Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 320 of 344
Found at i:104881731 original size:83 final size:83
Alignment explanation
Indices: 104881587--104881781 Score: 275
Period size: 83 Copynumber: 2.3 Consensus size: 83
104881577 TTCGATTTGT
* * * *
104881587 AAGGATGTCAAATTATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCTATGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
*
104881652 TTTATTCCTTGTAAGCAC
66 TTTATTCCTTGTAAACAC
* *
104881670 AAGGATGCCAAAACATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
* *
104881735 TTTGTTTCTTGTAAACAC
66 TTTATTCCTTGTAAACAC
* *
104881753 AAGAATACCAAATCATCTTG-GATCTGCTT
1 AAGGATGCCAAATCATCTTGAG-TCTGCTT
104881782 CAGTATAAAC
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
82 1 0.01
83 97 0.99
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (83 bp):
AAGGATGCCAAATCATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
TTTATTCCTTGTAAACAC
Found at i:104881960 original size:202 final size:202
Alignment explanation
Indices: 104881614--104882285 Score: 1191
Period size: 202 Copynumber: 3.3 Consensus size: 202
104881604 TTGAGTCTGC
* * * *
104881614 TTGAGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTATTCCTTGTAAGCACAAGGATGCC
1 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
*
104881679 AAAACATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCT
66 AAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCT
104881744 TGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCT
131 TGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCT
104881809 GCTATAT
196 GCTATAT
*
104881816 TTGAGAACGTCTGAGAGTCAAATCTTCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
1 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
*
104881881 AAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCCTATCTGCAACGTCCTCGATTTGTTTCT
66 AAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCT
*
104881946 TGTAAACACAAGAATACAAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCT
131 TGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCT
104882011 GCTATAT
196 GCTATAT
*
104882018 GTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
1 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
*
104882083 AAATCGTCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCT
66 AAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCT
* *
104882148 TGTAAACACAAGAATACCAAATCATCTTGGATTTGCTTCAGTATAAACATCTGAAGGTTAGCTCT
131 TGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCT
104882213 GCTATAT
196 GCTATAT
* *** *
104882220 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCAATTTGTTCCCCATAAGCACAGGGATGCC
1 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
104882285 A
66 A
104882286 TGTTGAAATC
Statistics
Matches: 449, Mismatches: 21, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
202 449 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (202 bp):
TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
AAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCT
TGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCT
GCTATAT
Found at i:104882158 original size:83 final size:83
Alignment explanation
Indices: 104882019--104882176 Score: 226
Period size: 83 Copynumber: 1.9 Consensus size: 83
104882009 CTGCTATATG
* * * * * *
104882019 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
1 TGAGAACATCTGAGAGTCAAATCTGCAACGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
*
104882084 AATCGTCTTGAGTCTGTT
66 AATCATCTTGAGTCTGTT
* * *
104882102 TGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCAACGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
104882167 AATCATCTTG
66 AATCATCTTG
104882177 GATTTGCTTC
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
83 65 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (83 bp):
TGAGAACATCTGAGAGTCAAATCTGCAACGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
AATCATCTTGAGTCTGTT
Found at i:104883133 original size:21 final size:20
Alignment explanation
Indices: 104883109--104883167 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 20
104883099 AGCCTCTCCA
104883109 TTTTTTCTTTTTTTTCTTTAT
1 TTTTTTCTTTTTTTTCTTT-T
104883130 TTTTTTCTCTTTTTCTT-TTCTT
1 TTTTTTCT-TTTTT-TTCTT-TT
104883152 TTTTTTCCTTTTTTTT
1 TTTTTT-CTTTTTTTT
104883168 GAAATAGAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
21 10 0.29
22 19 0.56
23 5 0.15
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTTCTTTTTTTTCTTTT
Found at i:104883134 original size:13 final size:12
Alignment explanation
Indices: 104883116--104883157 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
104883106 CCATTTTTTC
104883116 TTTTTTTTCTTT
1 TTTTTTTTCTTT
*
104883128 ATTTTTTTCTCTT
1 TTTTTTTTCT-TT
*
104883141 TTTCTTTTCTTT
1 TTTTTTTTCTTT
104883153 TTTTT
1 TTTTT
104883158 CCTTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:104888450 original size:20 final size:21
Alignment explanation
Indices: 104888418--104888457 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
104888408 TACTAGGTAG
104888418 ATAAAAATGAATAC-TACGAT
1 ATAAAAATGAATACATACGAT
104888438 ATAAAGAAT-AATACATACGA
1 ATAAA-AATGAATACATACGA
104888458 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.23
Consensus pattern (21 bp):
ATAAAAATGAATACATACGAT
Found at i:104889239 original size:17 final size:18
Alignment explanation
Indices: 104889200--104889242 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
104889190 TAAGGAAAAT
*
104889200 AATATATATAATAAGTAAT
1 AATA-ATATAATAAGTAAA
*
104889219 AATAATAT-ATAATTAAA
1 AATAATATAATAAGTAAA
104889236 AATAATA
1 AATAATA
104889243 CTCATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 4 0.18
19 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAATATAATAAGTAAA
Found at i:104889239 original size:20 final size:19
Alignment explanation
Indices: 104889178--104889242 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 19
104889168 AAAAAGATGT
**
104889178 AAAATAATAAT-T-TAAGG
1 AAAATAATAATATATAATA
104889195 AAAATAAT-ATATATAATA
1 AAAATAATAATATATAATA
*
104889213 AGTAATAATAATATATAATTA
1 A-AAATAATAATATATAA-TA
104889234 AAAATAATA
1 AAAATAATA
104889243 CTCATAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 2 0.05
17 9 0.23
18 4 0.10
19 6 0.15
20 15 0.38
21 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AAAATAATAATATATAATA
Found at i:104889323 original size:19 final size:19
Alignment explanation
Indices: 104889299--104889336 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
104889289 AAAATAAACA
*
104889299 AATAATACAATAGATATAG
1 AATAATACAATAAATATAG
*
104889318 AATAATATAATAAATATAG
1 AATAATACAATAAATATAG
104889337 GACTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.29
Consensus pattern (19 bp):
AATAATACAATAAATATAG
Found at i:104893989 original size:24 final size:23
Alignment explanation
Indices: 104893939--104893989 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
104893929 TTTTCCAATT
*
104893939 TTATTTTGTTTTTCATTATTTTTA
1 TTATTTTGTTTTT-ATTATTTTGA
104893963 TTATTTTGTTTTT-TTCATTGTTGA
1 TTATTTTGTTTTTATT-ATT-TTGA
104893987 TTA
1 TTA
104893990 AGAAAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 2 0.08
23 3 0.12
24 19 0.79
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.73
Consensus pattern (23 bp):
TTATTTTGTTTTTATTATTTTGA
Found at i:104905849 original size:21 final size:21
Alignment explanation
Indices: 104905825--104905900 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
104905815 TGAGTTTCAT
104905825 TTTAACCCTTATGGGTTTCCA
1 TTTAACCCTTATGGGTTTCCA
* ** *
104905846 TTTAGCTCC-TATAAGCTTCCA
1 TTTAAC-CCTTATGGGTTTCCA
* *
104905867 TTTAACCCTTACGGGTTTCCG
1 TTTAACCCTTATGGGTTTCCA
* *
104905888 TTTAGCACTTATG
1 TTTAACCCTTATG
104905901 TGCTTCTGTG
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
20 2 0.05
21 36 0.90
22 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (21 bp):
TTTAACCCTTATGGGTTTCCA
Found at i:104906959 original size:26 final size:25
Alignment explanation
Indices: 104906922--104907004 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
104906912 TGATACAAAT
*
104906922 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
104906948 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
104906974 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
104906999 TGATAA
1 TGATAA
104907005 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 10 0.18
26 43 0.78
27 2 0.04
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:104909036 original size:137 final size:137
Alignment explanation
Indices: 104908790--104909065 Score: 516
Period size: 137 Copynumber: 2.0 Consensus size: 137
104908780 AAGTAGTCTC
104908790 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGAGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGAGCCTATGGGCCATAC
**
104908855 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCAAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
104908920 ACTGTTA
131 ACTGTTA
* *
104908927 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATTTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGAGCCTATGGGCCATAC
104908992 TGTTATCTGAATAAGGGGCTAAGGCCAAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCAAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
104909057 ACTGTTA
131 ACTGTTA
104909064 CC
1 CC
104909066 TGAATGCGCT
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 135 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGAGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCAAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:104914355 original size:18 final size:18
Alignment explanation
Indices: 104914326--104914415 Score: 137
Period size: 18 Copynumber: 4.9 Consensus size: 18
104914316 ATAATCTTCA
104914326 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
104914345 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
104914363 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
104914380 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
104914398 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
104914416 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
17 16 0.24
18 34 0.52
19 16 0.24
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:104914367 original size:37 final size:36
Alignment explanation
Indices: 104914326--104914415 Score: 155
Period size: 35 Copynumber: 2.5 Consensus size: 36
104914316 ATAATCTTCA
104914326 ATGATATGCAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATAT-CAATCTTAGATATGATTGCAATCTTAGAT
104914363 ATGATA-CAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATCAATCTTAGATATGATTGCAATCTTAGAT
104914398 ATGATATACAATCTTAGA
1 ATGATAT-CAATCTTAGA
104914416 AGATATGATT
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
35 35 0.69
37 16 0.31
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
ATGATATCAATCTTAGATATGATTGCAATCTTAGAT
Found at i:104914922 original size:17 final size:16
Alignment explanation
Indices: 104914898--104914952 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
104914888 TAAACCAATA
104914898 TATTTTATATAATTAT
1 TATTTTATATAATTAT
104914914 TATTCTTATA-AATATAT
1 TATT-TTATATAAT-TAT
*
104914931 TTTTATTATAT-ATTA-
1 TATT-TTATATAATTAT
104914946 TATTTTA
1 TATTTTA
104914953 AATTTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 3 0.09
15 3 0.09
16 9 0.27
17 18 0.55
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTTATATAATTAT
Found at i:104914976 original size:26 final size:25
Alignment explanation
Indices: 104914929--104914977 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
104914919 TTATAAATAT
* * *
104914929 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
104914954 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
104914978 TTATATGCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:104920020 original size:56 final size:56
Alignment explanation
Indices: 104919959--104920070 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
104919949 TGACAACAAA
104919959 GTATGCCATCCAAAGAACAATGATTTTTACCTTGGTACCCATGTTGGAATGATCGG
1 GTATGCCATCCAAAGAACAATGATTTTTACCTTGGTACCCATGTTGGAATGATCGG
104920015 GTATGCCATCCAAAGAACAATGATTTTTACCTTGGTACCCATGTTGGAATGATCGG
1 GTATGCCATCCAAAGAACAATGATTTTTACCTTGGTACCCATGTTGGAATGATCGG
104920071 AATCACGAGG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (56 bp):
GTATGCCATCCAAAGAACAATGATTTTTACCTTGGTACCCATGTTGGAATGATCGG
Found at i:104921916 original size:44 final size:44
Alignment explanation
Indices: 104921777--104921951 Score: 142
Period size: 44 Copynumber: 4.0 Consensus size: 44
104921767 AAGAAACAAG
* * * *
104921777 ATTTGGCATCCCTGTGTTTATAGGGAACAGAACGAAGATAGCAG
1 ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCAA
* * * * * * ** *
104921821 ATCTGACATTCCTGTGCTT-ACAGCGAAGCAGATTGAAGATTTCAGC
1 ATTTGGCATCCCTGTG-TTCATAGAGAA-CAGATCGAAGATAGCA-A
* *
104921867 A--TGGCATCCCTGTGTTCATAGGGAAC-GAGTTGAAGATAGCAA
1 ATTTGGCATCCCTGTGTTCATAGAGAACAGA-TCGAAGATAGCAA
*
104921909 ATTTGGCATCCCTGTGTTTATAGAGAACAGATCGAAGATAGCA
1 ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCA
104921952 GATCTAACCT
Statistics
Matches: 103, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 3 0.03
43 13 0.13
44 70 0.68
45 16 0.16
46 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (44 bp):
ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCAA
Found at i:104922107 original size:121 final size:121
Alignment explanation
Indices: 104921946--104922165 Score: 350
Period size: 121 Copynumber: 1.8 Consensus size: 121
104921936 CAGATCGAAG
* * **
104921946 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTATGT
1 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTGGCATCCTTATAC
*
104922011 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
66 TTACAAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
* * *
104922067 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTAC
1 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTGGCATCCTTATAC
* *
104922132 TTACAAGGAGCAAATCGAAGACATAGCTGATTTG
66 TTACAAGGAACAAATCGAAGACATAGCAGATTTG
104922166 GCTTTCACGT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
121 89 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (121 bp):
ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTGGCATCCTTATAC
TTACAAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
Found at i:104922406 original size:83 final size:83
Alignment explanation
Indices: 104922313--104922865 Score: 923
Period size: 83 Copynumber: 6.7 Consensus size: 83
104922303 AAAGTAGATC
*
104922313 CAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCT-A
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
104922377 GGATGTTCTCAAACAGACT
66 -GATGTTCTCAAACAGACT
*
104922396 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATGGCAGATTAGACTCT-A
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
104922460 GGATGTTCTCAAACAGACT
66 -GATGTTCTCAAACAGACT
*
104922479 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCG
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
104922544 GATGTTCTCAAACAGATT
66 GATGTTCTCAAACAGACT
* * *
104922562 TAAGATGGTTTGGCGTTCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
104922627 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
*
104922645 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
104922710 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * ** *
104922728 CAAGATGATTTGGCATTCTTGTGCTTACAAAAAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
104922793 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * *
104922811 TAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-GACATAGCTGATT
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATT
104922866 TGGCTTTCAC
Statistics
Matches: 446, Mismatches: 23, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
82 12 0.03
83 434 0.97
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
GATGTTCTCAAACAGACT
Found at i:104923681 original size:35 final size:35
Alignment explanation
Indices: 104923635--104923776 Score: 248
Period size: 35 Copynumber: 4.0 Consensus size: 35
104923625 ATAATCTTCA
104923635 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
104923671 ATGATTGCAATATTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
104923706 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
104923741 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
104923777 AGATATGATT
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
35 84 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:104924306 original size:15 final size:16
Alignment explanation
Indices: 104924263--104924321 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
104924253 CAATATATTT
*
104924263 TATATATTTTATATAA
1 TATATTTTTTATATAA
104924279 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
104924295 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
104924313 TTATATTTT
1 -TATATTTT
104924322 AAATTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
15 6 0.17
16 10 0.29
17 10 0.29
18 1 0.03
19 8 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:104924325 original size:30 final size:29
Alignment explanation
Indices: 104924256--104924330 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
104924246 TCTAAACCAA
104924256 TATATTTT--ATATATTTTATATAATTAT
1 TATATTTTAAATATATTTTATATAATTAT
* *
104924283 TAT-TCTTATAAATATATTTTTTATTATATAT
1 TATAT-TT-TAAATATATTTTATATAAT-TAT
*
104924314 TATATTTTAAATTTATT
1 TATATTTTAAATATATT
104924331 ATTAAATATC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.03
27 5 0.13
28 1 0.03
30 23 0.59
31 8 0.21
32 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (29 bp):
TATATTTTAAATATATTTTATATAATTAT
Found at i:104924346 original size:26 final size:26
Alignment explanation
Indices: 104924298--104924347 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
104924288 TTATAAATAT
* * * *
104924298 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
104924324 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
104924348 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:104932658 original size:42 final size:42
Alignment explanation
Indices: 104932608--104932692 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
104932598 TTAAGTTTGG
104932608 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
1 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
*
104932650 TATATTTTAGAGGATGATTTGTATCATTAATAATTTTTTTAA
1 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
104932692 T
1 T
104932693 TTATATATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (42 bp):
TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
Found at i:104933177 original size:3 final size:3
Alignment explanation
Indices: 104933169--104933212 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
104933159 TAATATCCCT
*
104933169 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
104933213 TGATGTTACT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:104933396 original size:33 final size:33
Alignment explanation
Indices: 104933359--104933463 Score: 147
Period size: 33 Copynumber: 3.2 Consensus size: 33
104933349 AATTAGACAG
* * *
104933359 ATAATTAAAGCTTAGATACATTGTTTTCGTATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
* *
104933392 ATAATTGCAGCTTACATACATTGTTTTCCTATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
* *
104933425 ATAATTACAGCTTATATACATTGTTTTTATATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
104933458 ATAATT
1 ATAATT
104933464 TTTTTTAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (33 bp):
ATAATTACAGCTTACATACATTGTTTTCATATT
Found at i:104933679 original size:42 final size:42
Alignment explanation
Indices: 104933603--104933683 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
104933593 TAATTGACTT
* * *
104933603 TATCACAATTTAAACACGACATATTTAAAGTGATTGCAAACA
1 TATCACAATTCAAACACGACATATCTAAAATGATTGCAAACA
104933645 TATCACAATTCAAACACGACATA-CTAAGAATGATTGCAA
1 TATCACAATTCAAACACGACATATCTAA-AATGATTGCAA
104933684 GCACTTAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 3 0.09
42 32 0.91
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.26
Consensus pattern (42 bp):
TATCACAATTCAAACACGACATATCTAAAATGATTGCAAACA
Found at i:104935216 original size:18 final size:18
Alignment explanation
Indices: 104935190--104935229 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
104935180 TTGAGAAATT
* *
104935190 AGAATATGATAGAAATGA
1 AGAAGATGAGAGAAATGA
*
104935208 AGAAGATGAGGGAAATGA
1 AGAAGATGAGAGAAATGA
104935226 AGAA
1 AGAA
104935230 TTTTATGCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.30, T:0.15
Consensus pattern (18 bp):
AGAAGATGAGAGAAATGA
Found at i:104946530 original size:41 final size:39
Alignment explanation
Indices: 104946445--104946531 Score: 102
Period size: 41 Copynumber: 2.2 Consensus size: 39
104946435 TTGAAATCGA
* * * *
104946445 TTTTTATTTAAAAAAGAATAATAGGAGTCATCACCGATC
1 TTTTTATTTAAAAAAAAAGAATAGGAGTCACCACCAATC
* *
104946484 CTTTTATTTAAAAAAAAAAAGAATAGGAGTCGCCACCAATC
1 TTTTTATTT--AAAAAAAAAGAATAGGAGTCACCACCAATC
104946525 TTTTTAT
1 TTTTTAT
104946532 GATGTGAGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
39 8 0.21
41 31 0.79
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.33
Consensus pattern (39 bp):
TTTTTATTTAAAAAAAAAGAATAGGAGTCACCACCAATC
Found at i:104949298 original size:24 final size:24
Alignment explanation
Indices: 104949271--104949321 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
104949261 ATTTTCACTT
*
104949271 TAATTATTATCATTAA-AATAATAA
1 TAATAATTAT-ATTAACAATAATAA
104949295 TAATAATTATATTAACAATAATAA
1 TAATAATTATATTAACAATAATAA
104949319 TAA
1 TAA
104949322 ATTTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (24 bp):
TAATAATTATATTAACAATAATAA
Found at i:104951050 original size:12 final size:12
Alignment explanation
Indices: 104951035--104951078 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
104951025 TTTATTTATT
*
104951035 TTATTTTTAATC
1 TTATTTTTAATA
104951047 TTATTTTTATATAA
1 TTATTTTTA-AT-A
104951061 TTATTTATTAATA
1 TTATTT-TTAATA
104951074 TTATT
1 TTATT
104951079 GTTATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 9 0.32
13 8 0.29
14 8 0.29
15 3 0.11
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (12 bp):
TTATTTTTAATA
Found at i:104951071 original size:27 final size:27
Alignment explanation
Indices: 104951021--104951083 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
104951011 AAACTCTTTA
* * *
104951021 TATTTTTATTTATTTTATTTTTAATCT
1 TATTTTTATATATATTATTTTTAATAT
104951048 TATTTTTATATA-ATTATTTATTAATAT
1 TATTTTTATATATATTATTT-TTAATAT
*
104951075 TATTGTTAT
1 TATTTTTAT
104951084 TTTATAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (27 bp):
TATTTTTATATATATTATTTTTAATAT
Found at i:104951135 original size:15 final size:15
Alignment explanation
Indices: 104951115--104951209 Score: 65
Period size: 15 Copynumber: 6.3 Consensus size: 15
104951105 GCATTCTTAT
104951115 TTATA-TATTATATTA
1 TTATATTATTATA-TA
104951130 TTATATTATT-TAT-
1 TTATATTATTATATA
104951143 TTATATATACTTATATA
1 TTATAT-TA-TTATATA
104951160 CTT-TCA-TATTATATA
1 -TTAT-ATTATTATATA
*
104951175 TTATAATTATTTTATA
1 TTAT-ATTATTATATA
* * *
104951191 TTATGTCATTTTATA
1 TTATATTATTATATA
104951206 TTAT
1 TTAT
104951210 TACGTTTTTA
Statistics
Matches: 67, Mismatches: 4, Indels: 18
0.75 0.04 0.20
Matches are distributed among these distances:
13 6 0.09
14 5 0.07
15 31 0.46
16 21 0.31
17 1 0.01
18 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (15 bp):
TTATATTATTATATA
Found at i:104951171 original size:25 final size:23
Alignment explanation
Indices: 104951118--104951210 Score: 79
Period size: 23 Copynumber: 4.0 Consensus size: 23
104951108 TTCTTATTTA
104951118 TATATTATAT-TATTATATTATT
1 TATATTATATATATTATATTATT
104951140 TAT-TTATATATACTTATA-TACTT
1 TATATTATATATA-TTATATTA-TT
104951163 TCATA-T-TATATATTATAATTATTT
1 T-ATATTATATATATTAT-ATTA-TT
* *
104951187 TATATTATGTCATTTTATATTATT
1 TATATTATAT-ATATTATATTATT
104951211 ACGTTTTTAT
Statistics
Matches: 58, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
21 6 0.10
22 11 0.19
23 18 0.31
24 11 0.19
25 6 0.10
26 6 0.10
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (23 bp):
TATATTATATATATTATATTATT
Found at i:104951590 original size:20 final size:19
Alignment explanation
Indices: 104951551--104951592 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
104951541 ATATATTGCA
* *
104951551 TATTAAATACTATTTTTAT
1 TATTAAATACCATGTTTAT
104951570 TATTAAATACCATAGTTTAT
1 TATTAAATACCAT-GTTTAT
104951590 TAT
1 TAT
104951593 ACGAATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (19 bp):
TATTAAATACCATGTTTAT
Found at i:104953099 original size:3 final size:3
Alignment explanation
Indices: 104953082--104953153 Score: 63
Period size: 3 Copynumber: 24.0 Consensus size: 3
104953072 CAAAACACAA
* * * * * *
104953082 AAT AAT AAC ATT AAT AAT AAT AAT AAT AAT AAT AAT GAT GAT GAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
104953130 GAT AAG AAT AAT ATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT
104953154 GTGGTCACAA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:104957963 original size:20 final size:20
Alignment explanation
Indices: 104957938--104957987 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
104957928 AGTCCTCAAG
*
104957938 GTATCGGTAGCACTTTGGTT
1 GTATCGGTAGCACTTTAGTT
*
104957958 GTATCGGTAACACTTTAGTT
1 GTATCGGTAGCACTTTAGTT
104957978 GTATCGGTAG
1 GTATCGGTAG
104957988 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.20, C:0.14, G:0.28, T:0.38
Consensus pattern (20 bp):
GTATCGGTAGCACTTTAGTT
Found at i:104958970 original size:10 final size:10
Alignment explanation
Indices: 104958953--104958982 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
104958943 GAAACTGTTG
104958953 TATATTGTAT
1 TATATTGTAT
*
104958963 TGTATTGTAT
1 TATATTGTAT
104958973 TATATTGTAT
1 TATATTGTAT
104958983 GCATCTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (10 bp):
TATATTGTAT
Found at i:104960731 original size:15 final size:15
Alignment explanation
Indices: 104960711--104960766 Score: 76
Period size: 17 Copynumber: 3.5 Consensus size: 15
104960701 TTTCATACTA
104960711 TTTTTATTTTTTTTT
1 TTTTTATTTTTTTTT
104960726 TTTTTATTTATTTTTT
1 TTTTTATTT-TTTTTT
104960742 TTTTTAATGTTTTTTTT
1 TTTTT-AT-TTTTTTTT
104960759 TTCTTTAT
1 TT-TTTAT
104960767 ATGCTTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.24
16 11 0.30
17 12 0.32
18 5 0.14
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.86
Consensus pattern (15 bp):
TTTTTATTTTTTTTT
Found at i:104960774 original size:17 final size:16
Alignment explanation
Indices: 104960711--104960797 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 16
104960701 TTTCATACTA
* *
104960711 TTTTTATTTT-TTTTT
1 TTTTTATTTTATATCT
104960726 TTTTTA-TTTAT-T-T
1 TTTTTATTTTATATCT
* * *
104960739 TTTTT-TTTAATGTTT
1 TTTTTATTTTATATCT
*
104960754 TTTTTTTCTTTATATGCT
1 TTTTTAT-TTTATAT-CT
104960772 TTTTTATTTTATATCT
1 TTTTTATTTTATATCT
*
104960788 TTTTAATTTT
1 TTTTTATTTT
104960798 TAGTACTAGT
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
13 10 0.17
14 5 0.08
15 13 0.22
16 12 0.20
17 12 0.20
18 7 0.12
ACGTcount: A:0.14, C:0.03, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTATTTTATATCT
Found at i:104960774 original size:19 final size:17
Alignment explanation
Indices: 104960718--104960781 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
104960708 CTATTTTTAT
* *
104960718 TTTTTTTTTTTTTAT-T
1 TTTTTTTTTTTTAATGC
*
104960734 TATTTTTTTTTTTAATGT
1 T-TTTTTTTTTTTAATGC
104960752 TTTTTTTTTCTTTATATGC
1 TTTTTTTTT-TTTA-ATGC
104960771 TTTTTTATTTT
1 TTTTTT-TTTT
104960782 ATATCTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.02
17 21 0.51
18 6 0.15
19 10 0.24
20 3 0.07
ACGTcount: A:0.11, C:0.03, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTTTTTTTTTTAATGC
Found at i:104960775 original size:30 final size:30
Alignment explanation
Indices: 104960721--104960777 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
104960711 TTTTTATTTT
* **
104960721 TTTTTTTTTTATTTATTTTTTTTTTTAATG
1 TTTTTTTTTTATTTATATGCTTTTTTAATG
*
104960751 TTTTTTTTTTCTTTATATGCTTTTTTA
1 TTTTTTTTTTATTTATATGCTTTTTTA
104960778 TTTTATATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.81
Consensus pattern (30 bp):
TTTTTTTTTTATTTATATGCTTTTTTAATG
Found at i:104960790 original size:15 final size:18
Alignment explanation
Indices: 104960762--104960797 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
104960752 TTTTTTTTTC
104960762 TTTATATGCTTTTTT-AT
1 TTTATATGCTTTTTTAAT
104960779 TTTATAT-C-TTTTTAAT
1 TTTATATGCTTTTTTAAT
104960795 TTT
1 TTT
104960798 TAGTACTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.28
16 6 0.33
17 7 0.39
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.72
Consensus pattern (18 bp):
TTTATATGCTTTTTTAAT
Found at i:104960907 original size:23 final size:22
Alignment explanation
Indices: 104960871--104960988 Score: 69
Period size: 23 Copynumber: 5.0 Consensus size: 22
104960861 TTATCATTTC
** *
104960871 TTATTATTCGTATTGTTTTTTA
1 TTATTATTTATATTTTTTTTTA
*
104960893 TATATTATTTATATTTTTATTTTG
1 T-TATTATTTATATTTTT-TTTTA
104960917 TTATATATTT-T-TTTTTTATTTA
1 TTAT-TATTTATATTTTTT-TTTA
104960939 TGTATTATTTTTATATTTTTTATTTA
1 T-TATTA--TTTATATTTTTT-TTTA
* * *
104960965 TAATCTATATTATGTATTTTTTTA
1 TTAT-TAT-TTATATTTTTTTTTA
104960989 ATCACTATTA
Statistics
Matches: 77, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
21 1 0.01
22 12 0.16
23 20 0.26
24 18 0.23
25 12 0.16
26 14 0.18
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (22 bp):
TTATTATTTATATTTTTTTTTA
Found at i:104960963 original size:15 final size:15
Alignment explanation
Indices: 104960709--104960963 Score: 57
Period size: 16 Copynumber: 16.3 Consensus size: 15
104960699 TTTTTCATAC
*
104960709 TATTTTTATTTTTTT
1 TATTTTTATATTTTT
*
104960724 TTTTTTTATTTATTTTT
1 TATTTTTA--TATTTTT
*
104960741 T-TTTTTAATGTTTTTT
1 TATTTTT-AT-ATTTTT
*
104960757 TTTTCTTTATATGCTTTT
1 TATT-TTTATAT--TTTT
104960775 T-TATTTTATATCTTTT
1 TAT-TTTTATAT-TTTT
* **
104960791 TAATTTTTAGTA-CTAG
1 T-ATTTTTA-TATTTTT
104960807 TATTGTTT-TACTTGTTT
1 TATT-TTTATA-TT-TTT
*
104960824 TATTTTTACATTACTTT
1 TATTTTTATATT--TTT
*
104960841 T-TTGTTTATTTTTTT
1 TATT-TTTATATTTTT
* *
104960856 TTTTTTTATCATTTCT
1 TATTTTTAT-ATTTTT
** *
104960872 TATTATTCGTATTGTT
1 TATT-TTTATATTTTT
*
104960888 T-TTTATATATTATTT
1 TATTTTTATATT-TTT
*
104960903 ATATTTTTAT-TTTGT
1 -TATTTTTATATTTTT
104960918 TA----TATATTTTT
1 TATTTTTATATTTTT
* * *
104960929 T-TTTTATTTATGTAT
1 TATTTT-TATATTTTT
104960944 TATTTTTATATTTTT
1 TATTTTTATATTTTT
104960959 TATTT
1 TATTT
104960964 ATAATCTATA
Statistics
Matches: 174, Mismatches: 34, Indels: 64
0.64 0.12 0.24
Matches are distributed among these distances:
10 3 0.02
11 5 0.03
14 9 0.05
15 44 0.25
16 51 0.29
17 50 0.29
18 12 0.07
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.74
Consensus pattern (15 bp):
TATTTTTATATTTTT
Found at i:104960965 original size:19 final size:18
Alignment explanation
Indices: 104960711--104960965 Score: 66
Period size: 19 Copynumber: 13.6 Consensus size: 18
104960701 TTTCATACTA
104960711 TTTTTA-TT-TTTTTT-T
1 TTTTTATTTATTTTTTAT
104960726 TTTTTATTTATTTTTT-T
1 TTTTTATTTATTTTTTAT
*
104960743 TTTTAATGTT-TTTTTT-T
1 TTTTTAT-TTATTTTTTAT
* **
104960760 TCTTTATATGCTTTTTTA-
1 TTTTTAT-TTATTTTTTAT
* * *
104960778 -TTTTATATCTTTTTAAT
1 TTTTTATTTATTTTTTAT
*
104960795 TTTTAGTACTAGTATTGTTTTACT
1 TTTT--TA-T-TTATT-TTTTA-T
**
104960819 TGTTTTATTT-TTACATTACT
1 T-TTTTATTTATT-TTTTA-T
*
104960839 TTTTTGTTTATTTTTT-T
1 TTTTTATTTATTTTTTAT
*
104960856 TTTTT-TTATCATTTCTTAT
1 TTTTTATT-T-ATTTTTTAT
* *
104960875 TATTCGTA-TTGTTTTTTAT
1 T-TT-TTATTTATTTTTTAT
* *
104960894 ATATTATTTATATTTTTAT
1 TTTTTATTTAT-TTTTTAT
* *
104960913 TTTGTTATATATTTTTTTT
1 TTT-TTATTTATTTTTTAT
104960932 TTATTTATGTATTATTTTTATAT
1 TT-TTTA--T-TTATTTTT-TAT
104960955 TTTTTATTTAT
1 TTTTTATTTAT
104960966 AATCTATATT
Statistics
Matches: 178, Mismatches: 33, Indels: 54
0.67 0.12 0.20
Matches are distributed among these distances:
15 6 0.03
16 11 0.06
17 40 0.22
18 21 0.12
19 41 0.23
20 24 0.13
21 5 0.03
22 15 0.08
23 10 0.06
24 2 0.01
25 3 0.02
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.74
Consensus pattern (18 bp):
TTTTTATTTATTTTTTAT
Found at i:104960975 original size:28 final size:31
Alignment explanation
Indices: 104960920--104960988 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 31
104960910 TATTTTGTTA
* * * *
104960920 TATATTTTTTTTTTATTTATGTATTATT-TT
1 TATATTTTTTATTTATTAATCTATTATTATG
104960950 TATATTTTTTATTTA-TAATCTA-TATTATG
1 TATATTTTTTATTTATTAATCTATTATTATG
104960979 TAT-TTTTTTA
1 TATATTTTTTA
104960989 ATCACTATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
28 11 0.32
29 9 0.26
30 14 0.41
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (31 bp):
TATATTTTTTATTTATTAATCTATTATTATG
Found at i:104960986 original size:29 final size:26
Alignment explanation
Indices: 104960926--104960987 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
104960916 GTTATATATT
*
104960926 TTTTTTTTATTTATGTATTATTTTTA
1 TTTTTTTTATTTATGAATTATTTTTA
*
104960952 TATTTTTTATTTAT-AATCTATATTATGTA
1 TTTTTTTTATTTATGAAT-TAT-TT-T-TA
104960981 TTTTTTT
1 TTTTTTT
104960988 AATCACTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.07
26 16 0.55
27 2 0.07
28 1 0.03
29 8 0.28
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.73
Consensus pattern (26 bp):
TTTTTTTTATTTATGAATTATTTTTA
Found at i:104961035 original size:23 final size:21
Alignment explanation
Indices: 104960970--104961055 Score: 84
Period size: 23 Copynumber: 3.9 Consensus size: 21
104960960 ATTTATAATC
104960970 TATATTATGTATTT-TTTTAA
1 TATATTATGTATTTATTTTAA
**
104960990 TCACTATTATGTACATACTTTTAA
1 T-A-TATTATGTATTTA-TTTTAA
104961014 TATTATTATGTATTTATGTTTAA
1 TA-TATTATGTATTTAT-TTTAA
*
104961037 TATATATATGTATATATTT
1 TATAT-TATGTATTTATTT
104961056 ATGTAGTATT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 16 0.30
23 29 0.54
24 7 0.13
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.57
Consensus pattern (21 bp):
TATATTATGTATTTATTTTAA
Found at i:104961173 original size:29 final size:28
Alignment explanation
Indices: 104961123--104961177 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
104961113 TTATACTGTA
* *
104961123 TTATTTATATATTTTTTCTTACATATTTC
1 TTATGTATATATTATTTCTTAC-TATTTC
104961152 TTATGTATATATATATTT-TTACTATT
1 TTATGTATATAT-TATTTCTTACTATT
104961178 ATATGTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 4 0.17
29 15 0.65
30 4 0.17
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (28 bp):
TTATGTATATATTATTTCTTACTATTTC
Found at i:104961271 original size:20 final size:21
Alignment explanation
Indices: 104961248--104961287 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
104961238 TATTCTTATT
104961248 ATTACGTATATATTT-TATAC
1 ATTACGTATATATTTATATAC
104961268 ATTACGTATATATTTATATA
1 ATTACGTATATATTTATATA
104961288 TCGTTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (21 bp):
ATTACGTATATATTTATATAC
Found at i:104976823 original size:77 final size:77
Alignment explanation
Indices: 104976719--104977678 Score: 483
Period size: 75 Copynumber: 11.9 Consensus size: 77
104976709 ATGTTTTAAT
* * * *
104976719 TTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACATGCCAA
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
104976782 GGTATTTTCAAA
66 GGTATTTTCAAA
* * * * *
104976794 TTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACAAGTCGA
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
*
104976859 GGTATTTTCAAT
66 GGTATTTTCAAA
104976871 TTCTGTTTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TTC------T--A--T-T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* *
104976936 GTCACATGCTGAGGTATTTTC-AA
54 GTCACACGCCGAGGTATTTTCAAA
* * * * * *
104976959 TTCCTGTTTTT--TAAAAGTCAACTCGTATTGCGAGAAGTGAGTT-AGCCTCAGGTCACACACCG
1 TT-CTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCG
*
104977021 AGGTATTTTTAATTTCTA
65 AGGTATTTTCAA-----A
* * *
104977039 TTTTCCAATTTATATTTCAAAAAAAATCAACTCATTTTGCGATAGGTGAGTTGAGCCTCAGGTCA
1 --TT-C----TATTTTTCAA-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* * *
104977104 CACACTGAGGTATCTTC-AA
58 CACGCCGAGGTATTTTCAAA
* * * *
104977123 TTCCTGCTTTTT---AAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
1 TT-CT-ATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCC
*
104977185 GAGGTATTTTCAAT
64 GAGGTATTTTCAAA
* * * ** * * * *
104977199 TTTTGTTTTTCAAAAATATCAACTCATATTGCGAGAAATGAGTTTAGTCTCAGGTCACACGCTGT
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
104977264 GGTATTTTC-AA
66 GGTATTTTCAAA
** * * * * *
104977275 TTCT-TGTTTT-TTAAAAGTCAACTCGTATTGCAAAAGGTGAGTTGAGCCTCAGG--ACACGCTG
1 TTCTAT-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCG
*
104977336 AGGTATTTTCAAT
65 AGGTATTTTCAAA
* * * * * * *
104977349 TTCTGTTTTTTCAATTTATGTCTTTTAAAA--AAATCA-ACT-C-ATATTGCGAGAGGTGAG-TT
1 TTCT-ATTTTTCAA---A--------AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCT
* * * * *
104977408 AAGCCTCAGGACACGCTGAGGTATTTTTAAT
51 CAG-GTC---ACACGCCGAGGTATTTTCAAA
* * * * *
104977439 TTCTGTTTTTC--AAAAATTAACTCATACTGCGAGAGGTGAGTTGAGCCTC-GGATCACATGCTG
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCG
104977501 AGGTATTTTCAAA
65 AGGTATTTTCAAA
* * *
104977514 TTCTATTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGG
1 TTCTATTTTTCA---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* **
104977579 TCACACGCTGAGGTATTTTCTATT
55 TCACACGCCGAGGTATTTTC-AAA
** * * **
104977603 TTCGCTTCTTATATAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATAC
1 TTCTATT-TT-T-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGC
*
104977668 TGAGGTATTTT
63 CGAGGTATTTT
104977679 TAGTTTTTTA
Statistics
Matches: 687, Mismatches: 112, Indels: 166
0.71 0.12 0.17
Matches are distributed among these distances:
73 17 0.02
74 35 0.05
75 158 0.23
76 16 0.02
77 114 0.17
78 18 0.03
79 11 0.02
80 2 0.00
81 57 0.08
82 10 0.01
83 3 0.00
84 8 0.01
85 13 0.02
86 5 0.01
87 4 0.01
88 58 0.08
89 104 0.15
90 52 0.08
91 1 0.00
92 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (77 bp):
TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
GGTATTTTCAAA
Found at i:104976882 original size:14 final size:14
Alignment explanation
Indices: 104976863--104976892 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
104976853 AGTCGAGGTA
104976863 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
104976877 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
104976891 TT
1 TT
104976893 CAAAAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:104976950 original size:89 final size:89
Alignment explanation
Indices: 104976801--104976969 Score: 277
Period size: 89 Copynumber: 1.9 Consensus size: 89
104976791 AAATTCTATT
* *
104976801 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACAAGTCGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACAAGTCGAGGTATTT
*
104976866 TCAATTTCTGTTTTTCAATTTCTG
66 TCAATTCCTGTTTTTCAATTTCTG
* *
104976890 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATG-CTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACAAGTC-GAGGTATT
104976954 TTCAATTCCTGTTTTT
65 TTCAATTCCTGTTTTT
104976970 TAAAAGTCAA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
88 1 0.01
89 73 0.99
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (89 bp):
TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACAAGTCGAGGTATTT
TCAATTCCTGTTTTTCAATTTCTG
Found at i:104977095 original size:164 final size:163
Alignment explanation
Indices: 104976730--104977678 Score: 1002
Period size: 163 Copynumber: 5.8 Consensus size: 163
104976720 TCTATTTTTC
* * * **
104976730 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACATGCCAAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTC-AAT
* * * * * *
104976795 T-CTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACA-AGTCG
65 TCCTGTTTTT--TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACA-CCG
* *
104976858 AGGTATTTTCAATTTCTGTTTTTCAATTTCTGTTTCAA
127 AGGTATTTTCAATTTCT-ATTTTCAATTTATGTTTCAA
*
104976896 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
* * *
104976961 CCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAAGTGAGTT-AGCCTCAGGTCACACACCGAGGT
66 CCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGT
* *
104977025 ATTTTTAATTTCTATTTTCCAATTTATATTTCAAA
131 ATTTTCAATTTCTATTTT-CAATTTATGTTTC-AA
* * * *
104977060 AAAAATCAACTCATTTTGCGATAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATCTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
* * * * *
104977125 CCTGCTTTTTAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGT
66 CCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGT
*
104977190 ATTTTC-A-----ATTTT---TGT-T-TTTCAA
131 ATTTTCAATTTCTATTTTCAATTTATGTTTCAA
* ** * * *
104977212 AAATATCAACTCATATTGCGAGAAATGAGTTTAGTCTCAGGTCACACGCTGTGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
* * * * * * *
104977277 CTTGTTTTTTAAAAGTCAACTCGTATTGCAAAAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGT
66 CCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGT
* *
104977340 ATTTTCAATTTCTGTTTTTTCAATTTATGTCTTTTAA
131 ATTTTCAATTTC--TATTTTCAATTTATG--TTTCAA
* *
104977377 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG--ACACGCTGAGGTATTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
* * * * ** *
104977440 TCTGTTTTTCAAAAATTAACTCATACTGCGAGAGGTGAGTTGAGCCTC-GGATCACATGCTGAGG
66 CCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACACCGAGG
* * ***
104977504 TATTTTCAAATTCTATTTTTAATTTATGTTTTTC
130 TATTTTCAATTTCTATTTTCAATTTATGTTTCAA
* * *
104977538 AAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTCTATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTC-A-A
* * *
104977603 TTCGCT-TCTTATATAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATA
64 TTC-CTGT-TT-T-T-TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACA
*
104977667 CTGAGGTATTTT
124 CCGAGGTATTTT
104977679 TAGTTTTTTA
Statistics
Matches: 670, Mismatches: 80, Indels: 63
0.82 0.10 0.08
Matches are distributed among these distances:
150 17 0.03
151 1 0.00
152 103 0.15
153 4 0.01
154 1 0.00
155 2 0.00
158 4 0.01
159 5 0.01
161 44 0.07
162 7 0.01
163 130 0.19
164 130 0.19
165 97 0.14
166 68 0.10
167 1 0.00
168 1 0.00
169 53 0.08
170 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (163 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
CCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGT
ATTTTCAATTTCTATTTTCAATTTATGTTTCAA
Found at i:104977317 original size:152 final size:151
Alignment explanation
Indices: 104977053--104977358 Score: 434
Period size: 152 Copynumber: 2.0 Consensus size: 151
104977043 CCAATTTATA
* * **
104977053 TTTCAAAAAAAATCAACTCATTTTGCGATAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATC
1 TTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACACTGAGGTATC
* *
104977118 TTCAATTCCTGCTTTTTAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
66 TTCAATTCCTGCTTTTTAAAAGTCAACTCGTATTGCAAAAGGCGAGTTGAGCCTCAGG--ACACG
*
104977183 CCGAGGTATTTTCAATTTTTGTT
129 CCGAGGTATTTTCAATTTCTGTT
* * * * * *
104977206 TTTC-AAAAATATCAACTCATATTGCGAGAAATGAGTTTAGTCTCAGGTCACACGCTGTGGTATT
1 TTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACACTGAGGTATC
* * * *
104977270 TTCAATTCTTGTTTTTTAAAAGTCAACTCGTATTGCAAAAGGTGAGTTGAGCCTCAGGACACGCT
66 TTCAATTCCTGCTTTTTAAAAGTCAACTCGTATTGCAAAAGGCGAGTTGAGCCTCAGGACACGCC
104977335 GAGGTATTTTCAATTTCTGTT
131 GAGGTATTTTCAATTTCTGTT
104977356 TTT
1 TTT
104977359 TCAATTTATG
Statistics
Matches: 136, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
150 29 0.21
152 103 0.76
153 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (151 bp):
TTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACACTGAGGTATC
TTCAATTCCTGCTTTTTAAAAGTCAACTCGTATTGCAAAAGGCGAGTTGAGCCTCAGGACACGCC
GAGGTATTTTCAATTTCTGTT
Found at i:104977374 original size:15 final size:15
Alignment explanation
Indices: 104977341--104977374 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
104977331 CGCTGAGGTA
* *
104977341 TTTTCAATTTCTGTT
1 TTTTCAATTTATGTC
104977356 TTTTCAATTTATGTC
1 TTTTCAATTTATGTC
104977371 TTTT
1 TTTT
104977375 AAAAAAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTCAATTTATGTC
Found at i:104977486 original size:73 final size:74
Alignment explanation
Indices: 104977377--104977523 Score: 208
Period size: 73 Copynumber: 2.0 Consensus size: 74
104977367 TGTCTTTTAA
* * *
104977377 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGA-CAC-GCTGAGGTATTTTTAATT
1 AAAAATCAACTCATACTGCGAGAGGTGAGTTAAGCCTC-GGATCACAGCTGAGGTATTTTCAAAT
*
104977440 TCTGTTTTTC
65 TCTATTTTTC
* *
104977450 AAAAATTAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCTGAGGTATTTTCAAAT
1 AAAAATCAACTCATACTGCGAGAGGTGAGTTAAGCCTCGGATCACA-GCTGAGGTATTTTCAAAT
104977515 TCTATTTTT
65 TCTATTTTT
104977524 AATTTATGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
72 3 0.05
73 38 0.58
75 24 0.37
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
AAAAATCAACTCATACTGCGAGAGGTGAGTTAAGCCTCGGATCACAGCTGAGGTATTTTCAAATT
CTATTTTTC
Found at i:104977534 original size:88 final size:88
Alignment explanation
Indices: 104977429--104977598 Score: 286
Period size: 88 Copynumber: 1.9 Consensus size: 88
104977419 CACGCTGAGG
* *
104977429 TATTTTTAATTTCTGTTTTTCAAAAATTAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCA
1 TATTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCA
*
104977494 CATGCTGAGGTATTTTCAAATTC
66 CACGCTGAGGTATTTTCAAATTC
* * *
104977517 TATTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGGTCA
1 TATTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCA
104977582 CACGCTGAGGTATTTTC
66 CACGCTGAGGTATTTTC
104977599 TATTTTCGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (88 bp):
TATTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCA
CACGCTGAGGTATTTTCAAATTC
Found at i:104977870 original size:44 final size:45
Alignment explanation
Indices: 104977788--104977882 Score: 156
Period size: 44 Copynumber: 2.1 Consensus size: 45
104977778 GAATAAAGGT
*
104977788 TGGAGCTGATCGAAGACACCAGATTTTTCCTCCCTGAAGTTGCAG
1 TGGAGCTGATCGAAGACACCAGATTTTGCCTCCCTGAAGTTGCAG
* *
104977833 TGGAGCTGATCGAAGATA-CATATTTTGCCTCCCTGAAGTTGCAG
1 TGGAGCTGATCGAAGACACCAGATTTTGCCTCCCTGAAGTTGCAG
104977877 TGGAGC
1 TGGAGC
104977883 AGGTTGAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 30 0.64
45 17 0.36
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (45 bp):
TGGAGCTGATCGAAGACACCAGATTTTGCCTCCCTGAAGTTGCAG
Found at i:104977912 original size:44 final size:44
Alignment explanation
Indices: 104977820--104977975 Score: 147
Period size: 44 Copynumber: 3.5 Consensus size: 44
104977810 ATTTTTCCTC
* * * *
104977820 CCTGAAGTTGCAGTGGAGCTGATCGAAGATACATATTTTGC--CTC
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGATACA-AGTTT-CATCTT
* *
104977864 CCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTTTCATCTT
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTTTCATCTT
* * * *
104977908 CCTGAAGTTGTAGCGGAGCAGATTGAAGATACCAGATCTCATC-T
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAG-TTTCATCTT
**
104977952 CTCTGAAGTTGCAGAAGAGCAGAT
1 C-CTGAAGTTGCAGTGGAGCAGAT
104977976 CACAACAAAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 63 0.68
45 25 0.27
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTTTCATCTT
Found at i:104979591 original size:15 final size:14
Alignment explanation
Indices: 104979564--104979606 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
104979554 ATATTATTCA
104979564 TGTTATA-TATTAT
1 TGTTATACTATTAT
104979577 TGTTATCACTATTAT
1 TGTTAT-ACTATTAT
* *
104979592 TTTTATATTATTAT
1 TGTTATACTATTAT
104979606 T
1 T
104979607 ATATTATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 6 0.23
14 9 0.35
15 11 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (14 bp):
TGTTATACTATTAT
Found at i:104979602 original size:11 final size:11
Alignment explanation
Indices: 104979586--104979628 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
104979576 TTGTTATCAC
104979586 TATTATTTTTA
1 TATTATTTTTA
*
104979597 TATTATTATTA
1 TATTATTTTTA
*
104979608 TATTATATTTA
1 TATTATTTTTA
104979619 -ATTATATTTT
1 TATTAT-TTTT
104979629 TTAAATGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 5 0.19
11 22 0.81
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:104979836 original size:25 final size:25
Alignment explanation
Indices: 104979789--104980010 Score: 200
Period size: 23 Copynumber: 9.2 Consensus size: 25
104979779 TATTATTATC
*
104979789 ATTTCTAATA-TATA-TATCGTATAT
1 ATTTTTAATACTATATTAT-GTATAT
*
104979813 GTTTTT-ATA-TATATTATGTATAT
1 ATTTTTAATACTATATTATGTATAT
104979836 ATTTTTAATA-T-TATTA-GTTATAT
1 ATTTTTAATACTATATTATG-TATAT
*
104979859 ATTTTTTATACTAT-TTCATGTATAT
1 ATTTTTAATACTATATT-ATGTATAT
* *
104979884 ATTTTT-ATATTATCTTATGTATAT
1 ATTTTTAATACTATATTATGTATAT
*
104979908 ATTTTTTTAATAACTATATTATGTATGT
1 A--TTTTTAAT-ACTATATTATGTATAT
* *
104979936 ATTTTTAACACTATATTATGTACAT
1 ATTTTTAATACTATATTATGTATAT
* *
104979961 ACTTTTAATA-T-TATTATGTATTT
1 ATTTTTAATACTATATTATGTATAT
*
104979984 ATCTTTAATA-TATA-TATGTATAT
1 ATTTTTAATACTATATTATGTATAT
104980007 ATTT
1 ATTT
104980011 ATGTAGTATT
Statistics
Matches: 166, Mismatches: 19, Indels: 27
0.78 0.09 0.13
Matches are distributed among these distances:
22 1 0.01
23 67 0.40
24 32 0.19
25 37 0.22
26 13 0.08
27 2 0.01
28 14 0.08
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (25 bp):
ATTTTTAATACTATATTATGTATAT
Found at i:104980021 original size:48 final size:45
Alignment explanation
Indices: 104979789--104980024 Score: 172
Period size: 48 Copynumber: 4.8 Consensus size: 45
104979779 TATTATTATC
* *
104979789 ATTTCTAATATATATATCGTATATGTTTTTATATATATTATGTATAT
1 ATTTTTAATATATATAT-GTATATATTTTTATAT-TATTATGTATAT
*
104979836 ATTTTTAATAT-TAT-TAGTTATATATTTTTTATACTATTTCATGTATAT
1 ATTTTTAATATATATAT-G-TATATA-TTTTTATATTA-TT-ATGTATAT
* *
104979884 ATTTTT-ATATTATCTTATGTATATATTTTTTTAATAACTATATTATGTATGT
1 ATTTTTAATA-TAT-ATATGTATATA--TTTTT-AT-A-T-TATTATGTATAT
* * * *
104979936 ATTTTTAACACTATATTATGTACATACTTTTAATATTATTATGTATTT
1 ATTTTTAATA-TATA-TATGTATATA-TTTTTATATTATTATGTATAT
*
104979984 ATCTTTAATATATATATGTATATATTTATGTAGTATTATTA
1 ATTTTTAATATATATATGTATATATTT-T-TA-TATTATTA
104980025 ATAGTCGTTT
Statistics
Matches: 153, Mismatches: 18, Indels: 35
0.74 0.09 0.17
Matches are distributed among these distances:
45 5 0.03
46 20 0.13
47 28 0.18
48 42 0.27
49 8 0.05
50 9 0.06
51 5 0.03
52 18 0.12
53 16 0.10
54 2 0.01
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.57
Consensus pattern (45 bp):
ATTTTTAATATATATATGTATATATTTTTATATTATTATGTATAT
Found at i:104980188 original size:25 final size:25
Alignment explanation
Indices: 104980124--104980188 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
104980114 ATATATATAT
* *
104980124 ATATTTTTTA-ACTATATTATGTAT
1 ATATTTTTAAGACTATATTATGTAC
*
104980148 GTATTTTTAACG-CTATATTATGTAC
1 ATATTTTTAA-GACTATATTATGTAC
104980173 ATATTTTTAAGACTAT
1 ATATTTTTAAGACTAT
104980189 GTATATACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
24 9 0.26
25 25 0.74
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (25 bp):
ATATTTTTAAGACTATATTATGTAC
Found at i:104988761 original size:14 final size:14
Alignment explanation
Indices: 104988733--104988780 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
104988723 TGATGTGAAT
104988733 AATA-AAATATATAA
1 AATATAAATAT-TAA
104988747 AATATAAATATTAA
1 AATATAAATATTAA
*
104988761 AATATCAAAATATTAG
1 AATAT--AAATATTAA
104988777 AATA
1 AATA
104988781 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 12 0.40
15 6 0.20
16 12 0.40
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (14 bp):
AATATAAATATTAA
Found at i:104988761 original size:23 final size:22
Alignment explanation
Indices: 104988730--104988784 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
104988720 TAATGATGTG
*
104988730 AATAATAAAATATATAAAATATA
1 AATAATAAAATAT-CAAAATATA
*
104988753 AATATTAAAATATCAAAATATTA
1 AATAATAAAATATCAAAATA-TA
104988776 GAATAATAA
1 -AATAATAA
104988785 TAATTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.22
23 14 0.52
24 7 0.26
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
AATAATAAAATATCAAAATATA
Found at i:104988765 original size:8 final size:8
Alignment explanation
Indices: 104988730--104988780 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
104988720 TAATGATGTG
*
104988730 AATAATAA
1 AATATTAA
104988738 AATATATAA
1 AATAT-TAA
104988747 AATA-T-A
1 AATATTAA
104988753 AATATTAA
1 AATATTAA
*
104988761 AATATCAA
1 AATATTAA
*
104988769 AATATTAG
1 AATATTAA
104988777 AATA
1 AATA
104988781 ATAATAATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
6 5 0.14
7 2 0.06
8 22 0.61
9 7 0.19
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:104988771 original size:16 final size:15
Alignment explanation
Indices: 104988734--104988780 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
104988724 GATGTGAATA
104988734 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
104988750 AT-AAATATTAAAAT
1 ATAAAATATTAAAAT
*
104988764 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
104988780 A
1 A
104988781 ATAATAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 8 0.29
15 6 0.21
16 14 0.50
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:104988950 original size:22 final size:22
Alignment explanation
Indices: 104988913--104988996 Score: 71
Period size: 22 Copynumber: 3.7 Consensus size: 22
104988903 CATATATAAA
* *
104988913 AAAATAAATACGTAATAATATT
1 AAAATATATACATAATAATATT
* *
104988935 AAAATATGTACATAATATAGTGTT
1 AAAATATATACATAATA-A-TATT
*
104988959 AAAAATACATACATAAT-ATAGTT
1 -AAAATATATACATAATAATA-TT
*
104988982 AAGATATATACATAA
1 AAAATATATACATAA
104988997 GATAACATGT
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
22 28 0.57
23 4 0.08
24 3 0.06
25 14 0.29
ACGTcount: A:0.55, C:0.06, G:0.07, T:0.32
Consensus pattern (22 bp):
AAAATATATACATAATAATATT
Found at i:104989059 original size:25 final size:25
Alignment explanation
Indices: 104989023--104989154 Score: 91
Period size: 25 Copynumber: 5.6 Consensus size: 25
104989013 AAAAAAATAT
*
104989023 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * * *
104989048 ATATATACATAAAATAGTATAAAAT
1 ATATATACATAATATAATATTAAAG
* *
104989073 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATATTAAAG
* *
104989097 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
* *
104989119 A-ATATATATAATACAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
104989142 AAATATA-ATAATA
1 ATATATACATAATA
104989155 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
21 4 0.05
22 11 0.13
23 24 0.29
24 7 0.08
25 38 0.45
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.34
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:104989078 original size:27 final size:27
Alignment explanation
Indices: 104989016--104989079 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 27
104989006 TAGAAAAAAA
*
104989016 AAAATATATATATAAATAATATAATAT
1 AAAATATATATATAAATAAAATAATAT
* * * *
104989043 -TAA-AGATATATACATAAAATAGTAT
1 AAAATATATATATAAATAAAATAATAT
104989068 AAAATATATATA
1 AAAATATATATA
104989080 CGTAATATAG
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
25 18 0.64
26 4 0.14
27 6 0.21
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (27 bp):
AAAATATATATATAAATAAAATAATAT
Found at i:104989762 original size:30 final size:30
Alignment explanation
Indices: 104989642--104989786 Score: 186
Period size: 30 Copynumber: 4.8 Consensus size: 30
104989632 TAGGTACAAG
* *
104989642 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
104989672 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
104989702 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
104989732 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
104989762 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
104989787 TGAGAAAAGT
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
29 2 0.02
30 101 0.98
ACGTcount: A:0.20, C:0.04, G:0.48, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:104992560 original size:18 final size:18
Alignment explanation
Indices: 104992539--104992580 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
104992529 AAAATATTTA
104992539 TTTTAATGT-TTATAGTAT
1 TTTTAATGTATTATA-TAT
* *
104992557 TTTTGATGTATTATATTT
1 TTTTAATGTATTATATAT
104992575 TTTTAA
1 TTTTAA
104992581 AAAATATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (18 bp):
TTTTAATGTATTATATAT
Found at i:104994948 original size:60 final size:60
Alignment explanation
Indices: 104994866--104994989 Score: 142
Period size: 60 Copynumber: 2.1 Consensus size: 60
104994856 AATTTCAAAG
* * ** * * *
104994866 TTAGGACTAAATTGAAAGATTTTATAAATGTTGAGGGCTAAATTTATTGACTTTTTATAA
1 TTAGAACTAAAATGAAAGATTTTATAAACATTGAGAGCTAAATTTATTAAATTTTTATAA
* * *
104994926 TTAGAACTAAAATGACAA-ATTTTGTAAACATTGAGAGCTAAATTTGTTAAATTTTTATAT
1 TTAGAACTAAAATGA-AAGATTTTATAAACATTGAGAGCTAAATTTATTAAATTTTTATAA
104994986 TTAG
1 TTAG
104994990 GATCAAATTG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 51 0.96
61 2 0.04
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.41
Consensus pattern (60 bp):
TTAGAACTAAAATGAAAGATTTTATAAACATTGAGAGCTAAATTTATTAAATTTTTATAA
Found at i:104995868 original size:27 final size:27
Alignment explanation
Indices: 104995830--104995881 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
104995820 GGAATTTAGA
104995830 ATCTAATACTAATACTATAAAATATGT
1 ATCTAATACTAATACTATAAAATATGT
104995857 ATCTAATACTAATACTATAAAATAT
1 ATCTAATACTAATACTATAAAATAT
104995882 AACATATGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.37
Consensus pattern (27 bp):
ATCTAATACTAATACTATAAAATATGT
Found at i:105001436 original size:46 final size:45
Alignment explanation
Indices: 105001351--105001438 Score: 108
Period size: 46 Copynumber: 1.9 Consensus size: 45
105001341 CCTTAGTTTT
* * *
105001351 GAATAAGTTGTGCTTTAGGAACAGCTTATCGTACGAATAAGTCCC
1 GAATAAGTTGTGCTTAAGGAACAGCTTATCATACAAATAAGTCCC
105001396 GAATAAGTTGATGCTTAAGGAGA-A-CTTACTCATACAAATAAGT
1 GAATAAGTTG-TGCTTAAGGA-ACAGCTTA-TCATACAAATAAGT
105001439 TTCCATGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
45 14 0.38
46 22 0.59
47 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (45 bp):
GAATAAGTTGTGCTTAAGGAACAGCTTATCATACAAATAAGTCCC
Found at i:105006354 original size:16 final size:16
Alignment explanation
Indices: 105006321--105006354 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
105006311 TCAAACTGTT
* *
105006321 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
105006337 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
105006353 AA
1 AA
105006355 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:105009179 original size:21 final size:21
Alignment explanation
Indices: 105009153--105009193 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
105009143 AGACGAGCAA
* *
105009153 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
105009174 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
105009194 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:105011131 original size:16 final size:16
Alignment explanation
Indices: 105011098--105011131 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
105011088 GGAGATTGTT
* *
105011098 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
105011114 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
105011130 AA
1 AA
105011132 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:105013723 original size:17 final size:17
Alignment explanation
Indices: 105013701--105013733 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
105013691 AAAATTTTTA
*
105013701 TTTAAACCCTTTTAAAT
1 TTTAAACCATTTTAAAT
105013718 TTTAAACCATTTTAAA
1 TTTAAACCATTTTAAA
105013734 CCAAAACCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTAAACCATTTTAAAT
Found at i:105015268 original size:21 final size:22
Alignment explanation
Indices: 105015228--105015274 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
105015218 CTCTGCTCAA
*
105015228 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
*
105015249 ACTCCACCTGCTGTGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
105015271 ACTC
1 ACTC
105015275 ACTCCTTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:105022728 original size:32 final size:32
Alignment explanation
Indices: 105022668--105022765 Score: 151
Period size: 32 Copynumber: 3.0 Consensus size: 32
105022658 TGAATTATAA
* * *
105022668 ATTTTAGAAGGATCAAATAGCAGTTTTACCAAT
1 ATTTTAAAAGG-TCATATAGCAATTTTACCAAT
*
105022701 ATTTTAAAAGGTCATATGGCAATTTTACCAAT
1 ATTTTAAAAGGTCATATAGCAATTTTACCAAT
105022733 ATTTTAAAAGGTCATATAGCAATTTTACCAAT
1 ATTTTAAAAGGTCATATAGCAATTTTACCAAT
105022765 A
1 A
105022766 ATGAATAGTA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 50 0.83
33 10 0.17
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (32 bp):
ATTTTAAAAGGTCATATAGCAATTTTACCAAT
Found at i:105025748 original size:15 final size:16
Alignment explanation
Indices: 105025728--105025764 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
105025718 CATTTAGAAC
105025728 TTTAATTTAA-TGAAG
1 TTTAATTTAATTGAAG
105025743 TTTAATTTAATTGAAG
1 TTTAATTTAATTGAAG
105025759 TTTAAT
1 TTTAAT
105025765 GTCGCTATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (16 bp):
TTTAATTTAATTGAAG
Found at i:105026078 original size:22 final size:22
Alignment explanation
Indices: 105026050--105026094 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
105026040 GACTTAAATG
105026050 CAAAACCTAAATTAATTTTGTT
1 CAAAACCTAAATTAATTTTGTT
105026072 CAAAACCTAAATTAATTTTGTT
1 CAAAACCTAAATTAATTTTGTT
105026094 C
1 C
105026095 TTCATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (22 bp):
CAAAACCTAAATTAATTTTGTT
Found at i:105026435 original size:10 final size:10
Alignment explanation
Indices: 105026420--105026447 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
105026410 CATTTAAAAG
105026420 TTTGACTTAA
1 TTTGACTTAA
105026430 TTTGACTTAA
1 TTTGACTTAA
105026440 TTTGACTT
1 TTTGACTT
105026448 TAAATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.54
Consensus pattern (10 bp):
TTTGACTTAA
Found at i:105026905 original size:43 final size:43
Alignment explanation
Indices: 105026844--105026926 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
105026834 AACATTATTC
*
105026844 ATGAAAACTAGTAGAAGTGTTTAGGTTTTGTATATATTGAATA
1 ATGAAAACAAGTAGAAGTGTTTAGGTTTTGTATATATTGAATA
105026887 ATGAAAACAAGTAGAAGTGTTTAGGTTTTGTATATATTGA
1 ATGAAAACAAGTAGAAGTGTTTAGGTTTTGTATATATTGA
105026927 GATGTTGAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.39
Consensus pattern (43 bp):
ATGAAAACAAGTAGAAGTGTTTAGGTTTTGTATATATTGAATA
Found at i:105041279 original size:12 final size:12
Alignment explanation
Indices: 105041264--105041292 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
105041254 AAATTGAATT
105041264 TTATTAGGATTA
1 TTATTAGGATTA
105041276 TTATTAGGATTA
1 TTATTAGGATTA
105041288 TTATT
1 TTATT
105041293 TAAATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (12 bp):
TTATTAGGATTA
Found at i:105043163 original size:12 final size:12
Alignment explanation
Indices: 105043146--105043173 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
105043136 CAACCACTTG
105043146 TGTTTATTTAAT
1 TGTTTATTTAAT
105043158 TGTTTATTTAAT
1 TGTTTATTTAAT
105043170 TGTT
1 TGTT
105043174 AATTGTGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68
Consensus pattern (12 bp):
TGTTTATTTAAT
Found at i:105043772 original size:31 final size:29
Alignment explanation
Indices: 105043725--105043802 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 29
105043715 ATTTATATCA
*
105043725 AATTTG-TATAAAAATTTTGATTTAATGAAT
1 AATTTGATATATAAATTTTGATTTAATG--T
* *
105043755 AATTTGATATATAAATTTTAATTTGATGT
1 AATTTGATATATAAATTTTGATTTAATGT
*
105043784 AA-TT-ATATATAAAATTTGA
1 AATTTGATATATAAATTTTGA
105043803 ATTGTGACTC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
27 13 0.31
28 2 0.05
29 3 0.07
30 6 0.14
31 18 0.43
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (29 bp):
AATTTGATATATAAATTTTGATTTAATGT
Found at i:105043851 original size:31 final size:30
Alignment explanation
Indices: 105043761--105043855 Score: 90
Period size: 31 Copynumber: 3.2 Consensus size: 30
105043751 GAATAATTTG
* *
105043761 ATATAT-AAATTTTAA-TTTGATGTAAT-T
1 ATATATAAAATTTTAATTTTAATTTAATGT
* * *
105043788 ATATATAAAATTTGAATTGTGACTCTT-ATGT
1 ATATATAAAATTTTAATT-TTAAT-TTAATGT
105043819 ATATATAAAATTTTAATTTTAATTTAATTGT
1 ATATATAAAATTTTAATTTTAATTTAA-TGT
105043850 ATATAT
1 ATATAT
105043856 TTAAAGAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
27 6 0.11
28 8 0.15
29 3 0.06
30 8 0.15
31 28 0.53
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (30 bp):
ATATATAAAATTTTAATTTTAATTTAATGT
Found at i:105043914 original size:25 final size:25
Alignment explanation
Indices: 105043886--105043982 Score: 153
Period size: 25 Copynumber: 3.9 Consensus size: 25
105043876 ACTTATATTC
105043886 ATATTAGATTAATATAATTATTTTT
1 ATATTAGATTAATATAATTATTTTT
*
105043911 ATATTAAATTAATATAA-TA-TTTT
1 ATATTAGATTAATATAATTATTTTT
*
105043934 ATATTAGATTTAATATAATTATTTTC
1 ATATTAGA-TTAATATAATTATTTTT
105043960 ATATTAGATTAATATAATTATTT
1 ATATTAGATTAATATAATTATTT
105043983 ATGTATGAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.17
24 11 0.17
25 33 0.50
26 11 0.17
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (25 bp):
ATATTAGATTAATATAATTATTTTT
Found at i:105043952 original size:49 final size:49
Alignment explanation
Indices: 105043886--105043982 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
105043876 ACTTATATTC
*
105043886 ATATTAGATTAATATAATTATTTTTATATTAAATTAATATAA-TATTTT
1 ATATTAGATTAATATAATTATTTTCATATTAAATTAATATAATTATTTT
*
105043934 ATATTAGATTTAATATAATTATTTTCATATTAGATTAATATAATTATTT
1 ATATTAGA-TTAATATAATTATTTTCATATTAAATTAATATAATTATTT
105043983 ATGTATGAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
48 8 0.18
49 32 0.71
50 5 0.11
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (49 bp):
ATATTAGATTAATATAATTATTTTCATATTAAATTAATATAATTATTTT
Found at i:105044560 original size:14 final size:15
Alignment explanation
Indices: 105044529--105044565 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
105044519 TCACGTCATC
105044529 ATTTAACAAATAAAA
1 ATTTAACAAATAAAA
105044544 ATTTAACAAAT-AAA
1 ATTTAACAAATAAAA
105044558 ATTTAACA
1 ATTTAACA
105044566 GAGAGGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTTAACAAATAAAA
Found at i:105045668 original size:12 final size:11
Alignment explanation
Indices: 105045637--105045683 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
105045627 ACAATCAATT
105045637 AATTTTTT-AA
1 AATTTTTTAAA
105045647 AA--TTTTAAA
1 AATTTTTTAAA
105045656 AATTTTATTAAA
1 AATTTT-TTAAA
105045668 AATATTTTTAAA
1 AAT-TTTTTAAA
105045680 AATT
1 AATT
105045684 AATTAATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
8 4 0.12
9 4 0.12
10 2 0.06
11 3 0.09
12 16 0.50
13 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
AATTTTTTAAA
Found at i:105047336 original size:3 final size:3
Alignment explanation
Indices: 105047328--105047370 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
105047318 ATACAATATG
105047328 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
105047371 ACAAGATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:105049915 original size:17 final size:17
Alignment explanation
Indices: 105049880--105049914 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
105049870 TTTTTCTTAG
105049880 AATTTTATTAAAAATAA
1 AATTTTATTAAAAATAA
*
105049897 AATTTT-TTAATAATAA
1 AATTTTATTAAAAATAA
105049913 AA
1 AA
105049915 AATGTTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTTTATTAAAAATAA
Found at i:105050166 original size:17 final size:17
Alignment explanation
Indices: 105050144--105050177 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
105050134 AATTTATATT
105050144 ATTATTATTTATAATGC
1 ATTATTATTTATAATGC
105050161 ATTATTATTTATAATGC
1 ATTATTATTTATAATGC
105050178 TAAAACCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
ATTATTATTTATAATGC
Found at i:105050491 original size:22 final size:21
Alignment explanation
Indices: 105050453--105050504 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
105050443 ATAAAAAAAT
* *
105050453 TAAAAATTATTTTAAAATTTC
1 TAAAAATTATATAAAAATTTC
*
105050474 TAAAAATATATATAAAAATTTA
1 TAAAAAT-TATATAAAAATTTC
*
105050496 AAAAAATTA
1 TAAAAATTA
105050505 ATGTAAAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAAAATTATATAAAAATTTC
Found at i:105051104 original size:10 final size:10
Alignment explanation
Indices: 105051089--105051114 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
105051079 GATTAGTGAC
105051089 AAAATTTAGT
1 AAAATTTAGT
105051099 AAAATTTAGT
1 AAAATTTAGT
105051109 AAAATT
1 AAAATT
105051115 CAAAGTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (10 bp):
AAAATTTAGT
Found at i:105051779 original size:5 final size:5
Alignment explanation
Indices: 105051769--105051805 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
105051759 TTGTGTGTTC
105051769 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
105051806 TCACAAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:105053136 original size:269 final size:269
Alignment explanation
Indices: 105052657--105053194 Score: 1076
Period size: 269 Copynumber: 2.0 Consensus size: 269
105052647 AAAGGGAAAA
105052657 CAACCAGAAAATTCCGGTGAAGCTGATGTTGTAGAAGACTACAGCGATGGTGAACTTCTAGTCGC
1 CAACCAGAAAATTCCGGTGAAGCTGATGTTGTAGAAGACTACAGCGATGGTGAACTTCTAGTCGC
105052722 TTCTGTCAATGATTCTAAAGTAAGCGAGGAGTGGATACTTGATTCAGGCTGCACCTTCCATATGA
66 TTCTGTCAATGATTCTAAAGTAAGCGAGGAGTGGATACTTGATTCAGGCTGCACCTTCCATATGA
105052787 GTCCCAATCGAGATTGGTTTACAACTTACGAAACAGTATCTGAAGGTGTTGTTTTGATGAGAAAT
131 GTCCCAATCGAGATTGGTTTACAACTTACGAAACAGTATCTGAAGGTGTTGTTTTGATGAGAAAT
105052852 AATGCTTCGTGTAAAATCGCAGGTGTTGGAACAATTAAAGTTAAGATGTTTGATATAGTTGTCAG
196 AATGCTTCGTGTAAAATCGCAGGTGTTGGAACAATTAAAGTTAAGATGTTTGATATAGTTGTCAG
105052917 AACACTTAG
261 AACACTTAG
105052926 CAACCAGAAAATTCCGGTGAAGCTGATGTTGTAGAAGACTACAGCGATGGTGAACTTCTAGTCGC
1 CAACCAGAAAATTCCGGTGAAGCTGATGTTGTAGAAGACTACAGCGATGGTGAACTTCTAGTCGC
105052991 TTCTGTCAATGATTCTAAAGTAAGCGAGGAGTGGATACTTGATTCAGGCTGCACCTTCCATATGA
66 TTCTGTCAATGATTCTAAAGTAAGCGAGGAGTGGATACTTGATTCAGGCTGCACCTTCCATATGA
105053056 GTCCCAATCGAGATTGGTTTACAACTTACGAAACAGTATCTGAAGGTGTTGTTTTGATGAGAAAT
131 GTCCCAATCGAGATTGGTTTACAACTTACGAAACAGTATCTGAAGGTGTTGTTTTGATGAGAAAT
105053121 AATGCTTCGTGTAAAATCGCAGGTGTTGGAACAATTAAAGTTAAGATGTTTGATATAGTTGTCAG
196 AATGCTTCGTGTAAAATCGCAGGTGTTGGAACAATTAAAGTTAAGATGTTTGATATAGTTGTCAG
105053186 AACACTTAG
261 AACACTTAG
105053195 TGACGTGCGG
Statistics
Matches: 269, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
269 269 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (269 bp):
CAACCAGAAAATTCCGGTGAAGCTGATGTTGTAGAAGACTACAGCGATGGTGAACTTCTAGTCGC
TTCTGTCAATGATTCTAAAGTAAGCGAGGAGTGGATACTTGATTCAGGCTGCACCTTCCATATGA
GTCCCAATCGAGATTGGTTTACAACTTACGAAACAGTATCTGAAGGTGTTGTTTTGATGAGAAAT
AATGCTTCGTGTAAAATCGCAGGTGTTGGAACAATTAAAGTTAAGATGTTTGATATAGTTGTCAG
AACACTTAG
Found at i:105056502 original size:5 final size:5
Alignment explanation
Indices: 105056492--105056523 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
105056482 TTGTGTGTTC
105056492 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
105056524 TCACAGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:105056506 original size:9 final size:9
Alignment explanation
Indices: 105056492--105056522 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
105056482 TTGTGTGTTC
105056492 TTTATTTTA
1 TTTATTTTA
105056501 TTTATTTTA
1 TTTATTTTA
105056510 TTTTATTTTA
1 -TTTATTTTA
105056520 TTT
1 TTT
105056523 TTCACAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:105057965 original size:5 final size:5
Alignment explanation
Indices: 105057929--105057953 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
105057919 ATTATTTAAT
105057929 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
105057954 TTATATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:105062288 original size:22 final size:22
Alignment explanation
Indices: 105062247--105062305 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
105062237 GTTTTAATAA
* *
105062247 TTGTTTTAGTA-TCATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
105062268 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
105062290 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
105062306 GATTTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.48
22 10 0.30
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.68
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:105062304 original size:20 final size:22
Alignment explanation
Indices: 105062260--105062305 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
105062250 TTTTAGTATC
* *
105062260 ATTTTTATTTGTTTTAATATTT
1 ATTTTTATGTGTTTTAATATAT
105062282 ATTTTTATGT-TTTTAA-ATAT
1 ATTTTTATGTGTTTTAATATAT
105062302 ATTT
1 ATTT
105062306 GATTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTATGTGTTTTAATATAT
Found at i:105062322 original size:26 final size:24
Alignment explanation
Indices: 105062276--105062335 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
105062266 ATTTGTTTTA
*
105062276 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
105062300 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
105062326 TTTTTTATTT
1 ATATTTATTT
105062336 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:105069407 original size:169 final size:169
Alignment explanation
Indices: 105069126--105069449 Score: 542
Period size: 169 Copynumber: 1.9 Consensus size: 169
105069116 ACAATGAGGA
105069126 GGAGAGGCCCCTATTTATAGTTGATCCTCCTCAAAGTCAATGGTACAGATTAAAGTACATCAACA
1 GGAGAGGCCCCTATTTATAGTTGATCCTCCTCAAAGTCAATGGTACAGATTAAAGTACATCAACA
*
105069191 ACTAAGATTAAAAGCTATCTACAAAATCAAATCTCTAAGACTACAGAATCATAACTTCTAATAAT
66 ACTAAGATTAAAAGCTATCTACAAAATCAAATCTCTAAGACTACAGAATCATAACTTCTAAGAAT
105069256 ACAAGTCATCTCTAAGATTGCATATCTTCGAAGATTATG
131 ACAAGTCATCTCTAAGATTGCATATCTTCGAAGATTATG
* * * *
105069295 GGAGAGGCCTCTATTTGTAGTTGATCCT-CTCCAAATTCAATGGTACAGATTAAAGTACATCAAT
1 GGAGAGGCCCCTATTTATAGTTGATCCTCCT-CAAAGTCAATGGTACAGATTAAAGTACATCAAC
* * * * *
105069359 AGCTAAGATTAAAAGTTATCTACAAAATCAAATCTCTAAGATTACAGAATCATACCTTCTAAGAT
65 AACTAAGATTAAAAGCTATCTACAAAATCAAATCTCTAAGACTACAGAATCATAACTTCTAAGAA
105069424 TACAAGTCATCTCTAAGATTGCATAT
130 TACAAGTCATCTCTAAGATTGCATAT
105069450 ATTCAAAAAT
Statistics
Matches: 144, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
168 2 0.01
169 142 0.99
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (169 bp):
GGAGAGGCCCCTATTTATAGTTGATCCTCCTCAAAGTCAATGGTACAGATTAAAGTACATCAACA
ACTAAGATTAAAAGCTATCTACAAAATCAAATCTCTAAGACTACAGAATCATAACTTCTAAGAAT
ACAAGTCATCTCTAAGATTGCATATCTTCGAAGATTATG
Found at i:105069409 original size:22 final size:20
Alignment explanation
Indices: 105069383--105069443 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 20
105069373 GTTATCTACA
105069383 AAATCAAATCTCTAAGATTAC
1 AAATC-AATCTCTAAGATTAC
*
105069404 AGAATCATACCTTCTAAGATTAC
1 A-AATCA-ATC-TCTAAGATTAC
*
105069427 AAGTC-ATCTCTAAGATT
1 AAATCAATCTCTAAGATT
105069444 GCATATATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
19 9 0.26
20 2 0.06
21 2 0.06
22 9 0.26
23 12 0.35
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (20 bp):
AAATCAATCTCTAAGATTAC
Found at i:105069440 original size:19 final size:20
Alignment explanation
Indices: 105069390--105069443 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 20
105069380 ACAAAATCAA
105069390 ATCTCTAAGATTACAGAATC
1 ATCTCTAAGATTACAGAATC
*
105069410 ATACCTTCTAAGATTACA-AGTC
1 AT--C-TCTAAGATTACAGAATC
105069432 ATCTCTAAGATT
1 ATCTCTAAGATT
105069444 GCATATATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 9 0.30
20 3 0.10
22 6 0.20
23 12 0.40
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.33
Consensus pattern (20 bp):
ATCTCTAAGATTACAGAATC
Found at i:105072252 original size:5 final size:4
Alignment explanation
Indices: 105072135--105072286 Score: 63
Period size: 4 Copynumber: 36.5 Consensus size: 4
105072125 TTTTAATTCT
* * * * * * * *
105072135 TTTA TGTA TTCA TTTA TTTA TCTA CTTG CTTA TTTA TTCA -TTA TTTC
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * * *
105072182 TTTT TTTA TTTCA TTTG TTTA TTCA TTTA CTTA TCTA TTTA TATA TTGCTCA
1 TTTA TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--T-A
* * * * *
105072234 TTCA TTTA TTTA TTTTA TTTA TTTT TTTAA ATTC TTGTA TTCA TTTA TTTA
1 TTTA TTTA TTTA -TTTA TTTA TTTA TTT-A TTTA TT-TA TTTA TTTA TTTA
105072285 TT
1 TT
105072287 ATTCTTTCAT
Statistics
Matches: 105, Mismatches: 35, Indels: 16
0.67 0.22 0.10
Matches are distributed among these distances:
3 2 0.02
4 86 0.82
5 13 0.12
6 1 0.01
7 3 0.03
ACGTcount: A:0.22, C:0.10, G:0.03, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:105072390 original size:16 final size:15
Alignment explanation
Indices: 105072359--105072398 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
105072349 TTATTATTAT
105072359 TATTATTTTATCATC
1 TATTATTTTATCATC
*
105072374 TATTATTGTTATGATC
1 TATTATT-TTATCATC
105072390 TATTTATTT
1 TA-TTATTT
105072399 ATTACCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 7 0.32
16 10 0.45
17 5 0.23
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.62
Consensus pattern (15 bp):
TATTATTTTATCATC
Found at i:105072418 original size:25 final size:25
Alignment explanation
Indices: 105072389--105072437 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
105072379 TTGTTATGAT
105072389 CTATTTATTTATTACCCATTTTTTA
1 CTATTTATTTATTACCCATTTTTTA
105072414 CTATTTATTTATTACCCATTTTTT
1 CTATTTATTTATTACCCATTTTTT
105072438 TACATACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.61
Consensus pattern (25 bp):
CTATTTATTTATTACCCATTTTTTA
Found at i:105072518 original size:3 final size:3
Alignment explanation
Indices: 105072512--105072568 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
105072502 CTTCTTCTTC
105072512 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
105072560 TT- TTA TTA T
1 TTA TTA TTA T
105072569 AAATTTTACC
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:105073338 original size:26 final size:26
Alignment explanation
Indices: 105073309--105073416 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
105073299 TGGTACAAAT
105073309 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
105073335 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105073361 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105073387 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105073413 TGAT
1 TGAT
105073417 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105075410 original size:386 final size:386
Alignment explanation
Indices: 105074697--105075471 Score: 1523
Period size: 386 Copynumber: 2.0 Consensus size: 386
105074687 ATCTAAAGTA
105074697 ATAAACTGCAGTACGCGCGATTTCGTACATTTTGATAATTTGGGCTTAATGGGCCAAAGATCGGG
1 ATAAACTGCAGTACGCGCGATTTCGTACATTTTGATAATTTGGGCTTAATGGGCCAAAGATCGGG
*
105074762 TTCATGGGCCAACGGGCCCAATTCGGTAAGTATGCGCGGTAAGTGTTCTGATAGTACGTAAATAG
66 TTCATGGGCCAACGGGCCCAATTCGGTAAGTATGCGCGATAAGTGTTCTGATAGTACGTAAATAG
*
105074827 TTAGGATATGCATGAAAACCCTAAAAGCAGCTAAATTACTATAATACCCCTATGTATGAAAGTTT
131 TTAGGATATGCATGAAAACCCTAAAAGCAGCTAAATTACTATAATACCCCTATGTATGAAAATTT
105074892 ATTGTTATACCCCTAGGTGCAAAATTACCGTTATACCCCTATGATTAATTTTGACTGAAAAGCAT
196 ATTGTTATACCCCTAGGTGCAAAATTACCGTTATACCCCTATGATTAATTTTGACTGAAAAGCAT
*
105074957 GACGATCTGATTCTGTATGATGTATGCCATGATTATATATCTGTTGCATGGGGACATGGGTTATA
261 GACGATCTGATTCTGTATGATGTATGCCATGATTATATATCTGTTGCATGGGGACATAGGTTATA
105075022 TTATAGAGGAAGCGTCCTAGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACAT
326 TTATAGAGGAAGCGTCCTAGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACAT
105075083 ATAAACTGCAGTACGCGCGATTTCGTACATTTTGATAATTTGGGCTTAATGGGCCAAAGATCGGG
1 ATAAACTGCAGTACGCGCGATTTCGTACATTTTGATAATTTGGGCTTAATGGGCCAAAGATCGGG
105075148 TTCATGGGCCAACGGGCCCAATTCGGTAAGTATGCGCGATAAGTGTTCTGATAGTACGTAAATAG
66 TTCATGGGCCAACGGGCCCAATTCGGTAAGTATGCGCGATAAGTGTTCTGATAGTACGTAAATAG
105075213 TTAGGATATGCATGAAAACCCTAAAAGCAGCTAAATTACTATAATACCCCTATGTATGAAAATTT
131 TTAGGATATGCATGAAAACCCTAAAAGCAGCTAAATTACTATAATACCCCTATGTATGAAAATTT
105075278 ATTGTTATACCCCTAGGTGCAAAATTACCGTTATACCCCTATGATTAATTTTGACTGAAAAGCAT
196 ATTGTTATACCCCTAGGTGCAAAATTACCGTTATACCCCTATGATTAATTTTGACTGAAAAGCAT
105075343 GACGATCTGATTCTGTATGATGTATGCCATGATTATATATCTGTTGCATGGGGACATAGGTTATA
261 GACGATCTGATTCTGTATGATGTATGCCATGATTATATATCTGTTGCATGGGGACATAGGTTATA
105075408 TTATAGAGGAAGCGTCCTAGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACAT
326 TTATAGAGGAAGCGTCCTAGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACAT
105075469 ATA
1 ATA
105075472 TCTGTTCTGG
Statistics
Matches: 386, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
386 386 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (386 bp):
ATAAACTGCAGTACGCGCGATTTCGTACATTTTGATAATTTGGGCTTAATGGGCCAAAGATCGGG
TTCATGGGCCAACGGGCCCAATTCGGTAAGTATGCGCGATAAGTGTTCTGATAGTACGTAAATAG
TTAGGATATGCATGAAAACCCTAAAAGCAGCTAAATTACTATAATACCCCTATGTATGAAAATTT
ATTGTTATACCCCTAGGTGCAAAATTACCGTTATACCCCTATGATTAATTTTGACTGAAAAGCAT
GACGATCTGATTCTGTATGATGTATGCCATGATTATATATCTGTTGCATGGGGACATAGGTTATA
TTATAGAGGAAGCGTCCTAGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACAT
Done.