Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 325 of 344
Found at i:106193155 original size:31 final size:30
Alignment explanation
Indices: 106193119--106193193 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 30
106193109 TGTTAAGGTT
106193119 AGGACTAAAATT-TTAAAATTTAAAAAGTA-A
1 AGGACTAAAATTATT--AATTTAAAAAGTATA
106193149 AGGGACTAAAATTGATTAATTTAAAAAGTATA
1 A-GGACTAAAATT-ATTAATTTAAAAAGTATA
*
106193181 AGGATTAAAATTA
1 AGGACTAAAATTA
106193194 ATCAAACTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
30 2 0.05
31 34 0.85
32 2 0.05
33 2 0.05
ACGTcount: A:0.53, C:0.03, G:0.13, T:0.31
Consensus pattern (30 bp):
AGGACTAAAATTATTAATTTAAAAAGTATA
Found at i:106193205 original size:31 final size:31
Alignment explanation
Indices: 106193139--106193218 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
106193129 TTTTAAAATT
* * * **
106193139 TAAAAAGTA-AAGGGACTAAAATTGATTAATT
1 TAAAAAGTATAA-GGATTAAAATTAATCAAAC
106193170 TAAAAAGTATAAGGATTAAAATTAATCAAAC
1 TAAAAAGTATAAGGATTAAAATTAATCAAAC
106193201 T-AAAA-TATAAGGATTAAA
1 TAAAAAGTATAAGGATTAAA
106193219 TCCACAACAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 13 0.30
30 4 0.09
31 24 0.56
32 2 0.05
ACGTcount: A:0.56, C:0.04, G:0.12, T:0.28
Consensus pattern (31 bp):
TAAAAAGTATAAGGATTAAAATTAATCAAAC
Found at i:106201999 original size:28 final size:28
Alignment explanation
Indices: 106201940--106201999 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
106201930 ATTAACCGAA
* *
106201940 TTAATTAAAATTTTAAAATATTTAGTAG
1 TTAATTAAAATTTTAAAATATGTAGTAC
106201968 TTAATTAAAATTTTAAAAATATGTA-TAC
1 TTAATTAAAATTTT-AAAATATGTAGTAC
106201996 TTAA
1 TTAA
106202000 ATAATACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 20 0.69
29 9 0.31
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (28 bp):
TTAATTAAAATTTTAAAATATGTAGTAC
Found at i:106204434 original size:24 final size:27
Alignment explanation
Indices: 106204389--106204439 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 27
106204379 TTTTTTATAC
106204389 TATATATTGCTTTTATATGTATTATGTG
1 TATATATT-CTTTTATATGTATTATGTG
106204417 TATATATT-TTTT-TA-GTATTATGT
1 TATATATTCTTTTATATGTATTATGT
106204440 TTTTTATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 9 0.39
25 2 0.09
26 4 0.17
28 8 0.35
ACGTcount: A:0.25, C:0.02, G:0.12, T:0.61
Consensus pattern (27 bp):
TATATATTCTTTTATATGTATTATGTG
Found at i:106204483 original size:22 final size:23
Alignment explanation
Indices: 106204441--106204485 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
106204431 GTATTATGTT
106204441 TTTTATATACTATTATGTATATA
1 TTTTATATACTATTATGTATATA
*
106204464 TTTTA-ATATTATTA-GTTATATA
1 TTTTATATACTATTATG-TATATA
106204486 CCCTTTGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 14 0.70
23 5 0.25
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTTATATACTATTATGTATATA
Found at i:106205214 original size:23 final size:23
Alignment explanation
Indices: 106205146--106205226 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 23
106205136 TTTATGTACC
106205146 TATACTTTTC-ATACTATATTATA
1 TATA-TTTTCAATACTATATTATA
*
106205169 TATCTATCCTTTCAATA-TCATATTGTA
1 TA--TAT--TTTCAATACT-ATATTATA
*
106205196 TATATTTTCAATACTATATTACA
1 TATATTTTCAATACTATATTATA
*
106205219 TAGATTTT
1 TATATTTT
106205227 TTTCCTATTA
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
23 23 0.49
24 2 0.04
25 5 0.11
26 5 0.11
27 12 0.26
ACGTcount: A:0.33, C:0.14, G:0.02, T:0.51
Consensus pattern (23 bp):
TATATTTTCAATACTATATTATA
Found at i:106209214 original size:14 final size:14
Alignment explanation
Indices: 106209195--106209245 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
106209185 TTCATCCCTA
106209195 TTATTATTTATACT
1 TTATTATTTATACT
106209209 TTATTA-TTATCAC-
1 TTATTATTTAT-ACT
106209222 TTATTATTT-TACT
1 TTATTATTTATACT
*
106209235 ATTGTTATTTA
1 -TTATTATTTA
106209246 ATCTATTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 11 0.35
14 18 0.58
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (14 bp):
TTATTATTTATACT
Found at i:106209291 original size:44 final size:44
Alignment explanation
Indices: 106209222--106209314 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
106209212 TTATTATCAC
* * * *
106209222 TTATTATTTTACTATTGTTATTTAATCTATTA-TCATTATCATTA
1 TTATTATTTTACTATTATAACTTAATATATTAGT-ATTATCATTA
* *
106209266 TTATTATTTTACTATTATAACTTAATATATTAGTATTATTATTT
1 TTATTATTTTACTATTATAACTTAATATATTAGTATTATCATTA
106209310 TTATT
1 TTATT
106209315 CTCGTCACTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (44 bp):
TTATTATTTTACTATTATAACTTAATATATTAGTATTATCATTA
Found at i:106209371 original size:3 final size:3
Alignment explanation
Indices: 106209209--106209359 Score: 76
Period size: 3 Copynumber: 50.3 Consensus size: 3
106209199 TATTTATACT
* * * *
106209209 TTA TTA TTA TCA CTTA TTA TT- TTA CTA TTG TTA TT- TAA TCTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
* * * * *
106209254 TCA TTA TCA TTA TTA TTA TT- TTA CTA TTA TAA CTTA ATA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * ** * * * *
106209298 GTA TTA TTA TTT TTA TTC TCG TCA CTG TCA TTCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
106209344 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
106209360 ATGTTTTATT
Statistics
Matches: 108, Mismatches: 32, Indels: 16
0.69 0.21 0.10
Matches are distributed among these distances:
2 7 0.06
3 92 0.85
4 9 0.08
ACGTcount: A:0.30, C:0.09, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:106209575 original size:28 final size:26
Alignment explanation
Indices: 106209495--106209576 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 26
106209485 CATACTATTC
* * *
106209495 ATATAT-TTTTATGTTATCTCATGCAT
1 ATATATATTTTATATT-TTTCATGTAT
*
106209521 ATATATATTTTAATATTATT-A-GT-T
1 ATATATATTTT-ATATTTTTCATGTAT
106209545 ATATATATATTTATATTGTTTCATGTAT
1 ATATATAT-TTTATATT-TTTCATGTAT
106209573 ATAT
1 ATAT
106209577 TTTTATATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
24 14 0.32
25 6 0.14
26 8 0.18
27 7 0.16
28 9 0.20
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (26 bp):
ATATATATTTTATATTTTTCATGTAT
Found at i:106209640 original size:21 final size:22
Alignment explanation
Indices: 106209608--106209660 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
106209598 ATTAATACTA
* *
106209608 GTATATGTTTT-AT-TATATAT
1 GTATATATTTTAATATATATAG
106209628 GTATATATCTTTAATATATATAG
1 GTATATAT-TTTAATATATATAG
106209651 GTATATATTT
1 GTATATATTT
106209661 ATGTAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 7 0.25
21 3 0.11
22 4 0.14
23 14 0.50
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (22 bp):
GTATATATTTTAATATATATAG
Found at i:106209751 original size:24 final size:25
Alignment explanation
Indices: 106209708--106209771 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
106209698 TTCTAATATG
* *
106209708 TATATATTATGTAGATATTTTAATA
1 TATATATTATGTATACATTTTAATA
**
106209733 T-TATATTATGTATACATTTTTTTA
1 TATATATTATGTATACATTTTAATA
*
106209757 TATATATTACGTATA
1 TATATATTATGTATA
106209772 TATATCTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 20 0.61
25 13 0.39
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (25 bp):
TATATATTATGTATACATTTTAATA
Found at i:106209801 original size:252 final size:248
Alignment explanation
Indices: 106209338--106209806 Score: 583
Period size: 252 Copynumber: 1.9 Consensus size: 248
106209328 TTCATTATTA
* * * *
106209338 TTATTATTATTATTATTATTATATGTTTTATTATATATGTATATATCTTTAATATATATATGTTT
1 TTATTATTATTAATACTAGTATATGTTTTATTATATATGTATATATCTTTAATATATATATATTT
* *
106209403 ATGTAGTATTATTAATAATTGTTTTGTAACATTATTATTCTTATTTCTAATATGTATATATTATG
66 ATGTAATATTATTAATAAGTGTTTTGTAAC--TATTA-T-TTATTTCTAATATGTATATATTATG
* * * * *
106209468 TATATATTTTTAAATATCATACTATTCATATATTTTTATGTTATCTCATGCATATATATATTTTA
127 TAGATATTTTTAAATATCATACTATTCATACATTTTTATATTATATCACGCATATATATATTTTA
106209533 ATATTATTAGTTATATATATATTTATATTGTTTCATGTATATATTTTTATATTATCC
192 ATATTATTAGTTATATATATATTTATATTGTTTCATGTATATATTTTTATATTATCC
106209590 TTATTATTATTAATACTAGTATATGTTTTATTATATATGTATATATCTTTAATATATATAGGTAT
1 TTATTATTATTAATACTAGTATATGTTTTATTATATATGTATATATC-TT--TA-ATATA--TAT
*
106209655 ATATTTATGTAATATTATTAATAGGTGTTTT-TAAC-ATTA-TTATTTCTAATATGTATATATTA
60 ATATTTATGTAATATTATTAATAAGTGTTTTGTAACTATTATTTATTTCTAATATGTATATATTA
* * * * * *
106209717 TGTAGATA-TTTT-AATATTATATTATGT-ATACATTTTTTTATATATATTACGTATATATATCT
125 TGTAGATATTTTTAAATATCATACTAT-TCATACATTTTTATAT-TATATCACGCATATATAT-A
*
106209779 TTTTAATATTGTATT-TTTATATATATAT
187 TTTTAATA-T-TATTAGTTATATATATAT
106209807 ATCATGTATA
Statistics
Matches: 187, Mismatches: 19, Indels: 22
0.82 0.08 0.10
Matches are distributed among these distances:
249 22 0.12
250 19 0.10
251 38 0.20
252 57 0.30
253 6 0.03
254 4 0.02
255 2 0.01
256 5 0.03
257 4 0.02
258 30 0.16
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.56
Consensus pattern (248 bp):
TTATTATTATTAATACTAGTATATGTTTTATTATATATGTATATATCTTTAATATATATATATTT
ATGTAATATTATTAATAAGTGTTTTGTAACTATTATTTATTTCTAATATGTATATATTATGTAGA
TATTTTTAAATATCATACTATTCATACATTTTTATATTATATCACGCATATATATATTTTAATAT
TATTAGTTATATATATATTTATATTGTTTCATGTATATATTTTTATATTATCC
Found at i:106209933 original size:25 final size:25
Alignment explanation
Indices: 106209866--106209934 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
106209856 TCATGTATAT
* *
106209866 ATATTTTTAATAACTATATTATGTAT
1 ATATTTTTAAT-ACTATGTTATGTAC
* * *
106209892 GTATTTTTAACATTATGTTATGTAC
1 ATATTTTTAATACTATGTTATGTAC
106209917 ATATTTTTAATACTATGT
1 ATATTTTTAATACTATGT
106209935 ATATACCTGT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 26 0.74
26 9 0.26
ACGTcount: A:0.33, C:0.06, G:0.07, T:0.54
Consensus pattern (25 bp):
ATATTTTTAATACTATGTTATGTAC
Found at i:106212273 original size:88 final size:87
Alignment explanation
Indices: 106212108--106212266 Score: 236
Period size: 84 Copynumber: 1.9 Consensus size: 87
106212098 CGACCAATTC
* * *
106212108 TTTATTGATTTAGTTAGTTTTTTATTAATTTAATTCTTCTTCAATTTTATATACTAGTTAGACTA
1 TTTATCGATTTAATTAGTTTTTTACTAATTTAA-TCTTCTTCAATTTTATATACTAGTTAGACTA
106212173 TCAATTTCTAATTCGACTAACTT
65 TCAATTTCTAATTCGACTAACTT
*
106212196 TTTATCGATTTAATTAGTTTTTTACT-ATTT-A-CTTCTTCGATTTTATATACTAGTT-GAACTA
1 TTTATCGATTTAATTAGTTTTTTACTAATTTAATCTTCTTCAATTTTATATACTAGTTAG-ACTA
106212257 TCAATTTCTA
65 TCAATTTCTA
106212267 GCTAATTGGA
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
83 1 0.02
84 37 0.56
86 1 0.02
87 4 0.06
88 23 0.35
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.53
Consensus pattern (87 bp):
TTTATCGATTTAATTAGTTTTTTACTAATTTAATCTTCTTCAATTTTATATACTAGTTAGACTAT
CAATTTCTAATTCGACTAACTT
Found at i:106213158 original size:24 final size:25
Alignment explanation
Indices: 106213131--106213179 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
106213121 CTTTTTTTAT
*
106213131 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
106213155 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
106213180 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:106213172 original size:25 final size:23
Alignment explanation
Indices: 106213143--106213207 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
106213133 AATAAAAAAC
*
106213143 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
106213168 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
106213189 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
106213208 AATAAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:106213206 original size:19 final size:20
Alignment explanation
Indices: 106213169--106213207 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
106213159 TCAAATACAT
106213169 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
106213189 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
106213208 AATAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:106213213 original size:20 final size:20
Alignment explanation
Indices: 106213170--106213213 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
106213160 CAAATACATT
*
106213170 TAAAACATAAAAACAAATAT
1 TAAAACATAAAAACAAATAA
*
106213190 TAAAACA-AAAAATAAATAAA
1 TAAAACATAAAAACAAAT-AA
106213210 TAAA
1 TAAA
106213214 TAATGGGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (20 bp):
TAAAACATAAAAACAAATAA
Found at i:106215123 original size:16 final size:16
Alignment explanation
Indices: 106215098--106215128 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106215088 CACCACTTGG
*
106215098 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
106215114 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
106215129 TCATAATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:106219864 original size:16 final size:16
Alignment explanation
Indices: 106219839--106219869 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106219829 CACCACTTGG
*
106219839 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
106219855 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
106219870 TCATAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:106222269 original size:29 final size:30
Alignment explanation
Indices: 106222216--106222326 Score: 104
Period size: 31 Copynumber: 3.7 Consensus size: 30
106222206 TATTAAAATT
* *
106222216 ATACATG-AACTTTGATCTAATGTGCAATTTG
1 ATACATGAAACTTTGAT-T-TTGTGCAATATG
106222247 ATACATGAAA-TTTGATTTTGTGCAATATG
1 ATACATGAAACTTTGATTTTGTGCAATATG
* * *
106222276 -CACATTAAACTTTGATTTTGGTTCAA-ATG
1 ATACATGAAACTTTGATTTT-GTGCAATATG
*
106222305 TATACATAAAACTTTGATTTTG
1 -ATACATGAAACTTTGATTTTG
106222327 ATTCAATTGT
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
28 7 0.10
29 22 0.32
30 7 0.10
31 30 0.44
32 2 0.03
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.41
Consensus pattern (30 bp):
ATACATGAAACTTTGATTTTGTGCAATATG
Found at i:106222320 original size:31 final size:31
Alignment explanation
Indices: 106222277--106222342 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
106222267 TGCAATATGC
* *
106222277 ACATTAAACTTTGATTTTGGTTCAAATGTAT
1 ACATAAAACTTTGATTTTGATTCAAATGTAT
*
106222308 ACATAAAACTTTGATTTTGATTCAATTGTAT
1 ACATAAAACTTTGATTTTGATTCAAATGTAT
106222339 ACAT
1 ACAT
106222343 TTAAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (31 bp):
ACATAAAACTTTGATTTTGATTCAAATGTAT
Found at i:106222873 original size:86 final size:87
Alignment explanation
Indices: 106222758--106223013 Score: 333
Period size: 87 Copynumber: 3.0 Consensus size: 87
106222748 CCTTTTGTCT
* * *
106222758 TTTTTTTTGCACTCATTTAAGCAATTGAACTTT-TAAATGCATCAAAAAGACCCTCAAACTTCTT
1 TTTTTTTTGCACTCAATTAAGCACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTCTT
*
106222822 CAAAAAAAGCAATTAGGCCCCC
66 CAAAAAAAGCAATTAAGCCCCC
* * *
106222844 TTTTTTTTGCACTCAAATAAGCACTTGAACTTTCAAAATACTTCAAAAAGACCCTCAAACTTCTT
1 TTTTTTTTGCACTCAATTAAGCACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTCTT
106222909 CAAAAAAAGCAATTAAG-CCCC
66 CAAAAAAAGCAATTAAGCCCCC
** * * * * * *
106222930 -TTTTTTT-CACTCAATTGTGTACTTGAACTTTCAAAAATGTATAAAAAAGATCCTCAAAATTTT
1 TTTTTTTTGCACTCAATTAAGCACTTGAACTTTC-AAAATGCATCAAAAAGACCCTCAAACTTCT
106222993 TC-AAAAAAGCAATTAAGCCCC
65 TCAAAAAAAGCAATTAAGCCCC
106223014 TACTTTATTA
Statistics
Matches: 149, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
84 36 0.24
85 35 0.23
86 34 0.23
87 44 0.30
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (87 bp):
TTTTTTTTGCACTCAATTAAGCACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTCTT
CAAAAAAAGCAATTAAGCCCCC
Found at i:106223249 original size:10 final size:10
Alignment explanation
Indices: 106223234--106223381 Score: 62
Period size: 10 Copynumber: 15.4 Consensus size: 10
106223224 GGTACAGTAA
106223234 TTTTTATAAT
1 TTTTTATAAT
* *
106223244 TTTTTACGAAA
1 TTTTTA-TAAT
*
106223255 TTTATAT-A-
1 TTTTTATAAT
*
106223263 TTTTTA-CAT
1 TTTTTATAAT
*
106223272 TTTATATAAT
1 TTTTTATAAT
*
106223282 TTTCTTATGA-
1 TTT-TTATAAT
* *
106223292 -CTTTATAAA
1 TTTTTATAAT
*
106223301 ATTTTATAAT
1 TTTTTATAAT
106223311 TTTTTAT-A-
1 TTTTTATAAT
*
106223319 TTTCTAT-AT
1 TTTTTATAAT
*
106223328 ATTTTATAAT
1 TTTTTATAAT
**
106223338 TTTTTACGA-
1 TTTTTATAAT
*
106223347 TTTTTATAAA
1 TTTTTATAAT
* *
106223357 ATTTTACAAT
1 TTTTTATAAT
106223367 TTTTTATATAT
1 TTTTTATA-AT
106223378 TTTT
1 TTTT
106223382 ATGATTTATA
Statistics
Matches: 100, Mismatches: 27, Indels: 21
0.68 0.18 0.14
Matches are distributed among these distances:
8 18 0.18
9 20 0.20
10 45 0.45
11 17 0.17
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:106223279 original size:19 final size:19
Alignment explanation
Indices: 106223257--106223397 Score: 66
Period size: 19 Copynumber: 7.4 Consensus size: 19
106223247 TTACGAAATT
106223257 TATATATTTTTACATTTTA
1 TATATATTTTTACATTTTA
* *
106223276 TATA-ATTTTCTTATGACTTTA
1 TATATA-TTT-TTA-CATTTTA
*
106223297 TA-AAATTTTATA-ATTTT-
1 TATATATTTT-TACATTTTA
*
106223314 T-TATATTTCTATATATTTTA
1 TATATATTT-T-TACATTTTA
106223334 TA-AT-TTTTTACGATTTT-
1 TATATATTTTTAC-ATTTTA
* * *
106223351 TATAAAATTTTACAATTTTT
1 TATATATTTTTAC-ATTTTA
*
106223371 TATATATTTTTATGA-TTTA
1 TATATATTTTTA-CATTTTA
106223390 TATATATT
1 TATATATT
106223398 CTAATTTTAA
Statistics
Matches: 95, Mismatches: 12, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
17 10 0.11
18 16 0.17
19 38 0.40
20 23 0.24
21 8 0.08
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATTTTTACATTTTA
Found at i:106223382 original size:10 final size:10
Alignment explanation
Indices: 106223255--106223397 Score: 65
Period size: 10 Copynumber: 15.0 Consensus size: 10
106223245 TTTTACGAAA
106223255 TTTATATATT
1 TTTATATATT
*
106223265 TTTACAT-TT
1 TTTATATATT
*
106223274 TATATA-ATT
1 TTTATATATT
*
106223283 TTCT-TATGA-C
1 TT-TATAT-ATT
* *
106223293 TTTATAAAAT
1 TTTATATATT
106223303 TTTATA-ATT
1 TTTATATATT
106223312 TTT-TATATT
1 TTTATATATT
*
106223321 TCTATATA-T
1 TTTATATATT
106223330 TTTATA-ATT
1 TTTATATATT
*
106223339 TTT-TACGATT
1 TTTATA-TATT
* *
106223349 TTTATAAAAT
1 TTTATATATT
*
106223359 TTTACA-ATTT
1 TTTATATA-TT
106223369 TTTATATATT
1 TTTATATATT
*
106223379 TTTAT-GATT
1 TTTATATATT
*
106223388 TATATATATT
1 TTTATATATT
106223398 CTAATTTTAA
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
8 5 0.05
9 41 0.41
10 50 0.50
11 4 0.04
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (10 bp):
TTTATATATT
Found at i:106223391 original size:56 final size:56
Alignment explanation
Indices: 106223236--106223375 Score: 158
Period size: 56 Copynumber: 2.5 Consensus size: 56
106223226 TACAGTAATT
** * * * * *
106223236 TTTATAATTTTTTACGAAATTTATATATTTTTACAT-TTTATATAATTTTCTTATGAC
1 TTTATAAAATTTTAC-AATTTTTTATATTTCTATATATTT-TATAATTTTCTTACGAC
* *
106223293 TTTATAAAATTTTATAATTTTTTATATTTCTATATATTTTATAATTTT-TTACGATT
1 TTTATAAAATTTTACAATTTTTTATATTTCTATATATTTTATAATTTTCTTACGA-C
106223349 TTTATAAAATTTTACAATTTTTTATAT
1 TTTATAAAATTTTACAATTTTTTATAT
106223376 ATTTTTATGA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
55 5 0.07
56 51 0.72
57 15 0.21
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (56 bp):
TTTATAAAATTTTACAATTTTTTATATTTCTATATATTTTATAATTTTCTTACGAC
Found at i:106223412 original size:56 final size:55
Alignment explanation
Indices: 106223296--106223412 Score: 123
Period size: 56 Copynumber: 2.1 Consensus size: 55
106223286 TTATGACTTT
* * * *
106223296 ATAAAATTTTATAATTTTTTATATTTCTATATATTTTATAATTTTTTACGATTTTT
1 ATAAAATTTTACAATTTTTTATATTTCTATATATTTTATAATATTCTAC-ATTTTA
*
106223352 ATAAAATTTTACAATTTTTTATATATT-TTTATGA-TTTATATATATTCTA-ATTTTAA
1 ATAAAATTTTACAATTTTTTATAT-TTCTATAT-ATTTTATA-ATATTCTACATTTT-A
106223408 ATAAA
1 ATAAA
106223413 TTGTTAATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
55 5 0.10
56 38 0.73
57 9 0.17
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (55 bp):
ATAAAATTTTACAATTTTTTATATTTCTATATATTTTATAATATTCTACATTTTA
Found at i:106223652 original size:90 final size:87
Alignment explanation
Indices: 106223484--106223710 Score: 300
Period size: 90 Copynumber: 2.6 Consensus size: 87
106223474 AATTTTTAAT
* * *
106223484 AAAAGCAAGGGCTTAATT-TTTTTTT-TAAAGTTTGAAGGTCTTTTTGATGCATTTTGAAAGTTC
1 AAAAGTAAGGGCTTAATTGTTTTTTTGAAAAGTTTG-AGGGCTTTTTGATGCATTTTGAAAGTTC
106223547 AAATACCAAATTGAGTG-AAAAA
65 AAATACCAAATTGAGTGCAAAAA
106223569 AAAAGGTAAGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCATTTTTGATGCATTTTGAAAG
1 AAAA-GTAAGGGCTTAATTG-TTTTTTTGAAAA-GTTTGAGGGC-TTTTTGATGCATTTTGAAAG
*
106223634 TTCAAGTACCCAAA-TGAGTGCAAAAA
62 TTCAAATA-CCAAATTGAGTGCAAAAA
*
106223660 AAAAGTACGGGCTTAATTGTTTTTTTTTGAAAAAGTTTGAGGGCTTTTTGA
1 AAAAGTAAGGGCTTAATTG--TTTTTTTG-AAAAGTTTGAGGGCTTTTTGA
106223711 ACCCTTAAGC
Statistics
Matches: 126, Mismatches: 6, Indels: 15
0.86 0.04 0.10
Matches are distributed among these distances:
85 4 0.03
86 13 0.10
88 7 0.06
89 7 0.06
90 59 0.47
91 32 0.25
92 4 0.03
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.37
Consensus pattern (87 bp):
AAAAGTAAGGGCTTAATTGTTTTTTTGAAAAGTTTGAGGGCTTTTTGATGCATTTTGAAAGTTCA
AATACCAAATTGAGTGCAAAAA
Found at i:106225064 original size:21 final size:21
Alignment explanation
Indices: 106225034--106225081 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
106225024 AACTATAACC
106225034 CTAAA-CTCGAACTCT-AAACT
1 CTAAACCTCGAAC-CTAAAACT
*
106225054 CTCAACCTCGAACCTAAAACT
1 CTAAACCTCGAACCTAAAACT
106225075 CTAAACC
1 CTAAACC
106225082 ATAAACCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.40, C:0.35, G:0.04, T:0.21
Consensus pattern (21 bp):
CTAAACCTCGAACCTAAAACT
Found at i:106225554 original size:16 final size:15
Alignment explanation
Indices: 106225520--106225586 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
106225510 TAATTGATAC
* *
106225520 AAAATAATATTATTT
1 AAAATAATAATAATT
106225535 AAAATAATAAATAATT
1 AAAATAAT-AATAATT
* *
106225551 AAAAT-ATACTAAAT
1 AAAATAATAATAATT
*
106225565 ACAAAT-ATTATAA-T
1 A-AAATAATAATAATT
106225579 AAAATAAT
1 AAAATAAT
106225587 TCCTACTCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
13 4 0.09
14 10 0.23
15 19 0.44
16 10 0.23
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAATAATAATAATT
Found at i:106225996 original size:17 final size:18
Alignment explanation
Indices: 106225974--106226011 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
106225964 GACGATATTC
106225974 TTTTAT-TCCAAAATACA
1 TTTTATATCCAAAATACA
*
106225991 TTTTATGATTCAAAATACA
1 TTTTAT-ATCCAAAATACA
106226010 TT
1 TT
106226012 AAAATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.39, C:0.13, G:0.03, T:0.45
Consensus pattern (18 bp):
TTTTATATCCAAAATACA
Found at i:106241195 original size:28 final size:27
Alignment explanation
Indices: 106241164--106241220 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
106241154 TAAAATAGAA
* *
106241164 TATACACAAAGATTTAAAATAAATCATG
1 TATACA-AAAAATTTAAAATAAATAATG
*
106241192 TATATAAAAAATTTAAAATAAATAATG
1 TATACAAAAAATTTAAAATAAATAATG
106241219 TA
1 TA
106241221 AAAATAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (27 bp):
TATACAAAAAATTTAAAATAAATAATG
Found at i:106242036 original size:24 final size:23
Alignment explanation
Indices: 106241991--106242045 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
106241981 CAATAATAGA
106241991 ATTAA-TAATAAAAATAAAGTTG
1 ATTAATTAATAAAAATAAAGTTG
106242013 ATTAATTAATAAAAA-AAATGGTTG
1 ATTAATTAATAAAAATAAA--GTTG
106242037 ATTAATTAA
1 ATTAATTAA
106242046 AAATGGACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 8 0.27
23 9 0.30
24 13 0.43
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (23 bp):
ATTAATTAATAAAAATAAAGTTG
Found at i:106244056 original size:12 final size:12
Alignment explanation
Indices: 106244039--106244063 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
106244029 TAATGAGTTT
106244039 GTTGTGCTTGAG
1 GTTGTGCTTGAG
106244051 GTTGTGCTTGAG
1 GTTGTGCTTGAG
106244063 G
1 G
106244064 GCAAGCATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.44, T:0.40
Consensus pattern (12 bp):
GTTGTGCTTGAG
Found at i:106244401 original size:15 final size:15
Alignment explanation
Indices: 106244370--106244412 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
106244360 TTGTGGGGTT
106244370 TTTTAAAAATATTTTA
1 TTTTAAAAATA-TTTA
106244386 TTTATAAAAATA-TTA
1 TTT-TAAAAATATTTA
106244401 TTTTAATAAATA
1 TTTTAA-AAATA
106244413 AATTTCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.12
15 11 0.44
16 3 0.12
17 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTTAAAAATATTTA
Found at i:106244409 original size:17 final size:17
Alignment explanation
Indices: 106244373--106244410 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
106244363 TGGGGTTTTT
*
106244373 TAAAAATATTTTATTTA
1 TAAAAATATTTTATTAA
106244390 TAAAAATATTATT-TTAA
1 TAAAAATATT-TTATTAA
106244407 TAAA
1 TAAA
106244411 TAAATTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAAAATATTTTATTAA
Found at i:106245232 original size:18 final size:17
Alignment explanation
Indices: 106245205--106245238 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
106245195 TGATTATTTG
106245205 TATGTTTGTTATACATA
1 TATGTTTGTTATACATA
106245222 TATGATTTGTTATACAT
1 TATG-TTTGTTATACAT
106245239 TTTTTGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (17 bp):
TATGTTTGTTATACATA
Found at i:106248594 original size:19 final size:20
Alignment explanation
Indices: 106248570--106248609 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
106248560 ATTGATCTTC
106248570 TCTGAT-AAAAATTATACAT
1 TCTGATAAAAAATTATACAT
*
106248589 TCTGATAAAAAATTATGCAT
1 TCTGATAAAAAATTATACAT
106248609 T
1 T
106248610 TTGTACTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (20 bp):
TCTGATAAAAAATTATACAT
Found at i:106251443 original size:19 final size:19
Alignment explanation
Indices: 106251418--106251469 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
106251408 AATTACAAGA
106251418 AAAAAATCAAAATGATTT-T
1 AAAAAATCAAAAT-ATTTAT
*
106251437 CAAAAATTCAAAATATTTAT
1 -AAAAAATCAAAATATTTAT
106251457 AAAAAATCCAAAA
1 AAAAAAT-CAAAA
106251470 CTTATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAAATCAAAATATTTAT
Found at i:106260112 original size:19 final size:19
Alignment explanation
Indices: 106260078--106260149 Score: 58
Period size: 20 Copynumber: 3.7 Consensus size: 19
106260068 TTATTTGTAT
106260078 TTTTTATATATTTAAAATTTA
1 TTTTTA-AT-TTTAAAATTTA
106260099 TTTTTAATTTTAAAAATTTA
1 TTTTTAATTTT-AAAATTTA
* * *
106260119 --ATTAATTTCAAAATTAA
1 TTTTTAATTTTAAAATTTA
*
106260136 TATTTAATTATTAA
1 TTTTTAATT-TTAA
106260150 CACTATTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.17
18 7 0.17
19 9 0.21
20 13 0.31
21 6 0.14
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTTAATTTTAAAATTTA
Found at i:106260114 original size:20 final size:21
Alignment explanation
Indices: 106260078--106260118 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
106260068 TTATTTGTAT
106260078 TTTTTATATATTTAAAATTTA
1 TTTTTATATATTTAAAATTTA
106260099 TTTTTA-AT-TTTAAAAATTTA
1 TTTTTATATATTT-AAAATTTA
106260119 ATTAATTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.16
20 10 0.53
21 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTTATATATTTAAAATTTA
Found at i:106281002 original size:23 final size:23
Alignment explanation
Indices: 106280976--106281025 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
106280966 TGGAATGTAT
*
106280976 AACTTTTACCAATTACAATATCA
1 AACTTTTACCAAATACAATATCA
106280999 AACTTTTACCAAATACAATATCA
1 AACTTTTACCAAATACAATATCA
106281022 AACT
1 AACT
106281026 CAAGTATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (23 bp):
AACTTTTACCAAATACAATATCA
Found at i:106288826 original size:13 final size:14
Alignment explanation
Indices: 106288810--106288845 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
106288800 CAATCTCATA
106288810 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
106288823 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
106288836 TCTC-ATTTCA
1 TCTCAATTTCA
106288846 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:106288835 original size:18 final size:19
Alignment explanation
Indices: 106288797--106288837 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
106288787 TGGTTCATGT
106288797 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
106288816 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
106288834 TTTC
1 TTTC
106288838 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:106288972 original size:23 final size:23
Alignment explanation
Indices: 106288942--106289022 Score: 153
Period size: 23 Copynumber: 3.5 Consensus size: 23
106288932 GCGGATTCCT
106288942 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
*
106288965 CCCAAACACACCAGAATATTCAA
1 CCCAAACACACCAGAATATCCAA
106288988 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
106289011 CCCAAACACACC
1 CCCAAACACACC
106289023 CGGAATATTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.47, C:0.41, G:0.04, T:0.09
Consensus pattern (23 bp):
CCCAAACACACCAGAATATCCAA
Found at i:106289309 original size:8 final size:10
Alignment explanation
Indices: 106289280--106289320 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
106289270 ATTCTAATAA
*
106289280 TCACATATTT
1 TCACACATTT
106289290 TCACACATTT
1 TCACACATTT
106289300 TCACA-A-TT
1 TCACACATTT
*
106289308 TCATACATTT
1 TCACACATTT
106289318 TCA
1 TCA
106289321 TTCAATTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 6 0.22
9 2 0.07
10 19 0.70
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (10 bp):
TCACACATTT
Found at i:106289537 original size:15 final size:15
Alignment explanation
Indices: 106289513--106289563 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
106289503 TATATATTAT
106289513 AATTTCAATCAATATA
1 AATTT-AATCAATATA
* *
106289529 AATTTAATCAAAATG
1 AATTTAATCAATATA
*
106289544 ATTTTAATCAATATA
1 AATTTAATCAATATA
106289559 AATTT
1 AATTT
106289564 GATAAATTCA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
15 24 0.83
16 5 0.17
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (15 bp):
AATTTAATCAATATA
Found at i:106290333 original size:15 final size:15
Alignment explanation
Indices: 106290294--106290340 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 15
106290284 CCTGTTTATT
106290294 CTCTGTTTCGTTTCCA
1 CTCTGTTTC-TTTCCA
*
106290310 CGTTCTGTTTCTTTTCA
1 C--TCTGTTTCTTTCCA
106290327 CTCTGTTTCTTTCC
1 CTCTGTTTCTTTCC
106290341 TTTATTTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 12 0.44
16 1 0.04
17 6 0.22
18 8 0.30
ACGTcount: A:0.04, C:0.30, G:0.11, T:0.55
Consensus pattern (15 bp):
CTCTGTTTCTTTCCA
Found at i:106293624 original size:20 final size:20
Alignment explanation
Indices: 106293599--106293639 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
106293589 TTAAAAATAT
*
106293599 AAATTTAATATTTTTAAAAA
1 AAATTTAATATATTTAAAAA
*
106293619 AAATTTCATATATTTAAAAA
1 AAATTTAATATATTTAAAAA
106293639 A
1 A
106293640 TGTACCAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATTTAATATATTTAAAAA
Found at i:106294029 original size:75 final size:75
Alignment explanation
Indices: 106293906--106294056 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
106293896 TACCCCAATT
106293906 TTATTTACCATTAATCTCTTTAAACTTACCCTTTGTAAATCTAATATATATAAAATATTGTAAAG
1 TTATTTACCATTAATCTCTTTAAACTTACCCTTTGTAAATCTAATATATATAAAATATTGTAAAG
106293971 AATCCAACCA
66 AATCCAACCA
106293981 TTATTTACCATTAATCTCTTTAAACTTACCCTTTGTAAATCTAATATATATAAAATATTGTAAAG
1 TTATTTACCATTAATCTCTTTAAACTTACCCTTTGTAAATCTAATATATATAAAATATTGTAAAG
106294046 AATCCAACCA
66 AATCCAACCA
106294056 T
1 T
106294057 ACCATAAAGA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.39
Consensus pattern (75 bp):
TTATTTACCATTAATCTCTTTAAACTTACCCTTTGTAAATCTAATATATATAAAATATTGTAAAG
AATCCAACCA
Found at i:106295748 original size:8 final size:8
Alignment explanation
Indices: 106295726--106295765 Score: 62
Period size: 9 Copynumber: 4.8 Consensus size: 8
106295716 TTTAATCTCC
106295726 TTTAAAAA
1 TTTAAAAA
106295734 TTATAAAAA
1 TT-TAAAAA
106295743 TTTAAAAA
1 TTTAAAAA
106295751 TTATAAAAA
1 TT-TAAAAA
106295760 TTTAAA
1 TTTAAA
106295766 TTAGTAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 14 0.47
9 16 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TTTAAAAA
Found at i:106295748 original size:17 final size:17
Alignment explanation
Indices: 106295726--106295765 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
106295716 TTTAATCTCC
106295726 TTTAAAAATTATAAAAA
1 TTTAAAAATTATAAAAA
106295743 TTTAAAAATTATAAAAA
1 TTTAAAAATTATAAAAA
106295760 TTTAAA
1 TTTAAA
106295766 TTAGTAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTTAAAAATTATAAAAA
Found at i:106296120 original size:29 final size:29
Alignment explanation
Indices: 106296066--106296123 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
106296056 TTATAAGAAT
*
106296066 TGGATTAAATTAGTCACTCTATTATTAAA
1 TGGATTAAATTAGTCACTCTACTATTAAA
* *
106296095 TGGATTAATTTAGTC-CCCTTACTATTAAA
1 TGGATTAAATTAGTCACTC-TACTATTAAA
106296124 AATAATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (29 bp):
TGGATTAAATTAGTCACTCTACTATTAAA
Found at i:106296863 original size:29 final size:30
Alignment explanation
Indices: 106296831--106296895 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
106296821 TTATACTTTT
106296831 AAATTA-TTTTA-ATGACTTTTAATTTTTAA
1 AAATTACTTTTATAT-ACTTTTAATTTTTAA
**
106296860 AAATTACTTTTATATTTTTTTAATTTTTAA
1 AAATTACTTTTATATACTTTTAATTTTTAA
106296890 AAATTA
1 AAATTA
106296896 ACTAAATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 6 0.19
30 24 0.75
31 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (30 bp):
AAATTACTTTTATATACTTTTAATTTTTAA
Found at i:106296884 original size:20 final size:19
Alignment explanation
Indices: 106296824--106296884 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
106296814 CTTCTATTTA
*
106296824 TACTTTTAAATTATTTTAAT
1 TACTTTT-AATTTTTTTAAT
* **
106296844 GACTTTTAATTTTTAAAAAT
1 TACTTTTAATTTTT-TTAAT
106296864 TACTTTTATATTTTTTTAAT
1 TACTTTTA-ATTTTTTTAAT
106296884 T
1 T
106296885 TTTAAAAATT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
19 6 0.19
20 20 0.62
21 6 0.19
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (19 bp):
TACTTTTAATTTTTTTAAT
Found at i:106296905 original size:30 final size:30
Alignment explanation
Indices: 106296847--106296905 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
106296837 TTTTAATGAC
**
106296847 TTTTAATTTTTAAAAATTACTTTTATATTT
1 TTTTAATTTTTAAAAATTACTTAAATATTT
106296877 TTTTAATTTTTAAAAATTAAC-TAAATATT
1 TTTTAATTTTTAAAAATT-ACTTAAATATT
106296906 GATGTATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (30 bp):
TTTTAATTTTTAAAAATTACTTAAATATTT
Found at i:106298673 original size:57 final size:58
Alignment explanation
Indices: 106298596--106298746 Score: 179
Period size: 57 Copynumber: 2.7 Consensus size: 58
106298586 GGGTGGTCAG
* * * *
106298596 CAGTGGCTGCAC-CAG---CACCAGGGTTGGCAACATTGGGTCCTGTGGGAATGGGAC
1 CAGTGGCTGCACGCAGCCACACCAGGGTTGCCAACAGTAGGTCCTGTGGGAACGGGAC
* *
106298650 CAGTGGCTGCA-GCA-CCTACACCAGGGTTCCCAACAGTAGTTCCTGTGGGAACGGGAC
1 CAGTGGCTGCACGCAGCC-ACACCAGGGTTGCCAACAGTAGGTCCTGTGGGAACGGGAC
106298707 CAGTGGCTGCACCTGCAGCCACACCAGGGTTGCCAACAGT
1 CAGTGGCTGCA-C-GCAGCCACACCAGGGTTGCCAACAGT
106298747 GGCTCCAGTA
Statistics
Matches: 81, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
54 13 0.16
57 44 0.54
60 22 0.27
61 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (58 bp):
CAGTGGCTGCACGCAGCCACACCAGGGTTGCCAACAGTAGGTCCTGTGGGAACGGGAC
Found at i:106304398 original size:31 final size:31
Alignment explanation
Indices: 106304357--106304419 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
106304347 ATCATTGAAT
* *
106304357 TATTCTAAAGTTTTCATTTAAGTCACTAAAC
1 TATTCAAAAGTTTTCATTTAAGCCACTAAAC
*
106304388 TATTCAAAAGTTTTTATTTAAGCCACTAAAC
1 TATTCAAAAGTTTTCATTTAAGCCACTAAAC
106304419 T
1 T
106304420 GTCAGGGCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41
Consensus pattern (31 bp):
TATTCAAAAGTTTTCATTTAAGCCACTAAAC
Found at i:106307335 original size:16 final size:15
Alignment explanation
Indices: 106307295--106307344 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
106307285 AAAATTATAC
*
106307295 TTTTCATCCTTCTAA
1 TTTTCATCCTTCAAA
*
106307310 TTCTTTATCCATTCAAA
1 TT-TTCATCC-TTCAAA
*
106307327 TTTTCATCCTTCCAA
1 TTTTCATCCTTCAAA
106307342 TTT
1 TTT
106307345 CCTTTCTACT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 10 0.34
16 12 0.41
17 7 0.24
ACGTcount: A:0.22, C:0.26, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTTCATCCTTCAAA
Found at i:106310737 original size:3 final size:3
Alignment explanation
Indices: 106310729--106310757 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
106310719 GTGCTGATAA
106310729 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
106310758 TTTCAGTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:106316528 original size:19 final size:19
Alignment explanation
Indices: 106316506--106316549 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
106316496 AATTATTGAA
106316506 TTAATTGTT-AATTTTAATT
1 TTAATTGTTAAATTTTAA-T
106316525 TTAA-TGTTAAAATTTTAAT
1 TTAATTGTT-AAATTTTAAT
106316544 TTAATT
1 TTAATT
106316550 TTTTTAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TTAATTGTTAAATTTTAAT
Found at i:106316694 original size:25 final size:25
Alignment explanation
Indices: 106316665--106316717 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
106316655 AAATTTTATG
* *
106316665 AATCTTATCCTAAAAATTAATA-TAA
1 AATCTAAT-CTAAAAATAAATATTAA
*
106316690 AATCTAATTTAAAAATAAATATTAA
1 AATCTAATCTAAAAATAAATATTAA
106316715 AAT
1 AAT
106316718 ATTTCAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.36
Consensus pattern (25 bp):
AATCTAATCTAAAAATAAATATTAA
Found at i:106328426 original size:18 final size:17
Alignment explanation
Indices: 106328405--106328438 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
106328395 ATTTGATTAA
106328405 ATAAATTATTAAAAATTT
1 ATAAATT-TTAAAAATTT
106328423 ATAAATTTTAAAAATT
1 ATAAATTTTAAAAATT
106328439 ATTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAAATTTTAAAAATTT
Found at i:106330858 original size:15 final size:17
Alignment explanation
Indices: 106330833--106330866 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
106330823 ATAGAAATAT
106330833 AATATAATA-TTAAAAA
1 AATATAATATTTAAAAA
106330849 AATA-AATATTTAAAAA
1 AATATAATATTTAAAAA
106330865 AA
1 AA
106330867 GAGACTCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATATAATATTTAAAAA
Found at i:106346693 original size:104 final size:105
Alignment explanation
Indices: 106346513--106346780 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
106346503 TAACCGTTAT
* **
106346513 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
106346578 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
106346617 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
106346682 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
106346722 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
106346781 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.53
105 71 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:106347149 original size:30 final size:30
Alignment explanation
Indices: 106347115--106347172 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
106347105 CCACCCAACT
106347115 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
*** * *
106347145 TTTTGCGTAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
106347173 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:106352610 original size:15 final size:14
Alignment explanation
Indices: 106352578--106352624 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 14
106352568 AAGTTGTGAA
106352578 TTTAATTTATATTT
1 TTTAATTTATATTT
106352592 TTTAATTTGATCA-TT
1 TTTAATTT-AT-ATTT
106352607 TTTAATTTTATACTTT
1 TTTAA-TTTATA-TTT
106352623 TT
1 TT
106352625 CAAATTTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 9 0.32
15 11 0.39
16 8 0.29
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (14 bp):
TTTAATTTATATTT
Found at i:106355702 original size:16 final size:16
Alignment explanation
Indices: 106355681--106355732 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
106355671 TTTGGTTCGC
106355681 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
106355697 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
*
106355713 TGTATTGGATTAGAGT
1 TGTATTGGATTAGAGG
106355729 TGTA
1 TGTA
106355733 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:106355972 original size:15 final size:15
Alignment explanation
Indices: 106355943--106355986 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
106355933 AATTTAATCA
*
106355943 TATTTAATATAATTAT
1 TATTAAATAT-ATTAT
106355959 TATTAAATATATTAT
1 TATTAAATATATTAT
*
106355974 AATTAAAATATAT
1 TATT-AAATATAT
106355987 AATTTAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAAATATATTAT
Found at i:106355993 original size:14 final size:15
Alignment explanation
Indices: 106355948--106355995 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
106355938 AATCATATTT
*
106355948 AATATAATTATTATTA
1 AATAT-ATTATAATTA
106355964 AATATATTATAATTA
1 AATATATTATAATTA
*
106355979 AA-ATA-TATAATTT
1 AATATATTATAATTA
106355992 AATA
1 AATA
106355996 AAATTCTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 9 0.31
14 4 0.14
15 11 0.38
16 5 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATATTATAATTA
Found at i:106356305 original size:24 final size:27
Alignment explanation
Indices: 106356254--106356306 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
106356244 TATATGTAAT
*
106356254 ATTATTAAAATAATATTTTTTATTTTA
1 ATTATTAAAATAATATTTTTTATATTA
*
106356281 ATTATTTAAA-AATA-TTTTTA-ATTA
1 ATTATTAAAATAATATTTTTTATATTA
106356305 AT
1 AT
106356307 GCAGTGTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 6 0.25
26 4 0.17
27 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
ATTATTAAAATAATATTTTTTATATTA
Found at i:106360395 original size:3 final size:3
Alignment explanation
Indices: 106360374--106360422 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
106360364 CTATAAAATA
* *
106360374 ATT ATT ATC ATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
106360422 A
1 A
106360423 CAAATGTTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:106362036 original size:11 final size:11
Alignment explanation
Indices: 106362015--106362066 Score: 70
Period size: 11 Copynumber: 4.8 Consensus size: 11
106362005 ATTTTACTGT
106362015 TATTTT-TTAC
1 TATTTTATTAC
*
106362025 TATTTTACTAC
1 TATTTTATTAC
*
106362036 TATTTTATTAT
1 TATTTTATTAC
*
106362047 TATTTTGTTAC
1 TATTTTATTAC
106362058 TATTTTATT
1 TATTTTATT
106362067 GTTATTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 6 0.17
11 29 0.83
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (11 bp):
TATTTTATTAC
Found at i:106362058 original size:22 final size:22
Alignment explanation
Indices: 106362003--106362072 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
106361993 TGTTTTCCTT
**
106362003 TTATTTTACTGTTATTTT-TTA
1 TTATTTTACTACTATTTTATTA
*
106362024 CTATTTTACTACTATTTTATTA
1 TTATTTTACTACTATTTTATTA
** *
106362046 TTATTTTGTTACTATTTTATTG
1 TTATTTTACTACTATTTTATTA
106362068 TTATT
1 TTATT
106362073 ATTTGAATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
21 15 0.37
22 26 0.63
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.67
Consensus pattern (22 bp):
TTATTTTACTACTATTTTATTA
Found at i:106362072 original size:11 final size:11
Alignment explanation
Indices: 106362003--106362072 Score: 61
Period size: 11 Copynumber: 6.5 Consensus size: 11
106361993 TGTTTTCCTT
* *
106362003 TTATTTTACTG
1 TTATTTTATTA
106362014 TTATTTT-TTA
1 TTATTTTATTA
* *
106362024 CTATTTTACTA
1 TTATTTTATTA
*
106362035 CTATTTTATTA
1 TTATTTTATTA
*
106362046 TTATTTTGTTA
1 TTATTTTATTA
* *
106362057 CTATTTTATTG
1 TTATTTTATTA
106362068 TTATT
1 TTATT
106362073 ATTTGAATAT
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
10 7 0.15
11 40 0.85
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.67
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:106362083 original size:22 final size:22
Alignment explanation
Indices: 106362036--106362083 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
106362026 ATTTTACTAC
* *
106362036 TATTTTATTATTATTTTGTTAC
1 TATTTTATTATTATTTTGTGAA
*
106362058 TATTTTATTGTTATTATT-TGAA
1 TATTTTATTATTATT-TTGTGAA
106362080 TATT
1 TATT
106362084 GTATAACTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (22 bp):
TATTTTATTATTATTTTGTGAA
Found at i:106362218 original size:23 final size:23
Alignment explanation
Indices: 106362192--106362236 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
106362182 ATTGAAAATA
106362192 TTTATT-TTAATTTTTTAATATAT
1 TTTATTCTT-ATTTTTTAATATAT
*
106362215 TTTATTCTTATTTTTTTATATA
1 TTTATTCTTATTTTTTAATATA
106362237 AAAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTATTCTTATTTTTTAATATAT
Found at i:106371249 original size:31 final size:31
Alignment explanation
Indices: 106371186--106371249 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
106371176 AAATTTCCAA
* *
106371186 AATTTGAAAAGTACAAAAATAAAAATTGATC
1 AATTTGAAAAATACAAAAATAAAAATTAATC
* * *
106371217 AATTTGAAAAATACAAATATTAGAATTAATC
1 AATTTGAAAAATACAAAAATAAAAATTAATC
106371248 AA
1 AA
106371250 ATAAGAGTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (31 bp):
AATTTGAAAAATACAAAAATAAAAATTAATC
Found at i:106374025 original size:25 final size:26
Alignment explanation
Indices: 106373976--106374025 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
106373966 ACAAATAATT
*
106373976 AAAAATTATAATAAAAATTTAAAAAC
1 AAAAATTATAATAAAAATTCAAAAAC
106374002 AAAAATTAT-AT-AAAATTCATAAAA
1 AAAAATTATAATAAAAATTCA-AAAA
106374026 AATTAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
25 6 0.27
26 9 0.41
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (26 bp):
AAAAATTATAATAAAAATTCAAAAAC
Found at i:106375071 original size:19 final size:21
Alignment explanation
Indices: 106375033--106375072 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
106375023 GGTTAGAATA
*
106375033 TTTTATAAGTTATTGTAATTT
1 TTTTATAAATTATTGTAATTT
106375054 TTTTATAAATT-TTG-AATTT
1 TTTTATAAATTATTGTAATTT
106375073 AGTACTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 3 0.17
21 10 0.56
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
TTTTATAAATTATTGTAATTT
Found at i:106380803 original size:21 final size:20
Alignment explanation
Indices: 106380769--106380817 Score: 82
Period size: 21 Copynumber: 2.5 Consensus size: 20
106380759 TAAGTGATAC
106380769 TTTAA-TTTATTTATGCAAA
1 TTTAATTTTATTTATGCAAA
106380788 TTTAATTTTCATTTATGCAAA
1 TTTAATTTT-ATTTATGCAAA
106380809 TTTAATTTT
1 TTTAATTTT
106380818 TTAAATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 5 0.18
20 3 0.11
21 20 0.71
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (20 bp):
TTTAATTTTATTTATGCAAA
Found at i:106380812 original size:35 final size:35
Alignment explanation
Indices: 106380772--106380839 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
106380762 GTGATACTTT
*
106380772 AATTT-ATTTATGCAAATTTAATTTTCATTTATGCA
1 AATTTAATTT-TGCAAATTTAATTTTCAGTTATGCA
**
106380807 AATTTAATTTTTTAAATTTAATTTTCAGTTATG
1 AATTTAATTTTGCAAATTTAATTTTCAGTTATG
106380840 ATGTTTGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 25 0.86
36 4 0.14
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (35 bp):
AATTTAATTTTGCAAATTTAATTTTCAGTTATGCA
Found at i:106382411 original size:30 final size:30
Alignment explanation
Indices: 106382344--106382411 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
106382334 GACGACGATG
* * *
106382344 CAGGCCCATCAACAGTGCCCATACAATCAT
1 CAGGCCCATCAACAGCGCCCACACAATCAC
*
106382374 CAAGCCCATCAACAGCG-CCACCACAATCAC
1 CAGGCCCATCAACAGCGCCCA-CACAATCAC
*
106382404 CGGGCCCA
1 CAGGCCCA
106382412 ACAGTTCAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.32, C:0.43, G:0.15, T:0.10
Consensus pattern (30 bp):
CAGGCCCATCAACAGCGCCCACACAATCAC
Found at i:106382489 original size:18 final size:18
Alignment explanation
Indices: 106382468--106382510 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
106382458 AGTCAGGTAC
*
106382468 GTATCCTATCCCTTATAT
1 GTATCCTAACCCTTATAT
*
106382486 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
*
106382504 GTTTCCT
1 GTATCCT
106382511 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.07, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:106386450 original size:21 final size:21
Alignment explanation
Indices: 106386412--106386459 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
106386402 AATATTTTTC
*
106386412 TTTAAATTTGAATAGTTGATAT
1 TTTAAATTTGAATAGTTG-TAA
106386434 TTTAATATTT-AA-AGTTGTAA
1 TTTAA-ATTTGAATAGTTGTAA
106386454 TTTAAA
1 TTTAAA
106386460 ATTAATATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 7 0.29
21 5 0.21
22 7 0.29
23 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (21 bp):
TTTAAATTTGAATAGTTGTAA
Found at i:106386485 original size:16 final size:18
Alignment explanation
Indices: 106386464--106386498 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
106386454 TTTAAAATTA
106386464 ATATTC-AA-TTAATAAT
1 ATATTCAAATTTAATAAT
106386480 ATATTCAAATTTAATAAT
1 ATATTCAAATTTAATAAT
106386498 A
1 A
106386499 GTAAACTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 2 0.12
18 9 0.53
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (18 bp):
ATATTCAAATTTAATAAT
Found at i:106404065 original size:21 final size:21
Alignment explanation
Indices: 106404033--106404073 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
106404023 GAACATTTGG
106404033 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
106404054 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
106404074 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:106416863 original size:58 final size:58
Alignment explanation
Indices: 106416794--106416910 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
106416784 ACTTGAACTA
106416794 AATCGAATCTGTTACCATATAGACAATCCATGTTATCCAAATCTGGGACAAATCGAAT
1 AATCGAATCTGTTACCATATAGACAATCCATGTTATCCAAATCTGGGACAAATCGAAT
106416852 AATCGAATCTGTTACCATATAGACAATCCATGTTATCCAAATCTGGGACAAATCGAAT
1 AATCGAATCTGTTACCATATAGACAATCCATGTTATCCAAATCTGGGACAAATCGAAT
106416910 A
1 A
106416911 CCGGTACATT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (58 bp):
AATCGAATCTGTTACCATATAGACAATCCATGTTATCCAAATCTGGGACAAATCGAAT
Found at i:106423639 original size:236 final size:235
Alignment explanation
Indices: 106422968--106423670 Score: 1100
Period size: 226 Copynumber: 3.0 Consensus size: 235
106422958 AAAGAGTTGT
* * *
106422968 GTGCTATATATAGAGAGGTTGATATGCAGTAAGCAAGGGCCATAGAGAAGTGGAATGGTCAATGC
1 GTGCTATATATAGAGAGGTTAATATGCAGTAAACAAGGGCCACAGAGAAGTGGAATGGTC-ATGC
* * * *
106423033 TATAGTAAATAAGTCTTGGTGATTTACGAGGGTGATACTTCCTAATGATCTATATATCGACCACT
65 --TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACT
*
106423098 GGCCTCCAACATTTGTCCAGGAACTGATAATTAATGCTAATAATTACTGTCTTGAGAATTCAATA
128 GGCCTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGAGAATTCAATA
106423163 ATCGATAATTATCTCTTATTTACTTATGAGGTTACATATATCA
193 ATCGATAATTATCTCTTATTTACTTATGAGGTTACATATATCA
*
106423206 GTGCTATATATATAGAGGTTAATATGCAGTAAACAAGGGCCACAGAGAAGTGG-A-----ATG--
1 GTGCTATATATAGAGAGGTTAATATGCAGTAAACAAGGGCCACAGAGAAGTGGAATGGTCATGCT
*
106423263 -GTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATGTATCTACAACTGGC
66 AGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACTGGC
* * * *
106423327 CTCTAACATTTGACTAGGAACTGATAACTAATGCTAATAATTTCTGTCTTGAGAATTCAATAATC
131 CTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGAGAATTCAATAATC
* *
106423392 GATAATTATCTCTTATTTACTTGTGAGGTTAAATATATCA
196 GATAATTATCTCTTATTTACTTATGAGGTTACATATATCA
*
106423432 GTGCTATATATAGAGAGGTTAATATGCAGTAACCAAGGGCCACAGAGAAGTGGAATGGTCAGTGC
1 GTGCTATATATAGAGAGGTTAATATGCAGTAAACAAGGGCCACAGAGAAGTGGAATGGTCA-TGC
*
106423497 TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTAAAACTGG
65 TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACTGG
* * *
106423562 CCTCCAACATTTGTCCAGGAACTGATAACTAATGTTGATAATTACTGTCTTGAGACTTCAATAAT
130 CCTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGAGAATTCAATAAT
* *
106423627 TGATAATTATCTCTTATTTACTTATGAGGTTACATATATAA
195 CGATAATTATCTCTTATTTACTTATGAGGTTACATATATCA
106423668 GTG
1 GTG
106423671 ATTTGAGCTT
Statistics
Matches: 424, Mismatches: 31, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
226 208 0.49
227 1 0.00
231 3 0.01
232 1 0.00
233 2 0.00
236 159 0.38
237 1 0.00
238 49 0.12
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (235 bp):
GTGCTATATATAGAGAGGTTAATATGCAGTAAACAAGGGCCACAGAGAAGTGGAATGGTCATGCT
AGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACTGGC
CTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGAGAATTCAATAATC
GATAATTATCTCTTATTTACTTATGAGGTTACATATATCA
Found at i:106432593 original size:14 final size:14
Alignment explanation
Indices: 106432556--106432582 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
106432546 CGAGCAAAAG
106432556 AAAAGAAGAAGAAA
1 AAAAGAAGAAGAAA
106432570 AAAAGAAGAAGAA
1 AAAAGAAGAAGAA
106432583 GCAATGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (14 bp):
AAAAGAAGAAGAAA
Found at i:106442219 original size:20 final size:20
Alignment explanation
Indices: 106442183--106442221 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
106442173 CAACTTTAAA
*
106442183 TAATAGAAATAGATAATTTT
1 TAATAGAAATAAATAATTTT
106442203 TAATAGAAA-AAACTAATTT
1 TAATAGAAATAAA-TAATTT
106442222 ACTACTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
TAATAGAAATAAATAATTTT
Found at i:106448665 original size:30 final size:31
Alignment explanation
Indices: 106448625--106448683 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
106448615 AGTGTTAGGA
* *
106448625 GTAACTGTCTTACGGTTAGT-TGGTTAGCTTT
1 GTAACTGTCTT-CAGTTAGTATAGTTAGCTTT
106448656 GTAAC-GTCTTCAGTTAGTATAGTTAGCT
1 GTAACTGTCTTCAGTTAGTATAGTTAGCT
106448684 GTTAGCTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.28
30 13 0.52
31 5 0.20
ACGTcount: A:0.20, C:0.14, G:0.24, T:0.42
Consensus pattern (31 bp):
GTAACTGTCTTCAGTTAGTATAGTTAGCTTT
Found at i:106454776 original size:22 final size:21
Alignment explanation
Indices: 106454746--106454792 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
106454736 TACAAATTAA
106454746 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
106454768 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
106454789 ATCT
1 ATCT
106454793 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:106454798 original size:19 final size:19
Alignment explanation
Indices: 106454763--106454841 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
106454753 AGATTACAAG
106454763 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
106454784 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
106454801 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
106454820 ATTATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
106454839 ATC
1 ATC
106454842 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 17 0.31
19 28 0.52
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:106454818 original size:36 final size:38
Alignment explanation
Indices: 106454763--106454835 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
106454753 AGATTACAAG
106454763 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
*
106454801 ATCATATC-T-AAGATTGCATATTATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
106454836 CATATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 1 0.03
38 8 0.24
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:106454850 original size:36 final size:35
Alignment explanation
Indices: 106454764--106454851 Score: 108
Period size: 36 Copynumber: 2.4 Consensus size: 35
106454754 GATTACAAGA
106454764 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
*
106454800 TATCATATC-TAAGATTGCATATTATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
106454836 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
106454852 ATATTTCCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 31 0.67
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:106458030 original size:13 final size:14
Alignment explanation
Indices: 106458014--106458051 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
106458004 CTTTATCAAA
*
106458014 CATATTTCATAT-T
1 CATAATTCATATGT
106458027 CATAATTCATATGT
1 CATAATTCATATGT
106458041 CATAATCTCAT
1 CATAAT-TCAT
106458052 GCTTCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.50
14 7 0.32
15 4 0.18
ACGTcount: A:0.34, C:0.18, G:0.03, T:0.45
Consensus pattern (14 bp):
CATAATTCATATGT
Found at i:106458635 original size:48 final size:47
Alignment explanation
Indices: 106458532--106458821 Score: 278
Period size: 48 Copynumber: 6.0 Consensus size: 47
106458522 TCGTTTTCTA
* **
106458532 GATGCCATAGCCCAGCTATGGTTTTACACATAATCACATATCACATATT
1 GATGCCATAGCCCAGCTATGGTCTTACAC-GGATCACATATCACATA-T
*
106458581 GATGCCATAGCCCAGCTATGGTCTTACACGGATCACATAACACATAT
1 GATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATAT
* * *
106458628 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCA-CT
1 -GATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATAT
* * * * * * *
106458675 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACA-CT
1 GATGCCATAGCCCAGCTATGGTCTTACAC-GGATCACATATCACATAT
* * * *
106458722 GATGCCATATCCCAGATATGGTCTTATACGGAAGCACATAATCACATCTATT
1 GATGCCATAGCCCAGCTATGGTCTTACACGG-ATCACAT-ATCACA--TA-T
* *
106458774 CGATGCCATAGCCCAGCTATGGTTTTATACGGAAATCACATATCACAT
1 -GATGCCATAGCCCAGCTATGGTCTTACACGG--ATCACATATCACAT
106458822 GTTGCCATGG
Statistics
Matches: 209, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
46 27 0.13
47 50 0.24
48 61 0.29
49 28 0.13
51 1 0.00
52 1 0.00
53 34 0.16
54 7 0.03
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (47 bp):
GATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATAT
Found at i:106458760 original size:94 final size:94
Alignment explanation
Indices: 106458532--106458806 Score: 239
Period size: 94 Copynumber: 2.8 Consensus size: 94
106458522 TCGTTTTCTA
* * * * * * *
106458532 GATGCCATAGCCCAGCTATGGTTTTACACATAATCACATATCACATATTGATGCCATAGCCCAGC
1 GATGCCATAGCCCAGATATGGTCTTACAC-GAAGCACATATCTC--ACTGATGCCATAGCCCAGA
*
106458597 TATGGTCTTACACGGATCACATAACACATATC
63 TATGGTCTTACACGGAGCACATAACACATATC
* * *
106458629 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACTGATGCCATATCCCAGATAT
1 GATGCCATAGCCCAGATATGGTCTTACACGAAGCACATATCTCACTGATGCCATAGCCCAGATAT
* * * * *
106458694 GGTCTTATACAGTAGCATATATCACA-CT-
66 GGTCTTACAC-GGAGCACATAACACATATC
* * *
106458722 GATGCCATATCCCAGATATGGTCTTATACGGAAGCACATAATCACATCTATTCGATGCCATAGCC
1 GATGCCATAGCCCAGATATGGTCTTACAC-GAAGCACAT-AT--C-TC-ACT-GATGCCATAGCC
* * *
106458787 CAGCTATGGTTTTATACGGA
59 CAGATATGGTCTTACACGGA
106458807 AATCACATAT
Statistics
Matches: 149, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
93 26 0.17
94 37 0.25
95 13 0.09
96 12 0.08
97 29 0.19
98 2 0.01
99 4 0.03
100 26 0.17
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (94 bp):
GATGCCATAGCCCAGATATGGTCTTACACGAAGCACATATCTCACTGATGCCATAGCCCAGATAT
GGTCTTACACGGAGCACATAACACATATC
Found at i:106476083 original size:11 final size:11
Alignment explanation
Indices: 106476067--106476095 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
106476057 AGGTCTTTGG
106476067 ATGCATATGTT
1 ATGCATATGTT
106476078 ATGCATATGTT
1 ATGCATATGTT
106476089 ATGCATA
1 ATGCATA
106476096 AGTACCAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.41
Consensus pattern (11 bp):
ATGCATATGTT
Found at i:106492601 original size:19 final size:19
Alignment explanation
Indices: 106492577--106492614 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
106492567 GGATTTTCTA
106492577 AAAATACTAAAAAAAATTT
1 AAAATACTAAAAAAAATTT
* *
106492596 AAAATATTAAAAAATATTT
1 AAAATACTAAAAAAAATTT
106492615 TTTATGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATACTAAAAAAAATTT
Found at i:106492625 original size:21 final size:21
Alignment explanation
Indices: 106492601--106492658 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
106492591 AATTTAAAAT
* * *
106492601 ATTAAAAAATATTTTTTATGA
1 ATTAAAAAATATATTATATAA
* *
106492622 ATTATAAATTATATTATATAA
1 ATTAAAAAATATATTATATAA
106492643 ATT-AAAAATAATATTA
1 ATTAAAAAAT-ATATTA
106492659 AAAGTACCTG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTAAAAAATATATTATATAA
Found at i:106498442 original size:2 final size:2
Alignment explanation
Indices: 106498435--106498471 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
106498425 CTACACATAA
* *
106498435 AT AT AT AT AT GT AT AT AT AT AT GT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106498472 AAGAAATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:106498452 original size:12 final size:12
Alignment explanation
Indices: 106498435--106498468 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
106498425 CTACACATAA
106498435 ATATATATATGT
1 ATATATATATGT
106498447 ATATATATATGT
1 ATATATATATGT
106498459 ATATATATAT
1 ATATATATAT
106498469 ATAAAGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (12 bp):
ATATATATATGT
Found at i:106501219 original size:87 final size:87
Alignment explanation
Indices: 106501073--106501232 Score: 266
Period size: 87 Copynumber: 1.8 Consensus size: 87
106501063 TTCCAGCCTA
* * * *
106501073 TTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCGATCTGTTTCCCTTCTACTTAGGGGTT
1 TTACCCTACTGCTTAAGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTACTTAGGGGGT
106501138 TAAGATCTGTAAATTCAGCTTG
66 TAAGATCTGTAAATTCAGCTTG
* *
106501160 TTACCCTACTGCTTAAGGGGTTAAAGCCCATCATCTTCGATTTGTTTCCCTACTGCTTAGGGGGT
1 TTACCCTACTGCTTAAGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTACTTAGGGGGT
106501225 TAAGATCT
66 TAAGATCT
106501233 ATAATCTTCG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 67 1.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (87 bp):
TTACCCTACTGCTTAAGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTACTTAGGGGGT
TAAGATCTGTAAATTCAGCTTG
Found at i:106501240 original size:44 final size:44
Alignment explanation
Indices: 106501076--106501242 Score: 151
Period size: 44 Copynumber: 3.8 Consensus size: 44
106501066 CAGCCTATTA
* * *
106501076 CCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGACCCATAATCTTCGATTTGTTT
* * * * ** * * *
106501120 CCCTTCTACTTAGGGGTTTAAGATCTGTAA-ATTC-AGCTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCCATAATCTTCGA-TTTGTTT
* *
106501163 CCCTACTGCTTAAGGGGTTAA-AGCCCATCATCTTCGATTTGTTT
1 CCCTACTGCTTAGGGGGTTAAGA-CCCATAATCTTCGATTTGTTT
* *
106501207 CCCTACTGCTTAGGGGGTTAAGATCTATAATCTTCG
1 CCCTACTGCTTAGGGGGTTAAGACCCATAATCTTCG
106501243 GCCTACTCCA
Statistics
Matches: 91, Mismatches: 27, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
42 2 0.02
43 27 0.30
44 60 0.66
45 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGACCCATAATCTTCGATTTGTTT
Found at i:106501749 original size:66 final size:66
Alignment explanation
Indices: 106501643--106501773 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 66
106501633 TATGCTTATG
* * *
106501643 TCAAATGATTAGGATGGTATGATCGAAATGAATCAAATGCTCCTAACTAGACGTGTTATGAATGA
1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGACGTGTTATGAATGA
106501708 A
66 A
* *
106501709 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTGTTATGAATGA
1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGACGTGTTATGAATGA
106501774 TGTATGAATG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (66 bp):
TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGACGTGTTATGAATGA
A
Found at i:106505171 original size:31 final size:31
Alignment explanation
Indices: 106505136--106505202 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
106505126 CTTCCTGCAT
*
106505136 TAAAATCCAACCAAATACAACAAATATAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * * *
106505167 TAAAATGCAGCCAAAAACAGCAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
106505198 TAAAA
1 TAAAA
106505203 ATATAACTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.57, C:0.19, G:0.07, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:106505469 original size:21 final size:21
Alignment explanation
Indices: 106505445--106505494 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
106505435 TCTGCTACCA
*
106505445 TCGCTGTTGCCGCTGCCTCCC
1 TCGCTGCTGCCGCTGCCTCCC
106505466 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTGCTGCCGCTGCCTCCC
*
106505487 TCTCTGCT
1 TCGCTGCT
106505495 ACCTCCGCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.22, T:0.30
Consensus pattern (21 bp):
TCGCTGCTGCCGCTGCCTCCC
Found at i:106505941 original size:13 final size:14
Alignment explanation
Indices: 106505914--106505942 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
106505904 TGATGAGTTG
106505914 AATTAAACAATTAT
1 AATTAAACAATTAT
106505928 AATTAAAC-ATTAT
1 AATTAAACAATTAT
106505941 AA
1 AA
106505943 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:106506146 original size:16 final size:17
Alignment explanation
Indices: 106506109--106506147 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
106506099 AAAATATTAT
*
106506109 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
106506126 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
106506142 TTAATA
1 TTAATA
106506148 AAATTATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:106511163 original size:9 final size:9
Alignment explanation
Indices: 106511149--106511428 Score: 181
Period size: 9 Copynumber: 30.6 Consensus size: 9
106511139 TATTTAAGTA
106511149 TTATGTAAG
1 TTATGTAAG
106511158 TTATGTAAG
1 TTATGTAAG
*
106511167 TTATGATATG
1 TTATG-TAAG
* * *
106511177 ATATAT-AT
1 TTATGTAAG
*
106511185 TTATGTAAA
1 TTATGTAAG
*
106511194 TTATAT-A-
1 TTATGTAAG
*
106511201 TTAATCTAAG
1 TT-ATGTAAG
*
106511211 TTATATAAG
1 TTATGTAAG
106511220 TTATGTAAG
1 TTATGTAAG
*
106511229 TTTTGTAAG
1 TTATGTAAG
*
106511238 TTATGTAAA
1 TTATGTAAG
*
106511247 TTATGATATAAAA
1 TTATG---T-AAG
* *
106511260 TATATTTAACTA
1 T-TATGTAA--G
106511272 TTATGTAAG
1 TTATGTAAG
106511281 TTATGTAAG
1 TTATGTAAG
* *
106511290 TTATATATG
1 TTATGTAAG
*
106511299 TTATATAAG
1 TTATGTAAG
106511308 TTATGTAAG
1 TTATGTAAG
* *
106511317 TTATATATG
1 TTATGTAAG
*
106511326 TTATATAAG
1 TTATGTAAG
*
106511335 TTATGTATG
1 TTATGTAAG
*
106511344 TTATATAAG
1 TTATGTAAG
106511353 TTATGTAAG
1 TTATGTAAG
*
106511362 TTATATAAG
1 TTATGTAAG
* *
106511371 TTATAT-AT
1 TTATGTAAG
*
106511379 TTATCTAAG
1 TTATGTAAG
*
106511388 TTATATAAG
1 TTATGTAAG
*
106511397 TTATGTACG
1 TTATGTAAG
*
106511406 TTTTGTAAG
1 TTATGTAAG
* *
106511415 TTATATAAA
1 TTATGTAAG
106511424 TTATG
1 TTATG
106511429 ATATCAAATA
Statistics
Matches: 215, Mismatches: 43, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
7 2 0.01
8 14 0.07
9 172 0.80
10 10 0.05
11 7 0.03
12 3 0.01
13 4 0.02
14 3 0.01
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:106511230 original size:18 final size:18
Alignment explanation
Indices: 106511149--106511428 Score: 208
Period size: 18 Copynumber: 15.3 Consensus size: 18
106511139 TATTTAAGTA
*
106511149 TTATGTAAGTTATGTAAG
1 TTATGTAAGTTATATAAG
* * *
106511167 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
*
106511185 TTATGTAAATTATAT-A-
1 TTATGTAAGTTATATAAG
*
106511201 TTAATCTAAGTTATATAAG
1 TT-ATGTAAGTTATATAAG
* *
106511220 TTATGTAAGTTTTGTAAG
1 TTATGTAAGTTATATAAG
* *
106511238 TTATGTAAATTATGATATAAAA
1 TTATGT-AAGT-T-ATAT-AAG
* * *
106511260 TATATTTAACTATTATGTAAG
1 T-TATGTAA--GTTATATAAG
*
106511281 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* *
106511299 TTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAG
* *
106511317 TTATATATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
106511335 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
106511353 TTATGTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* * *
106511371 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
* * *
106511388 TTATATAAGTTATGTACG
1 TTATGTAAGTTATATAAG
* *
106511406 TTTTGTAAGTTATATAAA
1 TTATGTAAGTTATATAAG
106511424 TTATG
1 TTATG
106511429 ATATCAAATA
Statistics
Matches: 207, Mismatches: 43, Indels: 24
0.76 0.16 0.09
Matches are distributed among these distances:
16 2 0.01
17 34 0.16
18 133 0.64
19 12 0.06
20 7 0.03
21 5 0.02
22 8 0.04
23 5 0.02
24 1 0.00
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:106511553 original size:15 final size:15
Alignment explanation
Indices: 106511533--106511588 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
106511523 AAGTAGCGGG
106511533 ATTAAATAATATTTA
1 ATTAAATAATATTTA
106511548 ATTAAATAATATTT-
1 ATTAAATAATATTTA
106511562 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
106511577 ATTAAATAATAT
1 ATTAAATAATAT
106511589 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:106511789 original size:24 final size:24
Alignment explanation
Indices: 106511762--106511832 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
106511752 TTAACTTAAA
106511762 TGATAAAACGGACGATAATATTTG
1 TGATAAAACGGACGATAATATTTG
*
106511786 TGATAAAACAGA-GAATAATATTTG
1 TGATAAAACGGACG-ATAATATTTG
*
106511810 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGACGATAATATTT
106511833 CAATAATAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
23 1 0.02
24 40 0.95
25 1 0.02
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (24 bp):
TGATAAAACGGACGATAATATTTG
Found at i:106511982 original size:64 final size:64
Alignment explanation
Indices: 106511880--106512013 Score: 232
Period size: 64 Copynumber: 2.1 Consensus size: 64
106511870 ATATTTTATT
* **
106511880 AAATATTTGTATATTAGATGGGACATATTATATTAATAAATAAATTTATTGCAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
*
106511944 AAATATTTGTATATTAGATTGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
106512008 AAATAT
1 AAATAT
106512014 AGAATTATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.45, C:0.04, G:0.12, T:0.39
Consensus pattern (64 bp):
AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
Found at i:106514467 original size:16 final size:16
Alignment explanation
Indices: 106514446--106514480 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
106514436 TTTATTTAAT
106514446 ATATAAA-TAAAAAACA
1 ATATAAATTAAAAAA-A
106514462 ATATAAATTAAAAAAA
1 ATATAAATTAAAAAAA
106514478 ATA
1 ATA
106514481 AGTTATATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
ATATAAATTAAAAAAA
Found at i:106514637 original size:16 final size:16
Alignment explanation
Indices: 106514595--106514643 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
106514585 TACATAAAAT
*
106514595 TTAAAATCTTGAAAATTA
1 TTAAAAT-TTG-AAATCA
106514613 TTGAAAATTTGAAATCA
1 TT-AAAATTTGAAATCA
106514630 TTAAAATTTGAAAT
1 TTAAAATTTGAAAT
106514644 TATTTAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 12 0.41
17 7 0.24
18 5 0.17
19 5 0.17
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.39
Consensus pattern (16 bp):
TTAAAATTTGAAATCA
Done.