104558668 TTATTTCCCTGAAGTTGTAGTGGAACAGATTGTAGATGCGAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATGCGATT
* * * *
104558711 CTAGTCTCCCTAAAGTTACAGTGGAGTAGATTGAAG
1 TTA-TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
104558747 CACTAATTCC
Statistics
Matches: 100, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
43 39 0.39
44 28 0.28
45 33 0.33
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATGCGATT
Found at i:104561688 original size:14 final size:14
Alignment explanation
Indices: 104561671--104561699 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
104561661 CTATTTTATG
104561671 TGTTTGTTTTTTTC
1 TGTTTGTTTTTTTC
104561685 TGTTTGTTTTTTTC
1 TGTTTGTTTTTTTC
104561699 T
1 T
104561700 TTACTCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.14, T:0.79
Consensus pattern (14 bp):
TGTTTGTTTTTTTC
Found at i:104561781 original size:19 final size:18
Alignment explanation
Indices: 104561742--104561791 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 18
104561732 TATACATATT
104561742 TTATCTATTTCATTTTTTTA
1 TTATCTA-TT-ATTTTTTTA
104561762 -TATTCTATTATTTTTATTA
1 TTA-TCTATTATTTTT-TTA
104561781 TTATCTATTAT
1 TTATCTATTAT
104561792 GTATTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 6 0.22
19 15 0.56
20 6 0.22
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATCTATTATTTTTTTA
Found at i:104563637 original size:25 final size:25
Alignment explanation
Indices: 104563584--104563637 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
104563574 TACTTTACCG
* *
104563584 TTCTTTTTTTTTCTTTTTTCCTATT
1 TTCTTTTTTTTTCTTTTTGCCTATC
*
104563609 TTCTTTTATTTTTCTTTTTGCTTA-C
1 TTCTTTT-TTTTTCTTTTTGCCTATC
104563634 TTCT
1 TTCT
104563638 ATAAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.76
Consensus pattern (25 bp):
TTCTTTTTTTTTCTTTTTGCCTATC
Found at i:104565150 original size:21 final size:21
Alignment explanation
Indices: 104565126--104565190 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
104565116 CATTCACACA
*
104565126 GGCATGTGTAACTTCTACATG
1 GGCATGTGTAACTTCCACATG
104565147 GGCATGTGTAACTTCCACATG
1 GGCATGTGTAACTTCCACATG
*
104565168 GGCATGTGTAACTTCCATATG
1 GGCATGTGTAACTTCCACATG
104565189 GG
1 GG
104565191 TGTGTAGACC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (21 bp):
GGCATGTGTAACTTCCACATG
Found at i:104574566 original size:31 final size:32
Alignment explanation
Indices: 104574519--104574594 Score: 136
Period size: 31 Copynumber: 2.4 Consensus size: 32
104574509 ACGTTATTCA
104574519 TTTTCTTTCTTGCTCTCTGCCACTTTTTCCCT
1 TTTTCTTTCTTGCTCTCTGCCACTTTTTCCCT
104574551 TTTTCTTT-TTGCTCTCTGCCACTTTTTCCCT
1 TTTTCTTTCTTGCTCTCTGCCACTTTTTCCCT
*
104574582 TTCTCTTTCTTGC
1 TTTTCTTTCTTGC
104574595 CGTCGAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
31 30 0.71
32 12 0.29
ACGTcount: A:0.03, C:0.33, G:0.07, T:0.58
Consensus pattern (32 bp):
TTTTCTTTCTTGCTCTCTGCCACTTTTTCCCT
Found at i:104581506 original size:32 final size:32
Alignment explanation
Indices: 104581463--104581541 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
104581453 TTTGAAGTTA
*
104581463 TTCC-TTTTCTTTCTTGTTCTCTGCCACTTTT
1 TTCCTTTTTCTTTCTTGCTCTCTGCCACTTTT
104581494 TTCCTTTTTCTTTCTTGCTCTCTGCCACTTTT
1 TTCCTTTTTCTTTCTTGCTCTCTGCCACTTTT
* *
104581526 TCCCTTTTTCCTTCTT
1 TTCCTTTTTCTTTCTT
104581542 ACCTCCATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 4 0.09
32 40 0.91
ACGTcount: A:0.03, C:0.32, G:0.05, T:0.61
Consensus pattern (32 bp):
TTCCTTTTTCTTTCTTGCTCTCTGCCACTTTT
Found at i:104584049 original size:3 final size:3
Alignment explanation
Indices: 104584043--104584068 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
104584033 ATCTAGTTTT
104584043 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
104584069 CAGTTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:104586805 original size:13 final size:13
Alignment explanation
Indices: 104586789--104586818 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
104586779 AGTGCTGCAA
104586789 AAAAATGCTTATG
1 AAAAATGCTTATG
*
104586802 AAAAATGCTTTTG
1 AAAAATGCTTATG
104586815 AAAA
1 AAAA
104586819 GCTTGGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (13 bp):
AAAAATGCTTATG
Found at i:104588415 original size:16 final size:18
Alignment explanation
Indices: 104588378--104588412 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
104588368 AATACTAAGA
104588378 ATTT-TATTAAATTATAT
1 ATTTATATTAAATTATAT
104588395 ATTTATATTAAATTATAT
1 ATTTATATTAAATTATAT
104588413 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTATATTAAATTATAT
Found at i:104588424 original size:16 final size:17
Alignment explanation
Indices: 104588385--104588430 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
104588375 AGAATTTTAT
* *
104588385 TAAATTATATATTTATAT
1 TAAATTATAT-TTAATAA
104588403 TAAATTATATTTAATAA
1 TAAATTATATTTAATAA
104588420 T-AATTAT-TTTA
1 TAAATTATATTTA
104588431 GATTATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 4 0.15
16 6 0.23
17 6 0.23
18 10 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAATTATATTTAATAA
Found at i:104588426 original size:26 final size:25
Alignment explanation
Indices: 104588397--104588453 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
104588387 AATTATATAT
104588397 TTATATTAAATTATATTTAATAATAA
1 TTATATTAAATTATATTTAATAAT-A
* * * *
104588423 TTATTTTAGATTATATTTTATAGTA
1 TTATATTAAATTATATTTAATAATA
104588448 TTATAT
1 TTATAT
104588454 ATTATGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATATTAAATTATATTTAATAATA
Found at i:104588458 original size:120 final size:119
Alignment explanation
Indices: 104588301--104588607 Score: 526
Period size: 120 Copynumber: 2.6 Consensus size: 119
104588291 CCACAAAATC
*
104588301 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCGTATAAGAATAT
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
104588366 TTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
66 TTAATACTAAGAATTTTATTAAATTATAT-TTTATATTAAATTATATTTAATAAT
104588421 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA-
* *
104588486 TTTAATATTAAGAATTTTATTAAATTATATTTTTTATTAAATTATATTTAATAAT
65 TTTAATACTAAGAATTTTATTAAATTATATTTTATATTAAATTATATTTAATAAT
* * * *
104588541 TATTATTTTAAATTATATTTTATACTATTATATATTATAATTTTAGTAAATTCATATAAGAAT-T
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
104588605 TTA
66 TTA
104588608 TTAAATTATA
Statistics
Matches: 179, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
118 4 0.02
120 146 0.82
121 29 0.16
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (119 bp):
AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
TTAATACTAAGAATTTTATTAAATTATATTTTATATTAAATTATATTTAATAAT
Found at i:104588515 original size:22 final size:21
Alignment explanation
Indices: 104588498--104588662 Score: 82
Period size: 22 Copynumber: 8.0 Consensus size: 21
104588488 TAATATTAAG
104588498 AATTTTATTAAATTATA-T-T
1 AATTTTATTAAATTATATTAT
104588517 --TTTTATTAAATTATATTTAAT
1 AATTTTATTAAATTATA-TT-AT
104588538 AATTATTATTTTAAATTATATT-T
1 AATT-TTA--TTAAATTATATTAT
* **
104588561 TATACTATT--A-TATATTAT
1 AATTTTATTAAATTATATTAT
* * *
104588579 AATTTTAGTAAATTCATATAAG
1 AATTTTATTAAATT-ATATTAT
*
104588601 AATTTTATTAAATTATAATAT
1 AATTTTATTAAATTATATTAT
* *
104588622 -ATTTAATTATAATTATGTT-T
1 AATTTTATTA-AATTATATTAT
* *
104588642 AAATATGATTAAATTAT-TTAT
1 -AATTTTATTAAATTATATTAT
104588663 TATTGATAAT
Statistics
Matches: 110, Mismatches: 18, Indels: 34
0.68 0.11 0.21
Matches are distributed among these distances:
17 21 0.19
18 7 0.06
19 1 0.01
20 14 0.13
21 20 0.18
22 27 0.25
23 5 0.05
24 3 0.03
25 2 0.02
26 10 0.09
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (21 bp):
AATTTTATTAAATTATATTAT
Found at i:104588520 original size:17 final size:17
Alignment explanation
Indices: 104588500--104588534 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
104588490 ATATTAAGAA
104588500 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
104588517 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
104588534 T
1 T
104588535 AATAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTATTAAATTATATT
Found at i:104588543 original size:13 final size:13
Alignment explanation
Indices: 104588525--104588582 Score: 64
Period size: 13 Copynumber: 4.3 Consensus size: 13
104588515 TTTTTTATTA
*
104588525 AATTATATTTAAT
1 AATTATATTTTAT
104588538 AATTATTATTTTA-
1 AATTA-TATTTTAT
104588551 AATTATATTTTAT
1 AATTATATTTTAT
*
104588564 ACTATTATATATTAT
1 A--ATTATATTTTAT
104588579 AATT
1 AATT
104588583 TTAGTAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
12 7 0.18
13 14 0.36
14 6 0.15
15 12 0.31
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (13 bp):
AATTATATTTTAT
Found at i:104588631 original size:60 final size:58
Alignment explanation
Indices: 104588446--104588637 Score: 162
Period size: 60 Copynumber: 3.2 Consensus size: 58
104588436 TATTTTATAG
* *
104588446 TATTATATATTATGATTTTAGTAAATTCATATAAGAATATT-TTAATATTA-AGA-AT-TT
1 TATTATA-ATTATAATTTTAGTAAATTCATATAAGAATTTTATTAA-ATTATA-ATATATT
* * * * * *
104588503 TATTA-AATTATATTTTTTATTAAATT-ATATTTAATAATTATTATTTTAAATTATATTTTATAC
1 TATTATAATTATA-ATTTTAGTAAATTCATA--TAAGAATT-TTA--TTAAATTATAATATAT-T
104588566 TATTATATATTATAATTTTAGTAAATTCATATAAGAATTTTATTAAATTATAATATATT
1 TATTATA-ATTATAATTTTAGTAAATTCATATAAGAATTTTATTAAATTATAATATATT
104588625 TAATTATAATTAT
1 T-ATTATAATTAT
104588638 GTTTAAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 28
0.72 0.09 0.19
Matches are distributed among these distances:
55 8 0.08
56 12 0.11
57 11 0.10
58 2 0.02
59 6 0.06
60 24 0.23
61 6 0.06
62 4 0.04
63 12 0.11
64 12 0.11
65 9 0.08
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (58 bp):
TATTATAATTATAATTTTAGTAAATTCATATAAGAATTTTATTAAATTATAATATATT
Found at i:104588874 original size:45 final size:44
Alignment explanation
Indices: 104588788--104588878 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
104588778 ACCTCTATTC
* *
104588788 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTAATCCATTA
*** *
104588832 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTAATCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTAATCCATTA
104588877 CA
1 CA
104588879 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTAATCCATTA
Found at i:104588878 original size:16 final size:16
Alignment explanation
Indices: 104588857--104588926 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
104588847 TTGATTTGCT
104588857 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
104588873 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
104588889 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
104588905 ATTACGCCTCTAATCC
1 ATTACACCTCTAATCC
*
104588921 AATACA
1 ATTACA
104588927 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.31, C:0.36, G:0.01, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:104597327 original size:13 final size:13
Alignment explanation
Indices: 104597309--104597334 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104597299 GCGTGTGGGC
104597309 CCACATGGGCATG
1 CCACATGGGCATG
104597322 CCACATGGGCATG
1 CCACATGGGCATG
104597335 TGATATTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
CCACATGGGCATG
Found at i:104597427 original size:31 final size:31
Alignment explanation
Indices: 104597392--104597474 Score: 157
Period size: 31 Copynumber: 2.7 Consensus size: 31
104597382 GGCATGTGGA
*
104597392 CCACATAGGCGTGTGGGCCCACACGGGCACG
1 CCACATGGGCGTGTGGGCCCACACGGGCACG
104597423 CCACATGGGCGTGTGGGCCCACACGGGCACG
1 CCACATGGGCGTGTGGGCCCACACGGGCACG
104597454 CCACATGGGCGTGTGGGCCCA
1 CCACATGGGCGTGTGGGCCCA
104597475 TTTAGCTAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.17, C:0.35, G:0.37, T:0.11
Consensus pattern (31 bp):
CCACATGGGCGTGTGGGCCCACACGGGCACG
Found at i:104599100 original size:22 final size:22
Alignment explanation
Indices: 104599075--104599120 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
104599065 TCTCTGAGTC
*
104599075 ATTCGGCCGGTGATGACGCATT
1 ATTCGGCCGATGATGACGCATT
*
104599097 ATTCGGCTGATGATGACGCATT
1 ATTCGGCCGATGATGACGCATT
104599119 AT
1 AT
104599121 CCCAGGCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (22 bp):
ATTCGGCCGATGATGACGCATT
Found at i:104603577 original size:41 final size:41
Alignment explanation
Indices: 104603523--104603768 Score: 307
Period size: 41 Copynumber: 6.0 Consensus size: 41
104603513 ATTGTAAAAC
* * *
104603523 ACAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAA-A
1 ACAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAGA
*
104603564 ACAGAACATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
1 ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
* * *
104603605 CCAGAGCATTAGCGGCGCTTTTGGTGAAATGCCGCTAAAGA
1 ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
* * * *
104603646 CCAGATCATTAGCAGCGCTTTTGGTGAAACGCCGCTAAAGA
1 ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
* * * * * *
104603687 CCAGAGCATTAGTGGCGCTTTTAGTGAAACGCTGCTCAAG-
1 ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
104603727 ACTAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
1 AC-AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
104603769 TACCAACTAG
Statistics
Matches: 179, Mismatches: 23, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
40 21 0.12
41 158 0.88
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (41 bp):
ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
Found at i:104603664 original size:82 final size:82
Alignment explanation
Indices: 104603524--104603768 Score: 339
Period size: 82 Copynumber: 3.0 Consensus size: 82
104603514 TTGTAAAACA
* * * * *
104603524 CAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAA-AACAGAACATTAGCGGCGCTTTTGG
1 CAGAGCATTAGCGGCG-CTTTTGGTGAAACGCCGCTAAAGACCAGAACATTAGCGGCGCTTTTGG
104603588 TAAAACGCCGCTAAAGAC
65 TAAAACGCCGCTAAAGAC
* * *
104603606 CAGAGCATTAGCGGCGCTTTTGGTGAAATGCCGCTAAAGACCAGATCATTAGCAGCGCTTTTGGT
1 CAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAGACCAGAACATTAGCGGCGCTTTTGGT
*
104603671 GAAACGCCGCTAAAGAC
66 AAAACGCCGCTAAAGAC
* * * * * *
104603688 CAGAGCATTAGTGGCGCTTTTAGTGAAACGCTGCTCAAGACTAGAGCATTAGCGGCGCTTTTGGT
1 CAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAGACCAGAACATTAGCGGCGCTTTTGGT
104603753 AAAACGCCGCTAAAGA
66 AAAACGCCGCTAAAGA
104603769 TACCAACTAG
Statistics
Matches: 144, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
81 18 0.12
82 126 0.88
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (82 bp):
CAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAGACCAGAACATTAGCGGCGCTTTTGGT
AAAACGCCGCTAAAGAC
Found at i:104603826 original size:15 final size:14
Alignment explanation
Indices: 104603806--104603840 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
104603796 ACTATTTTAA
*
104603806 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
104603820 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
104603835 GGTTTA
1 GGTTTA
104603841 AAGGTAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:104603952 original size:8 final size:7
Alignment explanation
Indices: 104603801--104603959 Score: 88
Period size: 7 Copynumber: 21.7 Consensus size: 7
104603791 GTCTCACTAT
*
104603801 TTTAAGG
1 TTTAGGG
*
104603808 TTTATGG
1 TTTAGGG
*
104603815 ATTATGGG
1 TTTA-GGG
104603823 TTTAGGG
1 TTTAGGG
* *
104603830 ATTATGG
1 TTTAGGG
104603837 TTTAAAGGTAG
1 TTT--AGG--G
104603848 TTTAAGGG
1 TTT-AGGG
*
104603856 -TTGGGG
1 TTTAGGG
**
104603862 TTTAAAG
1 TTTAGGG
104603869 TTTA-GG
1 TTTAGGG
104603875 TGTTAGGG
1 T-TTAGGG
*
104603883 GTTAGGGG
1 TTTA-GGG
*
104603891 TTCAGGG
1 TTTAGGG
104603898 TTTAGGG
1 TTTAGGG
*
104603905 TTCAGGG
1 TTTAGGG
* *
104603912 TTTATGT
1 TTTAGGG
104603919 TTTAGGG
1 TTTAGGG
**
104603926 TTTAATG
1 TTTAGGG
104603933 TTTAGGG
1 TTTAGGG
104603940 TTTAGGAG
1 TTTAGG-G
104603948 TTTAGGG
1 TTTAGGG
104603955 TTTAG
1 TTTAG
104603960 ATTAGTTAGT
Statistics
Matches: 115, Mismatches: 27, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
6 5 0.04
7 80 0.70
8 20 0.17
9 2 0.02
10 4 0.03
11 4 0.03
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:104604595 original size:16 final size:16
Alignment explanation
Indices: 104604574--104604617 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
104604564 AAAAATCTTC
104604574 ATAAAAAATTTAAAAA
1 ATAAAAAATTTAAAAA
104604590 ATAAAAAA--TAAAAA
1 ATAAAAAATTTAAAAA
*
104604604 ACTTAAAAATTTAA
1 A-TAAAAAATTTAA
104604618 TATTTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 7 0.29
15 6 0.25
16 8 0.33
17 3 0.12
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (16 bp):
ATAAAAAATTTAAAAA
Found at i:104604638 original size:15 final size:14
Alignment explanation
Indices: 104604609--104604636 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
104604599 AAAAAACTTA
104604609 AAAATTTAATATTT
1 AAAATTTAATATTT
104604623 AAAATTTAATATTT
1 AAAATTTAATATTT
104604637 TAGTTCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAAATTTAATATTT
Found at i:104608368 original size:27 final size:28
Alignment explanation
Indices: 104608333--104608386 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
104608323 TATTTTGATA
104608333 ATGAATTTTA-AACT-TTTTATATTTTTC
1 ATGAATTTTATAA-TATTTTATATTTTTC
* *
104608360 ATGACTTTTATAATATTTTATTTTTTT
1 ATGAATTTTATAATATTTTATATTTTT
104608387 AAATTTTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.63
Consensus pattern (28 bp):
ATGAATTTTATAATATTTTATATTTTTC
Found at i:104608464 original size:43 final size:43
Alignment explanation
Indices: 104608399--104608501 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
104608389 ATTTTATGAC
**** *
104608399 CTTTAGCGGCGTTTGCGGGAAAAGCGACGCGAAAAGTCTTGGT
1 CTTTAGCGGCGTTTTTTAGAAAAGCGACGCGAAAAGTCCTGGT
* * *
104608442 CTTTAGCGGCGTTTTTTAGAAAAGTGTCGCTAAAAGTCCTGGT
1 CTTTAGCGGCGTTTTTTAGAAAAGCGACGCGAAAAGTCCTGGT
*
104608485 CTTTAGCGGCATTTTTT
1 CTTTAGCGGCGTTTTTT
104608502 TTCGGAAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
CTTTAGCGGCGTTTTTTAGAAAAGCGACGCGAAAAGTCCTGGT
Found at i:104611206 original size:12 final size:12
Alignment explanation
Indices: 104611172--104611213 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
104611162 TTTTAAAGTA
* *
104611172 TTATCATTATGC
1 TTATAATTATTC
104611184 TTATAATTATTC
1 TTATAATTATTC
*
104611196 TTATAATTATTA
1 TTATAATTATTC
104611208 TTATAA
1 TTATAA
104611214 AAATTATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (12 bp):
TTATAATTATTC
Found at i:104611344 original size:3 final size:3
Alignment explanation
Indices: 104611336--104611361 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
104611326 ATCTAGTTTT
104611336 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
104611362 CAATTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:104611921 original size:32 final size:32
Alignment explanation
Indices: 104611880--104611943 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
104611870 ATTTGTAAAA
104611880 GATGCATGGCCATAACCCTTAAATTCATTATC
1 GATGCATGGCCATAACCCTTAAATTCATTATC
104611912 GATGCATGGCCATAACCCTTAAATTCATTATC
1 GATGCATGGCCATAACCCTTAAATTCATTATC
104611944 TTATAACCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (32 bp):
GATGCATGGCCATAACCCTTAAATTCATTATC
Found at i:104612407 original size:18 final size:19
Alignment explanation
Indices: 104612344--104612420 Score: 59
Period size: 19 Copynumber: 4.2 Consensus size: 19
104612334 AAAATTATCA
* * *
104612344 TTTTAGAAAAATTTTAAAT
1 TTTTATAAATATTTAAAAT
* *
104612363 TTTTTTATATATTTAAAA-
1 TTTTATAAATATTTAAAAT
*** *
104612381 AAGTATAAA-ATTTATAAT
1 TTTTATAAATATTTAAAAT
104612399 TTTTATAAATATTTAAAAT
1 TTTTATAAATATTTAAAAT
104612418 TTT
1 TTT
104612421 AAAAATTATT
Statistics
Matches: 41, Mismatches: 15, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
17 7 0.17
18 10 0.24
19 24 0.59
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (19 bp):
TTTTATAAATATTTAAAAT
Found at i:104620052 original size:23 final size:25
Alignment explanation
Indices: 104620022--104620078 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 25
104620012 GAAAATATAA
*
104620022 AAAATAAAATATTTT-TTA-AATTT
1 AAAATAAAATATTTTAATATAATTT
104620045 AAAATAAAATATTTTAATATAATTT
1 AAAATAAAATATTTTAATATAATTT
*
104620070 AATATAAAA
1 AAAATAAAA
104620079 ATAATTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 15 0.50
24 2 0.07
25 13 0.43
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
AAAATAAAATATTTTAATATAATTT
Found at i:104620140 original size:26 final size:27
Alignment explanation
Indices: 104620049--104620159 Score: 74
Period size: 26 Copynumber: 4.2 Consensus size: 27
104620039 AAATTTAAAA
* *
104620049 TAAAATAT-TTTAATATAAT-TTAATAT
1 TAAAATATATTTAATA-AATAATCATAT
* *
104620075 AAAAATA-ATTATATTAAA-AAT-ATTAT
1 TAAAATATATT-TAATAAATAATCA-TAT
* *
104620101 TAAATTATATTTAAT-AATAATTATAT
1 TAAAATATATTTAATAAATAATCATAT
*
104620127 TAAAATATGA-TTAATAAATAATCCTAT
1 TAAAATAT-ATTTAATAAATAATCATAT
104620154 TAAAAT
1 TAAAAT
104620160 GTAATAACAA
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
25 3 0.04
26 40 0.60
27 24 0.36
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (27 bp):
TAAAATATATTTAATAAATAATCATAT
Found at i:104620146 original size:27 final size:26
Alignment explanation
Indices: 104620098--104620159 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
104620088 TTAAAAATAT
* *
104620098 TATTAAATTATATTTAATAATAATTA
1 TATTAAAATATATTTAATAATAATCA
*
104620124 TATTAAAATATGA-TTAATAAATAATCC
1 TATTAAAATAT-ATTTAAT-AATAATCA
104620151 TATTAAAAT
1 TATTAAAAT
104620160 GTAATAACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.48
27 16 0.52
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (26 bp):
TATTAAAATATATTTAATAATAATCA
Found at i:104625529 original size:21 final size:20
Alignment explanation
Indices: 104625475--104625529 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
104625465 CCCAAAAAAT
* *
104625475 ATTTAATGTGTATACTTGAA
1 ATTTAATTTGTATACATGAA
*
104625495 ACTCTAA-TTGTATACATGAA
1 A-TTTAATTTGTATACATGAA
104625515 ATTTAATTTGGTATA
1 ATTTAATTT-GTATA
104625530 ATTACACACA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
19 4 0.14
20 15 0.54
21 9 0.32
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (20 bp):
ATTTAATTTGTATACATGAA
Found at i:104647710 original size:26 final size:26
Alignment explanation
Indices: 104647681--104647788 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
104647671 TGGTACAAAT
104647681 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
104647707 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
104647733 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
104647759 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
104647785 TGAT
1 TGAT
104647789 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:104649419 original size:27 final size:28
Alignment explanation
Indices: 104649371--104649498 Score: 176
Period size: 27 Copynumber: 4.7 Consensus size: 28
104649361 GGAAGCGTCT
*
104649371 TGGTGGCTATGCCACAAT-TATCTGATC
1 TGGTGGCTCTGCCACAATATATCTGATC
*
104649398 TGGTGGCTCTGTCA-AATATATCTG-TC
1 TGGTGGCTCTGCCACAATATATCTGATC
*
104649424 TTGGTGGCTATGCCACAAT-TATCTGATC
1 -TGGTGGCTCTGCCACAATATATCTGATC
*
104649452 TGGTGGCTCTGCCAC-ATATATCTGTTC
1 TGGTGGCTCTGCCACAATATATCTGATC
104649479 TGGTGGCTCTGCCACAATAT
1 TGGTGGCTCTGCCACAATAT
104649499 CGGTATCTGG
Statistics
Matches: 89, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.08
27 73 0.82
28 9 0.10
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAATATATCTGATC
Found at i:104649449 original size:54 final size:54
Alignment explanation
Indices: 104649367--104649525 Score: 223
Period size: 54 Copynumber: 2.9 Consensus size: 54
104649357 TGGAGGAAGC
104649367 GTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCAAATATATCT
1 GTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCAAATATATCT
* *
104649421 GTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCAAATATATCT
* * * *
104649475 GT-TCTGGTGGCTCTGCCACAA-TATCGGTATCTGGTGACTTTGTCACAATAT
1 GTCT-TGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGTCA-AATAT
104649526 CTGGCAGCCT
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
53 6 0.06
54 84 0.89
55 4 0.04
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (54 bp):
GTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCAAATATATCT
Found at i:104649507 original size:27 final size:27
Alignment explanation
Indices: 104649371--104649528 Score: 171
Period size: 27 Copynumber: 5.9 Consensus size: 27
104649361 GGAAGCGTCT
*
104649371 TGGTGGCTATGCCACAATTATCTG-ATC
1 TGGTGGCTCTGCCACAA-TATCTGTATC
* * *
104649398 TGGTGGCTCTGTCAAATATATCTGTCT-
1 TGGTGGCTCTGCCACA-ATATCTGTATC
*
104649425 TGGTGGCTATGCCACAATTATCTG-ATC
1 TGGTGGCTCTGCCACAA-TATCTGTATC
104649452 TGGTGGCTCTGCCACATATATCTGT-TC
1 TGGTGGCTCTGCCACA-ATATCTGTATC
*
104649479 TGGTGGCTCTGCCACAATATCGGTATC
1 TGGTGGCTCTGCCACAATATCTGTATC
* * *
104649506 TGGTGACTTTGTCACAATATCTG
1 TGGTGGCTCTGCCACAATATCTG
104649529 GCAGCCTCAC
Statistics
Matches: 110, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
26 9 0.08
27 98 0.89
28 3 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATATCTGTATC
Found at i:104649510 original size:81 final size:80
Alignment explanation
Indices: 104649371--104649528 Score: 194
Period size: 81 Copynumber: 2.0 Consensus size: 80
104649361 GGAAGCGTCT
* * * *
104649371 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCAAATATATCTGTCTTGGTGGCTATG
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCAAATATATCGGTATTGGTGACTATG
104649436 CCACAATTATCTGATC
66 CCACAA-TATCTGATC
* * * *
104649452 TGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCGGTATCTGGTGACTT
1 TGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCAAATATATCGGTAT-TGGTGACTA
*
104649515 TGTCACAATATCTG
64 TGCCACAATATCTG
104649529 GCAGCCTCAC
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
80 16 0.24
81 50 0.76
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (80 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCAAATATATCGGTATTGGTGACTATG
CCACAATATCTGATC
Found at i:104651221 original size:24 final size:25
Alignment explanation
Indices: 104651194--104651248 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
104651184 TTAGCTAAAA
*
104651194 TGTGTTGTAT-ATTTGATGCATATT
1 TGTGTTGTATAATTTCATGCATATT
* * *
104651218 TGTGGTATATAATTTCATGCATTTT
1 TGTGTTGTATAATTTCATGCATATT
104651243 TG-GTTG
1 TGTGTTG
104651249 AAATTAGAGT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.20, C:0.05, G:0.22, T:0.53
Consensus pattern (25 bp):
TGTGTTGTATAATTTCATGCATATT
Found at i:104651401 original size:36 final size:36
Alignment explanation
Indices: 104651354--104651423 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 36
104651344 TCATTTATGA
*
104651354 CATTTTTTAATTAACTAAAGTGTATAAAA-TAGTTAC
1 CATTTTTTAATTAACTAAAATGTA-AAAAGTAGTTAC
*
104651390 CATTTTTTAATTCACTAAAATGTAAAAAGTAGTT
1 CATTTTTTAATTAACTAAAATGTAAAAAGTAGTT
104651424 GCCAATGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 4 0.13
36 27 0.87
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (36 bp):
CATTTTTTAATTAACTAAAATGTAAAAAGTAGTTAC
Found at i:104652640 original size:25 final size:25
Alignment explanation
Indices: 104652612--104652667 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
104652602 CACAACAGAA
*
104652612 CAGAACAAGACAAAACCAAA-CAAAG
1 CAGAACAAAAC-AAACCAAACCAAAG
* *
104652637 CAGAACAAAACAAATCAAACCAGAG
1 CAGAACAAAACAAACCAAACCAAAG
104652662 CAGAAC
1 CAGAAC
104652668 CGAACAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.61, C:0.25, G:0.12, T:0.02
Consensus pattern (25 bp):
CAGAACAAAACAAACCAAACCAAAG
Found at i:104652644 original size:20 final size:20
Alignment explanation
Indices: 104652621--104652675 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
104652611 ACAGAACAAG
*
104652621 ACAAAACCAAACAAAGCAGA
1 ACAAAACCAAACAAACCAGA
104652641 ACAAAA-CAAATCAAACCAGA
1 ACAAAACCAAA-CAAACCAGA
* * *
104652661 GCAGAACCGAACAAA
1 ACAAAACCAAACAAA
104652676 ATAGTACAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 4 0.14
20 22 0.76
21 3 0.10
ACGTcount: A:0.62, C:0.25, G:0.11, T:0.02
Consensus pattern (20 bp):
ACAAAACCAAACAAACCAGA
Found at i:104662984 original size:13 final size:13
Alignment explanation
Indices: 104662966--104662991 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104662956 CTCAACAGGA
104662966 ACACGCCCGTGTG
1 ACACGCCCGTGTG
104662979 ACACGCCCGTGTG
1 ACACGCCCGTGTG
104662992 CGATATCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:104666404 original size:13 final size:14
Alignment explanation
Indices: 104666378--104666406 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
104666368 ACTAACGATG
104666378 AATTAAACCATTAT
1 AATTAAACCATTAT
104666392 AATTAAA-CATTAT
1 AATTAAACCATTAT
104666405 AA
1 AA
104666407 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:104669344 original size:244 final size:244
Alignment explanation
Indices: 104668915--104669402 Score: 967
Period size: 244 Copynumber: 2.0 Consensus size: 244
104668905 ACGACAATAA
104668915 GACGTCATTTGCATAGGAACCTAAACACGATATACAACATTATCAAAAGTTATAATTAAAGGTAT
1 GACGTCATTTGCATAGGAACCTAAACACGATATACAACATTATCAAAAGTTATAATTAAAGGTAT
104668980 AGAGGTGAATGAATGAATACGTTACAAATAAATTAGCACCTTTCTATAGGATACATCCATCGATA
66 AGAGGTGAATGAATGAATACGTTACAAATAAATTAGCACCTTTCTATAGGATACATCCATCGATA
104669045 GAAAATTGGTCCACCAAGTATTGCTTCACAAGGGAGATGGATTAGCAAGTGCACCATAATAGTGA
131 GAAAATTGGTCCACCAAGTATTGCTTCACAAGGGAGATGGATTAGCAAGTGCACCATAATAGTGA
*
104669110 AGAAGGAAGGTGGAAAGATCTTCTTCAAATTGCAAAAAGTCAAAGCGGC
196 AGAAGGAAGGTGGAAAGATCTTCTCCAAATTGCAAAAAGTCAAAGCGGC
104669159 GACGTCATTTGCATAGGAACCTAAACACGATATACAACATTATCAAAAGTTATAATTAAAGGTAT
1 GACGTCATTTGCATAGGAACCTAAACACGATATACAACATTATCAAAAGTTATAATTAAAGGTAT
104669224 AGAGGTGAATGAATGAATACGTTACAAATAAATTAGCACCTTTCTATAGGATACATCCATCGATA
66 AGAGGTGAATGAATGAATACGTTACAAATAAATTAGCACCTTTCTATAGGATACATCCATCGATA
104669289 GAAAATTGGTCCACCAAGTATTGCTTCACAAGGGAGATGGATTAGCAAGTGCACCATAATAGTGA
131 GAAAATTGGTCCACCAAGTATTGCTTCACAAGGGAGATGGATTAGCAAGTGCACCATAATAGTGA
104669354 AGAAGGAAGGTGGAAAGATCTTCTCCAAATTGCAAAAAGTCAAAGCGGC
196 AGAAGGAAGGTGGAAAGATCTTCTCCAAATTGCAAAAAGTCAAAGCGGC
104669403 TCAATCTTGT
Statistics
Matches: 243, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
244 243 1.00
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (244 bp):
GACGTCATTTGCATAGGAACCTAAACACGATATACAACATTATCAAAAGTTATAATTAAAGGTAT
AGAGGTGAATGAATGAATACGTTACAAATAAATTAGCACCTTTCTATAGGATACATCCATCGATA
GAAAATTGGTCCACCAAGTATTGCTTCACAAGGGAGATGGATTAGCAAGTGCACCATAATAGTGA
AGAAGGAAGGTGGAAAGATCTTCTCCAAATTGCAAAAAGTCAAAGCGGC
Found at i:104672234 original size:29 final size:30
Alignment explanation
Indices: 104672201--104672269 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
104672191 AAACCCTAAC
* *
104672201 CCCTAAACTCCTAAATCTTAAA-C-CACAAA
1 CCCTAAACTCATAAATCCTAAATCTCA-AAA
*
104672230 TCCTAAACT-ATAAATCCTAAATCTCAAAA
1 CCCTAAACTCATAAATCCTAAATCTCAAAA
104672259 CCCTAAACTCA
1 CCCTAAACTCA
104672270 AACCCTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
28 10 0.30
29 20 0.61
30 3 0.09
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (30 bp):
CCCTAAACTCATAAATCCTAAATCTCAAAA
Done.