Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 326 of 344
Found at i:106514854 original size:73 final size:72
Alignment explanation
Indices: 106514770--106514937 Score: 228
Period size: 73 Copynumber: 2.3 Consensus size: 72
106514760 AAACCCTTAA
* * *
106514770 CCCCTATCCCCTTAACCCCTAAACCATTAACCCTTAATCCCTAAAATTTAAACACTAAACCTTAA
1 CCCCTAACCCCTTAACCCCTAAACCATAAACCCTTAATCCCTAAAATTTAAACACTAAACCCTAA
106514835 ACAATAT
66 ACAATAT
* * * * *
106514842 CCCCCTAACCCCTAAACCCTTAAACCCTAAACCCTTAATCCCTAGACTTTAAACACTAAACCCTA
1 -CCCCTAACCCCTTAACCCCTAAACCATAAACCCTTAATCCCTAAAATTTAAACACTAAACCCTA
*
106514907 AACTATAT
65 AACAATAT
*
106514915 CCCCTCAACCCCTTAACTCCTAA
1 CCCCT-AACCCCTTAACCCCTAA
106514938 CATTTGACCC
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
72 5 0.06
73 77 0.94
ACGTcount: A:0.36, C:0.39, G:0.01, T:0.24
Consensus pattern (72 bp):
CCCCTAACCCCTTAACCCCTAAACCATAAACCCTTAATCCCTAAAATTTAAACACTAAACCCTAA
ACAATAT
Found at i:106514871 original size:15 final size:15
Alignment explanation
Indices: 106514759--106514909 Score: 76
Period size: 15 Copynumber: 10.3 Consensus size: 15
106514749 CTAATTATCC
* *
106514759 TAAACCCTTAACCCC
1 TAAACCCTAAACCCT
** * *
106514774 TATCCCCTTAACCCC
1 TAAACCCTAAACCCT
* *
106514789 TAAACCATTAACCCT
1 TAAACCCTAAACCCT
* **
106514804 TAATCCCTAAA-ATT
1 TAAACCCTAAACCCT
*
106514818 TAAACACTAAA-CCT
1 TAAACCCTAAACCCT
** ** *
106514832 TAAACAATATCCCCC
1 TAAACCCTAAACCCT
*
106514847 TAACCCCTAAACCCT
1 TAAACCCTAAACCCT
106514862 TAAACCCTAAACCCT
1 TAAACCCTAAACCCT
* * *
106514877 TAATCCCTAGA-CTT
1 TAAACCCTAAACCCT
*
106514891 TAAACACTAAACCC-
1 TAAACCCTAAACCCT
106514905 TAAAC
1 TAAAC
106514910 TATATCCCCT
Statistics
Matches: 101, Mismatches: 33, Indels: 5
0.73 0.24 0.04
Matches are distributed among these distances:
14 34 0.34
15 67 0.66
ACGTcount: A:0.38, C:0.37, G:0.01, T:0.24
Consensus pattern (15 bp):
TAAACCCTAAACCCT
Found at i:106514907 original size:7 final size:7
Alignment explanation
Indices: 106514844--106514909 Score: 60
Period size: 7 Copynumber: 9.1 Consensus size: 7
106514834 AACAATATCC
*
106514844 CCCTAAC
1 CCCTAAA
106514851 CCCTAAA
1 CCCTAAA
106514858 CCCTTAAA
1 CCC-TAAA
106514866 CCCTAAA
1 CCCTAAA
*
106514873 CCCTTAAT
1 CCC-TAAA
*
106514881 CCCTAGA
1 CCCTAAA
**
106514888 CTTTAAA
1 CCCTAAA
*
106514895 CACTAAA
1 CCCTAAA
106514902 CCCTAAA
1 CCCTAAA
106514909 C
1 C
106514910 TATATCCCCT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
7 34 0.72
8 13 0.28
ACGTcount: A:0.38, C:0.39, G:0.02, T:0.21
Consensus pattern (7 bp):
CCCTAAA
Found at i:106515191 original size:16 final size:14
Alignment explanation
Indices: 106515160--106515197 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 14
106515150 TCATAATCCA
106515160 TAAACCATAAACCC
1 TAAACCATAAACCC
106515174 TAAACCATATATACCC
1 TAAACCATA-A-ACCC
106515190 TAAACCAT
1 TAAACCAT
106515198 GCATAAACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 9 0.41
15 1 0.05
16 12 0.55
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:106515478 original size:28 final size:28
Alignment explanation
Indices: 106515424--106515478 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
106515414 CGTGTCCTTC
* * *
106515424 ATTTAGGGTTTATAGTTTAAGGTTTTAA
1 ATTTAAGGTCTATAGTTTAAGGGTTTAA
*
106515452 ATTTAAGGTCTATAGTTTATGGGTTTA
1 ATTTAAGGTCTATAGTTTAAGGGTTTA
106515479 GGGGTTAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (28 bp):
ATTTAAGGTCTATAGTTTAAGGGTTTAA
Found at i:106515598 original size:15 final size:16
Alignment explanation
Indices: 106515580--106515621 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
106515570 GGTTTAAGGG
106515580 TTTAGGGTTTAGT-AA
1 TTTAGGGTTTAGTGAA
*
106515595 TTTAAGGGTTTAGTGGA
1 TTT-AGGGTTTAGTGAA
106515612 -TTAGGGTTTA
1 TTTAGGGTTTA
106515622 AAACATGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 11 0.46
16 12 0.50
17 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (16 bp):
TTTAGGGTTTAGTGAA
Found at i:106515621 original size:23 final size:23
Alignment explanation
Indices: 106515570--106515622 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
106515560 TGAGACTTAA
*
106515570 GGTTTAAGGGTTTAGGGTTTAGT
1 GGTTTAAGGGTTTAGGGATTAGT
**
106515593 AATTTAAGGGTTTAGTGGATTAG-
1 GGTTTAAGGGTTTAG-GGATTAGT
106515616 GGTTTAA
1 GGTTTAA
106515623 AACATGGTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.42
Consensus pattern (23 bp):
GGTTTAAGGGTTTAGGGATTAGT
Found at i:106515691 original size:6 final size:6
Alignment explanation
Indices: 106515672--106515702 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
106515662 TTCAGATATG
106515672 ATCAAA AT-AAA ATCAAA ATCAAA ATCAAA AT
1 ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA AT
106515703 AAGACCTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.19
Consensus pattern (6 bp):
ATCAAA
Found at i:106516096 original size:40 final size:42
Alignment explanation
Indices: 106516017--106516097 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 42
106516007 TAGATCTTTA
* * *
106516017 GCGGCGTTTTTTCAAAAAGCGCTGCTAAAACTCATATCTATT
1 GCGGCGTTTTCTCAAAAAGCACCGCTAAAACTCATATCTATT
*
106516059 GCGGCGTTTTCT-AAAAAGCACCGCTAATACTCA-ATCTAT
1 GCGGCGTTTTCTCAAAAAGCACCGCTAAAACTCATATCTAT
106516098 AGCTGTGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 6 0.17
41 18 0.51
42 11 0.31
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
GCGGCGTTTTCTCAAAAAGCACCGCTAAAACTCATATCTATT
Found at i:106516108 original size:40 final size:40
Alignment explanation
Indices: 106516010--106516100 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 40
106516000 AATAGTTTAG
* * *
106516010 ATCTTTAGCGGCGTTTTTTCAAAAAGCGCTGCTAAAACTCAT
1 ATCTATAGCGGCG--TTTTCAAAAAGCACCGCTAAAACTCAT
* *
106516052 ATCTATTGCGGCGTTTTCTAAAAAGCACCGCTAATACTCA-
1 ATCTATAGCGGCGTTTTC-AAAAAGCACCGCTAAAACTCAT
106516092 ATCTATAGC
1 ATCTATAGC
106516101 TGTGTTTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
40 13 0.31
41 18 0.43
42 11 0.26
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (40 bp):
ATCTATAGCGGCGTTTTCAAAAAGCACCGCTAAAACTCAT
Found at i:106524406 original size:33 final size:33
Alignment explanation
Indices: 106524360--106524441 Score: 80
Period size: 32 Copynumber: 2.5 Consensus size: 33
106524350 GAGTGTGGCT
** *
106524360 GTGTGGGTTACACGGGGCTAAA-CCAGA-CTGGGC
1 GTGTGGGCCACACGGGGC-AAAGCCA-ATCTGGAC
*
106524393 GTGTGGGCCACAC-GGGCAAAGCTAATCTGGAC
1 GTGTGGGCCACACGGGGCAAAGCCAATCTGGAC
106524425 GTGTGGGCCTACACGGG
1 GTGTGGGCC-ACACGGG
106524442 CATGTGGGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
31 4 0.10
32 20 0.49
33 15 0.37
34 2 0.05
ACGTcount: A:0.21, C:0.23, G:0.39, T:0.17
Consensus pattern (33 bp):
GTGTGGGCCACACGGGGCAAAGCCAATCTGGAC
Found at i:106525006 original size:35 final size:35
Alignment explanation
Indices: 106524909--106524995 Score: 174
Period size: 35 Copynumber: 2.5 Consensus size: 35
106524899 TGTATCTGAG
106524909 ATGGGCTTAGGCCCGAACATGCATCTGTGATTGTA
1 ATGGGCTTAGGCCCGAACATGCATCTGTGATTGTA
106524944 ATGGGCTTAGGCCCGAACATGCATCTGTGATTGTA
1 ATGGGCTTAGGCCCGAACATGCATCTGTGATTGTA
106524979 ATGGGCTTAGGCCCGAA
1 ATGGGCTTAGGCCCGAA
106524996 TTTATATCTG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (35 bp):
ATGGGCTTAGGCCCGAACATGCATCTGTGATTGTA
Found at i:106527181 original size:12 final size:13
Alignment explanation
Indices: 106527163--106527192 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
106527153 AAACAAACTC
106527163 CATGGTGGGTTCT
1 CATGGTGGGTTCT
106527176 -ATGGTGGGTTCT
1 CATGGTGGGTTCT
106527188 CATGG
1 CATGG
106527193 AAGCCTCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.10, C:0.13, G:0.40, T:0.37
Consensus pattern (13 bp):
CATGGTGGGTTCT
Found at i:106532085 original size:41 final size:41
Alignment explanation
Indices: 106532028--106532110 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
106532018 TACTATTTTC
*
106532028 TTGCTTCTAAATTGATGAACATATTCTCTAGAACCTCTACT
1 TTGCTTCTAAATTGATGAAAATATTCTCTAGAACCTCTACT
106532069 TTGCTTCTAAATTGATGAAAATATTCTCTAGAACCTCTACT
1 TTGCTTCTAAATTGATGAAAATATTCTCTAGAACCTCTACT
106532110 T
1 T
106532111 CATCTTCTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (41 bp):
TTGCTTCTAAATTGATGAAAATATTCTCTAGAACCTCTACT
Found at i:106532316 original size:22 final size:23
Alignment explanation
Indices: 106532285--106532327 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
106532275 ACTACCATTT
106532285 TCTAAATAAAA-AATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
106532307 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
106532328 ATAATATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:106536781 original size:14 final size:13
Alignment explanation
Indices: 106536763--106536787 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
106536753 ATATTCAATA
106536763 AAAAAAATCTTAC
1 AAAAAAATCTTAC
106536776 AAAAAAATCTTA
1 AAAAAAATCTTA
106536788 AATAAGAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAAAAATCTTAC
Found at i:106536783 original size:29 final size:29
Alignment explanation
Indices: 106536751--106536807 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
106536741 TCAATATATC
*
106536751 AAATATTCAATAAAAAAAATCTTACAAAA
1 AAATATTAAATAAAAAAAATCTTACAAAA
* * * *
106536780 AAATCTTAAATAAGAAATATTTTACAAA
1 AAATATTAAATAAAAAAAATCTTACAAA
106536808 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (29 bp):
AAATATTAAATAAAAAAAATCTTACAAAA
Found at i:106542085 original size:19 final size:19
Alignment explanation
Indices: 106542045--106542087 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
106542035 ATGCCCATAT
*
106542045 TTATTTTATCTAAATAAAA
1 TTATTTTATCTAAAAAAAA
*
106542064 TTATTTT-TTTAAAAAAATA
1 TTATTTTATCTAAAAAAA-A
106542083 TTATT
1 TTATT
106542088 AATAATAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
TTATTTTATCTAAAAAAAA
Found at i:106543201 original size:16 final size:17
Alignment explanation
Indices: 106543180--106543214 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
106543170 GACATGAAAT
106543180 TAATAAAATAAATA-AA
1 TAATAAAATAAATATAA
*
106543196 TAATAATATAAATATAA
1 TAATAAAATAAATATAA
106543213 TA
1 TA
106543215 GCATTCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TAATAAAATAAATATAA
Found at i:106544898 original size:6 final size:6
Alignment explanation
Indices: 106544868--106544928 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
106544858 AAAAGAAAGT
* * * * **
106544868 ATAATC ATAAAA ATAATA GTCATA ATAATA ATAATA ATAGA-A ATAACG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATA-ATA ATAATA
106544916 ATAATA ATAATA A
1 ATAATA ATAATA A
106544929 AGTAAAGAAT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 1 0.02
6 41 0.95
7 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (6 bp):
ATAATA
Found at i:106544913 original size:21 final size:21
Alignment explanation
Indices: 106544868--106544927 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 21
106544858 AAAAGAAAGT
* * **
106544868 ATAATCATAAAAATAATAGTC
1 ATAATAATAATAATAATAGAA
106544889 ATAATAATAATAATAATAGAA
1 ATAATAATAATAATAATAGAA
**
106544910 ATAACGATAATAATAATA
1 ATAATAATAATAATAATA
106544928 AAGTAAAGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (21 bp):
ATAATAATAATAATAATAGAA
Found at i:106553153 original size:51 final size:51
Alignment explanation
Indices: 106553077--106553196 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
106553067 AACTAAGTTA
* *
106553077 TCCGGATAAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
* * *
106553128 TCCGGATGAAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
*
106553179 TCCGGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
106553197 TAAGTTTGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
Found at i:106561801 original size:133 final size:131
Alignment explanation
Indices: 106561607--106561979 Score: 355
Period size: 133 Copynumber: 2.8 Consensus size: 131
106561597 AAATATAAGC
* * * * * *
106561607 AAATTTTTATAATAATATATATTTTTCTTCTCATC-AGAGTGTGCTTAAAAAGAATAGAATGTAC
1 AAATTTTTATAATAATATATATTTTACTTCTCATCGA-AGTGTGATTGAAAAG-TTAAAATGTGC
* * *
106561671 TCACTCATTTACCGACAAGGTATACATGACATGACATTTATCTCTGTATGACTCGAAAAA-ATAT
64 TCACTCATTTACCGACAAGGTATACATGACATGACATTTATCTCTGCACGAAT-GAAAAACATAT
* *
106561735 TAGT
128 CAAT
** *
106561739 AGTTTTTTTATAATAATATATATTTTACCTCTCATCGAAGTGTGATTGAAAATGTTAAAATGTGC
1 A-AATTTTTATAATAATATATATTTTACTTCTCATCGAAGTGTGATTGAAAA-GTTAAAATGTGC
* ** * *
106561804 TCACTCATTTATCGGTGAA-GTATACATGATATGACATTTATC-CTTGCACGAATTAAAAACATA
64 TCACTCATTTA-CCGACAAGGTATACATGACATGACATTTATCTC-TGCACGAATGAAAAACATA
106561867 TCAAT
127 TCAAT
* * ** * *
106561872 AAATTTTT-TAATAATAGATATTTTACTTGTCGGCGGAA-TGT-ATCTGAAAAGTTATAATATGC
1 AAATTTTTATAATAATATATATTTTACTTCTCATC-GAAGTGTGAT-TGAAAAGTTAAAATGTGC
* ** *
106561934 TTACTCATTTATTGATAAGGTATACATGACATGACATTTATCTCTG
64 TCACTCATTTACCGACAAGGTATACATGACATGACATTTATCTCTG
106561980 GGTGGCTTGG
Statistics
Matches: 197, Mismatches: 34, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
129 3 0.02
130 46 0.23
131 31 0.16
132 15 0.08
133 96 0.49
134 6 0.03
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (131 bp):
AAATTTTTATAATAATATATATTTTACTTCTCATCGAAGTGTGATTGAAAAGTTAAAATGTGCTC
ACTCATTTACCGACAAGGTATACATGACATGACATTTATCTCTGCACGAATGAAAAACATATCAA
T
Found at i:106563874 original size:18 final size:17
Alignment explanation
Indices: 106563851--106563912 Score: 52
Period size: 20 Copynumber: 3.3 Consensus size: 17
106563841 AAAAACTATG
106563851 TAAAATTATATAAATAAA
1 TAAAATTATATAAA-AAA
*
106563869 TAAAATGATAATAACAAGAA
1 TAAAATTAT-ATAA-AA-AA
*
106563889 TAAAATGTGTATAAAAAAA
1 TAAAAT-TATAT-AAAAAA
106563908 TAAAA
1 TAAAA
106563913 GTAATATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.22
19 12 0.33
20 13 0.36
21 3 0.08
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.26
Consensus pattern (17 bp):
TAAAATTATATAAAAAA
Found at i:106563911 original size:19 final size:19
Alignment explanation
Indices: 106563859--106563912 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
106563849 TGTAAAATTA
*
106563859 TATAAATAAATAAAATGAT
1 TATAAAAAAATAAAATGAT
* *
106563878 AATAACAAGAATAAAATG-T
1 TATAA-AAAAATAAAATGAT
106563897 GTATAAAAAAATAAAA
1 -TATAAAAAAATAAAA
106563913 GTAATATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (19 bp):
TATAAAAAAATAAAATGAT
Found at i:106563953 original size:29 final size:27
Alignment explanation
Indices: 106563898--106563953 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
106563888 ATAAAATGTG
*
106563898 TATAAAAAAATAAAAGTAATATTAATA
1 TATAAAAAAATAAAAGTAATATGAATA
106563925 TATAAATATAAATAAAAGT-ATAATGAATA
1 TATAAA-A-AAATAAAAGTAAT-ATGAATA
106563954 GAAATATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 6 0.24
28 3 0.12
29 16 0.64
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (27 bp):
TATAAAAAAATAAAAGTAATATGAATA
Found at i:106564102 original size:3 final size:3
Alignment explanation
Indices: 106564096--106564137 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
106564086 CAACAACAAC
*
106564096 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT -AT CAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
106564138 GAAGATAACA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.89
4 2 0.06
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:106564119 original size:15 final size:15
Alignment explanation
Indices: 106564099--106564137 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
106564089 CAACAACAAT
106564099 AATAATAATAATAAC
1 AATAATAATAATAAC
*
106564114 AATAATAATAATATC
1 AATAATAATAATAAC
106564129 AATAATAAT
1 AATAATAAT
106564138 GAAGATAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (15 bp):
AATAATAATAATAAC
Found at i:106566191 original size:88 final size:88
Alignment explanation
Indices: 106566073--106566378 Score: 474
Period size: 88 Copynumber: 3.5 Consensus size: 88
106566063 TAGTTTTGAT
* *
106566073 CGCTTCAATGCCATTTCAGAGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
1 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
*
106566138 AGATACAAATTGTGGCTTTGAGC
66 AGATACAAACTGTGGCTTTGAGC
* * *
106566161 CGCTCCAGTGCCATTTCAGGGAAAAGAGATTTGTAGCTTTGATCTACTCCGCTGAAACTTCAAGG
1 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
** *
106566226 AGAT-C-TGCTGT-ACTTTGAGC
66 AGATACAAACTGTGGCTTTGAGC
*
106566246 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGG
1 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
* *
106566311 AGATACAGACTGTGGCTTCGAGC
66 AGATACAAACTGTGGCTTTGAGC
*
106566334 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCATCGATCT
1 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCT
106566379 GTTCCACTAC
Statistics
Matches: 197, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
85 73 0.37
86 4 0.02
87 5 0.03
88 115 0.58
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (88 bp):
CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
AGATACAAACTGTGGCTTTGAGC
Found at i:106566653 original size:86 final size:86
Alignment explanation
Indices: 106566372--106567088 Score: 941
Period size: 86 Copynumber: 8.3 Consensus size: 86
106566362 ATTTGTAGCA
* *
106566372 TCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
*
106566437 GGGGGTTAAGGCCCATCGTCT
66 GGGGGTTAAGGCTCATCGTCT
* * * *
106566458 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCTTGTTACCCTATTACT
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAA--TTCAGCCTGTTACCCTACTGCT
*
106566523 TAGGGGGTTAAGGCCCATCGTCT
64 TAGGGGGTTAAGGCTCATCGTCT
* *
106566546 TCGATCTGCTCCACTACTGCTTAGGGAAACAAGATCTGTAATTTAGCCTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
106566611 GGGGGTTAAGGCTCA-CTGTCT
66 GGGGGTTAAGGCTCATC-GTCT
* * * *
106566632 TCAATCTGCTCCACTATTGCTTAGGGTGACAAGATCTGTAATTCAGCCTATTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
*
106566697 GGGGGTTAAGGCTAATCGTCT
66 GGGGGTTAAGGCTCATCGTCT
* * * * * *
106566718 TCGATCTGCTCTATTACTACTTAAGGAGACAAGATCTGTAATTCGGCTTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
* *
106566783 AGGGGTTAAGGCTCATCGTGT
66 GGGGGTTAAGGCTCATCGTCT
* * * *
106566804 TCGATCTGGTCCGCTACTACTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTATTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
* * *
106566869 GAGGGTTAAGGCTAACCGTCT
66 GGGGGTTAAGGCTCATCGTCT
* * * *
106566890 TCAATCTGCTCTACTACTGCTTAGGGAGACAAGATCTATAATTCGGCCTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
* * **
106566955 GGGGGTTAAGGCCCGTCACCT
66 GGGGGTTAAGGCTCATCGTCT
* * * * * *
106566976 TCGATCTGTTCCCCTACTACTTAGGGTGATAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTT
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGT-AATTCAGCCTGTTACCCTACTGCTT
* **
106567041 AGGGGGTTAAGGCCCATCACCT
65 AGGGGGTTAAGGCTCATCGTCT
* * *
106567063 TCGATCTGTTCCCCTACTGTTTAGGG
1 TCGATCTGCTCCACTACTGCTTAGGG
106567089 TGATAAAATT
Statistics
Matches: 552, Mismatches: 74, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
85 1 0.00
86 400 0.72
87 70 0.13
88 81 0.15
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (86 bp):
TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
GGGGGTTAAGGCTCATCGTCT
Found at i:106566991 original size:44 final size:44
Alignment explanation
Indices: 106566937--106567088 Score: 155
Period size: 44 Copynumber: 3.5 Consensus size: 44
106566927 ATAATTCGGC
106566937 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGAT
* * * * **** ** *
106566981 CTGTTCCCCTACTACTTAGGGTGATAAGATTTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGA-T
*
106567024 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGAT
* *
106567068 CTGTTCCCCTACTGTTTAGGG
1 CTGTTACCCTACTGCTTAGGG
106567089 TGATAAAATT
Statistics
Matches: 80, Mismatches: 25, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
42 1 0.01
43 29 0.36
44 49 0.61
45 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.32
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGAT
Found at i:106568455 original size:10 final size:10
Alignment explanation
Indices: 106568421--106568455 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
106568411 TGGCCTCTCC
106568421 TTTTTCTTTT
1 TTTTTCTTTT
* *
106568431 CTTTTCTTCT
1 TTTTTCTTTT
106568441 TTTTTCTTTT
1 TTTTTCTTTT
106568451 TTTTT
1 TTTTT
106568456 GAAGGTCTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:106569111 original size:31 final size:32
Alignment explanation
Indices: 106569063--106569134 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
106569053 GATATTTTGA
*
106569063 TATTTTA-TAATTATTTAATTAGATA-AATAT
1 TATTTTATTAATTATTTAATAAGATATAATAT
**
106569093 TATTTTATTAA-TATTTTAATAAGATATTTTAT
1 TATTTTATTAATTA-TTTAATAAGATATAATAT
106569125 TATTTTATTA
1 TATTTTATTA
106569135 GTATATAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 9 0.25
31 14 0.39
32 13 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (32 bp):
TATTTTATTAATTATTTAATAAGATATAATAT
Found at i:106571318 original size:46 final size:46
Alignment explanation
Indices: 106571266--106571628 Score: 494
Period size: 46 Copynumber: 7.9 Consensus size: 46
106571256 GTGCTCTCTA
** *
106571266 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
106571312 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* ** *
106571358 ATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCGACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* ** *
106571404 ATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
106571450 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
*** * *
106571496 ACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
106571542 ACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * * *
106571588 ATA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
106571629 TCATGTCAAA
Statistics
Matches: 291, Mismatches: 25, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 290 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:106571935 original size:16 final size:17
Alignment explanation
Indices: 106571914--106571946 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106571904 ATGATGGAGC
106571914 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
106571930 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
106571947 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:106574716 original size:31 final size:32
Alignment explanation
Indices: 106574681--106574766 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 32
106574671 ATGATGTTAG
*
106574681 AGATATTATGA-TATTTTA-TAAT-TATTTAATT
1 AGATATTAT-ATTATTTTATTAATAT-TTTAATA
*
106574712 AGATA-AATATTATTTTATTAATATTTTAATA
1 AGATATTATATTATTTTATTAATATTTTAATA
106574743 AGATATTTTATTATTATTTTATTA
1 AGATA--TTA-TATTATTTTATTA
106574767 GTATATAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
29 1 0.02
30 9 0.20
31 20 0.44
32 1 0.02
34 1 0.02
35 13 0.29
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (32 bp):
AGATATTATATTATTTTATTAATATTTTAATA
Found at i:106574736 original size:11 final size:11
Alignment explanation
Indices: 106574722--106574766 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
106574712 AGATAAATAT
106574722 TATTTTATTAA
1 TATTTTATTAA
*
106574733 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
106574746 TATTTTATTAT
1 TATTTTATTAA
106574757 TATTTTATTA
1 TATTTTATTA
106574767 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:106576918 original size:46 final size:46
Alignment explanation
Indices: 106576868--106577126 Score: 358
Period size: 46 Copynumber: 5.6 Consensus size: 46
106576858 GCTCTCTGAT
* * * *
106576868 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
106576914 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
106576960 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
106577006 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
106577052 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
106577098 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAGTAAGACCATGGTTGAAAGA
106577127 CATTATGGCA
Statistics
Matches: 202, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 201 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:106577443 original size:16 final size:17
Alignment explanation
Indices: 106577422--106577454 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106577412 ATGATGGAGC
106577422 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
106577438 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
106577455 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:106581227 original size:19 final size:19
Alignment explanation
Indices: 106581203--106581244 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
106581193 AATTCTAATT
106581203 CAAATG-ATGCAATGCAATG
1 CAAATGTATGCAATG-AATG
*
106581222 CAAATGTATGGAATGAATG
1 CAAATGTATGCAATGAATG
106581241 CAAA
1 CAAA
106581245 AGAAAGGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.21
Consensus pattern (19 bp):
CAAATGTATGCAATGAATG
Found at i:106583566 original size:18 final size:18
Alignment explanation
Indices: 106583499--106583559 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 18
106583489 AAAAACTATG
106583499 TAAAA-GTATATAAATAAA
1 TAAAATGTATATAAA-AAA
106583517 TAAAATG-ATAATAACAAGAA
1 TAAAATGTAT-ATAA-AA-AA
106583537 TAAAATGTATATAAAAAA
1 TAAAATGTATATAAAAAA
106583555 TAAAA
1 TAAAA
106583560 GTAATATTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
18 14 0.37
19 8 0.21
20 14 0.37
21 2 0.05
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (18 bp):
TAAAATGTATATAAAAAA
Found at i:106583627 original size:27 final size:27
Alignment explanation
Indices: 106583575--106583627 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
106583565 ATTAATACAT
** *
106583575 AAATATAAATAGAAGTATAATGAATAG
1 AAATATAAATAGAAACATAATAAATAG
106583602 AAATAT-AATAGAAACATAAATAAATA
1 AAATATAAATAGAAACAT-AATAAATA
106583628 ATTAAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (27 bp):
AAATATAAATAGAAACATAATAAATAG
Found at i:106583712 original size:3 final size:3
Alignment explanation
Indices: 106583686--106583776 Score: 80
Period size: 3 Copynumber: 30.7 Consensus size: 3
106583676 GAATATAAAT
* * * * * * *
106583686 ATA ATA CTA ATA GTA ATA AT- ATA ATA ATG ACA ATA GTA ACA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
106583733 ATA ATA ATA ATA ATA ATA AT- ATCA ATA ATA AT- ATCA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA AT-A ATA ATA AT
106583777 GAAGATAACA
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
2 6 0.09
3 60 0.86
4 4 0.06
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:106586444 original size:20 final size:20
Alignment explanation
Indices: 106586407--106586444 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
106586397 AGCTTAGAGT
* *
106586407 TTTTTTTTTCAATTAGGCCC
1 TTTTTTTTTAAATCAGGCCC
106586427 TTTTTTTTTAAATCAGGC
1 TTTTTTTTTAAATCAGGC
106586445 TCAATCCAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.16, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTTTTTTAAATCAGGCCC
Found at i:106588505 original size:9 final size:9
Alignment explanation
Indices: 106588473--106588535 Score: 60
Period size: 9 Copynumber: 6.9 Consensus size: 9
106588463 TATAAAAAAG
106588473 AAAA-TATT
1 AAAATTATT
106588481 AAAATTAATAT
1 AAAATT-AT-T
106588492 AAAATTATT
1 AAAATTATT
106588501 AAAATTA-T
1 AAAATTATT
*
106588509 AAAATTATA
1 AAAATTATT
106588518 AAAACTTA-T
1 AAAA-TTATT
106588527 AAATATTAT
1 AAA-ATTAT
106588536 AAATTATAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
8 12 0.26
9 19 0.41
10 8 0.17
11 7 0.15
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (9 bp):
AAAATTATT
Found at i:106588509 original size:17 final size:17
Alignment explanation
Indices: 106588489--106588545 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
106588479 TTAAAATTAA
106588489 TATAAAATTATTAAAAT
1 TATAAAATTATTAAAAT
*
106588506 TATAAAATTATAAAAACT
1 TATAAAATTATTAAAA-T
106588524 TAT-AAA-TATTATAAAT
1 TATAAAATTATTA-AAAT
106588540 TATAAA
1 TATAAA
106588546 TAATAATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 8 0.23
17 23 0.66
18 4 0.11
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
TATAAAATTATTAAAAT
Found at i:106588534 original size:27 final size:26
Alignment explanation
Indices: 106588480--106588566 Score: 88
Period size: 26 Copynumber: 3.2 Consensus size: 26
106588470 AAGAAAATAT
106588480 TAAAATTAATATAAAATTATTAAAATTA
1 TAAAATT-ATA-AAAATTATTAAAATTA
106588508 TAAAATTATAAAAACTTA-TAAATATTA
1 TAAAATTATAAAAA-TTATTAAA-ATTA
* *
106588535 T-AAATTATAAATAATAATAATAAATTA
1 TAAAATTATAAA-AATTATTA-AAATTA
106588562 TAAAA
1 TAAAA
106588567 GGAAATTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
26 20 0.39
27 19 0.37
28 12 0.24
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (26 bp):
TAAAATTATAAAAATTATTAAAATTA
Found at i:106588536 original size:9 final size:8
Alignment explanation
Indices: 106588489--106588545 Score: 71
Period size: 9 Copynumber: 6.8 Consensus size: 8
106588479 TTAAAATTAA
106588489 TATAAAAT
1 TATAAAAT
106588497 TATTAAAAT
1 TA-TAAAAT
106588506 TATAAAAT
1 TATAAAAT
106588514 TATAAAAACT
1 TAT-AAAA-T
106588524 TATAAATAT
1 TATAAA-AT
106588533 TAT-AAAT
1 TATAAAAT
106588540 TATAAA
1 TATAAA
106588546 TAATAATAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
7 5 0.11
8 15 0.34
9 19 0.43
10 5 0.11
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (8 bp):
TATAAAAT
Found at i:106588543 original size:7 final size:7
Alignment explanation
Indices: 106588498--106588565 Score: 50
Period size: 7 Copynumber: 9.1 Consensus size: 7
106588488 ATATAAAATT
106588498 ATTA-AA
1 ATTATAA
106588504 ATTATAAA
1 ATTAT-AA
106588512 ATTATAAAA
1 ATTAT--AA
106588521 ACTTATAAA
1 A-TTAT-AA
106588530 TATTATAA
1 -ATTATAA
106588538 ATTATAA
1 ATTATAA
*
106588545 ATAAT-A
1 ATTATAA
*
106588551 ATAATAA
1 ATTATAA
106588558 ATTATAA
1 ATTATAA
106588565 A
1 A
106588566 AGGAAATTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
6 10 0.19
7 19 0.35
8 9 0.17
9 11 0.20
10 5 0.09
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (7 bp):
ATTATAA
Found at i:106588564 original size:10 final size:9
Alignment explanation
Indices: 106588446--106588566 Score: 85
Period size: 10 Copynumber: 13.4 Consensus size: 9
106588436 AAATGGTTAA
*
106588446 AAAAATCAT
1 AAAAATTAT
106588455 AAAAATTAT
1 AAAAATTAT
106588464 ATAAAA--A-
1 A-AAAATTAT
106588471 AGAAAA-TAT
1 A-AAAATTAT
*
106588480 TAAAATTAAT
1 AAAAATT-AT
106588490 ATAAAATTAT
1 A-AAAATTAT
*
106588500 TAAAATTAT
1 AAAAATTAT
106588509 -AAAATTAT
1 AAAAATTAT
106588517 AAAAACTTAT
1 AAAAA-TTAT
*
106588527 AAATATTAT
1 AAAAATTAT
106588536 --AAATTAT
1 AAAAATTAT
*
106588543 AAATAATAAT
1 AAA-AATTAT
106588553 AATAAATTAT
1 AA-AAATTAT
106588563 AAAA
1 AAAA
106588567 GGAAATTTAT
Statistics
Matches: 91, Mismatches: 9, Indels: 24
0.73 0.07 0.19
Matches are distributed among these distances:
7 11 0.12
8 14 0.15
9 29 0.32
10 30 0.33
11 7 0.08
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:106589314 original size:29 final size:29
Alignment explanation
Indices: 106589282--106589358 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
106589272 TTTTATGATT
* *
106589282 TTTTTATAATTTTTGTAATTTT-ATATAAA
1 TTTTAATAATTTTTATAATTTTCATA-AAA
* *
106589311 TTTTAATACTTTTTATGATTTTCATAAAA
1 TTTTAATAATTTTTATAATTTTCATAAAA
* *
106589340 TTATAATATGTTTTTATAA
1 TTTTAATA-ATTTTTATAA
106589359 AAATTTTAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 28 0.72
30 11 0.28
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.58
Consensus pattern (29 bp):
TTTTAATAATTTTTATAATTTTCATAAAA
Found at i:106589361 original size:22 final size:22
Alignment explanation
Indices: 106589328--106589378 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
106589318 ACTTTTTATG
106589328 ATTTTCAT-AAAATTATAATATGT
1 ATTTT-ATAAAAATTATAA-ATGT
*
106589351 -TTTTATAAAAATTTTAAATGT
1 ATTTTATAAAAATTATAAATGT
106589372 ATTTTAT
1 ATTTTAT
106589379 TAATTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (22 bp):
ATTTTATAAAAATTATAAATGT
Found at i:106595891 original size:7 final size:7
Alignment explanation
Indices: 106595879--106595931 Score: 88
Period size: 7 Copynumber: 7.6 Consensus size: 7
106595869 GCTTCCACGT
106595879 GAACTTG
1 GAACTTG
106595886 GAACTTG
1 GAACTTG
*
106595893 GAAGTTG
1 GAACTTG
*
106595900 GAAGTTG
1 GAACTTG
106595907 GAACTTG
1 GAACTTG
106595914 GAACTTG
1 GAACTTG
106595921 GAACTTG
1 GAACTTG
106595928 GAAC
1 GAAC
106595932 CAGCTTTCCA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.26
Consensus pattern (7 bp):
GAACTTG
Found at i:106597704 original size:70 final size:70
Alignment explanation
Indices: 106597591--106597731 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
106597581 AAAGGTTAAG
*
106597591 GCTTTAGATTTATGTAAGTTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
1 GCTTTAGATTTATGTAAGCTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
106597656 TTAGA
66 TTAGA
106597661 GCTTTAGATTTATGTAAGCTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
1 GCTTTAGATTTATGTAAGCTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
106597726 TTAGA
66 TTAGA
106597731 G
1 G
106597732 GCTACGGATA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.27, C:0.04, G:0.28, T:0.42
Consensus pattern (70 bp):
GCTTTAGATTTATGTAAGCTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
TTAGA
Found at i:106608410 original size:24 final size:24
Alignment explanation
Indices: 106608378--106608426 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
106608368 CATCATCTTT
106608378 TATATATATACTTTTACTTGAACA
1 TATATATATACTTTTACTTGAACA
106608402 TATATATATACTTTTACTTGAACA
1 TATATATATACTTTTACTTGAACA
106608426 T
1 T
106608427 TTCACATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.47
Consensus pattern (24 bp):
TATATATATACTTTTACTTGAACA
Found at i:106629781 original size:10 final size:10
Alignment explanation
Indices: 106629754--106629801 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
106629744 TTAAATTCTA
*
106629754 AAAGATAAAT
1 AAAGATAATT
106629764 ACAA-ATAATT
1 A-AAGATAATT
*
106629774 AAATATAATT
1 AAAGATAATT
*
106629784 AAAGATAATA
1 AAAGATAATT
106629794 AAAGATAA
1 AAAGATAA
106629802 ATGAAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (10 bp):
AAAGATAATT
Found at i:106629811 original size:20 final size:19
Alignment explanation
Indices: 106629752--106629811 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
106629742 AATTAAATTC
106629752 TAAAAGATAAATACAAATAA
1 TAAAAGATAAATA-AAATAA
* * *
106629772 TTAAATATAATTAAAGATAA
1 TAAAAGATAAATAAA-ATAA
106629792 TAAAAGATAAATGAAAATAA
1 TAAAAGATAAAT-AAAATAA
106629812 ATCCTAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 2 0.06
20 27 0.84
21 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (19 bp):
TAAAAGATAAATAAAATAA
Found at i:106630410 original size:11 final size:11
Alignment explanation
Indices: 106630396--106630434 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
106630386 TTTTTTTTCT
106630396 TTTTTAATTAA
1 TTTTTAATTAA
106630407 TTTTTAATTAA
1 TTTTTAATTAA
* *
106630418 TTAATTAATTTA
1 TT-TTTAATTAA
106630430 TTTTT
1 TTTTT
106630435 GCTTAGGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTTAATTAA
Found at i:106631679 original size:20 final size:18
Alignment explanation
Indices: 106631654--106631722 Score: 81
Period size: 20 Copynumber: 3.8 Consensus size: 18
106631644 TCACCCAAAC
106631654 AAAATAAAGTAATAAATAA
1 AAAATAAA-TAATAAATAA
106631673 TAAAATAAAATAATAAATAA
1 -AAAAT-AAATAATAAATAA
*
106631693 ATAATAAA-AATAAAT-A
1 AAAATAAATAATAAATAA
106631709 AAAATAAA-AATAAA
1 AAAATAAATAATAAA
106631723 AATTGGGTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
16 14 0.30
17 7 0.15
18 3 0.07
19 4 0.09
20 15 0.33
21 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.22
Consensus pattern (18 bp):
AAAATAAATAATAAATAA
Found at i:106631685 original size:13 final size:13
Alignment explanation
Indices: 106631667--106631717 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 13
106631657 ATAAAGTAAT
106631667 AAATAATAAAATA
1 AAATAATAAAATA
106631680 AAATAAT-AAAT-
1 AAATAATAAAATA
106631691 AAATAATAAAA-A
1 AAATAATAAAATA
106631703 TAAAT-A-AAAATA
1 -AAATAATAAAATA
106631715 AAA
1 AAA
106631718 ATAAAAATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
11 14 0.41
12 9 0.26
13 11 0.32
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AAATAATAAAATA
Found at i:106631691 original size:17 final size:17
Alignment explanation
Indices: 106631667--106631722 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
106631657 ATAAAGTAAT
106631667 AAAT-AATAAAATAAAA
1 AAATAAATAAAATAAAA
*
106631683 TAATAAAT-AAATAATAA
1 AAATAAATAAAATAA-AA
*
106631700 AAATAAATAAAA-ATAA
1 AAATAAATAAAATAAAA
106631716 AAATAAA
1 AAATAAA
106631723 AATTGGGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 18 0.53
17 13 0.38
18 3 0.09
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATAAATAAAATAAAA
Found at i:106631694 original size:16 final size:16
Alignment explanation
Indices: 106631655--106631722 Score: 61
Period size: 16 Copynumber: 4.2 Consensus size: 16
106631645 CACCCAAACA
*
106631655 AAATAAAGTAATAAAT
1 AAATAAAATAATAAAT
*
106631671 -AATAAAATAAAATAAT
1 AAATAAAATAATA-AAT
106631687 AAAT-AAATAATAAAAAT
1 AAATAAAATAAT--AAAT
106631704 AAATAAAAATAA-AAAT
1 AAAT-AAAATAATAAAT
106631720 AAA
1 AAA
106631723 AATTGGGTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
15 10 0.23
16 16 0.37
17 10 0.23
18 1 0.02
19 6 0.14
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.22
Consensus pattern (16 bp):
AAATAAAATAATAAAT
Found at i:106631694 original size:24 final size:23
Alignment explanation
Indices: 106631655--106631725 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 23
106631645 CACCCAAACA
106631655 AAATAAAGTAATAAATAAT-AAAAT
1 AAATAAA--AATAAATAATAAAAAT
106631679 AAAATAATAAATAAATAATAAAAAT
1 -AAATAA-AAATAAATAATAAAAAT
106631704 AAATAAAAATAAA-AATAAAAAT
1 AAATAAAAATAAATAATAAAAAT
106631726 TGGGTTGCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
22 9 0.20
23 7 0.16
24 16 0.36
25 11 0.25
26 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.23
Consensus pattern (23 bp):
AAATAAAAATAAATAATAAAAAT
Found at i:106631721 original size:12 final size:12
Alignment explanation
Indices: 106631654--106631725 Score: 71
Period size: 12 Copynumber: 5.9 Consensus size: 12
106631644 TCACCCAAAC
106631654 AAAATAAAGTAATA
1 AAAATAAA--AATA
106631668 AATAAT-AAAAT-
1 AA-AATAAAAATA
106631679 AAAATAATAAATA
1 AAAATAA-AAATA
106631692 AATAATAAAAAT-
1 AA-AATAAAAATA
106631704 -AAATAAAAATA
1 AAAATAAAAATA
106631715 AAAATAAAAAT
1 AAAATAAAAAT
106631726 TGGGTTGCCT
Statistics
Matches: 51, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
10 12 0.24
11 4 0.08
12 17 0.33
13 6 0.12
14 9 0.18
15 3 0.06
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.22
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:106635247 original size:5 final size:5
Alignment explanation
Indices: 106635237--106635268 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
106635227 TTCAAATTGC
106635237 TATTT TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TATTT TA
106635269 CATCTTGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:106635834 original size:131 final size:131
Alignment explanation
Indices: 106635600--106635949 Score: 567
Period size: 131 Copynumber: 2.7 Consensus size: 131
106635590 TAATTATTCA
* * *
106635600 TTTAAAAATTCTTAAAAACGAAGGAAATGTTCGATGTTTGGCAATTCAGGAAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * *
106635665 GTGCTAGGTTGCGATTTCCCGTTCATTCAAAACAATCGATTATTCCTTTGGGATTTCACTCATGT
66 GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGT
106635730 C
131 C
*
106635731 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* *
106635796 GTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGT
66 GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGT
106635861 C
131 C
*
106635862 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTA-C
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* *
106635926 TGTGCTGGGTTTCGATTTTTCGTT
66 -GTGCTGGGTTGCGATTTCTCGTT
106635950 AGACTAAACA
Statistics
Matches: 204, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
130 1 0.00
131 203 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGT
C
Found at i:106636944 original size:28 final size:29
Alignment explanation
Indices: 106636903--106636962 Score: 95
Period size: 28 Copynumber: 2.1 Consensus size: 29
106636893 ATTGGGGAGT
*
106636903 CATGTTGACCAACGGTCCTCCACTAGCGG
1 CATGTTGACCAACGGTCCTCCACTAGCAG
*
106636932 CATG-TGACCAACGGTTCTCCACTAGCAG
1 CATGTTGACCAACGGTCCTCCACTAGCAG
106636960 CAT
1 CAT
106636963 CTACCATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 25 0.86
29 4 0.14
ACGTcount: A:0.23, C:0.33, G:0.22, T:0.22
Consensus pattern (29 bp):
CATGTTGACCAACGGTCCTCCACTAGCAG
Found at i:106640267 original size:14 final size:13
Alignment explanation
Indices: 106640231--106640267 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
106640221 AAAATTAAAT
106640231 CTAAATAATTATC
1 CTAAATAATTATC
*
106640244 CTTAATAATTATC
1 CTAAATAATTATC
106640257 CTAATATAATT
1 CTAA-ATAATT
106640268 GGAATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:106645370 original size:16 final size:17
Alignment explanation
Indices: 106645347--106645389 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
106645337 TCTATAATGC
*
106645347 ATTATAAATTATATAAT
1 ATTATAAATAATATAAT
106645364 A-TATAAAGATAATATAAT
1 ATTAT-AA-ATAATATAAT
106645382 ATTATAAA
1 ATTATAAA
106645390 CTAGAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
16 3 0.14
17 4 0.18
18 12 0.55
19 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
ATTATAAATAATATAAT
Found at i:106646053 original size:14 final size:14
Alignment explanation
Indices: 106646034--106646061 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106646024 ATTGGACTAC
106646034 TTAATTATTATAAT
1 TTAATTATTATAAT
106646048 TTAATTATTATAAT
1 TTAATTATTATAAT
106646062 ATTGAATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAATTATTATAAT
Found at i:106647997 original size:19 final size:19
Alignment explanation
Indices: 106647973--106648034 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 19
106647963 TTTGGTTCAG
106647973 ACTTTCAATTGGTTGCTTT
1 ACTTTCAATTGGTTGCTTT
* *
106647992 ACTTTCAA-TGGCTTTGGTTGAC
1 ACTTTCAATTGG--TTGCTT--T
106648014 ACTTTCAATTGGTTGCTTT
1 ACTTTCAATTGGTTGCTTT
106648033 AC
1 AC
106648035 ATTTAAGTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.09
19 10 0.29
20 5 0.15
21 5 0.15
22 8 0.24
23 3 0.09
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47
Consensus pattern (19 bp):
ACTTTCAATTGGTTGCTTT
Found at i:106648018 original size:41 final size:41
Alignment explanation
Indices: 106647957--106648034 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
106647947 AGGCAATTCT
*
106647957 AATGGCTTTGGTTCAGACTTTCAATTGGTTGCTTTACTTTC
1 AATGGCTTTGGTTCACACTTTCAATTGGTTGCTTTACTTTC
*
106647998 AATGGCTTTGGTTGACACTTTCAATTGGTTGCTTTAC
1 AATGGCTTTGGTTCACACTTTCAATTGGTTGCTTTAC
106648035 ATTTAAGTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.45
Consensus pattern (41 bp):
AATGGCTTTGGTTCACACTTTCAATTGGTTGCTTTACTTTC
Found at i:106650412 original size:17 final size:17
Alignment explanation
Indices: 106650390--106650428 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
106650380 TAAAAAAAAA
* *
106650390 TTATTTTTTTTATTTTT
1 TTATTTCTTGTATTTTT
106650407 TTATTTCTTGTATTTTT
1 TTATTTCTTGTATTTTT
*
106650424 ATATT
1 TTATT
106650429 ATACTTTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (17 bp):
TTATTTCTTGTATTTTT
Found at i:106651764 original size:73 final size:72
Alignment explanation
Indices: 106651535--106651864 Score: 398
Period size: 73 Copynumber: 4.5 Consensus size: 72
106651525 CGGCATGTGA
* * * * * * * *
106651535 TCTTGA-GCCCAACTTATTTCTCGCAATATGAATTGACTCTTTAAAAACAAAAACT-AAAGATAT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTTGAAAACAGAAATTGAAA-ATAC
106651598 CTCAACATGTG
64 CTCAAC--GTG
* * * *
106651609 AAC-TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATT
1 -TCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAAT
*
106651672 ACCTCAGCGTG
62 ACCTCAACGTG
*
106651683 TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACC
106651748 TCAACGTG
65 TCAACGTG
*
106651756 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
* *
106651821 TAATGTG
66 CAACGTG
106651828 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
106651865 TTCTTTCAAA
Statistics
Matches: 226, Mismatches: 21, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
72 67 0.30
73 73 0.32
74 36 0.16
75 24 0.11
76 22 0.10
77 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (72 bp):
TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
CAACGTG
Found at i:106651848 original size:72 final size:72
Alignment explanation
Indices: 106651612--106651864 Score: 400
Period size: 73 Copynumber: 3.5 Consensus size: 72
106651602 ACATGTGAAC
* *
106651612 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* *
106651676 CAGCGTGTCC
63 CAACGTGTCT
*
106651686 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
106651751 ACGTGTCT
65 ACGTGTCT
*
106651759 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTTAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
106651824 TGTGTCT
66 CGTGTCT
106651831 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
106651865 TTCTTTCAAA
Statistics
Matches: 169, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
72 67 0.40
73 72 0.43
74 30 0.18
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:106651946 original size:88 final size:86
Alignment explanation
Indices: 106651797--106652041 Score: 285
Period size: 88 Copynumber: 2.8 Consensus size: 86
106651787 AGTTGAATTT
* *** * **
106651797 TGAAAACAGAAATTGAAATTACCTTAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
106651862 TGATTCTTTCAAAAACATAATAA
66 TGATTCTTTCAAAAACA-AA-AA
* *
106651885 TGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
106651950 TGATTTTTTGAGAAACAGAAA
66 TGATTCTTTCAAAAACAAAAA
* **
106651971 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CAGAAATTGAAAATACCTC-G-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
106652035 GAGTTGA
62 GAGTTGA
106652042 AATTAAAATA
Statistics
Matches: 135, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
86 7 0.05
87 15 0.11
88 72 0.53
89 41 0.30
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (86 bp):
TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTCTTTCAAAAACAAAAA
Found at i:106652166 original size:75 final size:72
Alignment explanation
Indices: 106652071--106652212 Score: 185
Period size: 72 Copynumber: 1.9 Consensus size: 72
106652061 GTAATCTGAA
* * *
106652071 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAACAGAAATTGAAAATACCTCAAC
1 GCTCAACTCACCTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAAATACCTCAAC
106652136 GTGTCTTGAG
63 GTGTCTTGAG
** * * *
106652146 GCTCAACTCATTTCTTGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
106652211 TC
66 TC
106652213 ATCTAAGTCC
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
72 33 0.56
75 26 0.44
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
TCTTGAG
Found at i:106654858 original size:32 final size:32
Alignment explanation
Indices: 106654822--106654886 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
106654812 TGTATGCATT
106654822 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
106654854 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
106654886 T
1 T
106654887 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:106656397 original size:26 final size:26
Alignment explanation
Indices: 106656367--106656419 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
106656357 TTTATAGTTT
106656367 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
106656393 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
106656419 T
1 T
106656420 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:106659347 original size:15 final size:15
Alignment explanation
Indices: 106659324--106659355 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
106659314 AAATAATAAT
106659324 TTATATATATTTATC
1 TTATATATATTTATC
*
106659339 TTATTTATATTTATC
1 TTATATATATTTATC
106659354 TT
1 TT
106659356 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:106660382 original size:16 final size:16
Alignment explanation
Indices: 106660361--106660439 Score: 74
Period size: 16 Copynumber: 5.1 Consensus size: 16
106660351 ACCGCCGCTA
106660361 ATGATAAAATTAATTT
1 ATGATAAAATTAATTT
106660377 ATGATAAAATTAATTT
1 ATGATAAAATTAATTT
* * **
106660393 -TAAAAAAAGGAAATTT
1 ATGATAAAA-TTAATTT
*
106660409 A--AAAAAATTAATTT
1 ATGATAAAATTAATTT
*
106660423 ATGATAAAATTGATTT
1 ATGATAAAATTAATTT
106660439 A
1 A
106660440 ACAATCTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
14 6 0.12
15 12 0.24
16 33 0.65
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (16 bp):
ATGATAAAATTAATTT
Found at i:106663709 original size:10 final size:10
Alignment explanation
Indices: 106663694--106663718 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
106663684 CACAAGAAAT
106663694 AAAAAAATAA
1 AAAAAAATAA
106663704 AAAAAAATAA
1 AAAAAAATAA
106663714 AAAAA
1 AAAAA
106663719 TATTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:106663834 original size:11 final size:11
Alignment explanation
Indices: 106663818--106663852 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
106663808 CCGGATTCCC
106663818 CTCCCTTCTCT
1 CTCCCTTCTCT
106663829 CTCCCTTCTCT
1 CTCCCTTCTCT
106663840 CTTCCC-TCTCT
1 C-TCCCTTCTCT
106663851 CT
1 CT
106663853 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:106664379 original size:23 final size:23
Alignment explanation
Indices: 106664335--106664380 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
106664325 ATATTACCAT
*
106664335 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
106664358 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
106664381 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:106664650 original size:19 final size:19
Alignment explanation
Indices: 106664615--106664651 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
106664605 ATATATTACC
**
106664615 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
106664634 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
106664652 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:106665947 original size:26 final size:26
Alignment explanation
Indices: 106665918--106666025 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
106665908 TGATACAAAT
106665918 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
106665944 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
106665970 TGATAATGAGTTAGGTAGATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106665996 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106666022 TGAT
1 TGAT
106666026 GGGAATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106678861 original size:13 final size:13
Alignment explanation
Indices: 106678843--106678869 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
106678833 ACACTCTTTT
106678843 TTTTGTGTGTCCC
1 TTTTGTGTGTCCC
106678856 TTTTGTGTGTCCC
1 TTTTGTGTGTCCC
106678869 T
1 T
106678870 AAGTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.22, G:0.22, T:0.56
Consensus pattern (13 bp):
TTTTGTGTGTCCC
Found at i:106683609 original size:77 final size:75
Alignment explanation
Indices: 106683380--106683635 Score: 245
Period size: 75 Copynumber: 3.4 Consensus size: 75
106683370 TTCTGTTTTT
* ** *
106683380 AAAAATCAACTCATATTGCGAAAGATGAGTTAAGCCTCAAG-ACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCT-TGGCACACGCTGAGGTATTTTCAATTT
*
106683444 CTG-TCTTTCAA
65 CTGTTC-ATCAA
* * * * * **
106683455 AAAAACCAACTCATATTGAGAGAAATGAGTTGAGCCTCAGG-ACATACTGAGGTAATTTT-AATT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCT-TGGCACACGCTGAGGT-ATTTTCAATT
* *
106683518 TTTGTTCATAAA
64 TCTGTTCATCAA
* * *
106683530 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACACGCTGAGATTTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCTTGG--CACACGCTGAGGTATTTTCAATT
*
106683595 TCTGTTCGTC--
64 TCTGTTCATCAA
*
106683605 AAAAATCAACTCATATTGCGAGAGGTGAGTT
1 AAAAATCAACTCATATTGCGAGAGATGAGTT
106683636 GACTCTCAGG
Statistics
Matches: 150, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
74 2 0.01
75 117 0.78
76 11 0.07
77 20 0.13
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCTTGGCACACGCTGAGGTATTTTCAATTTC
TGTTCATCAA
Found at i:106685556 original size:22 final size:22
Alignment explanation
Indices: 106685531--106685575 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
106685521 TTAATTTTAA
*
106685531 TATTATTCATACTATTATATTT
1 TATTACTCATACTATTATATTT
** *
106685553 TATTACTGTTATTATTATATTT
1 TATTACTCATACTATTATATTT
106685575 T
1 T
106685576 TATTTATTAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (22 bp):
TATTACTCATACTATTATATTT
Found at i:106685757 original size:11 final size:12
Alignment explanation
Indices: 106685738--106685835 Score: 59
Period size: 11 Copynumber: 8.7 Consensus size: 12
106685728 CATATTACGC
106685738 ATATATATATTA
1 ATATATATATTA
106685750 ATAT-TATATT-
1 ATATATATATTA
*
106685760 ATGTATATTATT-
1 ATATATA-TATTA
* * *
106685772 TTTTAAATATT-
1 ATATATATATTA
*
106685783 ATATATATATTT
1 ATATATATATTA
106685795 ATATAT-TATGT-
1 ATATATATAT-TA
*
106685806 ATATAT-TTTTA
1 ATATATATATTA
*
106685817 ATATATA-ATGA
1 ATATATATATTA
106685828 ATATATAT
1 ATATATAT
106685836 TATGTACATA
Statistics
Matches: 69, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
10 4 0.06
11 46 0.67
12 19 0.28
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (12 bp):
ATATATATATTA
Found at i:106685793 original size:39 final size:38
Alignment explanation
Indices: 106685738--106685906 Score: 100
Period size: 35 Copynumber: 4.2 Consensus size: 38
106685728 CATATTACGC
106685738 ATATA-TATAT-TAATATTATATTATGTATATTATTTTTTA
1 ATATATTATATAT-ATATTATATTATGTATA-TA-TTTTTA
106685777 A-ATATTATATATATATTTATATATTATGTATATATTTTTA
1 ATATATTATATATATA--T-TATATTATGTATATATTTTTA
* * *
106685817 ATATA-TA-ATGA-ATA-TATATTATGTACATACTCTTA
1 ATATATTATAT-ATATATTATATTATGTATATATTTTTA
* *
106685852 ATATTATTATGTATTTATTTTTAATATATATGTATATATTTATGTA
1 ATA-TATTA--TATATA-TATT-ATAT-TATGTATATATTT-T-TA
106685898 ATATTATTA
1 ATA-TATTA
106685907 ATAGTTTTTT
Statistics
Matches: 103, Mismatches: 8, Indels: 31
0.73 0.06 0.22
Matches are distributed among these distances:
35 21 0.20
36 2 0.02
37 2 0.02
38 3 0.03
39 14 0.14
40 14 0.14
41 7 0.07
42 14 0.14
43 4 0.04
44 10 0.10
45 1 0.01
46 11 0.11
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (38 bp):
ATATATTATATATATATTATATTATGTATATATTTTTA
Found at i:106685795 original size:19 final size:19
Alignment explanation
Indices: 106685773--106685813 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
106685763 TATATTATTT
106685773 TTTAAATATTATATATATA
1 TTTAAATATTATATATATA
* *
106685792 TTTATATATTATGTATATA
1 TTTAAATATTATATATATA
106685811 TTT
1 TTT
106685814 TTAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTAAATATTATATATATA
Found at i:106685831 original size:22 final size:21
Alignment explanation
Indices: 106685785--106685836 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
106685775 TAAATATTAT
* *
106685785 ATATATATTTATATATTATGT
1 ATATATATTTATATATAATGA
*
106685806 ATATATTTTTAATATATAATGA
1 ATATATATTT-ATATATAATGA
106685828 ATATATATT
1 ATATATATT
106685837 ATGTACATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (21 bp):
ATATATATTTATATATAATGA
Found at i:106685832 original size:45 final size:44
Alignment explanation
Indices: 106685738--106685838 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 44
106685728 CATATTACGC
106685738 ATATATATATTAATATTATATTATGTATATTATTTTTTAAATATT
1 ATATATATATT-ATATTATATTATGTATATTATTTTTTAAATATT
*
106685783 ATATATATATT-TA-TATATTATGTATA-TA-TTTTTAATATATA
1 ATATATATATTATATTATATTATGTATATTATTTTTTAA-ATATT
106685824 ATGAATATATATTAT
1 AT--ATATATATTAT
106685839 GTACATACTC
Statistics
Matches: 51, Mismatches: 1, Indels: 9
0.84 0.02 0.15
Matches are distributed among these distances:
40 7 0.14
41 8 0.16
42 13 0.25
43 11 0.22
44 1 0.02
45 11 0.22
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (44 bp):
ATATATATATTATATTATATTATGTATATTATTTTTTAAATATT
Found at i:106685885 original size:21 final size:23
Alignment explanation
Indices: 106685830--106685906 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 23
106685820 TATAATGAAT
* * *
106685830 ATATATTATGTACATA-CTCTTA
1 ATATATTATGTATATATTTATTA
*
106685852 ATATTATTATGTATTTATTT-TTA
1 ATA-TATTATGTATATATTTATTA
106685875 ATATA-TATGTATATATTTATGTA
1 ATATATTATGTATATATTTAT-TA
106685898 ATATTATTA
1 ATA-TATTA
106685907 ATAGTTTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
21 12 0.27
22 6 0.13
23 22 0.49
24 3 0.07
25 2 0.04
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (23 bp):
ATATATTATGTATATATTTATTA
Found at i:106685891 original size:25 final size:23
Alignment explanation
Indices: 106685849--106685929 Score: 80
Period size: 22 Copynumber: 3.6 Consensus size: 23
106685839 GTACATACTC
*
106685849 TTAATATTATTATGTATTTATTT
1 TTAATATTATTATATATTTATTT
106685872 TTAATATATATGTATATATTTA--T
1 TTAATAT-TAT-TATATATTTATTT
*
106685895 GTAATATTATTA-ATAGTTT-TTT
1 TTAATATTATTATATA-TTTATTT
*
106685917 TTAACATTATTAT
1 TTAATATTATTAT
106685930 CATTTCTCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
20 3 0.06
21 5 0.10
22 14 0.29
23 14 0.29
24 3 0.06
25 9 0.19
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (23 bp):
TTAATATTATTATATATTTATTT
Found at i:106685967 original size:23 final size:23
Alignment explanation
Indices: 106685939--106685990 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
106685929 TCATTTCTCA
* *
106685939 TATATATGTGTATCGTATATGTTTT
1 TATATAT-AGTAT-GTATATATTTT
*
106685964 TATATATATTATGTATATATTTT
1 TATATATAGTATGTATATATTTT
106685987 TATA
1 TATA
106685991 ATATCCTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 14 0.58
24 3 0.12
25 7 0.29
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.58
Consensus pattern (23 bp):
TATATATAGTATGTATATATTTT
Found at i:106685967 original size:25 final size:23
Alignment explanation
Indices: 106685939--106686189 Score: 100
Period size: 24 Copynumber: 10.9 Consensus size: 23
106685929 TCATTTCTCA
* *
106685939 TATATATGTGTATCGTATATGTTTT
1 TATATATAT-TAT-GTATATATTTT
106685964 TATATATATTATGTATATATTTT
1 TATATATATTATGTATATATTTT
* *
106685987 TATAATATCCTTAT-TAT-TATTAT
1 TAT-ATAT-ATTATGTATATATTTT
* * *
106686010 TAT-TATTATTA-GTATGTGTGTT
1 TATATA-TATTATGTATATATTTT
*
106686032 T-TAT-TA-TATGTATATATCTT
1 TATATATATTATGTATATATTTT
106686052 TA-ATATA-TATGTATATA--TT
1 TATATATATTATGTATATATTTT
*
106686071 TATGAAATATTAT-TA-ATAGTTGTT
1 TAT-ATATATTATGTATATA-TT-TT
* * *
106686095 TTTTTAACATTAT-TAT-TATTTCT
1 TATAT-ATATTATGTATATATTT-T
* *
106686118 AATATGTATATACTATGTAAATATTTT
1 --TA--TATATATTATGTATATATTTT
* *
106686145 AATACTATATTATGTATACATTTTT
1 TATA-TATATTATGTATATA-TTTT
*
106686170 TATATATATTACGTATATAT
1 TATATATATTATGTATATAT
106686190 ATATTTTTAA
Statistics
Matches: 171, Mismatches: 28, Indels: 56
0.67 0.11 0.22
Matches are distributed among these distances:
19 6 0.04
20 16 0.09
21 27 0.16
22 10 0.06
23 27 0.16
24 49 0.29
25 21 0.12
26 5 0.03
27 5 0.03
28 5 0.03
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.55
Consensus pattern (23 bp):
TATATATATTATGTATATATTTT
Found at i:106686202 original size:13 final size:12
Alignment explanation
Indices: 106686138--106686255 Score: 51
Period size: 13 Copynumber: 9.2 Consensus size: 12
106686128 TACTATGTAA
*
106686138 ATATTTTAATACT
1 ATATTTTTATA-T
* *
106686151 ATATTATGTATAC
1 ATATT-TTTATAT
106686164 AT-TTTTTATAT
1 ATATTTTTATAT
*
106686175 ATATTACGTATATAT
1 ATATT---TTTATAT
106686190 ATATTTTTAATATT
1 ATATTTTT-ATA-T
*
106686204 GTATTTTTATAT
1 ATATTTTTATAT
* *
106686216 ATGTTATGTATAT
1 ATATT-TTTATAT
* *
106686229 AT-CTTTAATACT
1 ATATTTTTATA-T
106686241 ATATTATTTATAT
1 ATATT-TTTATAT
106686254 AT
1 AT
106686256 TTTCTATTTT
Statistics
Matches: 78, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
11 11 0.14
12 14 0.18
13 25 0.32
14 17 0.22
15 11 0.14
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (12 bp):
ATATTTTTATAT
Found at i:106686202 original size:15 final size:14
Alignment explanation
Indices: 106686154--106686217 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
106686144 TAATACTATA
* *
106686154 TTATGTATACATTT
1 TTATATATATATTT
*
106686168 TT-TATATATATTAC
1 TTATATATATATT-T
*
106686182 GTATATATATATTT
1 TTATATATATATTT
*
106686196 TTA-ATATTGTATTT
1 TTATATA-TATATTT
106686210 TTATATAT
1 TTATATAT
106686218 GTTATGTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
13 11 0.28
14 15 0.38
15 13 0.33
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (14 bp):
TTATATATATATTT
Found at i:106686215 original size:37 final size:39
Alignment explanation
Indices: 106686169--106686253 Score: 95
Period size: 37 Copynumber: 2.3 Consensus size: 39
106686159 TATACATTTT
* * * *
106686169 TTATATATATTACG-TATATATATATTTTTAATATTGTA
1 TTATTTATATTACGTTATATATATATCTTTAATACTATA
* *
106686207 TT-TTTATA-TATGTTATGTATATATCTTTAATACTATA
1 TTATTTATATTACGTTATATATATATCTTTAATACTATA
106686244 TTATTTATAT
1 TTATTTATAT
106686254 ATTTTCTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
36 3 0.08
37 27 0.71
38 8 0.21
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.58
Consensus pattern (39 bp):
TTATTTATATTACGTTATATATATATCTTTAATACTATA
Found at i:106686432 original size:22 final size:22
Alignment explanation
Indices: 106686402--106686460 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
106686392 TGTATACATT
*
106686402 TTTTAAATACTATATTATATATA
1 TTTT-AATACTATATTATATACA
** *
106686425 TTTTAATACCGTATTATGTACA
1 TTTTAATACTATATTATATACA
* *
106686447 TTTTATTATTATAT
1 TTTTAATACTATAT
106686461 CTATTTTTAC
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
22 24 0.86
23 4 0.14
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (22 bp):
TTTTAATACTATATTATATACA
Found at i:106691846 original size:15 final size:15
Alignment explanation
Indices: 106691826--106691856 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
106691816 GTCATGTAAG
106691826 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
106691841 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
106691856 T
1 T
106691857 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:106692817 original size:15 final size:15
Alignment explanation
Indices: 106692793--106692822 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106692783 TGGAGATCGA
*
106692793 GGAAATGGTCGTGGT
1 GGAAAAGGTCGTGGT
106692808 GGAAAAGGTCGTGGT
1 GGAAAAGGTCGTGGT
106692823 CAAGAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (15 bp):
GGAAAAGGTCGTGGT
Found at i:106696160 original size:18 final size:19
Alignment explanation
Indices: 106696127--106696162 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
106696117 TGTTTGTTTA
*
106696127 ATTTTTATATATTTTTTGG
1 ATTTTTATATAATTTTTGG
106696146 ATTTTTA-ATAATTTTTG
1 ATTTTTATATAATTTTTG
106696163 TGAATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (19 bp):
ATTTTTATATAATTTTTGG
Found at i:106696170 original size:19 final size:19
Alignment explanation
Indices: 106696129--106696170 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
106696119 TTTGTTTAAT
* *
106696129 TTTTATATATTTTTTGGAT
1 TTTTATATAATTTTTGGAA
106696148 TTTTA-ATAATTTTTGTGAA
1 TTTTATATAATTTTTG-GAA
106696167 TTTT
1 TTTT
106696171 TTTAGAATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.67
Consensus pattern (19 bp):
TTTTATATAATTTTTGGAA
Found at i:106700498 original size:21 final size:23
Alignment explanation
Indices: 106700473--106700521 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
106700463 TTCAATTATT
106700473 TAATTAT-AATAAACT-AATTAA
1 TAATTATAAATAAACTAAATTAA
*
106700494 TAATT-TAAATAAATTAAATTAA
1 TAATTATAAATAAACTAAATTAA
*
106700516 TCATTA
1 TAATTA
106700522 AGTTATCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.04
21 12 0.52
22 10 0.43
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (23 bp):
TAATTATAAATAAACTAAATTAA
Found at i:106707477 original size:54 final size:54
Alignment explanation
Indices: 106707395--106707503 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
106707385 AGATCCTGTC
* * *
106707395 AGTTGCCCCATCATCAGCAAGCAAGCAGTCAATTCTGGATACCTGGTTTATCAA
1 AGTTGCCCCATCACCAACAAGCAAGCAGTCAATTCTCGATACCTGGTTTATCAA
* **
106707449 AGTTGCCCCATCACCAACAAGCAAGCAGTCAATTCTCGATGCCTTTTTTATCAA
1 AGTTGCCCCATCACCAACAAGCAAGCAGTCAATTCTCGATACCTGGTTTATCAA
106707503 A
1 A
106707504 TTCAACCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (54 bp):
AGTTGCCCCATCACCAACAAGCAAGCAGTCAATTCTCGATACCTGGTTTATCAA
Found at i:106722334 original size:18 final size:18
Alignment explanation
Indices: 106722311--106722403 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
106722301 CCCAACTACT
*
106722311 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* **
106722329 GTATACATGAATAGTGTC
1 GTATACGTGAATAGTACC
106722347 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
106722365 GTGTACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
106722383 GTATACGTGAATAGTATC
1 GTATACGTGAATAGTACC
106722401 GTA
1 GTA
106722404 AACGGTCGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:106724259 original size:20 final size:20
Alignment explanation
Indices: 106724231--106724270 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
106724221 TCCGACTAGA
106724231 GGATGGGTTAAACTTAATAC
1 GGATGGGTTAAACTTAATAC
*
106724251 GGATTGGTTAAACTTAATAC
1 GGATGGGTTAAACTTAATAC
106724271 AAATGGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
GGATGGGTTAAACTTAATAC
Found at i:106726738 original size:26 final size:26
Alignment explanation
Indices: 106726701--106726784 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
106726691 TGATACAAAT
* *
106726701 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
106726727 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
106726753 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
106726779 TGATAA
1 TGATAA
106726785 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:106731066 original size:18 final size:19
Alignment explanation
Indices: 106731028--106731073 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
106731018 TTATAAATAG
*
106731028 TATTATTTTCATATATCCT
1 TATTATTTTCATATATACT
106731047 TA-TATTTATCAT-TATACT
1 TATTATTT-TCATATATACT
106731065 TATTATTTT
1 TATTATTTT
106731074 ATCCTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTATTTTCATATATACT
Found at i:106737673 original size:12 final size:12
Alignment explanation
Indices: 106737656--106737683 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
106737646 GCTGAGGTAT
106737656 TTTTAATTTCTG
1 TTTTAATTTCTG
106737668 TTTTAATTTCTG
1 TTTTAATTTCTG
106737680 TTTT
1 TTTT
106737684 TTAAAAAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (12 bp):
TTTTAATTTCTG
Found at i:106737758 original size:88 final size:87
Alignment explanation
Indices: 106737578--106737843 Score: 308
Period size: 85 Copynumber: 3.0 Consensus size: 87
106737568 TGCTGAAGTA
* * *
106737578 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTTGGCTCA
1 TTTT-AATTTCTGTTTTT--AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG--GA
* *
106737643 CACGCTGAGGTATTTTTAA--TTTCTG
61 CACGCTGAGGTATTTTCAATTTTTGTG
* * * *
106737668 TTTTAATTTCTGTTTTTTAAAAAGTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTTAATTTCTG-TTTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACG
*
106737733 CTGAGGTATTGTCAATTTTTGTG
65 CTGAGGTATTTTCAATTTTTGTG
* * *
106737756 TTTTAATTTATG--TTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTCTGTTTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGC
* *
106737819 TAAGGTATTTTCAATTTCTGT-
66 TGAGGTATTTTCAATTTTTGTG
106737840 TTTT
1 TTTT
106737844 CAAATAAATC
Statistics
Matches: 153, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
84 4 0.03
85 63 0.41
86 17 0.11
88 52 0.34
89 8 0.05
90 9 0.06
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (87 bp):
TTTTAATTTCTGTTTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGC
TGAGGTATTTTCAATTTTTGTG
Found at i:106737933 original size:71 final size:72
Alignment explanation
Indices: 106737772--106738139 Score: 308
Period size: 74 Copynumber: 4.9 Consensus size: 72
106737762 TTTATGTTTC
** * * * *
106737772 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAA-TT-
* **
106737837 TGTTTTTCA
64 TGATCATCA
* *
106737846 AATAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTT
1 AA-AAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
106737911 -ATCATCA
65 GATCATCA
*
106737918 AAAAATCAACTCATATTGTGAGAGGTGAGTT-AAGCCTCAAGACCCGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAA-CCTCAAGACACGTTGAGGTATTTTCAA-TT
* *
106737982 CTGCTCAATTTA
64 -TGATC-A-TCA
* * * *
106737994 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
1 --------AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTT
* **
106738059 TCAATTTCTGTTTTTCA
58 TCAA-TT-TGATCATCA
* * ** * * *
106738076 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTT
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
106738140 TTGTGTTTTA
Statistics
Matches: 250, Mismatches: 28, Indels: 34
0.80 0.09 0.11
Matches are distributed among these distances:
70 2 0.01
71 53 0.21
72 9 0.04
73 4 0.02
74 64 0.26
75 52 0.21
76 2 0.01
82 2 0.01
84 61 0.24
85 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTG
ATCATCA
Found at i:106738018 original size:84 final size:82
Alignment explanation
Indices: 106737918--106738218 Score: 318
Period size: 74 Copynumber: 3.7 Consensus size: 82
106737908 TTTATCATCA
* * * *
106737918 AAAAATCAACTCATATTGTGAGAGGTGAGTTAAGCCTCAAGACCCGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT-
106737983 TGCTCAATTTATGTTTTTC
65 TG-TCAATTTATGTTTTTC
*
106738002 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA--TT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTT
106738065 -TC------TGTTTTTC
66 GTCAATTTATGTTTTTC
** * *
106738075 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAA--T
*
106738140 TTGTGTTTTAATTTATG--TTTC
63 TT-TG--TCAATTTATGTTTTTC
* * * **
106738161 AAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
106738219 ATCATCAAAA
Statistics
Matches: 185, Mismatches: 17, Indels: 29
0.80 0.07 0.13
Matches are distributed among these distances:
73 8 0.04
74 58 0.31
78 1 0.01
79 3 0.02
81 1 0.01
82 2 0.01
84 56 0.30
85 50 0.27
86 4 0.02
88 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (82 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTT
GTCAATTTATGTTTTTC
Found at i:106738106 original size:74 final size:74
Alignment explanation
Indices: 106737986--106738297 Score: 329
Period size: 74 Copynumber: 4.2 Consensus size: 74
106737976 CAATTTCTGC
* *
106737986 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
106738050 GAGGTATTT
66 GAGGTATTT
*
106738059 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
*
106738124 GAGGTATTG
66 GAGGTATTT
* * * *
106738133 TCAATTTTTGTGTTTTAATTTATGTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCT
1 TCAA--TTTCTG-TTT--TTCA------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * **
106738198 CAAGTCACATTGAGGTATTT
55 CAGGGCACGCTGAGGTATTT
*
106738218 T--A--TC-----ATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
106738274 TGAGGTATTT
65 TGAGGTATTT
106738284 TCAATTTCTGTTTT
1 TCAATTTCTGTTTT
106738298 AATTTCCGTG
Statistics
Matches: 193, Mismatches: 24, Indels: 42
0.75 0.09 0.16
Matches are distributed among these distances:
66 52 0.27
68 1 0.01
70 2 0.01
71 1 0.01
72 1 0.01
73 15 0.08
74 58 0.30
76 5 0.03
77 3 0.02
79 4 0.02
83 1 0.01
85 50 0.26
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (74 bp):
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTATTT
Found at i:106738256 original size:66 final size:66
Alignment explanation
Indices: 106738161--106738284 Score: 194
Period size: 66 Copynumber: 1.9 Consensus size: 66
106738151 TTTATGTTTC
* * * *
106738161 AAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTTATCATCA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTATCATCA
106738226 A
66 A
* *
106738227 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTT
106738285 CAATTTCTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (66 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTATCATCA
A
Found at i:106738379 original size:89 final size:88
Alignment explanation
Indices: 106738225--106738563 Score: 470
Period size: 89 Copynumber: 3.8 Consensus size: 88
106738215 TTTTATCATC
* * *
106738225 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTCAATT
106738290 TCTGTTTTAATTTCCGTGTTTCAA
66 TCTGTTTTAATTTCCGTGTTTC-A
* *
106738314 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTTAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTCAATT
* *
106738379 TCTGTTTTCTTCAATTTCTGTTTTTC-
66 TCTG--TT-TT-AATTTCCGTGTTTCA
* * * * *
106738405 --AACAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC-CTGTTGAGGTATTTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCAC-GATGAGGTATTTTCAAT
*
106738467 TTCTGTTTTAATTTCCATGTTTCA
65 TTCTGTTTTAATTTCCGTGTTTCA
*
106738491 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTTAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTCAATT
106738556 TCTGTTTT
66 TCTGTTTT
106738564 TCAAAAATCA
Statistics
Matches: 218, Mismatches: 23, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
85 11 0.05
86 2 0.01
87 2 0.01
88 64 0.29
89 123 0.56
91 2 0.01
92 2 0.01
93 12 0.06
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (88 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTCAATT
TCTGTTTTAATTTCCGTGTTTCA
Found at i:106738594 original size:73 final size:73
Alignment explanation
Indices: 106738493--106738795 Score: 291
Period size: 73 Copynumber: 3.9 Consensus size: 73
106738483 ATGTTTCAAA
* * * *
106738493 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
106738558 TGTTTTTC
66 TGTTTTTC
* * * *
106738566 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
106738631 TGTTTTCTTC
66 TG-TTT-TTC
** * *** * *
106738641 AATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGCTGAGTTGAGCCTCAGGGCATGCTGAG
1 AA---A----AATC--AACTCA--T-ATTGCGAGAG-G-TGAGTTGAGCCTCAGGGCACGCTGAG
*
106738706 GTATTTTCAATTTCTGCTTTTC
52 GTATTTTCAATTTCTGTTTTTC
*
106738728 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
106738793 CTG
65 CTG
106738796 CTTTCCAATT
Statistics
Matches: 186, Mismatches: 27, Indels: 33
0.76 0.11 0.13
Matches are distributed among these distances:
73 60 0.32
74 43 0.23
75 6 0.03
76 6 0.03
77 1 0.01
78 1 0.01
79 5 0.03
81 2 0.01
82 2 0.01
84 5 0.03
85 1 0.01
86 1 0.01
87 9 0.05
88 5 0.03
89 39 0.21
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Done.