Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 319 of 344
Found at i:104672251 original size:21 final size:20
Alignment explanation
Indices: 104672202--104672252 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 20
104672192 AACCCTAACC
104672202 CCTAAACTCCTAAATCTTAAA
1 CCTAAA-TCCTAAATCTTAAA
*
104672223 CCACAAATCCTAAA-CTATAAA
1 CC-TAAATCCTAAATCT-TAAA
104672244 TCCTAAATC
1 -CCTAAATC
104672253 TCAAAACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 2 0.08
21 18 0.72
22 5 0.20
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.25
Consensus pattern (20 bp):
CCTAAATCCTAAATCTTAAA
Found at i:104673357 original size:115 final size:116
Alignment explanation
Indices: 104673236--104673489 Score: 286
Period size: 115 Copynumber: 2.2 Consensus size: 116
104673226 GTTGAGCAAA
* * *
104673236 TTTTTTTGCGGCGTTTTT-GAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAC
1 TTTTTTTGCAGCATTTTTCG-AAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAA
* * *
104673300 G-TCGCTAA-AGCCACTAAAGCTCGACATAAAACAAAGGACGTTGTGTTTAAT
65 GCACCCTAATA-CCACTAAAGCTCAACATAAAACAAAGGACGTTGTGTTTAAT
* * * **
104673351 TTTTTTTGCAGCATTTTTCGAAAAGCGCCGCTAATGGTCAATTTATAGCGGCGTTTTTCAAAAAG
1 TTTTTTTGCAGCATTTTTCGAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAG
* * * * *
104673416 CACCCTAATACCACTAAAGCTCAACATAAAAC-GACGTCATTGTGCTTAAT
66 CACCCTAATACCACTAAAGCTCAACATAAAACAAAGGACGTTGTGTTTAAT
* *
104673466 TTTTTTCG-A-CATTTTTCAAAAAGC
1 TTTTTTTGCAGCATTTTTCGAAAAGC
104673490 ACGTCGACCT
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
113 14 0.12
114 1 0.01
115 75 0.64
116 27 0.23
117 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (116 bp):
TTTTTTTGCAGCATTTTTCGAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAG
CACCCTAATACCACTAAAGCTCAACATAAAACAAAGGACGTTGTGTTTAAT
Found at i:104674813 original size:26 final size:26
Alignment explanation
Indices: 104674784--104674891 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
104674774 TGATACAAAT
104674784 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
104674810 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
104674836 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
104674862 TGATAATGGTTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
104674888 TGAT
1 TGAT
104674892 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:104681866 original size:26 final size:26
Alignment explanation
Indices: 104681829--104681934 Score: 167
Period size: 26 Copynumber: 4.1 Consensus size: 26
104681819 GTAAAAATTT
104681829 ATAATGGGTTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
*
104681855 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
*
104681881 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
* * *
104681907 ATAATGGTTTAGATAAATGTTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
104681933 AT
1 AT
104681935 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.36
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATATTCCATG
Found at i:104685659 original size:14 final size:15
Alignment explanation
Indices: 104685640--104685668 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
104685630 AAATCTTATT
104685640 TGAATATATG-CATG
1 TGAATATATGTCATG
104685654 TGAATATATGTCATG
1 TGAATATATGTCATG
104685669 AACTTGGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (15 bp):
TGAATATATGTCATG
Found at i:104687040 original size:13 final size:13
Alignment explanation
Indices: 104687022--104687053 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
104687012 TTATTATTTG
104687022 ACCTATGAATTGA
1 ACCTATGAATTGA
104687035 ACCTATGAATTGA
1 ACCTATGAATTGA
*
104687048 GCCTAT
1 ACCTAT
104687054 AAATAGGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (13 bp):
ACCTATGAATTGA
Found at i:104688269 original size:60 final size:59
Alignment explanation
Indices: 104688142--104688285 Score: 157
Period size: 60 Copynumber: 2.4 Consensus size: 59
104688132 TTTAGTGTTA
* *
104688142 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTAT
* * *
104688203 ACTGGGCCTAGCCCATGTCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TAT
* * *
104688263 ATTGGGCCTTGCCCATATTAATA
1 ACTGGGCCTAGCCCATATCAATA
104688286 CAGTTGGACC
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
59 3 0.04
60 52 0.74
61 12 0.17
62 3 0.04
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACAGAGTAT
Found at i:104692050 original size:40 final size:40
Alignment explanation
Indices: 104691987--104692070 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
104691977 AAAATAGAAT
* * * * *
104691987 AGATCGAGTATTAGAGGCGTTTTTATGAAAGCGCCACTAA
1 AGATCGAGCATTAGAGACATTTTTAAGAAAGCACCACTAA
* * *
104692027 AGATCGAGCATTAGCGACATTTTTAAGGAAGCACCGCTAA
1 AGATCGAGCATTAGAGACATTTTTAAGAAAGCACCACTAA
104692067 AGAT
1 AGAT
104692071 TGACCTATAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25
Consensus pattern (40 bp):
AGATCGAGCATTAGAGACATTTTTAAGAAAGCACCACTAA
Found at i:104692956 original size:14 final size:14
Alignment explanation
Indices: 104692937--104693024 Score: 52
Period size: 14 Copynumber: 6.3 Consensus size: 14
104692927 AATAACCCTT
*
104692937 TAAATCTTAAACCC
1 TAAATCTTAAACCA
* *
104692951 TAAATC-TATAATCG
1 TAAATCTTA-AACCA
* **
104692965 TAAATCATAAATTA
1 TAAATCTTAAACCA
* *
104692979 TAAACCTTAAACCC
1 TAAATCTTAAACCA
* *
104692993 TAAATATTAAACCT
1 TAAATCTTAAACCA
* *
104693007 TGAATCCTAAACCA
1 TAAATCTTAAACCA
104693021 TAAA
1 TAAA
104693025 ACCCTAAACT
Statistics
Matches: 55, Mismatches: 17, Indels: 4
0.72 0.22 0.05
Matches are distributed among these distances:
13 2 0.04
14 51 0.93
15 2 0.04
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (14 bp):
TAAATCTTAAACCA
Found at i:104692968 original size:21 final size:21
Alignment explanation
Indices: 104692937--104692997 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
104692927 AATAACCCTT
104692937 TAAATCTTAAACCCTAAATCTA
1 TAAATCTTAAACCCTAAAT-TA
* * *
104692959 T-AATCGTAAATCATAAATTA
1 TAAATCTTAAACCCTAAATTA
*
104692979 TAAACCTTAAACCCTAAAT
1 TAAATCTTAAACCCTAAAT
104692998 ATTAAACCTT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
20 3 0.10
21 27 0.87
22 1 0.03
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.31
Consensus pattern (21 bp):
TAAATCTTAAACCCTAAATTA
Found at i:104693003 original size:21 final size:21
Alignment explanation
Indices: 104692936--104693068 Score: 63
Period size: 21 Copynumber: 6.0 Consensus size: 21
104692926 CAATAACCCT
*
104692936 TTAAATCTTAAACCCTAAAT-
1 TTAAACCTTAAACCCTAAATA
* * * * *
104692956 CTATAATCGTAAATCATAAAT-
1 TTA-AACCTTAAACCCTAAATA
104692977 TATAAACCTTAAACCCTAAATA
1 T-TAAACCTTAAACCCTAAATA
* * *
104692999 TTAAACCTTGAATCCTAAACCA
1 TTAAACCTTAAACCCTAAA-TA
* * **
104693021 TAAAACCCTAAACTATAAATA
1 TTAAACCTTAAACCCTAAATA
104693042 GTACTAAACCCTTAAACCCTTAAATA
1 -T--TAAA-CCTTAAACCC-TAAATA
104693068 T
1 T
104693069 AGATTCCTAA
Statistics
Matches: 81, Mismatches: 23, Indels: 13
0.69 0.20 0.11
Matches are distributed among these distances:
20 2 0.02
21 44 0.54
22 18 0.22
24 3 0.04
25 8 0.10
26 6 0.07
ACGTcount: A:0.47, C:0.22, G:0.02, T:0.29
Consensus pattern (21 bp):
TTAAACCTTAAACCCTAAATA
Found at i:104693160 original size:21 final size:21
Alignment explanation
Indices: 104693125--104693182 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
104693115 ATTATAAAAC
*
104693125 ATCTTAAAACTATAAACCCTAA
1 ATCTT-AAACCATAAACCCTAA
104693147 ATCTTAAACCATAAACCCTAA
1 ATCTTAAACCATAAACCCTAA
**
104693168 ATCCAAAACCATAAA
1 ATCTTAAACCATAAA
104693183 ACCTTAAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 28 0.85
22 5 0.15
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (21 bp):
ATCTTAAACCATAAACCCTAA
Found at i:104693545 original size:3 final size:3
Alignment explanation
Indices: 104693537--104693568 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
104693527 ATTAATAGTA
104693537 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
104693569 AGAGAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:104693946 original size:188 final size:187
Alignment explanation
Indices: 104693668--104694026 Score: 483
Period size: 188 Copynumber: 1.9 Consensus size: 187
104693658 TTGAAGCTTT
* *
104693668 GTTATTAGTGGCGTTTCTAAAAAACGCCACAAAACATCTATTAAGAGAATGTAAAACGGCATCGT
1 GTTATTAGTGGCGCTTCTAAAAAACGCCACAAAACATCTA-TAAGAGAATCTAAAACGGCATCGT
* * * ** *
104693733 TTACATCCTTCTTATTAGTGGCGCTTCTATAAACGCCGCAAAAGGTGTGATTTACCGGCGTTTTC
65 TTACAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATACAGGCGTTTTC
* * *
104693798 ACTAGAAAACGCCACAAACATCTATTAGTAGATTGCA-AAACGACGTTGTTATTACCAA
130 ACTAG-AAACACCACAAAAATCTATTAATAGATTGCAGAAACGACGTTGTTATTACCAA
* *
104693856 GTTATTAGTGGCGCTTCTTGGAAAAACGCCACAAAACATCTA-AAGAG-ATCTCAAAACGTCATC
1 GTTATTAGTGGCGCTTC-T-AAAAAACGCCACAAAACATCTATAAGAGAATCT-AAAACGGCATC
* * *
104693919 ATTTTATAGCCTT-TTATTAGTGGCGCTTTTATAAACGCCACAAAAGATGTGAAATACAGGCGTT
63 -GTTTACAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATACAGGCGTT
*
104693983 TTCGCTAGAAACACCACAAAAATCTATTAATAGATTGCAGAAAC
127 TTCACTAGAAACACCACAAAAATCTATTAATAGATTGCAGAAAC
104694027 TGCGTCATTT
Statistics
Matches: 149, Mismatches: 17, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
187 31 0.21
188 87 0.58
189 10 0.07
190 21 0.14
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (187 bp):
GTTATTAGTGGCGCTTCTAAAAAACGCCACAAAACATCTATAAGAGAATCTAAAACGGCATCGTT
TACAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATACAGGCGTTTTCA
CTAGAAACACCACAAAAATCTATTAATAGATTGCAGAAACGACGTTGTTATTACCAA
Found at i:104696798 original size:2 final size:2
Alignment explanation
Indices: 104696791--104696826 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
104696781 CTGAAAGACA
* *
104696791 AT AT AT AT AA AT AT AT AT AT TT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104696827 TACCTTTCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:104697687 original size:19 final size:19
Alignment explanation
Indices: 104697663--104697739 Score: 68
Period size: 22 Copynumber: 3.8 Consensus size: 19
104697653 CAATCTTATT
104697663 TTAATTAATATAATTTGGA
1 TTAATTAATATAATTTGGA
104697682 TTAATTAATAATATAATTTGGA
1 TTAA-T--TAATATAATTTGGA
* *
104697704 TTAATTTATTTAAATATT--A
1 TTAATTAATAT-AAT-TTGGA
104697723 TTAAATTAATATAATTT
1 TT-AATTAATATAATTT
104697740 TTATAAATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
18 2 0.04
19 14 0.29
20 11 0.23
21 3 0.06
22 18 0.38
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TTAATTAATATAATTTGGA
Found at i:104697696 original size:22 final size:23
Alignment explanation
Indices: 104697663--104697709 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
104697653 CAATCTTATT
104697663 TTAATTAATATAATTTGGATTAA
1 TTAATTAATATAATTTGGATTAA
104697686 TTAA-TAATATAATTTGGATTAA
1 TTAATTAATATAATTTGGATTAA
104697708 TT
1 TT
104697710 TATTTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (23 bp):
TTAATTAATATAATTTGGATTAA
Found at i:104697739 original size:29 final size:29
Alignment explanation
Indices: 104697705--104697771 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
104697695 TAATTTGGAT
*
104697705 TAATTTATT-TAAATATTATTAAATTAATA
1 TAATTT-TTATAAATATTATTAAATTAAAA
*
104697734 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTAAATTAAAA
104697763 TAAATTTTT
1 T-AATTTTT
104697772 TTCCATGTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 2 0.06
29 25 0.74
30 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTAAATTAAAA
Found at i:104698058 original size:9 final size:9
Alignment explanation
Indices: 104698041--104698333 Score: 329
Period size: 9 Copynumber: 33.7 Consensus size: 9
104698031 TATATACTTG
104698041 AACTTACAT
1 AACTTACAT
*
104698050 AACTCACAT
1 AACTTACAT
104698059 AACTTACAT
1 AACTTACAT
104698068 AACTTACAT
1 AACTTACAT
*
104698077 AACTCACAT
1 AACTTACAT
*
104698086 AACTCACAT
1 AACTTACAT
*
104698095 AACTCACAT
1 AACTTACAT
104698104 AACTTACAT
1 AACTTACAT
*
104698113 AACTTATAT
1 AACTTACAT
104698122 AACTTACAT
1 AACTTACAT
104698131 AACTTACAT
1 AACTTACAT
*
104698140 AACTCACAT
1 AACTTACAT
104698149 AAC-T---T
1 AACTTACAT
104698154 -ACTTACAT
1 AACTTACAT
*
104698162 AACTCACAT
1 AACTTACAT
104698171 AACTTACAT
1 AACTTACAT
104698180 AACTTACAT
1 AACTTACAT
104698189 AACTTACAT
1 AACTTACAT
* *
104698198 AACTTATAC
1 AACTTACAT
*
104698207 AACTTATAT
1 AACTTACAT
104698216 AACTTACAT
1 AACTTACAT
*
104698225 AACTCACAT
1 AACTTACAT
*
104698234 AACTCACAT
1 AACTTACAT
104698243 AACTTACAT
1 AACTTACAT
104698252 AACTT--AT
1 AACTTACAT
*
104698259 -ATTTACAT
1 AACTTACAT
104698267 AACTTACAT
1 AACTTACAT
*
104698276 AATTTACAT
1 AACTTACAT
104698285 AACTTACAT
1 AACTTACAT
*
104698294 TA--TACAT
1 AACTTACAT
* *
104698301 AA-ATATAT
1 AACTTACAT
* *
104698309 ATCATATCAT
1 AACTTA-CAT
104698319 AACTTACAT
1 AACTTACAT
104698328 AACTTA
1 AACTTA
104698334 ATTAGAGTTA
Statistics
Matches: 246, Mismatches: 27, Indels: 22
0.83 0.09 0.07
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 3 0.01
7 8 0.03
8 8 0.03
9 217 0.88
10 6 0.02
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Found at i:104708462 original size:3 final size:3
Alignment explanation
Indices: 104708454--104708509 Score: 85
Period size: 3 Copynumber: 18.7 Consensus size: 3
104708444 TAAATGAGAA
* *
104708454 AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAC AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
104708502 AAC AAT AA
1 AAT AAT AA
104708510 CGAGAAAGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:104708589 original size:3 final size:3
Alignment explanation
Indices: 104708576--104708618 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
104708566 ATCATAGTAT
* * * *
104708576 ATA AAA ATA ATA ATA ATA ATA ATA GTA GTA ATA ATA TTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
104708619 AAAAAGTGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:104709555 original size:177 final size:177
Alignment explanation
Indices: 104709250--104710029 Score: 1229
Period size: 177 Copynumber: 4.4 Consensus size: 177
104709240 CGGGCTCTCT
* * * ** *
104709250 TACATAGAGATAAGACTCGCCATCTTTGATCTACTCCATTACTGCTTAGGGAGATAAGATCTGTA
1 TACATGGAAATAAGACTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATA
* * *
104709315 ATTTTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTTGTATCTTCAACATACTCTCTTGC
66 ATTTTCAGTCCGCTTCCTTGCTACCTCAAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGC
104709380 TACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATACCCGA
131 TACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATACCCGA
* *
104709427 TACATGAAAATAAGACTCGCCATCTTTGATCTGCTCCGCTACTGCTCAGGGAGATAAGATCTATA
1 TACATGGAAATAAGACTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATA
*
104709492 ATTTTCAGTCCGCTTCTTTGCTACCTCAAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGC
66 ATTTTCAGTCCGCTTCCTTGCTACCTCAAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGC
104709557 TACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATACCCGA
131 TACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATACCCGA
*
104709604 TACATGGAAATAAGACTCGCCATCTTTGATCTGCTCCGCTACTGCTCAGGGAGATAAGATCTATA
1 TACATGGAAATAAGACTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATA
*
104709669 ATTTTCAGTCCGCTTCTTTGCTACCTCAAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGC
66 ATTTTCAGTCCGCTTCCTTGCTACCTCAAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGC
* * *
104709734 TACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTTCATAGCTGA
131 TACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATACCCGA
* * * *
104709781 TACATGGAGATAAGACTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGAGAGATGAGATCTGTA
1 TACATGGAAATAAGACTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATA
* ** *
104709846 ATTTTCAATTAGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGC
66 ATTTTCAGTCCGCTTCCTTGCTACCTCAAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGC
* * * * *
104709911 TACATCAGAGAGATAAGGTTGGCGGCTAAAATTTGCTTCATAGCCGA
131 TACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATACCCGA
* * * * *
104709958 TACATGGAGATAAGACTTGCCAT-TTTCTATCTGCTCCACTACTGCTTAGGGAGATAAGATATAT
1 TACATGGAAATAAGACTCGCCATCTTT-GATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTAT
104710022 AATTTTCA
65 AATTTTCA
104710030 CCGATGTTGC
Statistics
Matches: 565, Mismatches: 37, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
176 3 0.01
177 562 0.99
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (177 bp):
TACATGGAAATAAGACTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATA
ATTTTCAGTCCGCTTCCTTGCTACCTCAAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGC
TACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATACCCGA
Found at i:104709748 original size:44 final size:44
Alignment explanation
Indices: 104709686--104709927 Score: 112
Period size: 44 Copynumber: 5.5 Consensus size: 44
104709676 GTCCGCTTCT
*
104709686 TTGCTACCTCA-AGAAGATAAGACTTGTATCTTCAACCTGCTCTC
1 TTGCTACATCAGAG-AGATAAGACTTGTATCTTCAACCTGCTCTC
* * ** ** *
104709730 TTGCTACATCAGAGAGATAAGGCTGGTGGCTAAAATCTGCT-TC
1 TTGCTACATCAGAGAGATAAGACTTGTATCTTCAACCTGCTCTC
* * * * ** *
104709773 ATAGCT-GATACATG-GAGATAAGACTCGCCATCTTTGATCTGCTC-C
1 -TTGCTACAT-CA-GAGAGATAAGACTTG-TATCTTCAACCTGCTCTC
* * *
104709818 --GCTAC-TGCTTAGAGAGATGAGA-TCTGTAATTTTCAA-TTAGCT-TCC
1 TTGCTACAT-C--AGAGAGATAAGACT-TGT-ATCTTCAACCT-GCTCT-C
*
104709863 TTGCTACCTCAG-GAAGATAAGACTTGTATCTTCAACCTGCTCTC
1 TTGCTACATCAGAG-AGATAAGACTTGTATCTTCAACCTGCTCTC
104709907 TTGCTACATCAGAGAGATAAG
1 TTGCTACATCAGAGAGATAAG
104709928 GTTGGCGGCT
Statistics
Matches: 144, Mismatches: 31, Indels: 46
0.65 0.14 0.21
Matches are distributed among these distances:
42 5 0.03
43 7 0.05
44 95 0.66
45 29 0.20
46 1 0.01
47 6 0.04
48 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
TTGCTACATCAGAGAGATAAGACTTGTATCTTCAACCTGCTCTC
Found at i:104713572 original size:79 final size:78
Alignment explanation
Indices: 104713470--104713692 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
104713460 GCTCCTCGTT
* *
104713470 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
104713535 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
104713550 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
104713613 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
104713628 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
104713691 GA
63 GA
104713693 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:104713587 original size:39 final size:40
Alignment explanation
Indices: 104713470--104713692 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
104713460 GCTCCTCGTT
* *
104713470 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
104713510 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
104713550 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
104713589 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
104713628 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
104713669 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
104713693 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:104718895 original size:25 final size:25
Alignment explanation
Indices: 104718866--104718913 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
104718856 TTATAATATG
* *
104718866 AAAATGACCATTTTTCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
104718891 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
104718914 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:104718964 original size:9 final size:9
Alignment explanation
Indices: 104718952--104719008 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
104718942 TTTGATAAAC
104718952 ATGATATGT
1 ATGATATGT
*
104718961 ATGATATGCAC
1 ATGATATG--T
*
104718972 ATGACATGT
1 ATGATATGT
*
104718981 ATGATATGCAC
1 ATGATATG--T
104718992 ATGATATGT
1 ATGATATGT
104719001 ATGATATG
1 ATGATATG
104719009 CACACGACAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:104718975 original size:20 final size:20
Alignment explanation
Indices: 104718950--104719012 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
104718940 ATTTTGATAA
104718950 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
104718970 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
104718990 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
104719010 ACA
1 ACA
104719013 CGACATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:104719020 original size:20 final size:20
Alignment explanation
Indices: 104718950--104719020 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
104718940 ATTTTGATAA
*
104718950 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
104718970 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
104718990 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
*
104719010 ACACGACATGT
1 ACATGACATGT
104719021 TCATAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:104719093 original size:24 final size:24
Alignment explanation
Indices: 104719066--104719207 Score: 227
Period size: 24 Copynumber: 6.0 Consensus size: 24
104719056 GAGGAAGTGC
104719066 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
104719090 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
104719114 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
104719137 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
104719161 -AAAGGGCTTATGCCCCAGCTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
104719184 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
104719208 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
23 45 0.41
24 56 0.50
25 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:104719121 original size:23 final size:23
Alignment explanation
Indices: 104719067--104719186 Score: 213
Period size: 23 Copynumber: 5.1 Consensus size: 23
104719057 AGGAAGTGCA
104719067 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
104719090 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
104719114 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
104719137 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
104719161 AAAGGGCTTATGCCCCAGCTATT
1 AAAGGGCTTATGCCCCAGTTATT
104719184 AAA
1 AAA
104719187 AGAGGCTAGG
Statistics
Matches: 94, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
23 48 0.51
24 46 0.49
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:104719136 original size:47 final size:47
Alignment explanation
Indices: 104719067--104719207 Score: 239
Period size: 47 Copynumber: 3.0 Consensus size: 47
104719057 AGGAAGTGCA
104719067 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
104719114 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* *
104719161 AAAGGGCTTATGCCCCAGCTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
104719208 ATGATAAAGC
Statistics
Matches: 90, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 79 0.88
48 11 0.12
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:104719438 original size:31 final size:31
Alignment explanation
Indices: 104719400--104719463 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
104719390 CGTTTACAGT
*
104719400 AAAGGCTTCGGCTCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
104719431 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
104719462 AA
1 AA
104719464 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:104723594 original size:21 final size:21
Alignment explanation
Indices: 104723568--104723620 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
104723558 GACCCATAAA
*
104723568 GTGCCTAAAATGACACACGAG
1 GTGCCTGAAATGACACACGAG
* *
104723589 GTGCCTGATACGACACACGAG
1 GTGCCTGAAATGACACACGAG
104723610 GTGCCTGAAAT
1 GTGCCTGAAAT
104723621 ACGACACATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.26, T:0.17
Consensus pattern (21 bp):
GTGCCTGAAATGACACACGAG
Found at i:104723622 original size:23 final size:21
Alignment explanation
Indices: 104723579--104723628 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
104723569 TGCCTAAAAT
104723579 GACACACGAGGTGCCTGATAC
1 GACACACGAGGTGCCTGATAC
104723600 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG--ATAC
104723623 GACACA
1 GACACA
104723629 TAAAGTGCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 17 0.63
23 10 0.37
ACGTcount: A:0.34, C:0.28, G:0.26, T:0.12
Consensus pattern (21 bp):
GACACACGAGGTGCCTGATAC
Found at i:104723636 original size:23 final size:23
Alignment explanation
Indices: 104723554--104723640 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 23
104723544 CCTGATCAGT
* *
104723554 ATACGACCCATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* * *
104723576 A-ATGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
104723596 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
104723619 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
104723641 TCAGTAAAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
20 1 0.02
21 31 0.60
22 1 0.02
23 19 0.37
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:104725114 original size:16 final size:17
Alignment explanation
Indices: 104725079--104725114 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
104725069 CCTAATTCTC
104725079 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
104725095 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
104725110 CCTTC
1 CCTTC
104725115 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:104730806 original size:21 final size:22
Alignment explanation
Indices: 104730763--104730809 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
104730753 TTATCAAAAG
* *
104730763 TTTAGGAAATCTTTTAGAAATT
1 TTTAAGAAATCTTTCAGAAATT
104730785 TTTAAGAAATCTTTCA-AAATT
1 TTTAAGAAATCTTTCAGAAATT
104730806 TTTA
1 TTTA
104730810 GTCTCTAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (22 bp):
TTTAAGAAATCTTTCAGAAATT
Found at i:104734656 original size:16 final size:17
Alignment explanation
Indices: 104734619--104734653 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
104734609 AATATTTTGC
104734619 AATTTCATAATTTTTAT
1 AATTTCATAATTTTTAT
104734636 AATTTC-TAATTTTATAT
1 AATTTCATAATTTT-TAT
104734653 A
1 A
104734654 TTTTTTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTCATAATTTTTAT
Found at i:104739292 original size:52 final size:52
Alignment explanation
Indices: 104739230--104739611 Score: 512
Period size: 52 Copynumber: 7.7 Consensus size: 52
104739220 CGGATTTGAG
* *
104739230 TACTTATCTGATCAAGTGGCAAGTGGAAAGTGATAAGTAATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
104739282 TACTTATCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* *
104739328 CACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* **
104739380 TACTTATCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* *
104739426 CACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
104739478 TACTTATCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* *
104739524 CACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* *
104739576 TACTTATCTGATCAAGAGACAAAGTGGTAAGTGATA
1 TACTTATCTGATCAAGTGAC-AAGTGGAAAGTGATA
104739612 GCTTTAGCTA
Statistics
Matches: 290, Mismatches: 21, Indels: 37
0.83 0.06 0.11
Matches are distributed among these distances:
46 129 0.44
52 148 0.51
53 13 0.04
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (52 bp):
TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
Found at i:104739319 original size:46 final size:46
Alignment explanation
Indices: 104739256--104739735 Score: 555
Period size: 46 Copynumber: 10.2 Consensus size: 46
104739246 TGGCAAGTGG
* *
104739256 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
104739302 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
104739348 AAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* **
104739400 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
104739446 AAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
104739498 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
104739544 AAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* ** *
104739596 AAAGTGGTAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
104739642 AAAGTG---A-T-A-AG--T-GGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
** *
104739679 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
104739725 AAAGTGATAAG
1 AAAGTGATAAG
104739736 CGGTTACACT
Statistics
Matches: 381, Mismatches: 26, Indels: 54
0.83 0.06 0.12
Matches are distributed among these distances:
37 29 0.08
38 1 0.00
40 3 0.01
41 2 0.01
42 2 0.01
43 3 0.01
45 1 0.00
46 211 0.55
52 129 0.34
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
Found at i:104739361 original size:98 final size:98
Alignment explanation
Indices: 104739231--104739643 Score: 727
Period size: 98 Copynumber: 4.2 Consensus size: 98
104739221 GGATTTGAGT
*
104739231 ACTTATCTGATCAAGTGGCAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
*
104739296 AGTGACAAAGTGATAAGTGATAGCTTCGGCTAC
66 AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
104739329 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
* *
104739394 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTAC
66 AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
104739427 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
*
104739492 AGTGACAAAGTGATAAGTGATAGCTTCGGCTAC
66 AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
* *
104739525 ACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
* * *
104739590 AGAGACAAAGTGGTAAGTGATAGCTTTAGCTAC
66 AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
*
104739623 ACTTATCTGATCAAGAGACAA
1 ACTTATCTGATCAAGTGACAA
104739644 AGTGATAAGT
Statistics
Matches: 301, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 301 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (98 bp):
ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
Found at i:104739569 original size:196 final size:196
Alignment explanation
Indices: 104739231--104739731 Score: 789
Period size: 196 Copynumber: 2.6 Consensus size: 196
104739221 GGATTTGAGT
*
104739231 ACTTATCTGATCAAGTGGCAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
*
104739296 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGA
66 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGA
* *
104739361 TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTA
131 TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTA
104739426 C
196 C
104739427 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
104739492 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGA
66 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGA
* *
104739557 TAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGGTAAGTGATAGCTTTAGCTA
131 TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTA
104739622 C
196 C
*
104739623 ACTTATCTGATCAAGAGAC------AAAGTG---A-T-A-AG--T-GGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
* ** *
104739673 AGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGA
66 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-AAGTGA
104739732 TAAGCGGTTA
Statistics
Matches: 293, Mismatches: 11, Indels: 16
0.92 0.03 0.05
Matches are distributed among these distances:
181 67 0.23
182 7 0.02
184 2 0.01
185 1 0.00
186 1 0.00
187 1 0.00
190 6 0.02
196 208 0.71
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (196 bp):
ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGA
TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTA
C
Found at i:104739667 original size:37 final size:37
Alignment explanation
Indices: 104739618--104739846 Score: 300
Period size: 37 Copynumber: 6.0 Consensus size: 37
104739608 GATAGCTTTA
104739618 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
104739655 GCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAA--G-T-G
*
104739696 CTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGCG
1 -----GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
104739738 GTTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
104739775 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
104739812 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
104739847 ATCATACGTA
Statistics
Matches: 172, Mismatches: 11, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 119 0.69
39 1 0.01
40 1 0.01
41 1 0.01
42 1 0.01
44 1 0.01
46 33 0.19
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:104739710 original size:83 final size:83
Alignment explanation
Indices: 104739571--104739848 Score: 398
Period size: 83 Copynumber: 3.5 Consensus size: 83
104739561 TGATAGCTTC
* *
104739571 GGCTATACTTATCTGATCAAGAGACAAAGTGGTAAGTGATAGCTTTAGCTACACTTATCTGATCA
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
104739636 AGAGACAAAGTGATAAGT
66 AGAGACAAAGTGATAAGT
*
104739654 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
*
104739719 AGAGACAAAGTGATAAGC
66 AGAGACAAAGTGATAAGT
* *
104739737 GGTTACACTTATCTGATCAAGAAACAAAGTGATAA--G-T-G-----GCTACACTTATCTGATCA
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
* *
104739793 AGAAACAAAGTGATAGGT
66 AGAGACAAAGTGATAAGT
*
104739811 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTGAT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGAT
104739849 CATACGTAAG
Statistics
Matches: 181, Mismatches: 11, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
72 9 0.05
73 4 0.02
74 51 0.28
75 1 0.01
79 1 0.01
80 1 0.01
81 1 0.01
83 113 0.62
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (83 bp):
GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
AGAGACAAAGTGATAAGT
Found at i:104741123 original size:4 final size:4
Alignment explanation
Indices: 104741114--104741147 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
104741104 AAGTTTTATT
104741114 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
104741148 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:104741155 original size:22 final size:22
Alignment explanation
Indices: 104741097--104741156 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
104741087 AAGTGGCCCA
*
104741097 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
104741121 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
104741142 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
104741157 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:104744949 original size:4 final size:4
Alignment explanation
Indices: 104744940--104744972 Score: 57
Period size: 4 Copynumber: 8.0 Consensus size: 4
104744930 AAGTTTTATT
104744940 TTTA TTTA TTTA TTTA TTTA TTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA
104744973 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:104745997 original size:58 final size:56
Alignment explanation
Indices: 104745919--104746138 Score: 288
Period size: 49 Copynumber: 4.1 Consensus size: 56
104745909 ACATGTGAAC
104745919 ATGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGAT
1 ATGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGAT
104745976 ATGTGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATC-G---GT-A-
1 A--TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGAT
104746028 A-GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGAT
1 ATGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGAT
* *
104746083 ATGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGAT
1 ATGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGAT
*
104746132 TTGTGAT
1 ATGTGAT
104746139 TACGTGTAAG
Statistics
Matches: 149, Mismatches: 3, Indels: 28
0.83 0.02 0.16
Matches are distributed among these distances:
49 86 0.58
50 3 0.02
52 2 0.01
53 3 0.02
54 4 0.03
55 1 0.01
56 3 0.02
57 2 0.01
58 40 0.27
59 5 0.03
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (56 bp):
ATGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGAT
Found at i:104746029 original size:28 final size:28
Alignment explanation
Indices: 104745939--104746029 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
104745929 GTGATTCCGT
104745939 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
104745967 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
104745996 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
104746025 GTAAG
1 GTAAG
104746030 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:104746052 original size:49 final size:49
Alignment explanation
Indices: 104745980--104746171 Score: 321
Period size: 49 Copynumber: 3.9 Consensus size: 49
104745970 AGTGATATGT
104745980 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
104746029 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
104746078 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
104746127 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
104746172 AGAAAACGAA
Statistics
Matches: 137, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 137 1.00
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:104749354 original size:52 final size:52
Alignment explanation
Indices: 104749292--104749673 Score: 512
Period size: 52 Copynumber: 7.7 Consensus size: 52
104749282 CGGATTTGAG
* *
104749292 TACTTATCTGATCAAGTGGCAAGTGGAAAGTGATAAGTAATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
104749344 TACTTATCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* *
104749390 CACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* **
104749442 TACTTATCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* *
104749488 CACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
104749540 TACTTATCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* *
104749586 CACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTA
1 TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
* *
104749638 TACTTATCTGATCAAGAGACAAAGTGGTAAGTGATA
1 TACTTATCTGATCAAGTGAC-AAGTGGAAAGTGATA
104749674 GCTTTAGCTA
Statistics
Matches: 290, Mismatches: 21, Indels: 37
0.83 0.06 0.11
Matches are distributed among these distances:
46 129 0.44
52 148 0.51
53 13 0.04
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (52 bp):
TACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTA
Found at i:104749381 original size:46 final size:46
Alignment explanation
Indices: 104749318--104749797 Score: 555
Period size: 46 Copynumber: 10.2 Consensus size: 46
104749308 TGGCAAGTGG
* *
104749318 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
104749364 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
104749410 AAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* **
104749462 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
104749508 AAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
104749560 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
104749606 AAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* ** *
104749658 AAAGTGGTAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
104749704 AAAGTG---A-T-A-AG--T-GGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
** *
104749741 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
104749787 AAAGTGATAAG
1 AAAGTGATAAG
104749798 CGGTTACACT
Statistics
Matches: 381, Mismatches: 26, Indels: 54
0.83 0.06 0.12
Matches are distributed among these distances:
37 29 0.08
38 1 0.00
40 3 0.01
41 2 0.01
42 2 0.01
43 3 0.01
45 1 0.00
46 211 0.55
52 129 0.34
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
Found at i:104749423 original size:98 final size:98
Alignment explanation
Indices: 104749293--104749705 Score: 727
Period size: 98 Copynumber: 4.2 Consensus size: 98
104749283 GGATTTGAGT
*
104749293 ACTTATCTGATCAAGTGGCAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
*
104749358 AGTGACAAAGTGATAAGTGATAGCTTCGGCTAC
66 AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
104749391 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
* *
104749456 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTAC
66 AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
104749489 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
*
104749554 AGTGACAAAGTGATAAGTGATAGCTTCGGCTAC
66 AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
* *
104749587 ACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
* * *
104749652 AGAGACAAAGTGGTAAGTGATAGCTTTAGCTAC
66 AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
*
104749685 ACTTATCTGATCAAGAGACAA
1 ACTTATCTGATCAAGTGACAA
104749706 AGTGATAAGT
Statistics
Matches: 301, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 301 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (98 bp):
ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
AGTGACAAAGTGATAAGTGATAGCTTCAGCTAC
Found at i:104749631 original size:196 final size:196
Alignment explanation
Indices: 104749293--104749793 Score: 789
Period size: 196 Copynumber: 2.6 Consensus size: 196
104749283 GGATTTGAGT
*
104749293 ACTTATCTGATCAAGTGGCAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
*
104749358 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGA
66 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGA
* *
104749423 TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTA
131 TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTA
104749488 C
196 C
104749489 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
104749554 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGA
66 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGA
* *
104749619 TAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGGTAAGTGATAGCTTTAGCTA
131 TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTA
104749684 C
196 C
*
104749685 ACTTATCTGATCAAGAGAC------AAAGTG---A-T-A-AG--T-GGCTATACTTATCTGATCA
1 ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
* ** *
104749735 AGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGA
66 AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-AAGTGA
104749794 TAAGCGGTTA
Statistics
Matches: 293, Mismatches: 11, Indels: 16
0.92 0.03 0.05
Matches are distributed among these distances:
181 67 0.23
182 7 0.02
184 2 0.01
185 1 0.00
186 1 0.00
187 1 0.00
190 6 0.02
196 208 0.71
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (196 bp):
ACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCA
AGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGA
TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTA
C
Found at i:104749729 original size:37 final size:37
Alignment explanation
Indices: 104749680--104749908 Score: 300
Period size: 37 Copynumber: 6.0 Consensus size: 37
104749670 GATAGCTTTA
104749680 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
104749717 GCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAA--G-T-G
*
104749758 CTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGCG
1 -----GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
104749800 GTTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
104749837 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
104749874 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
104749909 ATCATACGTA
Statistics
Matches: 172, Mismatches: 11, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 119 0.69
39 1 0.01
40 1 0.01
41 1 0.01
42 1 0.01
44 1 0.01
46 33 0.19
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:104749772 original size:83 final size:83
Alignment explanation
Indices: 104749633--104749910 Score: 398
Period size: 83 Copynumber: 3.5 Consensus size: 83
104749623 TGATAGCTTC
* *
104749633 GGCTATACTTATCTGATCAAGAGACAAAGTGGTAAGTGATAGCTTTAGCTACACTTATCTGATCA
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
104749698 AGAGACAAAGTGATAAGT
66 AGAGACAAAGTGATAAGT
*
104749716 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
*
104749781 AGAGACAAAGTGATAAGC
66 AGAGACAAAGTGATAAGT
* *
104749799 GGTTACACTTATCTGATCAAGAAACAAAGTGATAA--G-T-G-----GCTACACTTATCTGATCA
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
* *
104749855 AGAAACAAAGTGATAGGT
66 AGAGACAAAGTGATAAGT
*
104749873 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTGAT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGAT
104749911 CATACGTAAG
Statistics
Matches: 181, Mismatches: 11, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
72 9 0.05
73 4 0.02
74 51 0.28
75 1 0.01
79 1 0.01
80 1 0.01
81 1 0.01
83 113 0.62
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (83 bp):
GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCA
AGAGACAAAGTGATAAGT
Found at i:104753107 original size:54 final size:54
Alignment explanation
Indices: 104753048--104753156 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
104753038 CTCATACCAC
104753048 AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
1 AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
104753102 AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
1 AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
104753156 A
1 A
104753157 AAGTAATTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.50, C:0.18, G:0.04, T:0.28
Consensus pattern (54 bp):
AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
Found at i:104755428 original size:13 final size:13
Alignment explanation
Indices: 104755406--104755438 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
104755396 AAGGGTTTGT
104755406 TTAT-TAAACTAA
1 TTATCTAAACTAA
104755418 TTATCTAAACTAA
1 TTATCTAAACTAA
*
104755431 TTAACTAA
1 TTATCTAA
104755439 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:104758345 original size:5 final size:5
Alignment explanation
Indices: 104758335--104758400 Score: 50
Period size: 5 Copynumber: 13.0 Consensus size: 5
104758325 ATATGTCTTG
*
104758335 TAAAA TAAAA T--AA TAAAA TTGAAA TGAAAA TAAAAA TAAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA -TAAAA T-AAAA T-AAAA T-AAAA TAAAA
104758382 -ATAAA -AAAA TAAAA TAAAA
1 TA-AAA TAAAA TAAAA TAAAA
104758401 AATAAGAATA
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.06
4 4 0.08
5 26 0.50
6 19 0.37
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:104758365 original size:6 final size:6
Alignment explanation
Indices: 104758356--104758414 Score: 73
Period size: 6 Copynumber: 9.5 Consensus size: 6
104758346 AATAAAATTG
* *
104758356 AAATGA AAATAA AAATAA AAATAA AAATAA AAAAATA AAATAAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATA-A AAAT-AA AAATAA
*
104758406 GAATAA AAA
1 AAATAA AAA
104758415 GATAGGATGA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
6 36 0.78
7 9 0.20
8 1 0.02
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:104758371 original size:12 final size:11
Alignment explanation
Indices: 104758335--104758414 Score: 67
Period size: 12 Copynumber: 7.0 Consensus size: 11
104758325 ATATGTCTTG
104758335 TAAAATAAAATAA
1 TAAAAT-AAA-AA
**
104758348 TAAAATTGAAA
1 TAAAATAAAAA
104758359 TGAAAATAAAAA
1 T-AAAATAAAAA
104758371 TAAAAATAAAAA
1 T-AAAATAAAAA
104758383 T--AA-AAAAA
1 TAAAATAAAAA
104758391 TAAAATAAAAAA
1 TAAAAT-AAAAA
104758403 TAAGAATAAAAA
1 TAA-AATAAAAA
104758415 GATAGGATGA
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
8 6 0.11
9 2 0.04
10 2 0.04
11 3 0.05
12 34 0.61
13 9 0.16
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:104758390 original size:26 final size:26
Alignment explanation
Indices: 104758335--104758414 Score: 90
Period size: 26 Copynumber: 2.9 Consensus size: 26
104758325 ATATGTCTTG
*
104758335 TAAAATAAAATAATAAAATTGAAATGAAAA
1 TAAAATAAAA-AATAAAAAT-AAA--AAAA
104758365 TAAAA-ATAAAAATAAAAATAAAAAAA
1 TAAAATA-AAAAATAAAAATAAAAAAA
*
104758391 TAAAATAAAAAATAAGAATAAAAA
1 TAAAATAAAAAATAAAAATAAAAA
104758415 GATAGGATGA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
26 25 0.54
27 1 0.02
28 3 0.07
29 9 0.20
30 8 0.17
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19
Consensus pattern (26 bp):
TAAAATAAAAAATAAAAATAAAAAAA
Found at i:104759867 original size:13 final size:13
Alignment explanation
Indices: 104759845--104759877 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
104759835 AATGGTTTGT
104759845 TTAT-TAAACTAA
1 TTATCTAAACTAA
104759857 TTATCTAAACTAA
1 TTATCTAAACTAA
*
104759870 TTAACTAA
1 TTATCTAA
104759878 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:104770028 original size:27 final size:26
Alignment explanation
Indices: 104769998--104770065 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 26
104769988 GGATAGGTAT
104769998 ATAATATAATATGAAA-AATATATGTAC
1 ATAATATAATATGAAAGAATATA--TAC
* *
104770025 ATAAGATAATGT-AAAGAATATATAC
1 ATAATATAATATGAAAGAATATATAC
104770050 ATAACTAATAATATGA
1 ATAA-T-ATAATATGA
104770066 GAAGTACGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
25 7 0.21
26 3 0.09
27 22 0.67
28 1 0.03
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (26 bp):
ATAATATAATATGAAAGAATATATAC
Found at i:104770438 original size:3 final size:3
Alignment explanation
Indices: 104770424--104770474 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
104770414 AAACATAAAC
* *
104770424 TAA TACA TAA TAA TAT TAA TAA TAA TAA -AA TTAA TAA T-A TAA AAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
104770469 TAA TAA
1 TAA TAA
104770475 GAGTATTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 4 0.10
3 31 0.77
4 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:104770456 original size:15 final size:15
Alignment explanation
Indices: 104770424--104770474 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
104770414 AAACATAAAC
*
104770424 TAATACATAATAATAT
1 TAATA-ATAATAAAAT
104770440 TAATAATAATAAAAT
1 TAATAATAATAAAAT
*
104770455 TAATAAT-ATAAAAA
1 TAATAATAATAAAAT
104770469 TAATAA
1 TAATAA
104770475 GAGTATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.36
15 16 0.48
16 5 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATAATAATAAAAT
Found at i:104771108 original size:18 final size:20
Alignment explanation
Indices: 104771072--104771108 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
104771062 TTAATAAAAC
*
104771072 ATATGTTTTTATGTGTTTTG
1 ATATGTTTTTATGTATTTTG
104771092 ATAT-TTTTTA-GTATTTT
1 ATATGTTTTTATGTATTTT
104771109 TGTGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 6 0.38
20 4 0.25
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.68
Consensus pattern (20 bp):
ATATGTTTTTATGTATTTTG
Found at i:104772600 original size:13 final size:13
Alignment explanation
Indices: 104772573--104772606 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
104772563 GAGTTGATCC
*
104772573 TTGAACAACATAAA
1 TTGAA-AACAGAAA
104772587 TTGAAAACAGAAA
1 TTGAAAACAGAAA
104772600 TTGAAAA
1 TTGAAAA
104772607 TACCTTAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:104772679 original size:14 final size:14
Alignment explanation
Indices: 104772660--104772694 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
104772650 AGCTGATTTT
* *
104772660 TTGAAAAGTAGGAA
1 TTGAAAAGCAGAAA
104772674 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
104772688 TTGAAAA
1 TTGAAAA
104772695 TACCTTAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:104772703 original size:88 final size:87
Alignment explanation
Indices: 104772542--104772835 Score: 317
Period size: 88 Copynumber: 3.4 Consensus size: 87
104772532 ATTAAAATGT
* ** * *
104772542 TCAACCCACCTCTCGCAATATGAGTTGATCCTT-GAACAA-CATAAATTGAAAACAGAAATTGAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAGAA-AAGTAAAAATTGAAAACAGAAATTGAA
*
104772605 AATACCTTAGCATGACCTGAGGC
65 AATACCTTAGCATGACCCGAGGC
* * * **
104772628 TCAACTCACCTCTCACAATATGAGCTGATTTTTTGAAAAGTAGGAATTGAAAAGCAGAAATTGAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAGAAAAGTAAAAATTGAAAA-CAGAAATTGAA
* *
104772693 AATACCTTAGCGTGCCCCGAGGC
65 AATACCTTAGCATGACCCGAGGC
** * * * *
104772716 TTGACTCACCTCTCGCAATATGAGTTG-GTTTTAGGAAAGTAAAAATTAAAAACAGAATTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAGAAAAGTAAAAATTGAAAACAGAAATTGAAA
*
104772780 ATACC-TCGACATGTGACCCGAGGC
66 ATACCTTAG-CA--TGACCCGAGGC
* *
104772804 TCAACTCATCTCTTGCAATATGAGTTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
104772836 GAAAAACAAA
Statistics
Matches: 171, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
85 2 0.01
86 47 0.27
87 32 0.19
88 87 0.51
89 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (87 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTAGAAAAGTAAAAATTGAAAACAGAAATTGAAA
ATACCTTAGCATGACCCGAGGC
Found at i:104772924 original size:53 final size:53
Alignment explanation
Indices: 104772800--104772999 Score: 245
Period size: 56 Copynumber: 3.8 Consensus size: 53
104772790 ATGTGACCCG
* *
104772800 AGGCTCAACTCATCTCTTGCAATATGAGTTGA-TTTTGAAAAAC---A--AAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAATTAAA
*
104772847 AGG-TACAACTCACCTCTCGCAATATGAGTTG-CTTTTGAAAAACAGTAATTAAA
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-TAATTAAA
* *
104772900 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAT-AATTAAA
*
104772956 AGGCTCAACTCACGTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
104773000 TAGAATTGGA
Statistics
Matches: 133, Mismatches: 7, Indels: 19
0.84 0.04 0.12
Matches are distributed among these distances:
46 1 0.01
47 38 0.29
51 1 0.01
53 32 0.24
54 12 0.09
55 1 0.01
56 48 0.36
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (53 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAATTAAA
Found at i:104773132 original size:71 final size:71
Alignment explanation
Indices: 104773016--104773154 Score: 224
Period size: 71 Copynumber: 2.0 Consensus size: 71
104773006 TGGAAAGTAG
* *
104773016 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
104773081 AAACAT
66 AAACAT
* * **
104773087 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
1 AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
104773152 AAA
66 AAA
104773155 AGTAAAAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
AAACAT
Found at i:104795396 original size:18 final size:20
Alignment explanation
Indices: 104795360--104795396 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
104795350 TTAATAATAC
*
104795360 ATATGTTTTTATGTGTTTTG
1 ATATGTTTTTATGTATTTTG
104795380 ATAT-TTTTTA-GTATTTT
1 ATATGTTTTTATGTATTTT
104795397 TGTGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 6 0.38
20 4 0.25
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.68
Consensus pattern (20 bp):
ATATGTTTTTATGTATTTTG
Found at i:104798202 original size:37 final size:37
Alignment explanation
Indices: 104798160--104798247 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
104798150 GGACTTCTAC
* **
104798160 TGGATTATGCCATGCAAGTGAATCTAGCGGACCTCCA
1 TGGATTATGCCATGCAAGCGAATCTAGCAAACCTCCA
* * * * *
104798197 TGGATTATGCCATGTAGGCGAATCTGGCAAACCTTCT
1 TGGATTATGCCATGCAAGCGAATCTAGCAAACCTCCA
104798234 TGGATTATGCCATG
1 TGGATTATGCCATG
104798248 GCCATGGAGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (37 bp):
TGGATTATGCCATGCAAGCGAATCTAGCAAACCTCCA
Found at i:104798326 original size:22 final size:22
Alignment explanation
Indices: 104798301--104798371 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 22
104798291 CCACAAAGTC
*
104798301 TCATACTACTCTGAAAGGGTTT
1 TCATACTACTCTGAAAGGGCTT
*
104798323 TCATACTACCCAT-AAAGGGCTT
1 TCATACTACTC-TGAAAGGGCTT
*
104798345 TCATACTACT-TGTAAAGGACTT
1 TCATACTACTCTG-AAAGGGCTT
104798367 TCATA
1 TCATA
104798372 TCCATGTGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
20 1 0.02
22 40 0.95
23 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (22 bp):
TCATACTACTCTGAAAGGGCTT
Found at i:104800213 original size:40 final size:40
Alignment explanation
Indices: 104800169--104800266 Score: 169
Period size: 40 Copynumber: 2.5 Consensus size: 40
104800159 AAATGAATAA
*
104800169 ATGAAATGTTTATATGAATCAGTTATATGGAAATAGATAT
1 ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
*
104800209 ATGAAATGGTTATATGAATTAGTTATATGGAAATAGATAT
1 ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
*
104800249 ATGGAATGGTTATATGAA
1 ATGAAATGGTTATATGAA
104800267 AATAAATATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.42, C:0.01, G:0.20, T:0.37
Consensus pattern (40 bp):
ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
Found at i:104800282 original size:40 final size:39
Alignment explanation
Indices: 104800198--104800322 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 39
104800188 CAGTTATATG
* * * *
104800198 GAAATAGATATATGAAATGGTTATATGAATTAGTTATATG
1 GAAATAGATATATGGAATGGTTATATGAAATAGATATA-C
*
104800238 GAAATAGATATATGGAATGGTTATATGAAAATAAATATAC
1 GAAATAGATATATGGAATGGTTATATG-AAATAGATATAC
* * * * *
104800278 GAAATGGTTATAT-GAATCGATTATACGGAAATAGATATAT
1 GAAATAGATATATGGAAT-GGTTATA-TGAAATAGATATAC
104800318 GAAAT
1 GAAAT
104800323 GTTTATACGA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.06
40 58 0.82
41 9 0.13
ACGTcount: A:0.46, C:0.02, G:0.19, T:0.33
Consensus pattern (39 bp):
GAAATAGATATATGGAATGGTTATATGAAATAGATATAC
Found at i:104800282 original size:67 final size:67
Alignment explanation
Indices: 104800190--104800334 Score: 202
Period size: 67 Copynumber: 2.2 Consensus size: 67
104800180 ATATGAATCA
* * * * *
104800190 GTTATATGGAAATAGATATATGAAATGGTTATATGAATTAG-TTATATGGAAATAGATATATGGA
1 GTTATATGAAAATAAATATACGAAATGGTTATATGAA-TAGATTATACGGAAATAGATATATGAA
104800254 ATG
65 ATG
*
104800257 GTTATATGAAAATAAATATACGAAATGGTTATATGAATCGATTATACGGAAATAGATATATGAAA
1 GTTATATGAAAATAAATATACGAAATGGTTATATGAATAGATTATACGGAAATAGATATATGAAA
104800322 TG
66 TG
* *
104800324 TTTATACGAAA
1 GTTATATGAAA
104800335 TGTTTTTATA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 2 0.03
67 67 0.97
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.34
Consensus pattern (67 bp):
GTTATATGAAAATAAATATACGAAATGGTTATATGAATAGATTATACGGAAATAGATATATGAAA
TG
Found at i:104800328 original size:27 final size:27
Alignment explanation
Indices: 104800178--104800335 Score: 105
Period size: 27 Copynumber: 5.9 Consensus size: 27
104800168 AATGAAATGT
* *
104800178 TTATATG-AATCAGTTATATGGAAATAG
1 TTATATGAAATGA-TTATACGGAAATAG
* * * *
104800205 ATATATGAAATGGTTATA-TGAATTAG
1 TTATATGAAATGATTATACGGAAATAG
* *
104800231 TTATATGGAAATAGA-TATATGG-AATGG
1 TTATAT-GAAAT-GATTATACGGAAATAG
* * *
104800258 TTATATGAAAATAAATATAC-GAAATGG
1 TTATATG-AAATGATTATACGGAAATAG
104800285 TTATATG-AATCGATTATACGGAAATAG
1 TTATATGAAAT-GATTATACGGAAATAG
* *
104800312 ATATATGAAATGTTTATAC-GAAAT
1 TTATATGAAATGATTATACGGAAAT
104800336 GTTTTTATAC
Statistics
Matches: 104, Mismatches: 17, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
25 3 0.03
26 25 0.24
27 68 0.65
28 8 0.08
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (27 bp):
TTATATGAAATGATTATACGGAAATAG
Found at i:104806257 original size:27 final size:27
Alignment explanation
Indices: 104806227--104806278 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
104806217 GGTTATAGGA
104806227 GGTCCCAATACCCTAAGGGTCATGGGT
1 GGTCCCAATACCCTAAGGGTCATGGGT
104806254 GGTCCCAATACCCTAAGGGTCATGG
1 GGTCCCAATACCCTAAGGGTCATGG
104806279 ACATTACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (27 bp):
GGTCCCAATACCCTAAGGGTCATGGGT
Found at i:104814188 original size:88 final size:88
Alignment explanation
Indices: 104813998--104814914 Score: 1428
Period size: 88 Copynumber: 10.4 Consensus size: 88
104813988 TTTTTTTTTT
* * ** * * * *
104813998 ATCTGCTTTGCTGTTAATGCAGGAAGGCAAGATCTGCT-TCTTTAACTAGCTCCA-CTGCAATCG
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATC-ACAACCG
** *
104814061 ATGGATGCAAGGCTTTGT-T-TTCG
65 AAAGAGGCAAGG-TTTGTGTCTTCG
* * *
104814084 ATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGA
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
104814149 AAGAGGCAAGGTTTGTGTCTTCG
66 AAGAGGCAAGGTTTGTGTCTTCG
* * *
104814172 ATCTGCTTCGCTGTTAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
104814237 AAGAGGCAAGGTTTGTGTCTTCG
66 AAGAGGCAAGGTTTGTGTCTTCG
* * *
104814260 ATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCGA
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
104814325 AAGAGGCAAGGTTTGTGTCTTCG
66 AAGAGGCAAGGTTTGTGTCTTCG
*
104814348 ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
104814413 AAGAGGCAAGGTTTGTGTCTTCG
66 AAGAGGCAAGGTTTGTGTCTTCG
* * *
104814436 ATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCG
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC-TTTTGTCTTCAACCAGCTCCATCACAACCG
104814501 AAAGAGGCAAGGTTTGTGTCTTCG
65 AAAGAGGCAAGGTTTGTGTCTTCG
* * * *
104814525 ATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCGA
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
*
104814590 AAGAGGCAAGATTTGTGTCTTCG
66 AAGAGGCAAGGTTTGTGTCTTCG
* * *
104814613 ATCTGCTTCACTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACAGA
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
104814678 AAGAGGCAAGGTTTGTGTCTTCG
66 AAGAGGCAAGGTTTGTGTCTTCG
* * *
104814701 ATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCG
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC-TTTTGTCTTCAACCAGCTCCATCACAACCG
104814766 AAAGAGGCAAGGTTTGTGTCTTCG
65 AAAGAGGCAAGGTTTGTGTCTTCG
* *
104814790 ATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
104814855 AAGAGGCAAGGTTTGTGTCTTCG
66 AAGAGGCAAGGTTTGTGTCTTCG
*
104814878 ATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTT
1 ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTT
104814915 AACTTCATTG
Statistics
Matches: 771, Mismatches: 54, Indels: 10
0.92 0.06 0.01
Matches are distributed among these distances:
86 39 0.05
87 28 0.04
88 539 0.70
89 165 0.21
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (88 bp):
ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
AAGAGGCAAGGTTTGTGTCTTCG
Found at i:104814571 original size:177 final size:176
Alignment explanation
Indices: 104813998--104814914 Score: 1446
Period size: 177 Copynumber: 5.2 Consensus size: 176
104813988 TTTTTTTTTT
* * * ** * * * *
104813998 ATCTGCTTTGCTGTTAATGCAGGAAGGCAAGATCTGCT-TCTTTAACTAGCTCCA-CTGCAATCG
1 ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATC-ACAACCG
** * *
104814061 ATGGATGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTTTTGT
65 AAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGT
104814124 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
129 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
* *
104814172 ATCTGCTTCGCTGTTAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
1 ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
104814237 AAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCT
66 AAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCT
*
104814302 TCAACCAGCTCTATCACAGCCGAAAGAGGCAAGGTTTGTGTCTTCG
131 TCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
104814348 ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
1 ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
104814413 AAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTTGTC
66 AAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATC-TTTTGTC
*
104814478 TTCAACCAGCTCTATCACAGCCGAAAGAGGCAAGGTTTGTGTCTTCG
130 TTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
* * *
104814525 ATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCGA
1 ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
* * * *
104814590 AAGAGGCAAGATTTGTGTCTTCGATCTGCTTCACTGTCAATGCAGAAAGGCAAGATCTTTTGTCT
66 AAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCT
* *
104814655 TCAACCAGCTCCATCACAACAGAAAGAGGCAAGGTTTGTGTCTTCG
131 TCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
* * * *
104814701 ATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCG
1 ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATC-TTTTGTCTTCAACCAGCTCCATCACAACCG
* * *
104814766 AAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTC
65 AAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTC
*
104814831 TTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
130 TTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
* *
104814878 ATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTT
1 ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTT
104814915 AACTTCATTG
Statistics
Matches: 704, Mismatches: 33, Indels: 10
0.94 0.04 0.01
Matches are distributed among these distances:
174 38 0.05
175 29 0.04
176 296 0.42
177 341 0.48
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (176 bp):
ATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
AAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCT
TCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
Found at i:104814593 original size:265 final size:265
Alignment explanation
Indices: 104814067--104814914 Score: 1486
Period size: 265 Copynumber: 3.2 Consensus size: 265
104814057 ATCGATGGAT
* * *
104814067 GCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTTTTGTCTTCAA
1 GCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAA
* * * *
104814130 CCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTTAATGCAGA
65 CCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGG
* * *
104814195 AAAGCAAGATC-TTTTGTCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTC
130 AAGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCGAAAGAGGCAAGGTTTGTGTCTTC
* * *
104814259 GATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCG
195 GATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCG
104814324 AAAGAG
260 AAAGAG
104814330 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAAC
1 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAAC
104814395 CAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
66 CAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
104814460 AGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCGAAAGAGGCAAGGTTTGTGTCTTCG
131 AGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCGAAAGAGGCAAGGTTTGTGTCTTCG
104814525 ATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCGA
196 ATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCGA
104814590 AAGAG
261 AAGAG
* *
104814595 GCAAGATTTGTGTCTTCGATCTGCTTCACTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAAC
1 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAAC
*
104814660 CAGCTCCATCACAACAGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
66 CAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
104814725 AGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCGAAAGAGGCAAGGTTTGTGTCTTCG
131 AGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCGAAAGAGGCAAGGTTTGTGTCTTCG
* *
104814790 ATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGA
196 ATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCGA
104814855 AAGAG
261 AAGAG
* *
104814860 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTT
1 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTT
104814915 AACTTCATTG
Statistics
Matches: 560, Mismatches: 22, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
262 5 0.01
263 7 0.01
264 118 0.21
265 430 0.77
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (265 bp):
GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAAC
CAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
AGGCAAGATCTTTTTGTCTTCAACCAGCTCTATCACAGCCGAAAGAGGCAAGGTTTGTGTCTTCG
ATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAGCCGA
AAGAG
Found at i:104817094 original size:7 final size:8
Alignment explanation
Indices: 104817069--104817098 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
104817059 CTATTTTGAC
104817069 TTTGATTTT
1 TTTGA-TTT
104817078 TTTGATTT
1 TTTGATTT
104817086 TTTGATTT
1 TTTGATTT
104817094 TTTGA
1 TTTGA
104817099 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:104819706 original size:19 final size:20
Alignment explanation
Indices: 104819677--104819725 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
104819667 CACTTCGTGA
* *
104819677 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
104819696 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
104819716 AAATG-AATGC
1 AAATGTAATGC
104819726 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:104825564 original size:31 final size:31
Alignment explanation
Indices: 104825490--104825617 Score: 114
Period size: 33 Copynumber: 4.0 Consensus size: 31
104825480 AAATTATTTG
* *
104825490 TAAATTTAATGATAAATGAAATATTTTAAAT-TT
1 TAAATATAATGATAAAT--AATA-TTTAAATAAT
** *
104825523 TGCATATAATGATAAATAATTTTTAAATAAT
1 TAAATATAATGATAAATAATATTTAAATAAT
**
104825554 TAAATATAATGATATTTGTAATATTTAAATAAT
1 TAAATATAATGATA--AATAATATTTAAATAAT
** *
104825587 TTGATATAATGATAAATTATATTTAAATAAT
1 TAAATATAATGATAAATAATATTTAAATAAT
104825618 ATCATAAAAT
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
30 7 0.09
31 30 0.39
33 40 0.52
ACGTcount: A:0.48, C:0.01, G:0.06, T:0.45
Consensus pattern (31 bp):
TAAATATAATGATAAATAATATTTAAATAAT
Found at i:104825577 original size:64 final size:63
Alignment explanation
Indices: 104825490--104825617 Score: 168
Period size: 64 Copynumber: 2.0 Consensus size: 63
104825480 AAATTATTTG
* *
104825490 TAAATTTAATGATAAATGAAATATTTTAAAT-TTTGCATATAATGATAAATAATTTTTAAATAAT
1 TAAATATAATGATAAATGAAATA-TTTAAATATTTG-ATATAATGATAAATAATATTTAAATAAT
** * *
104825554 TAAATATAATGATATTTGTAATATTTAAATAATTTGATATAATGATAAATTATATTTAAATAAT
1 TAAATATAATGATAAATGAAATATTTAAAT-ATTTGATATAATGATAAATAATATTTAAATAAT
104825618 ATCATAAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
63 7 0.12
64 45 0.80
65 4 0.07
ACGTcount: A:0.48, C:0.01, G:0.06, T:0.45
Consensus pattern (63 bp):
TAAATATAATGATAAATGAAATATTTAAATATTTGATATAATGATAAATAATATTTAAATAAT
Found at i:104829496 original size:21 final size:20
Alignment explanation
Indices: 104829472--104829511 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
104829462 GTTAAAATTA
*
104829472 AAATTTAAAGTAAATTAAACT
1 AAATTAAAAGTAAA-TAAACT
104829493 AAATTAAAAGTAAATAAAC
1 AAATTAAAAGTAAATAAAC
104829512 ATTTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (20 bp):
AAATTAAAAGTAAATAAACT
Found at i:104834848 original size:19 final size:21
Alignment explanation
Indices: 104834809--104834850 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
104834799 TCTAAATTTA
*
104834809 TTTTTATATTTTTATATTATT
1 TTTTTATATTTTTACATTATT
104834830 TTTTTA-ATTTTTACA-TATT
1 TTTTTATATTTTTACATTATT
104834849 TT
1 TT
104834851 AATTTTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 8 0.40
21 6 0.30
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTATATTTTTACATTATT
Found at i:104839723 original size:17 final size:19
Alignment explanation
Indices: 104839701--104839738 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
104839691 AAGTTAATTC
104839701 AAAACAT-AAAAT-TTATA
1 AAAACATAAAAATGTTATA
104839718 AAAACATAAAAATGTTATA
1 AAAACATAAAAATGTTATA
104839737 AA
1 AA
104839739 TTAATTAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 5 0.26
19 7 0.37
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
AAAACATAAAAATGTTATA
Found at i:104840096 original size:9 final size:9
Alignment explanation
Indices: 104840082--104840120 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
104840072 TTCTTATAGT
*
104840082 TTTTAATTA
1 TTTTAATAA
104840091 TTTTAA-AA
1 TTTTAATAA
*
104840099 TTTTTATAA
1 TTTTAATAA
104840108 TTTTAATAA
1 TTTTAATAA
104840117 TTTT
1 TTTT
104840121 TTTAATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
8 6 0.23
9 20 0.77
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTTAATAA
Found at i:104840102 original size:18 final size:18
Alignment explanation
Indices: 104840090--104840129 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
104840080 GTTTTTAATT
104840090 ATTTTAA-AATTTTTATA
1 ATTTTAATAATTTTTATA
*
104840107 ATTTTAATAATTTTTTTA
1 ATTTTAATAATTTTTATA
104840125 ATTTT
1 ATTTT
104840130 TTATTCTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTTAATAATTTTTATA
Found at i:104840131 original size:20 final size:19
Alignment explanation
Indices: 104840081--104840132 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
104840071 TTTCTTATAG
104840081 TTTTTAATTATTTTAAAATT
1 TTTTTAATT-TTTTAAAATT
*
104840101 TTTATAA--TTTTAATAATT
1 TTTTTAATTTTTTAA-AATT
104840119 TTTTTAATTTTTTA
1 TTTTTAATTTTTTA
104840133 TTCTAAACTG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 6 0.22
18 10 0.37
20 11 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTAATTTTTTAAAATT
Found at i:104850103 original size:21 final size:20
Alignment explanation
Indices: 104850078--104850142 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
104850068 TAGCCTTCGG
104850078 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTT-TGT
** * *
104850099 GCTT-CAATTAGC-CTTCGG
1 GCTTCCGTTTAGCACTTTGT
104850117 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCAC-TTTGT
104850138 GCTTC
1 GCTTC
104850143 AGTTAGATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 5 0.15
19 9 0.27
20 7 0.21
21 12 0.36
ACGTcount: A:0.12, C:0.26, G:0.20, T:0.42
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTTTGT
Found at i:104850155 original size:39 final size:39
Alignment explanation
Indices: 104850060--104850148 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
104850050 GCTCTGATGA
104850060 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
104850099 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
104850138 GCTTCAGTTAG
1 GCTTCAGTTAG
104850149 ATTTCGGTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.13, C:0.25, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:104859140 original size:21 final size:20
Alignment explanation
Indices: 104859115--104859179 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
104859105 TAGCCTTCGG
104859115 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTT-TGT
** * *
104859136 GCTT-CAATTAGC-CTTCGG
1 GCTTCCGTTTAGCACTTTGT
104859154 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCAC-TTTGT
104859175 GCTTC
1 GCTTC
104859180 AGTTAGATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 5 0.15
19 9 0.27
20 7 0.21
21 12 0.36
ACGTcount: A:0.12, C:0.26, G:0.20, T:0.42
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTTTGT
Found at i:104859192 original size:39 final size:39
Alignment explanation
Indices: 104859097--104859185 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
104859087 GCTCTGATGA
104859097 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
104859136 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
104859175 GCTTCAGTTAG
1 GCTTCAGTTAG
104859186 ATTTCGGTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.13, C:0.25, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:104860431 original size:20 final size:18
Alignment explanation
Indices: 104860408--104860450 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
104860398 AGCCCCCCCC
104860408 AAAAAACCTAACCCCCAAAA
1 AAAAAACCTAA--CCCAAAA
104860428 AAAAAACCTAACCCAAAA
1 AAAAAACCTAACCCAAAA
104860446 AAAAA
1 AAAAA
104860451 CTAAGAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 12 0.52
20 11 0.48
ACGTcount: A:0.67, C:0.28, G:0.00, T:0.05
Consensus pattern (18 bp):
AAAAAACCTAACCCAAAA
Found at i:104860905 original size:22 final size:22
Alignment explanation
Indices: 104860875--104860924 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
104860865 CGGATTTCCT
*
104860875 TTTCCCCCTCCCTTCTCTCTTC
1 TTTCTCCCTCCCTTCTCTCTTC
* * * *
104860897 TTTCTCCCTTCCTTTTTTTTTC
1 TTTCTCCCTCCCTTCTCTCTTC
104860919 TTTCTC
1 TTTCTC
104860925 TCTTCAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTCTCCCTCCCTTCTCTCTTC
Found at i:104861462 original size:15 final size:17
Alignment explanation
Indices: 104861434--104861465 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
104861424 TTGTATATAT
104861434 TATATTTATATTATGTA
1 TATATTTATATTATGTA
104861451 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
104861466 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:104864035 original size:24 final size:24
Alignment explanation
Indices: 104863992--104864041 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
104863982 TTCCTTTCTT
*
104863992 TTGCATTCATTCCATACATTTGCA
1 TTGCATTCATTCCATACATTGGCA
*
104864016 TTGCATTGCATTGCAT-CATTGGCA
1 TTGCATT-CATTCCATACATTGGCA
104864040 TT
1 TT
104864042 AAACTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (24 bp):
TTGCATTCATTCCATACATTGGCA
Found at i:104871134 original size:18 final size:18
Alignment explanation
Indices: 104871099--104871132 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
104871089 GTACAAGAGC
104871099 CTCAACGCAAGGACAAAG
1 CTCAACGCAAGGACAAAG
*
104871117 CTCAAC-CAAGGGCAAA
1 CTCAACGCAAGGACAAA
104871133 AGAGTGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.29, G:0.21, T:0.06
Consensus pattern (18 bp):
CTCAACGCAAGGACAAAG
Found at i:104871916 original size:166 final size:165
Alignment explanation
Indices: 104871579--104872207 Score: 821
Period size: 166 Copynumber: 3.9 Consensus size: 165
104871569 GGTATTTTTT
*
104871579 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * **
104871644 TTTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGG-CACACGCCGAGG
*
104871709 TATTTTCAATTTTCGTTTTTCAATTTCTACCTTTCA
130 TATTTTCAATTTCCGTTTTTCAATTTCTACCTTTCA
*
104871745 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGAGACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * **
104871810 TTTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGA-TTGAGCCTTAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGG-CACACGCCGAGG
104871874 TATTTTCAATTTCCGTTTTTCAATTTCTACCTTTCAA
130 TATTTTCAATTTCCGTTTTTCAATTTCTACCTTTC-A
104871911 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * * * *
104871976 TCTGTTGTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACATGCTGA
66 TCTGTTGTC---AAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGGCACACGCCGA
*
104872040 GGTATTTTCAA---------TT---TTTGT--CTTTC-
128 GGTATTTTCAATTTCCGTTTTTCAATTTCTACCTTTCA
* *
104872063 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * * * * *
104872128 TCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC-TCGGGACACGCTGAGGT
66 TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGGCACACGCCGAGGT
* *
104872190 AATTTCAATTTCTGTTTT
131 ATTTTCAATTTCCGTTTT
104872208 CAAAATTTAA
Statistics
Matches: 425, Mismatches: 23, Indels: 40
0.87 0.05 0.08
Matches are distributed among these distances:
146 1 0.00
147 53 0.12
152 71 0.17
154 5 0.01
156 5 0.01
159 2 0.00
165 59 0.14
166 175 0.41
168 18 0.04
169 26 0.06
170 10 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (165 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGGCACACGCCGAGGT
ATTTTCAATTTCCGTTTTTCAATTTCTACCTTTCA
Found at i:104872180 original size:72 final size:73
Alignment explanation
Indices: 104871912--104872838 Score: 1159
Period size: 72 Copynumber: 12.6 Consensus size: 73
104871902 ACCTTTCAAA
** *
104871912 AAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
*
104871977 CTGTTGTC
66 CTGTTTTC
* * *
104871985 AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCA
1 ----AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
*
104872050 ATTTTTGTCTTTC
62 ATTTCTGT-TTTC
* **
104872063 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
104872128 TCTGTTTTC
65 TCTGTTTTC
* *
104872137 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
104872201 CTGTTTTC
66 CTGTTTTC
* * * *
104872209 -AAAATTTAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
*
104872273 CTATTTTC
66 CTGTTTTC
* * ** *
104872281 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
104872345 CTGTTTTC
66 CTGTTTTC
* ** * *
104872353 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCA
* *
104872417 ATTTTTATCTTTC
62 ATTTCTGT-TTTC
* **
104872430 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
104872495 TCTGTTTTC
65 TCTGTTTTC
* *
104872504 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
104872568 CTGTTTTC
66 CTGTTTTC
* * * *
104872576 -AAAATTTAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
104872640 CTGTTTTC
66 CTGTTTTC
* * * * *
104872648 -AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
104872712 CTGTTTTC
66 CTGTTTTC
* ** * *
104872720 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCA
*
104872784 ATTTTTGTCTTTC
62 ATTTCTGT-TTTC
** *
104872797 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
104872839 ATCACACACT
Statistics
Matches: 765, Mismatches: 70, Indels: 29
0.89 0.08 0.03
Matches are distributed among these distances:
72 404 0.53
73 2 0.00
74 75 0.10
75 86 0.11
76 46 0.06
77 146 0.19
78 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
CTGTTTTC
Found at i:104872592 original size:367 final size:367
Alignment explanation
Indices: 104871913--104872838 Score: 1633
Period size: 367 Copynumber: 2.5 Consensus size: 367
104871903 CCTTTCAAAA
* ** * * * *
104871913 AAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* * ** *
104871978 TGTTGTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACATGCTGA
66 TGTTTTC---AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGA
104872040 GGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAG
127 GGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAG
104872105 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
192 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
104872170 GCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTTAACTCATATTACGAGAAAT
257 GCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTTAACTCATATTACGAGAAAT
104872235 GAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
322 GAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
*
104872281 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
104872346 TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
66 TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
*
104872411 TTTTCAATTTTTATCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACA
131 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACA
104872476 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
196 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
104872541 CGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTTAACTCATATTACGAGAAATGAGT
261 CGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTTAACTCATATTACGAGAAATGAGT
*
104872606 TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC
326 TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
*
104872648 AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
104872713 TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
66 TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
* *
104872778 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
131 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAG
104872839 ATCACACACT
Statistics
Matches: 535, Mismatches: 20, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
364 1 0.00
365 37 0.07
367 434 0.81
368 63 0.12
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (367 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
CGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTTAACTCATATTACGAGAAATGAGT
TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
Found at i:104873648 original size:17 final size:16
Alignment explanation
Indices: 104873596--104873658 Score: 60
Period size: 17 Copynumber: 4.0 Consensus size: 16
104873586 CATTAAGCCC
104873596 CCAAAAAAAAACCTAA
1 CCAAAAAAAAACCTAA
**
104873612 CCCAAAAAAAAA-AGAA
1 -CCAAAAAAAAACCTAA
104873628 --AAAAGAAAAACCTAA
1 CCAAAA-AAAAACCTAA
*
104873643 CCAAAAAAAAAACTAA
1 CCAAAAAAAAACCTAA
104873659 GAAACCCTAG
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
13 4 0.11
14 5 0.14
15 2 0.05
16 11 0.30
17 15 0.41
ACGTcount: A:0.73, C:0.19, G:0.03, T:0.05
Consensus pattern (16 bp):
CCAAAAAAAAACCTAA
Found at i:104873649 original size:30 final size:30
Alignment explanation
Indices: 104873598--104873654 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
104873588 TTAAGCCCCC
104873598 AAAAAAAAACCTAACCCAAAAAAAAAAGAA
1 AAAAAAAAACCTAACCCAAAAAAAAAAGAA
104873628 AAAAGAAAAACCTAA-CCAAAAAAAAAA
1 AAAA-AAAAACCTAACCCAAAAAAAAAA
104873655 CTAAGAAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.77, C:0.16, G:0.04, T:0.04
Consensus pattern (30 bp):
AAAAAAAAACCTAACCCAAAAAAAAAAGAA
Found at i:104874113 original size:22 final size:22
Alignment explanation
Indices: 104874083--104874132 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
104874073 TCCTTTTCCC
*
104874083 CCCTCCCTTCTCTCTTCTTTCT
1 CCCTTCCTTCTCTCTTCTTTCT
* * *
104874105 CCCTTCCTTTTTTTTTCTTTCT
1 CCCTTCCTTCTCTCTTCTTTCT
*
104874127 CTCTTC
1 CCCTTC
104874133 AAAATGATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (22 bp):
CCCTTCCTTCTCTCTTCTTTCT
Found at i:104874670 original size:15 final size:17
Alignment explanation
Indices: 104874642--104874673 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
104874632 TTGTATACAT
104874642 TATATTTATATTATGTA
1 TATATTTATATTATGTA
104874659 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
104874674 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:104874763 original size:22 final size:20
Alignment explanation
Indices: 104874702--104874773 Score: 60
Period size: 19 Copynumber: 3.6 Consensus size: 20
104874692 TTTATTGTAG
* *
104874702 ATATTATTATTATTAT-TAC
1 ATATTATTATTTTTATGCAC
*
104874721 ATACTT-TTA-TTATATGCAC
1 ATA-TTATTATTTTTATGCAC
*
104874740 ATATATATGTATTTTTATGTAC
1 ATAT-TAT-TATTTTTATGCAC
104874762 ATATTATTATTT
1 ATATTATTATTT
104874774 CATATTATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
18 5 0.12
19 12 0.29
20 8 0.19
21 5 0.12
22 12 0.29
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (20 bp):
ATATTATTATTTTTATGCAC
Found at i:104874779 original size:13 final size:13
Alignment explanation
Indices: 104874761--104874785 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104874751 TTTTTATGTA
104874761 CATATTATTATTT
1 CATATTATTATTT
104874774 CATATTATTATT
1 CATATTATTATT
104874786 ACCAAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (13 bp):
CATATTATTATTT
Found at i:104879167 original size:21 final size:21
Alignment explanation
Indices: 104879142--104879182 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
104879132 TACTAGGTAG
104879142 ATAAAAAATGAATAC-TACGAT
1 ATAAAAAAT-AATACATACGAT
*
104879163 ATAAAGAATAATACATACGA
1 ATAAAAAATAATACATACGA
104879183 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAAAAAATAATACATACGAT
Found at i:104879843 original size:30 final size:27
Alignment explanation
Indices: 104879808--104879866 Score: 73
Period size: 30 Copynumber: 2.1 Consensus size: 27
104879798 ATGTAATATA
104879808 AACATATAAGAAAAATAATAGATATAAAGT
1 AACATATAA-AAAAAT-ATAGATAT-AAGT
* *
104879838 AACATATAAAACAATATATATATAAGT
1 AACATATAAAAAAATATAGATATAAGT
104879865 AA
1 AA
104879867 TTAATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 6 0.22
28 7 0.26
29 5 0.19
30 9 0.33
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.25
Consensus pattern (27 bp):
AACATATAAAAAAATATAGATATAAGT
Found at i:104879899 original size:26 final size:27
Alignment explanation
Indices: 104879819--104879901 Score: 84
Period size: 26 Copynumber: 3.1 Consensus size: 27
104879809 ACATATAAGA
* * *
104879819 AAAATAATAGATATA-AAGTAACATAT
1 AAAACAATATATATATAAGTAATATAT
104879845 AAAACAATATATATATAAGTAAT-TAAT
1 AAAACAATATATATATAAGTAATAT-AT
*
104879872 AAATATAATATAT-TATAA-TAATATAT
1 AAA-ACAATATATATATAAGTAATATAT
104879898 AAAA
1 AAAA
104879902 AGATGTAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
25 1 0.02
26 23 0.47
27 17 0.35
28 8 0.16
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (27 bp):
AAAACAATATATATATAAGTAATATAT
Found at i:104879955 original size:22 final size:22
Alignment explanation
Indices: 104879850--104879959 Score: 80
Period size: 22 Copynumber: 5.4 Consensus size: 22
104879840 CATATAAAAC
104879850 AATATATAT-ATAAGTAAT--T
1 AATATATATAATAAGTAATAAT
* *
104879869 AATAAATATAATATA-TTATAAT
1 AATATATATAATA-AGTAATAAT
*
104879891 AATATATA-AAAAGATGTAA-AAT
1 AATATATATAATA-A-GTAATAAT
*
104879913 AATA-AT-T--TAAGGAA-AAT
1 AATATATATAATAAGTAATAAT
104879930 AATATATATAATAAGTAATAAT
1 AATATATATAATAAGTAATAAT
104879952 AATATATA
1 AATATATA
104879960 ATTAAAAATA
Statistics
Matches: 70, Mismatches: 9, Indels: 21
0.70 0.09 0.21
Matches are distributed among these distances:
17 10 0.14
18 3 0.04
19 10 0.14
20 6 0.09
21 13 0.19
22 26 0.37
23 2 0.03
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (22 bp):
AATATATATAATAAGTAATAAT
Found at i:104879968 original size:39 final size:39
Alignment explanation
Indices: 104879845--104879972 Score: 104
Period size: 39 Copynumber: 3.2 Consensus size: 39
104879835 AGTAACATAT
*
104879845 AAAACAATATATAT-ATAAGTAATTAATAA-ATATAATATA
1 AAAATAATATATATAATAAGTAA-TAATAATATATAAT-TA
* * * **
104879884 TTATAATAATATATA-AAAAGATGTAA-AATAATAATTTAA-GG
1 --AAAATAATATATATAATA-A-GTAATAATAAT-ATATAATTA
104879925 AAAATAATATATATAATAAGTAATAATAATATATAATTA
1 AAAATAATATATATAATAAGTAATAATAATATATAATTA
104879964 AAAATAATA
1 AAAATAATA
104879973 CTCATAATAA
Statistics
Matches: 68, Mismatches: 11, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
38 9 0.13
39 28 0.41
40 3 0.04
41 18 0.26
42 1 0.01
43 9 0.13
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.34
Consensus pattern (39 bp):
AAAATAATATATATAATAAGTAATAATAATATATAATTA
Found at i:104879969 original size:17 final size:18
Alignment explanation
Indices: 104879930--104879972 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
104879920 TAAGGAAAAT
*
104879930 AATATATATAATAAGTAAT
1 AATA-ATATAATAAGTAAA
*
104879949 AATAATAT-ATAATTAAA
1 AATAATATAATAAGTAAA
104879966 AATAATA
1 AATAATA
104879973 CTCATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 4 0.18
19 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAATATAATAAGTAAA
Found at i:104879969 original size:20 final size:19
Alignment explanation
Indices: 104879908--104879972 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 19
104879898 AAAAAGATGT
**
104879908 AAAATAATAAT-T-TAAGG
1 AAAATAATAATATATAATA
104879925 AAAATAAT-ATATATAATA
1 AAAATAATAATATATAATA
*
104879943 AGTAATAATAATATATAATTA
1 A-AAATAATAATATATAA-TA
104879964 AAAATAATA
1 AAAATAATA
104879973 CTCATAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 2 0.05
17 9 0.23
18 4 0.10
19 6 0.15
20 15 0.38
21 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AAAATAATAATATATAATA
Found at i:104880004 original size:23 final size:25
Alignment explanation
Indices: 104879967--104880012 Score: 62
Period size: 23 Copynumber: 1.9 Consensus size: 25
104879957 ATAATTAAAA
104879967 ATAATACTCATAATA-AAACAATTTT
1 ATAATACTCATAATATAAA-AATTTT
104879992 ATAATA-T-ATAATATAAAAATT
1 ATAATACTCATAATATAAAAATT
104880013 AAAATTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 10 0.50
24 4 0.20
25 6 0.30
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATACTCATAATATAAAAATTTT
Done.