Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 327 of 344
Found at i:106738640 original size:250 final size:243
Alignment explanation
Indices: 106737918--106739218 Score: 881
Period size: 250 Copynumber: 5.3 Consensus size: 243
106737908 TTTATCATCA
* * * ** *
106737918 AAAAATCAACTCATATTGTGAGAGGTGAGTTAAGCCTCAAGACCCGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
* *
106737983 TGCTCAATTT-ATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
66 TGCT---TTTCA--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCAC
* * *
106738047 GCTGAGG-T-A---T-TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
120 GATGAGGTTCATTCTCTTTCAATTTCTGCTCTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * *
106738106 TGAGCCTCGGGGCACGCTGAGGT-ATTGTCAATTTTTGTGTT-TT-AATTTATG--TTTC
185 TGAGCCTCAGGACACGCTGAGGTAATT-TCAATTTCTGTTTTCTTCAATTTATGTTTTTC
* * *
106738161 AAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACAT--TGAGGTATTTT--A--
1 AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAG--ACATGCTGAGGTATTTTCAATT
* * *
106738220 TCAT-C----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
64 TC-TGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGATGAGG-
* * *
106738280 ATTTTCAATTTCTGTTTTAATTTCCGTG-T-TTCAAAAAAAAATCAGCTCATATTGCGAGAGGTG
127 ---TTC-A-TTCTCTTTCAATTT-C-TGCTCTTC---AAAAAATCAACTCATATTGCGAGAGGTG
* * * * * *
106738343 AGTTGAACCTCAGGTCACGATGAGGTATTTTTAATTTCTGTTTTCTTCAATTTCTGTTTTTC
182 AGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCTTCAATTTATGTTTTTC
* * * *
106738405 AACAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCTGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
*
106738470 TGTTTTAATTTCCATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGT
66 TG----------C-T-TTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGG
* *
106738535 CACGATGAGG-T-A-T-T-TTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTG
117 CACGATGAGGTTCATTCTCTTTCAATTTCTGCTCTTCAAAAAATCAACTCATATTGCGAGAGGTG
* *
106738593 AGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTCTGTTTTCTTCAATTTATGTTTTTC
182 AGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCTTCAATTTATGTTTTTC
* * *
106738655 AAAAATCAGCTCATATTGCGAGAGCTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
* *
106738720 TGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATT
66 TGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGATGAGG----
*
106738785 TTCGATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTA
127 TTC-A-TTCT-CTTT-CAATTTCTGCTCTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
106738850 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-----------TT-TG---TT-
187 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCTTCAATTTATGTTTTTC
* * * * * *
106738891 AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGTTGAGATCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAG---ACATGCTGAGGTATTTTCAAT
* * *
106738955 TTCTGTTTTTCAATTTCTGTGCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
63 TTCTG-----C---TT-T-T-CA-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGG
* * * * * *
106739020 ACACGCTAAGGTATTTTCAATTGATGTTTTTTTCAATTTAC-GCTTTTC-AAAAATCAACTCATA
116 GCACGATGAGG----TTC-----AT-TCTCTTTCAATTT-CTGCTCTTCAAAAAATCAACTCATA
* * * **
106739083 TTACGAGAGGTGAGTTGAGCCTCGGGGA-ACGCTGAGGTATTTTCAATTAATGTTTT-TTCAATT
170 TTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAATTTCTGTTTTCTTCAATT
*
106739146 TATGCTTTTC
234 TATGTTTTTC
* * * ** *
106739156 AAAAATCAACTCATATTACGAGCGTTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAG--ACATGCTGAGGTATTTTCAA
106739219 AATCTGTTTG
Statistics
Matches: 875, Mismatches: 76, Indels: 192
0.77 0.07 0.17
Matches are distributed among these distances:
225 51 0.06
230 1 0.00
232 1 0.00
233 1 0.00
235 2 0.00
236 86 0.10
237 13 0.01
238 28 0.03
239 6 0.01
240 64 0.07
241 8 0.01
242 10 0.01
243 52 0.06
244 53 0.06
245 3 0.00
246 4 0.00
247 2 0.00
248 6 0.01
249 2 0.00
250 264 0.30
251 3 0.00
252 78 0.09
253 7 0.01
254 12 0.01
255 3 0.00
256 1 0.00
257 1 0.00
258 1 0.00
259 1 0.00
260 2 0.00
261 3 0.00
264 2 0.00
265 52 0.06
266 52 0.06
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (243 bp):
AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
TGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGATGAGGTTCA
TTCTCTTTCAATTTCTGCTCTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
ACACGCTGAGGTAATTTCAATTTCTGTTTTCTTCAATTTATGTTTTTC
Found at i:106738643 original size:16 final size:16
Alignment explanation
Indices: 106738622--106738652 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106738612 CTGAGGTAAT
*
106738622 TTCAATTTCTGTTTTC
1 TTCAATTTATGTTTTC
106738638 TTCAATTTATGTTTT
1 TTCAATTTATGTTTT
106738653 TCAAAAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.13, G:0.06, T:0.65
Consensus pattern (16 bp):
TTCAATTTATGTTTTC
Found at i:106738703 original size:89 final size:90
Alignment explanation
Indices: 106738552--106738727 Score: 291
Period size: 89 Copynumber: 2.0 Consensus size: 90
106738542 AGGTATTTTT
* *
106738552 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGACATGCTGAG
106738617 GTAATTTCAATTTCTG-TTTTCTTC
66 GTAATTTCAATTTCTGCTTTTCTTC
* * *
106738641 AATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGCTGAGTTGAGCCTCAGGGCATGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGACATGCTGAG
*
106738706 GTATTTTCAATTTCTGCTTTTC
66 GTAATTTCAATTTCTGCTTTTC
106738728 AAAAAATCAA
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 75 0.94
90 5 0.06
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (90 bp):
AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGACATGCTGAG
GTAATTTCAATTTCTGCTTTTCTTC
Found at i:106738778 original size:74 final size:73
Alignment explanation
Indices: 106738638--106738799 Score: 261
Period size: 74 Copynumber: 2.2 Consensus size: 73
106738628 TTCTGTTTTC
* * * *
106738638 TTCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGCTGAGTTGAGCCTCAGGGCATGCT
1 TTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGGCACGCT
106738703 GAGGTATT
66 GAGGTATT
*
106738711 TTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
1 TTCAATTTCTGCTTTTC-AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGGCACGC
106738776 TGAGGTATT
65 TGAGGTATT
*
106738785 TTCGATTTCTGCTTT
1 TTCAATTTCTGCTTT
106738800 CCAATTTCTG
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
73 15 0.18
74 67 0.82
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (73 bp):
TTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGGCACGCT
GAGGTATT
Found at i:106738831 original size:413 final size:407
Alignment explanation
Indices: 106738227--106739130 Score: 1051
Period size: 413 Copynumber: 2.2 Consensus size: 407
106738217 TTATCATCAA
106738227 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
*
106738292 TGTTTTAATTTCCGTGTTTCAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGG
66 TG--------T-CGTGTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGG
* * * * * *
106738357 TCACGATGAGGTATTTTTAATTTCTGTTTTCTTCAATTTCTGTTTTTCAACAATCAACTCATATT
120 GCACGATGAGGTATTTTCAATTTCTGCTTTC-TCAATTTCTGCTCTTCAAAAATCAACTCATATT
* * *
106738422 GCGAGAGGTGAGTTGAGCCTCAAGAC-CTGTTGAGGTATTTTCAATTTCTGTTTTAATTTCCATG
184 GCGAGAGGTGAGTTAAGCCTCAAGACAC-GCTGAGGTAATTTCAATTTCTG-------TT---TG
* *
106738486 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGG-TCAC-GATGAGGTATT
238 -TT----AAAAATCAACTCATATCGCGAGAGGTGAGTTGAACCTC-GGCTCACAGATGAGATATT
*
106738549 TTTAATTTCTG-TTT-T-T-CA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
297 TTCAATTTCTGTTTTCTGTGCACAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
* * ** * *
106738609 ATGCTGAGGTAATTTCAATTTCTGTTTTCTTCAATTTATGTTTTTC
362 ACGCTAAGGTAATTTCAATTGATGTTTTCTTCAATTTACGCTTTTC
* * *
106738655 AAAAATCAGCTCATATTGCGAGAGCTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
* *
106738720 TG-C-T-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
66 TGTCGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGATGAGG
*
106738781 TATTTTCGATTTCTGCTTTC-CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTG
131 TATTTTCAATTTCTGCTTTCTCAATTTCTGCTCTTC--AAAAATCAACTCATATTGCGAGAGGTG
*
106738845 AGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTTAAAAATCAACTCATATCGC
194 AGTTAAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTTAAAAATCAACTCATATCGC
* * *
106738910 GAGAGGTGAGTTGAGCCTCGGCTCACATGTTGAGATCTTTTCAATTTCTGTTTTTCAATTTCTGT
259 GAGAGGTGAGTTGAACCTCGGCTCACA-GATGAGATATTTTCAATTTCTG----T---TTTCTGT
*
106738975 GCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTAAGGTATTTTCAA
316 GCA-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAA
*
106739040 TTGATGTTTTTTTCAATTTACGCTTTTC
380 TTGATGTTTTCTTCAATTTACGCTTTTC
* * *
106739068 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGAACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
106739131 AATGTTTTTT
Statistics
Matches: 420, Mismatches: 37, Indels: 53
0.82 0.07 0.10
Matches are distributed among these distances:
397 2 0.00
398 40 0.10
400 18 0.04
402 2 0.00
403 2 0.00
406 2 0.00
408 3 0.01
409 1 0.00
410 1 0.00
411 15 0.04
413 263 0.63
414 1 0.00
416 4 0.01
417 1 0.00
418 1 0.00
428 64 0.15
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35
Consensus pattern (407 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
TGTCGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGATGAGG
TATTTTCAATTTCTGCTTTCTCAATTTCTGCTCTTCAAAAATCAACTCATATTGCGAGAGGTGAG
TTAAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTTAAAAATCAACTCATATCGCGA
GAGGTGAGTTGAACCTCGGCTCACAGATGAGATATTTTCAATTTCTGTTTTCTGTGCACAAAATC
AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTGATGTTTTC
TTCAATTTACGCTTTTC
Found at i:106738864 original size:89 final size:88
Alignment explanation
Indices: 106738713--106738884 Score: 290
Period size: 89 Copynumber: 1.9 Consensus size: 88
106738703 GAGGTATTTT
* * *
106738713 CAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTG
1 CAATTTCTGCTCTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTG
* *
106738778 AGGTATTTTCGATTTCTGCTTTC
66 AGGTAATTTCAATTTCTGCTTTC
106738801 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCT
1 CAATTTCTGCTCTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCT
106738866 GAGGTAATTTCAATTTCTG
65 GAGGTAATTTCAATTTCTG
106738885 TTTGTTAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
88 14 0.18
89 64 0.82
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (88 bp):
CAATTTCTGCTCTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTG
AGGTAATTTCAATTTCTGCTTTC
Found at i:106738966 original size:14 final size:14
Alignment explanation
Indices: 106738947--106738974 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106738937 TGTTGAGATC
106738947 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
106738961 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
106738975 GCATCAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:106739017 original size:161 final size:161
Alignment explanation
Indices: 106738388--106739227 Score: 854
Period size: 161 Copynumber: 5.1 Consensus size: 161
106738378 TTCTGTTTTC
* * *
106738388 TTCAATTTCTGTTTTTCAACAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCTGTT
1 TTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCT
* **
106738453 GAGGTATTTTCAATTTCTG-TTTT-AATTTCCATGTTTCAAAAAAAATCAACTCATATTGCGAGA
66 GAGGTATTTTCAATTTCTGTTTTTCAATTT-C-TGCTTCATCAAAAATCAACTCATATTGCGAGA
* * *
106738516 GGTGAGTTGAACCTCAGGTCACGATGAGGTATT
129 GGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
*
106738549 TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCT
1 TTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCT
* * ** *
106738614 GAGGTAATTTCAATTTCTGTTTTCTTCAATTTATG-TTTTTCAAAAATCAGCTCATATTGCGAGA
66 GAGGTATTTTCAATTTCTG-TTT-TTCAATTTCTGCTTCATCAAAAATCAACTCATATTGCGAGA
* * *
106738678 GCTGAGTTGAGCCTCAGGGCATGCTGAGGTATT
129 GGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
* * * *
106738711 TTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
1 TTCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGC
* * * *
106738776 TGAGGTATTTTCGATTTCTGCTTTCCAATTTCTGCTCTTCA-AAAAAATCAACTCATATTGCGAG
65 TGAGGTATTTTCAATTTCTGTTTTTCAATTTCTG--CTTCATCAAAAATCAACTCATATTGCGAG
* *
106738840 AGGTGAGTTAAGCCTCAGGACACGCTGAGGTAAT
128 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
* *
106738874 TTCAATTTCTGTTTGTT-AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC-GGCTCACA
1 TTCAATTTCTGTTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACA
* * * *
106738937 TGTTGAGATCTTTTCAATTTCTGTTTTTCAATTTCTG-TGCATC-AAAATCAACTCATATTGCGA
62 TGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTTCATCAAAAATCAACTCATATTGCGA
* *
106739000 GAGGTGAGTTGAGCCTCAAGACACGCTAAGGTATT
127 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
* *
106739035 TTCAATTGATGTTTTTTTCAATTTACGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTG
1 TTC-A---A------TTTC----T--GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
** * ** * *
106739100 AGCCTCGGGGA-ACGCTGAGGTATTTTCAATTAATGTTTTTTCAATTTATGCTT-TTCAAAAATC
50 AGCCTC-AAGACATGCTGAGGTATTTTCAATTTCTG-TTTTTCAATTTCTGCTTCATCAAAAATC
* * * * * *
106739163 AACTCATATTACGAGCGTTGAGTTGAGCCTCGGGTCACATGCCGAGGTATT
113 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATT
**
106739214 TTCAAAATCTGTTT
1 TTCAATTTCTGTTT
106739228 GGAAAATTCT
Statistics
Matches: 568, Mismatches: 74, Indels: 72
0.80 0.10 0.10
Matches are distributed among these distances:
161 147 0.26
162 107 0.19
163 132 0.23
164 38 0.07
165 7 0.01
169 2 0.00
171 4 0.01
175 20 0.04
176 18 0.03
177 75 0.13
178 1 0.00
179 17 0.03
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (161 bp):
TTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCT
GAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTTCATCAAAAATCAACTCATATTGCGAGAGG
TGAGTTGAGCCTCAGGACACGCTGAGGTATT
Found at i:106739052 original size:88 final size:87
Alignment explanation
Indices: 106738873--106739277 Score: 369
Period size: 88 Copynumber: 4.6 Consensus size: 87
106738863 GCTGAGGTAA
* **
106738873 TTTCAATTTCTG-TTTGTTAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTCAATTTCTGCTTT-TCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG---ACA
* * * * * *
106738937 TGTTGAGATCTTTTCAATT-TCTGTT
62 CGCTGAGGTATTTTCAATTATGTTTT
** * *
106738962 TTTCAATTTCTG-TGCATC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGCT-TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GGACACG
*
106739025 CTAAGGTATTTTCAATTGATGTTTT
64 CTGAGGTATTTTCAATT-ATGTTTT
106739050 TTTCAATTTAC-GCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGA-AC
1 TTTCAATTT-CTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC--GGACAC
106739113 GCTGAGGTATTTTCAATTAATG-TTT
63 GCTGAGGTATTTTCAATT-ATGTTTT
* * * *
106739138 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGCGTTGAGTTGAGCCTCGGGTCACAT
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GG--ACAC
* * * *
106739203 GCCGAGGTATTTTCAA-AATCTGTT
63 GCTGAGGTATTTTCAATTATGTTTT
*** * * *
106739227 TGGAAAATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
106739278 TCTTTGCTCA
Statistics
Matches: 267, Mismatches: 36, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
86 17 0.06
87 3 0.01
88 144 0.54
89 85 0.32
90 18 0.07
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (87 bp):
TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGACACGCT
GAGGTATTTTCAATTATGTTTT
Found at i:106739104 original size:89 final size:88
Alignment explanation
Indices: 106738980--106739194 Score: 333
Period size: 89 Copynumber: 2.4 Consensus size: 88
106738970 TCTGTGCATC
* *
106738980 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AAGACACGCTAAGGTATTTTCAATTGA
1 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGAAGA-ACGCTAAGGTATTTTCAATTAA
106739044 TGTTTTTTTCAATTTACGCTTTTCA
65 TG-TTTTTTCAATTTACGCTTTTCA
** *
106739069 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGAACGCTGAGGTATTTTCAATTAAT
1 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGAAGAACGCTAAGGTATTTTCAATTAAT
*
106739134 GTTTTTTCAATTTATGCTTTTCA
66 GTTTTTTCAATTTACGCTTTTCA
* *
106739157 AAAATCAACTCATATTACGAGCGTTGAGTTGAGCCTCG
1 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCG
106739195 GGTCACATGC
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
88 57 0.49
89 58 0.50
90 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (88 bp):
AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGAAGAACGCTAAGGTATTTTCAATTAAT
GTTTTTTCAATTTACGCTTTTCA
Found at i:106739302 original size:88 final size:89
Alignment explanation
Indices: 106739151--106739363 Score: 218
Period size: 88 Copynumber: 2.4 Consensus size: 89
106739141 CAATTTATGC
* * * *
106739151 TTTTCAAAAATCAACTCATATTACGAG-CGTTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TT
1 TTTTCAAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGCTCACATGCCGAGCTATTT
*
106739214 TTCAAAATCTGTTTGGAAAAT-TCT-G
65 TTCAAAATCTGTTT-G-AAATGCCTAG
* ** * *
106739239 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGTCTTTGCTCACGTGCTGAGCTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCGAGCTATTTT
** *
106739304 TCAATTTCTGTTTGTAATGCCTAG
66 TCAAAATCTGTTTGAAATGCCTAG
* * * *
106739328 TTTTTAAAAGTCAATTCATATTGCGAGAAATGAGTT
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTT
106739364 AAGCTCAGGA
Statistics
Matches: 104, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
87 3 0.03
88 53 0.51
89 48 0.46
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (89 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCGAGCTATTTT
TCAAAATCTGTTTGAAATGCCTAG
Found at i:106742430 original size:22 final size:20
Alignment explanation
Indices: 106742389--106742458 Score: 65
Period size: 19 Copynumber: 3.5 Consensus size: 20
106742379 ATAATAATAT
106742389 AAAATAATAATATGTACATA
1 AAAATAATAATATGTACATA
*
106742409 AAAATACATATATATGTGCAT-
1 AAAATA-ATA-ATATGTACATA
*
106742430 ATAATAA-AAGTATGTA-ATA
1 AAAATAATAA-TATGTACATA
*
106742449 ATAATAATAA
1 AAAATAATAA
106742459 CAATATCTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
18 3 0.07
19 13 0.31
20 9 0.21
21 8 0.19
22 9 0.21
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (20 bp):
AAAATAATAATATGTACATA
Found at i:106742560 original size:19 final size:21
Alignment explanation
Indices: 106742536--106742583 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
106742526 ACAATAATAT
106742536 AAAATA-AT-GATATGTACAA
1 AAAATATATAGATATGTACAA
* *
106742555 AAAATATATATATATGTACAT
1 AAAATATATAGATATGTACAA
106742576 AAAATATA
1 AAAATATA
106742584 CAGTAATGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.24
20 2 0.08
21 17 0.68
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (21 bp):
AAAATATATAGATATGTACAA
Found at i:106742592 original size:21 final size:21
Alignment explanation
Indices: 106742545--106742597 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
106742535 TAAAATAATG
* *
106742545 ATATGTACAAAAAATATATAT
1 ATATGTACATAAAATATACAT
106742566 ATATGTACATAAAATATACAGT
1 ATATGTACATAAAATATACA-T
106742588 A-ATGTA-ATAA
1 ATATGTACATAA
106742598 TAATTATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 4 0.14
21 23 0.79
22 2 0.07
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.32
Consensus pattern (21 bp):
ATATGTACATAAAATATACAT
Found at i:106742796 original size:11 final size:11
Alignment explanation
Indices: 106742769--106742811 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
106742759 TTGCATTAAA
*
106742769 AAAATATATAC
1 AAAATATATAT
*
106742780 ATAATATATAT
1 AAAATATATAT
*
106742791 AAAATACATAT
1 AAAATATATAT
*
106742802 AATATATATA
1 AAAATATATA
106742812 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:106744815 original size:75 final size:74
Alignment explanation
Indices: 106744431--106745237 Score: 1040
Period size: 75 Copynumber: 10.8 Consensus size: 74
106744421 AGTGTGTGAT
*
106744431 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAAT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAA-ACAGAAATTGAAAAT
*
106744496 ACCTCAGCATGTGAAC
62 ACCTCAGC--GTG-TC
* *
106744512 C-AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
106744576 CAACGTGTC
66 CAGCGTGTC
* ** * *
106744585 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
106744648 CAGCGTGTC
66 CAGCGTGTC
* *
106744657 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACC
*
106744721 TCAGCATGTC
65 TCAGCGTGTC
* * ** * * *
106744731 TTAAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACC
106744796 TCAGCGTGTC
65 TCAGCGTGTC
*
106744806 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAA-ACAGAAATTGAAAATAC
*
106744871 CTCAGCATGTGAAC
64 CTCAGC--GTG-TC
*
106744885 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
106744949 CA-CGTGTC
66 CAGCGTGTC
* ** * *
106744957 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
106745020 CAGCGTGTC
66 CAGCGTGTC
*
106745029 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACA-AAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACC
*
106745092 TCAGCATGTC
65 TCAGCGTGTC
* ** * * * *
106745102 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTACAACAGAAATTGAAATTACT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACC
106745167 TCAGCGTGTC
65 TCAGCGTGTC
* *
106745177 CTGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
106745238 ACGGAAATTG
Statistics
Matches: 638, Mismatches: 71, Indels: 40
0.85 0.09 0.05
Matches are distributed among these distances:
71 28 0.04
72 103 0.16
73 103 0.16
74 102 0.16
75 140 0.22
76 73 0.11
77 21 0.03
78 35 0.05
79 2 0.00
80 30 0.05
81 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:106745050 original size:372 final size:372
Alignment explanation
Indices: 106744431--106745381 Score: 1573
Period size: 371 Copynumber: 2.5 Consensus size: 372
106744421 AGTGTGTGAT
*
106744431 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAAT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTGAAAGACAGAAATTGAAAAT
106744496 ACCTCAGCATGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAG
65 ACCTCAGCATGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAG
106744561 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
130 AAATTGAAAATACCTC-ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
106744626 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
194 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
106744691 ATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAA
259 ATTTTTTGAAAGAC-AAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAA
106744756 TATGAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTC
323 TATGAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTC
106744806 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT-AAAGACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAATA
*
106744870 CCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGA
66 CCTCAGCATGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGA
106744935 AATTGAAAATACCTCACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAA
131 AATTGAAAATACCTCACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAA
106745000 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
196 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
106745065 TTTTTGAAAGACAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATAT
261 TTTTTGAAAGACAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATAT
*
106745130 GAGTTGATTTTTTTTTACAACAGAAATTGAAATTACTTCAGCGTGTC
326 GAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTC
* * *
106745177 CTGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGG
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT------------TTGAAAGACAG
* * * * *
106745242 AAATTGAAAATACCTCGGCGTGTG-ACCTAAGGCTCAACTCGCCTCTCGTAATACAAGTTGATTT
54 AAATTGAAAATACCTCAGCATGTGAACC-AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
* * * **
106745306 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
118 TTTTGAAAACAGAAATTGAAAATACCTCA-CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
106745371 AGTTGATTTTT
182 AGTTGAATTTT
106745382 TTAAGAATAC
Statistics
Matches: 542, Mismatches: 19, Indels: 20
0.93 0.03 0.03
Matches are distributed among these distances:
371 139 0.26
372 127 0.23
373 99 0.18
374 9 0.02
375 34 0.06
383 5 0.01
384 87 0.16
385 42 0.08
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (372 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAATA
CCTCAGCATGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGA
AATTGAAAATACCTCACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAA
AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGAAAGACAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATAT
GAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTC
Found at i:106745305 original size:91 final size:88
Alignment explanation
Indices: 106745152--106745326 Score: 226
Period size: 91 Copynumber: 2.0 Consensus size: 88
106745142 TTTTACAACA
* * * * **
106745152 GAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTT
106745217 TTGA-AAGGCAGAAATTGAAAAACG
66 TTGACAA--CAGAAATTGAAAAACG
* * *
106745241 GAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGTAATACAAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTT
106745306 TTTTGACAACAGAAATTGAAA
64 TTTTGACAACAGAAATTGAAA
106745327 TTACCTCAGC
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
89 21 0.28
90 12 0.16
91 39 0.53
92 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTT
TTGACAACAGAAATTGAAAAACG
Found at i:106745349 original size:165 final size:164
Alignment explanation
Indices: 106745078--106745383 Score: 470
Period size: 165 Copynumber: 1.9 Consensus size: 164
106745068 TTGAAAGACA
* * ** **
106745078 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGTCCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTT
* * *
106745143 TTTACAACAGAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCCACTCACCTCTCGCAATATGAG
66 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
106745208 TTGATTTTTTTGAAAGGCAGAAATTGAAAAACGG
131 TTGATTTTTTTGAAAGGCAGAAATTGAAAAACGG
* * * *
106745242 AAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGTAATACAAGTTGA-TTT
1 AAATTGAAAATACCTCAGCATGT--CCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
106745306 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
64 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
106745371 AGTTGATTTTTTT
129 AGTTGATTTTTTT
106745384 AAGAATACCT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
164 21 0.17
165 78 0.61
166 28 0.22
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (164 bp):
AAATTGAAAATACCTCAGCATGTCCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTT
TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAGGCAGAAATTGAAAAACGG
Found at i:106745383 original size:76 final size:75
Alignment explanation
Indices: 106745241--106745383 Score: 207
Period size: 74 Copynumber: 1.9 Consensus size: 75
106745231 TTGAAAAACG
* * *
106745241 GAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGTAATACAAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTT
106745306 TTTTGACAACA
65 TTTTGACAACA
* * **
106745317 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
106745381 TTT
66 TTT
106745384 AAGAATACCT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 38 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
TTTGACAACA
Found at i:106745853 original size:17 final size:18
Alignment explanation
Indices: 106745828--106745861 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
106745818 ATATCACTCT
106745828 TTTGCCCTTG-GTTGAGC
1 TTTGCCCTTGCGTTGAGC
*
106745845 TTTGTCCTTGCGTTGAG
1 TTTGCCCTTGCGTTGAG
106745862 GCTCTTGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.06, C:0.21, G:0.29, T:0.44
Consensus pattern (18 bp):
TTTGCCCTTGCGTTGAGC
Found at i:106752922 original size:24 final size:24
Alignment explanation
Indices: 106752894--106752943 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
106752884 ATGAAAGTTT
* *
106752894 AATGCCAATG-ATGTAATGCAATGC
1 AATGCAAATGTATGGAATG-AATGC
106752918 AATGCAAATGTATGGAATGAATGC
1 AATGCAAATGTATGGAATGAATGC
106752942 AA
1 AA
106752944 AAGAAAGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (24 bp):
AATGCAAATGTATGGAATGAATGC
Found at i:106755378 original size:19 final size:19
Alignment explanation
Indices: 106755356--106755438 Score: 55
Period size: 19 Copynumber: 4.2 Consensus size: 19
106755346 ATAATAATAT
106755356 AAAATAATAATATGTACAA
1 AAAATAATAATATGTACAA
* *
106755375 AAAATACATATATATAG-GCAT
1 AAAATA-ATA-ATAT-GTACAA
*
106755396 ATAATAA-AAGTATGTA-AA
1 AAAATAATAA-TATGTACAA
*
106755414 AATAATAATAATATCTACAA
1 AA-AATAATAATATGTACAA
106755434 TAAAA
1 -AAAA
106755439 GAAAATATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 17
0.67 0.10 0.24
Matches are distributed among these distances:
18 4 0.08
19 20 0.42
20 10 0.21
21 13 0.27
22 1 0.02
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (19 bp):
AAAATAATAATATGTACAA
Found at i:106759069 original size:26 final size:26
Alignment explanation
Indices: 106759038--106759171 Score: 232
Period size: 26 Copynumber: 5.2 Consensus size: 26
106759028 TGAAATTCCC
*
106759038 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
106759064 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
106759090 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
106759116 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
106759142 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
106759168 ATCA
1 ATCA
106759172 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:106759970 original size:18 final size:18
Alignment explanation
Indices: 106759946--106759991 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
106759936 TTATAAATAG
*
106759946 TATTATTTTCATATATCCT
1 TATTATTTTCAT-TATACT
106759965 TA-TATTTATCATTATACT
1 TATTATTT-TCATTATACT
106759983 TATTATTTT
1 TATTATTTT
106759992 ATCCTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTATTTTCATTATACT
Found at i:106764696 original size:24 final size:24
Alignment explanation
Indices: 106764636--106764706 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 24
106764626 CCTCGTCTCT
* *
106764636 GGAACATGGTCTTTCGGTACATGA
1 GGAACATGGTCTCTCGGCACATGA
* * * *
106764660 GGAGCTTGCTCTCTCGGCCCATGA
1 GGAACATGGTCTCTCGGCACATGA
* *
106764684 GGAACGTGGTCTCTCAGCACATG
1 GGAACATGGTCTCTCGGCACATG
106764707 CGGACGATGT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (24 bp):
GGAACATGGTCTCTCGGCACATGA
Found at i:106767913 original size:12 final size:12
Alignment explanation
Indices: 106767896--106767926 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
106767886 GTGAATAAAG
106767896 AAGATAAATGGA
1 AAGATAAATGGA
106767908 AAGAT-AATGGA
1 AAGATAAATGGA
106767919 AAGATAAA
1 AAGATAAA
106767927 ACGTGGCGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.23, T:0.16
Consensus pattern (12 bp):
AAGATAAATGGA
Found at i:106770579 original size:20 final size:20
Alignment explanation
Indices: 106770556--106770593 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
106770546 AAATTTTTGG
106770556 ATTTTTGAAATTTATTTTTA
1 ATTTTTGAAATTTATTTTTA
106770576 ATTTTTGAAATTTATTTT
1 ATTTTTGAAATTTATTTT
106770594 GAACTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
ATTTTTGAAATTTATTTTTA
Found at i:106771896 original size:17 final size:17
Alignment explanation
Indices: 106771865--106771907 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
106771855 AAATTTAAAC
106771865 ATTTT-ATTAAAATAAT
1 ATTTTAATTAAAATAAT
*
106771881 ATTTTAATTAAGATAAT
1 ATTTTAATTAAAATAAT
*
106771898 -TTTTATTTAA
1 ATTTTAATTAA
106771908 TAAATTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
ATTTTAATTAAAATAAT
Found at i:106771907 original size:16 final size:16
Alignment explanation
Indices: 106771865--106771904 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
106771855 AAATTTAAAC
106771865 ATTTTATTAAAATAAT
1 ATTTTATTAAAATAAT
*
106771881 ATTTTAATTAAGATAAT
1 ATTTT-ATTAAAATAAT
106771898 -TTTTATT
1 ATTTTATT
106771905 TAATAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 9 0.41
17 10 0.45
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
ATTTTATTAAAATAAT
Found at i:106774934 original size:11 final size:11
Alignment explanation
Indices: 106774912--106774941 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
106774902 TTAATGATTA
106774912 AAAATGAAAAAT
1 AAAAT-AAAAAT
106774924 AAAATAAAAAT
1 AAAATAAAAAT
106774935 AAAATAA
1 AAAATAA
106774942 TTTTCTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:106777300 original size:137 final size:137
Alignment explanation
Indices: 106777054--106777340 Score: 511
Period size: 137 Copynumber: 2.1 Consensus size: 137
106777044 CATTGGGCCT
** *
106777054 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATTACAATAAACTAGGCCTT
106777119 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAAAACATGCAACATCAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAAAACATGCAACATCAATAAA
106777184 CATATGC
131 CATATGC
*
106777191 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATTACAATAAACTAGGCCTT
* * *
106777256 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCTCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAAAACATGCAACATCAATAAA
106777321 CATATGC
131 CATATGC
106777328 AAGCCCATTTGGG
1 AAGCCCATTTGGG
106777341 GAGACTACTC
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 143 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATTACAATAAACTAGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAAAACATGCAACATCAATAAA
CATATGC
Found at i:106779234 original size:26 final size:26
Alignment explanation
Indices: 106779125--106779226 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
106779115 CATGAAATTC
106779125 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
106779151 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
106779177 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
106779203 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
106779227 TTTTATCAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:106784817 original size:21 final size:21
Alignment explanation
Indices: 106784793--106784845 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
106784783 CATTGTTTCT
106784793 AATCTCACCGCTACAGT-ATCC
1 AATCTCACCGCTACAGTAAT-C
*
106784814 AATCTCACCGCTACAGTAATT
1 AATCTCACCGCTACAGTAATC
106784835 AATCTCACCGC
1 AATCTCACCGC
106784846 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAATC
Found at i:106786093 original size:22 final size:20
Alignment explanation
Indices: 106786063--106786104 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
106786053 TCTCCAAATT
106786063 TTTAATAAACAAAAAACCCAA
1 TTTAATAAA-AAAAAACCCAA
*
106786084 TTTATATAAAAGAAAACCCAA
1 TTTA-ATAAAAAAAAACCCAA
106786105 ACCTTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.60, C:0.17, G:0.02, T:0.21
Consensus pattern (20 bp):
TTTAATAAAAAAAAACCCAA
Found at i:106796387 original size:19 final size:20
Alignment explanation
Indices: 106796363--106796402 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
106796353 CTATTTGATT
* *
106796363 ATTTTATTAGTTATAT-TAA
1 ATTTTAATAGTAATATATAA
106796382 ATTTTAATAGTAATATATAA
1 ATTTTAATAGTAATATATAA
106796402 A
1 A
106796403 AAAAATTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
ATTTTAATAGTAATATATAA
Found at i:106800979 original size:26 final size:26
Alignment explanation
Indices: 106800943--106801024 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
106800933 CATGAAATTC
106800943 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
106800969 TTATCATGAAACATTTACGTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
106800995 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
106801021 TTAT
1 TTAT
106801025 TAATTTGTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:106802085 original size:14 final size:13
Alignment explanation
Indices: 106802056--106802090 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
106802046 TAAGAATCAA
*
106802056 TTTATTAAAATTT
1 TTTATTAAAATAT
106802069 TTTATTATAAATAT
1 TTTATTA-AAATAT
106802083 TTTATTAA
1 TTTATTAA
106802091 TTATATGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTATTAAAATAT
Found at i:106804743 original size:21 final size:22
Alignment explanation
Indices: 106804717--106804763 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
106804707 CTCTGCTCAA
*
106804717 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
106804738 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
106804760 ACTC
1 ACTC
106804764 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:106812997 original size:31 final size:30
Alignment explanation
Indices: 106812927--106813007 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 30
106812917 TGGCGTGGAG
* *
106812927 GGCTTAATTGATTTATTATTATTATTTTACGA
1 GGCTTAATTGATTT-TTA-TAGTATTTTAGGA
106812959 GGTCTTAATTGACTTTTTA-AGTATTTTAGGA
1 GG-CTTAATTGA-TTTTTATAGTATTTTAGGA
*
106812990 GAGCTTAATTCATTTTTA
1 G-GCTTAATTGATTTTTA
106813008 GGGATTATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
30 6 0.14
31 19 0.44
32 3 0.07
33 12 0.28
34 3 0.07
ACGTcount: A:0.27, C:0.07, G:0.15, T:0.51
Consensus pattern (30 bp):
GGCTTAATTGATTTTTATAGTATTTTAGGA
Found at i:106813042 original size:10 final size:10
Alignment explanation
Indices: 106813027--106813061 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
106813017 TAACACTTTC
106813027 AAAAATTATA
1 AAAAATTATA
*
106813037 AAAAATAATA
1 AAAAATTATA
*
106813047 AAAATTTATA
1 AAAAATTATA
106813057 AAAAA
1 AAAAA
106813062 GCAATAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
AAAAATTATA
Found at i:106813544 original size:30 final size:29
Alignment explanation
Indices: 106813484--106813555 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
106813474 TTCAATAAGC
* * *
106813484 TTTTCTAACTTTTTTATTAATTTTTATAA
1 TTTTCTATCATTTTAATTAATTTTTATAA
*
106813513 TTTTTTATCATTTTAATTAATTTTATATAA
1 TTTTCTATCATTTTAATTAATTTT-TATAA
106813543 TTTTCTATCATTT
1 TTTTCTATCATTT
106813556 CTAGATTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 20 0.54
30 17 0.46
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTCTATCATTTTAATTAATTTTTATAA
Found at i:106813555 original size:10 final size:10
Alignment explanation
Indices: 106813495--106813546 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
106813485 TTTCTAACTT
106813495 TTTTAT-TAA
1 TTTTATATAA
106813504 TTTT-TATAA
1 TTTTATATAA
* *
106813513 TTTTTTATCA
1 TTTTATATAA
106813523 TTTTA-ATTAA
1 TTTTATA-TAA
106813533 TTTTATATAA
1 TTTTATATAA
106813543 TTTT
1 TTTT
106813547 CTATCATTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
8 1 0.03
9 12 0.33
10 22 0.61
11 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTATATAA
Found at i:106813625 original size:10 final size:9
Alignment explanation
Indices: 106813610--106813677 Score: 50
Period size: 10 Copynumber: 7.2 Consensus size: 9
106813600 CATATTAATA
106813610 AAATTTTAT
1 AAATTTTAT
106813619 AACA-TTTAGT
1 AA-ATTTTA-T
*
106813629 -AATTTTTT
1 AAATTTTAT
106813637 AAAATTTTAT
1 -AAATTTTAT
*
106813647 AATATTTAAT
1 AA-ATTTTAT
*
106813657 AATTTTCTAT
1 AAATTT-TAT
106813667 AAATTTTAT
1 AAATTTTAT
106813676 AA
1 AA
106813678 TAAACTTAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
8 2 0.04
9 20 0.43
10 24 0.52
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (9 bp):
AAATTTTAT
Found at i:106813640 original size:28 final size:28
Alignment explanation
Indices: 106813608--106813677 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
106813598 AGCATATTAA
* *
106813608 TAAAATTTTATAACATTTAGTAATTTTT
1 TAAAATTTTATAACATTTAATAATTTTC
*
106813636 TAAAATTTTATAATATTTAATAATTTTC
1 TAAAATTTTATAACATTTAATAATTTTC
106813664 TATAAATTTTATAA
1 TA-AAATTTTATAA
106813678 TAAACTTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 27 0.71
29 11 0.29
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (28 bp):
TAAAATTTTATAACATTTAATAATTTTC
Found at i:106817165 original size:34 final size:33
Alignment explanation
Indices: 106817117--106817180 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
106817107 AGTGAAATAT
*
106817117 AAGAATTAAAATTAAAATTTAACCATAAAATTA
1 AAGAATTAAAATTAAAATTTAACCAAAAAATTA
* *
106817150 AAGAGATTAGAATTAAAATTTAGCCAAAAAA
1 AAGA-ATTAAAATTAAAATTTAACCAAAAAA
106817181 AACATTGGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.59, C:0.06, G:0.08, T:0.27
Consensus pattern (33 bp):
AAGAATTAAAATTAAAATTTAACCAAAAAATTA
Found at i:106820619 original size:19 final size:19
Alignment explanation
Indices: 106820595--106820656 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
106820585 CTTGGGTGAT
106820595 TTGCAAAAATGGAGATCAA
1 TTGCAAAAATGGAGATCAA
* * *
106820614 TTGCAAATCA-GG-G-TGAT
1 TTGCAAA-AATGGAGATCAA
106820631 TTGCAAAAATGGAGATCAA
1 TTGCAAAAATGGAGATCAA
106820650 TTGCAAA
1 TTGCAAA
106820657 TCAATCTCAG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 1 0.03
17 11 0.33
18 2 0.06
19 18 0.55
20 1 0.03
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.24
Consensus pattern (19 bp):
TTGCAAAAATGGAGATCAA
Found at i:106820635 original size:36 final size:36
Alignment explanation
Indices: 106820588--106820659 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
106820578 TGATTGTCTT
106820588 GGGTGATTTGCAAAAATGGAGATCAATTGCAAATCA
1 GGGTGATTTGCAAAAATGGAGATCAATTGCAAATCA
106820624 GGGTGATTTGCAAAAATGGAGATCAATTGCAAATCA
1 GGGTGATTTGCAAAAATGGAGATCAATTGCAAATCA
106820660 ATCTCAGCTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (36 bp):
GGGTGATTTGCAAAAATGGAGATCAATTGCAAATCA
Found at i:106824431 original size:21 final size:21
Alignment explanation
Indices: 106824405--106824445 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
106824395 ATCTGCTCAA
* *
106824405 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
106824426 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
106824446 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:106826645 original size:6 final size:6
Alignment explanation
Indices: 106826634--106826665 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
106826624 GTAAATAAAT
106826634 AAATAA AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AA
106826666 CTTTACAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:106828064 original size:23 final size:22
Alignment explanation
Indices: 106828013--106828064 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
106828003 CCTCGTCTTT
*
106828013 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
106828035 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
106828058 TTCTTTT
1 TTCTTTT
106828065 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:106830477 original size:6 final size:6
Alignment explanation
Indices: 106830466--106830497 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
106830456 GTAAATAAAT
106830466 AAATAA AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AA
106830498 CTTTACAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:106830527 original size:17 final size:17
Alignment explanation
Indices: 106830497--106830530 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
106830487 TAAAAATAAA
106830497 ACTTTACAACTTTGGCC
1 ACTTTACAACTTTGGCC
106830514 ACTTTGACAA-TTTGGCC
1 ACTTT-ACAACTTTGGCC
106830531 TGATTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (17 bp):
ACTTTACAACTTTGGCC
Found at i:106834346 original size:9 final size:9
Alignment explanation
Indices: 106834311--106834362 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
106834301 CCCATTTTGT
106834311 TTTTGAATTA
1 TTTT-AATTA
106834321 TTTTAATTTAA
1 TTTTAA-TT-A
106834332 TATTTAATTA
1 T-TTTAATTA
106834342 TTTTAATTA
1 TTTTAATTA
* *
106834351 ATTTATTTA
1 TTTTAATTA
106834360 TTT
1 TTT
106834363 ATTAAAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
9 19 0.53
10 8 0.22
11 4 0.11
12 5 0.14
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTAATTA
Found at i:106836771 original size:31 final size:32
Alignment explanation
Indices: 106836729--106836798 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 32
106836719 TCAATATATT
*
106836729 ATATTAT-GTAATTTATAATCCATAAAAT-TAA
1 ATATTATAGTAATATATAAT-CATAAAATGTAA
*
106836760 AT-TTATAGTAATATATAATTATAAAATGTAA
1 ATATTATAGTAATATATAATCATAAAATGTAA
106836791 ATATTATA
1 ATATTATA
106836799 AAAAATAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 11 0.32
31 18 0.53
32 5 0.15
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (32 bp):
ATATTATAGTAATATATAATCATAAAATGTAA
Found at i:106844785 original size:26 final size:26
Alignment explanation
Indices: 106844756--106844857 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
106844746 TGGTACAAAT
106844756 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
106844782 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106844808 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106844834 TGATAATGGTTTAGGTAAATGTTC
1 TGATAATGGGTTAGGTAAATGTTC
106844858 TAAGATGGGA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106849703 original size:18 final size:19
Alignment explanation
Indices: 106849667--106849708 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
106849657 ATCTTAAAAG
106849667 ATAAAAAAAATTAATAACT
1 ATAAAAAAAATTAATAACT
106849686 ATAAAATAAAATT-A-AACT
1 ATAAAA-AAAATTAATAACT
106849704 ATAAA
1 ATAAA
106849709 CTTTAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.41
19 7 0.32
20 6 0.27
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAAAAAAAATTAATAACT
Found at i:106849749 original size:56 final size:55
Alignment explanation
Indices: 106849667--106849785 Score: 188
Period size: 56 Copynumber: 2.2 Consensus size: 55
106849657 ATCTTAAAAG
*
106849667 ATAAAAA-AAATTAATAACTATAAAATAAAATTA-AACTATAAACTTTAAAACACA
1 ATAAAAACAAATTAATAACTACAAAATAAAATTACAA-TATAAACTTTAAAACACA
*
106849721 ATAAAAACAAAGTTAATAACTACAAAATAAAATTACAATCTAAACTTTAAAACACA
1 ATAAAAACAAA-TTAATAACTACAAAATAAAATTACAATATAAACTTTAAAACACA
106849777 ATAAAAACA
1 ATAAAAACA
106849786 GTTGTAAAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
54 7 0.12
55 3 0.05
56 48 0.80
57 2 0.03
ACGTcount: A:0.64, C:0.12, G:0.01, T:0.24
Consensus pattern (55 bp):
ATAAAAACAAATTAATAACTACAAAATAAAATTACAATATAAACTTTAAAACACA
Found at i:106851555 original size:21 final size:21
Alignment explanation
Indices: 106851531--106851580 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
106851521 GGGTCACATG
106851531 CCCGTGTGATCAAGGAACACA
1 CCCGTGTGATCAAGGAACACA
*
106851552 CCCGTGTGATCAAGGAACACG
1 CCCGTGTGATCAAGGAACACA
106851573 CCCGTGTG
1 CCCGTGTG
106851581 GTCCTGAGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.30, G:0.28, T:0.16
Consensus pattern (21 bp):
CCCGTGTGATCAAGGAACACA
Found at i:106853425 original size:24 final size:25
Alignment explanation
Indices: 106853398--106853453 Score: 105
Period size: 24 Copynumber: 2.3 Consensus size: 25
106853388 CCATGTCTGA
106853398 TTCATTATTATATGAAGTAA-TTTC
1 TTCATTATTATATGAAGTAATTTTC
106853422 TTCATTATTATATGAAGTAATTTTC
1 TTCATTATTATATGAAGTAATTTTC
106853447 TTCATTA
1 TTCATTA
106853454 AAGGGAAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 20 0.65
25 11 0.35
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (25 bp):
TTCATTATTATATGAAGTAATTTTC
Found at i:106856178 original size:34 final size:34
Alignment explanation
Indices: 106856135--106856202 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
106856125 TGTTCTTTCA
106856135 AATTAACTCACAAGTATTTTAAAGAAGGCGACTT
1 AATTAACTCACAAGTATTTTAAAGAAGGCGACTT
106856169 AATTAACTCACAAGTATTTTAAAGAAGGCGACTT
1 AATTAACTCACAAGTATTTTAAAGAAGGCGACTT
106856203 TCTCTTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (34 bp):
AATTAACTCACAAGTATTTTAAAGAAGGCGACTT
Found at i:106857084 original size:36 final size:36
Alignment explanation
Indices: 106857037--106857108 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
106857027 TTTCTTTAAC
106857037 CACCAAAATTTAAAGTGTATATGATTTGACTTTGAT
1 CACCAAAATTTAAAGTGTATATGATTTGACTTTGAT
106857073 CACCAAAATTTAAAGTGTATATGATTTGACTTTGAT
1 CACCAAAATTTAAAGTGTATATGATTTGACTTTGAT
106857109 GTGCTCTTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (36 bp):
CACCAAAATTTAAAGTGTATATGATTTGACTTTGAT
Found at i:106861819 original size:31 final size:32
Alignment explanation
Indices: 106861783--106861845 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 32
106861773 CCCTTTTTTT
* *
106861783 TAGTTAAATTTGGCCCTCAACCTTTT-AAAAA
1 TAGTTAAATTTGACCATCAACCTTTTGAAAAA
106861814 TAGTTAAATTTGACCATCAACCTTTTGAAAAA
1 TAGTTAAATTTGACCATCAACCTTTTGAAAAA
106861846 GAGTCGAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 24 0.83
32 5 0.17
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (32 bp):
TAGTTAAATTTGACCATCAACCTTTTGAAAAA
Found at i:106861963 original size:16 final size:16
Alignment explanation
Indices: 106861944--106861974 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
106861934 TTTTTGAAAA
106861944 TTTTATTTTTAAATAG
1 TTTTATTTTTAAATAG
106861960 TTTTATTTTTAAATA
1 TTTTATTTTTAAATA
106861975 CTATTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTTATTTTTAAATAG
Found at i:106861981 original size:16 final size:16
Alignment explanation
Indices: 106861946--106861981 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
106861936 TTTGAAAATT
* *
106861946 TTATTTTTAAATAGTT
1 TTATTTTTAAATACTA
106861962 TTATTTTTAAATACTA
1 TTATTTTTAAATACTA
106861978 TTAT
1 TTAT
106861982 ATAAGCATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (16 bp):
TTATTTTTAAATACTA
Found at i:106863086 original size:15 final size:15
Alignment explanation
Indices: 106863066--106863096 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
106863056 CTATCATCTT
106863066 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
106863081 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
106863096 T
1 T
106863097 TACAACGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACTGCTAACAGAC
Found at i:106863130 original size:20 final size:20
Alignment explanation
Indices: 106863105--106863146 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
106863095 CTTACAACGG
*
106863105 TACAACGGTTTTGACTATAT
1 TACAACGGCTTTGACTATAT
*
106863125 TACAACTGCTTTGACTATAT
1 TACAACGGCTTTGACTATAT
106863145 TA
1 TA
106863147 ACTCTAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
TACAACGGCTTTGACTATAT
Found at i:106866547 original size:18 final size:18
Alignment explanation
Indices: 106866514--106866548 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
106866504 ACTAGCAGAT
* *
106866514 GGCATACTGACTTGTTGG
1 GGCATACTAACCTGTTGG
106866532 GGCATACTAACCTGTTG
1 GGCATACTAACCTGTTG
106866549 TGGAGAGCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (18 bp):
GGCATACTAACCTGTTGG
Found at i:106867810 original size:15 final size:15
Alignment explanation
Indices: 106867790--106867820 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
106867780 CTATCATCTT
106867790 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
106867805 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
106867820 T
1 T
106867821 TACAACGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACTGCTAACAGAC
Found at i:106867854 original size:20 final size:20
Alignment explanation
Indices: 106867829--106867870 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
106867819 CTTACAACGG
*
106867829 TACAACAGTTTTGACTATAT
1 TACAACAGCTTTGACTATAT
* *
106867849 TACAACTGCTTTGGCTATAT
1 TACAACAGCTTTGACTATAT
106867869 TA
1 TA
106867871 ACTCTAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
TACAACAGCTTTGACTATAT
Found at i:106868366 original size:62 final size:63
Alignment explanation
Indices: 106868295--106868413 Score: 195
Period size: 63 Copynumber: 1.9 Consensus size: 63
106868285 TTCCCACTCG
*
106868295 TTATCTTATTATTAAG-GTAAATTATAAAAATAGTCACTTTTATTTATCTCATATTATATTTA
1 TTATCTTATTATTAAGAGTAAACTATAAAAATAGTCACTTTTATTTATCTCATATTATATTTA
* * *
106868357 TTATCTTATTATTAAGAGTAAACTATAAAAATAGTTACTTTTGTTTGTCTCATATTA
1 TTATCTTATTATTAAGAGTAAACTATAAAAATAGTCACTTTTATTTATCTCATATTA
106868414 CACTTTAGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
62 16 0.31
63 36 0.69
ACGTcount: A:0.36, C:0.08, G:0.07, T:0.49
Consensus pattern (63 bp):
TTATCTTATTATTAAGAGTAAACTATAAAAATAGTCACTTTTATTTATCTCATATTATATTTA
Found at i:106870662 original size:31 final size:32
Alignment explanation
Indices: 106870609--106870668 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
106870599 TTTTTTTGAG
* *
106870609 TTAAATTTGACCCTCAACCTTTT-AAAAATAA
1 TTAAATTTGACCATCAAACTTTTGAAAAATAA
*
106870640 TTAAATTTGACCATTAAACTTTTGAAAAA
1 TTAAATTTGACCATCAAACTTTTGAAAAA
106870669 GAGTTGGGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.37
Consensus pattern (32 bp):
TTAAATTTGACCATCAAACTTTTGAAAAATAA
Found at i:106870787 original size:16 final size:16
Alignment explanation
Indices: 106870768--106870805 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
106870758 TTTTTGAAAT
106870768 TTTTATTCTTAAATAC
1 TTTTATTCTTAAATAC
*
106870784 TTTTATTTTTAAATAC
1 TTTTATTCTTAAATAC
*
106870800 TATTAT
1 TTTTAT
106870806 ATAAACATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTATTCTTAAATAC
Found at i:106871858 original size:27 final size:25
Alignment explanation
Indices: 106871819--106871868 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 25
106871809 AAAAAACGAC
106871819 GACATATCTAGAAGAGTAGAATGACAA
1 GACATATCTAGAAGAG--GAATGACAA
106871846 GACATA-CTGAGAAGAGGAATGAC
1 GACATATCT-AGAAGAGGAATGAC
106871869 TTGAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 7 0.32
26 2 0.09
27 13 0.59
ACGTcount: A:0.46, C:0.12, G:0.26, T:0.16
Consensus pattern (25 bp):
GACATATCTAGAAGAGGAATGACAA
Found at i:106871911 original size:19 final size:19
Alignment explanation
Indices: 106871887--106871923 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
106871877 AAATAGCCGA
106871887 AGATTAGTCTTTT-ATTTTT
1 AGATTAGT-TTTTCATTTTT
106871906 AGATTAGTTTTTCATTTT
1 AGATTAGTTTTTCATTTT
106871924 CTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (19 bp):
AGATTAGTTTTTCATTTTT
Found at i:106875381 original size:10 final size:11
Alignment explanation
Indices: 106875366--106875394 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
106875356 GTGCTCTGTG
106875366 AAAATAAAAT-
1 AAAATAAAATA
106875376 AAAATAAAATA
1 AAAATAAAATA
106875387 AAAATAAA
1 AAAATAAA
106875395 CACATAGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:106877172 original size:23 final size:23
Alignment explanation
Indices: 106877146--106877190 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
106877136 TGGGTATGTG
*
106877146 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
106877169 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
106877191 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:106878869 original size:125 final size:125
Alignment explanation
Indices: 106878701--106879016 Score: 404
Period size: 125 Copynumber: 2.5 Consensus size: 125
106878691 GCCAAACGGT
* ** * *
106878701 AAATCAAAACCCAGCACGATTGGGCATAATTTATCGAATTTCCAAATATGAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTCTCGAACTTCCAAATATGAAATATTGCCTCATT
* **
106878766 TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCTG-TATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCAGTTA-TTTAGTCGAACAAA
* * * * * *
106878826 AAATTGAAACCTAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTCTCGAACTTCCAAATATGAAATATTGCCTCATT
* *
106878891 TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCAGTTATTTGGTTGAACAAA
66 TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCAGTTATTTAGTCGAACAAA
* * * * *
106878951 AAATCGAAACCCAGCACGGTAGGGTACGATTTCTCGAAC-TCCAAATACT-AAATATTTCCTTAT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTCTCGAACTTCCAAATA-TGAAATATTGCCTCAT
106879014 TTT
65 TTT
106879017 GAGAGGTTTT
Statistics
Matches: 162, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
124 22 0.14
125 138 0.85
126 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATTTCTCGAACTTCCAAATATGAAATATTGCCTCATT
TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCAGTTATTTAGTCGAACAAA
Found at i:106879415 original size:15 final size:14
Alignment explanation
Indices: 106879357--106879428 Score: 58
Period size: 15 Copynumber: 5.0 Consensus size: 14
106879347 ATATTAGTAT
*
106879357 ATAAATAGAAAT--
1 ATAAATAAAAATAG
106879369 ATAAATATAATAATAG
1 ATAAATA-AA-AATAG
* *
106879385 CAGAAATATAAATAG
1 -ATAAATAAAAATAG
106879400 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
106879415 ATAAATAATAATAG
1 ATAAATAAAAATAG
106879429 TATTAGATTA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
12 7 0.15
13 1 0.02
14 15 0.31
15 18 0.38
16 1 0.02
17 6 0.12
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:106879991 original size:5 final size:5
Alignment explanation
Indices: 106879983--106880009 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
106879973 CTAATTTAAT
106879983 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
106880010 ATAATATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:106880858 original size:42 final size:42
Alignment explanation
Indices: 106880811--106880943 Score: 108
Period size: 42 Copynumber: 3.1 Consensus size: 42
106880801 ATCTGCTCCA
**
106880811 CTACTGTTTAGGGATAAGATCTGTATTTTCTAGCCTATTACC
1 CTACTGTTTAGGGATAAGATCTGTATCATCTAGCCTATTACC
* * * ** * * **
106880853 CTACTGCTTAGGAGGTTAAGGCTCACTATCATCGA-TCTGCT-CC
1 CTACTGTTTA-G-GGATAA-GATCTGTATCATCTAGCCTATTACC
*
106880896 ACTACTGTTTAGGGATAAGATCTGTATCCTCTAGCCTATTACC
1 -CTACTGTTTAGGGATAAGATCTGTATCATCTAGCCTATTACC
106880939 CTACT
1 CTACT
106880944 ACTTAGGGGG
Statistics
Matches: 64, Mismatches: 21, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
41 10 0.16
42 22 0.34
43 6 0.09
44 17 0.27
45 9 0.14
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (42 bp):
CTACTGTTTAGGGATAAGATCTGTATCATCTAGCCTATTACC
Found at i:106880870 original size:86 final size:86
Alignment explanation
Indices: 106880649--106881482 Score: 1064
Period size: 86 Copynumber: 9.6 Consensus size: 86
106880639 GATACATAGA
* * * * *
106880649 GATAAGATCTGTAATTTTC-AGCTTGTTACCCTATTGCTTAGGGGGTTAAGGCTTACCGTCTTCG
1 GATAAGATCTGT-ATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCG
* * *
106880713 ATCTGCTCCGCTATTGATTAGG
65 ATCTGCTCCACTACTGTTTAGG
* * * *
106880735 AAGATAAGATCTATAATTTTC-AGCCTGTTACCCTACTGCTTAAGGGGTTAAGGCTCACTGTCCT
1 --GATAAGATCTGT-ATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTT
106880799 CGATCTGCTCCACTACTGTTTAGG
63 CGATCTGCTCCACTACTGTTTAGG
* * * * *
106880823 GATAAGATCTGTATTTTCTAGCCTATTACCCTACTGCTTAGGAGGTTAAGGCTCACTATCATCGA
1 GATAAGATCTGTATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGA
106880888 TCTGCTCCACTACTGTTTAGG
66 TCTGCTCCACTACTGTTTAGG
* * * **
106880909 GATAAGATCTGTATCCTCTAGCCTATTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGA
1 GATAAGATCTGTATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGA
* * *
106880974 TCTGCTCAACTACTATTTATG
66 TCTGCTCCACTACTGTTTAGG
* * *
106880995 GATAAGATCTGTGTTCTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCAA
1 GATAAGATCTGTATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGA
*
106881060 TCTGCTCTACTACTGTTTAAGG
66 TCTGCTCCACTACTGTTT-AGG
* * *
106881082 G-TAAGATCTGTATTCTCCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATTGTCTTCGA
1 GATAAGATCTGTATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGA
*
106881146 TCTGCTTCACTACTGTTTAGG
66 TCTGCTCCACTACTGTTTAGG
* * * * * *
106881167 GGTAAGATCTGTATTCTCCAGCCTATTACCCTACTGCTTAGGGGGTTAAGGTTCATTGCCTTCGA
1 GATAAGATCTGTATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGA
* *
106881232 TCTACTCCACTACTATTTAAGG
66 TCTGCTCCACTACTGTTT-AGG
* * * * *
106881254 ATATAAGATCTGTAATTTTC-AGCCTGTTAGCCTACTGCTTAAGGGGTTAAGGCTCACCGTCTTC
1 -GATAAGATCTGT-ATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTC
*
106881318 GATCTGCTCCACTACTGTTTAAG
64 GATCTGCTCCACTACTGTTTAGG
* * * *
106881341 GATAAGATCTGTGTTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGCCTAACCGTCTTCGA
1 GATAAGATCTGTATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGA
*
106881406 TTTGCTCCACTACTGTTTAGG
66 TCTGCTCCACTACTGTTTAGG
* * *
106881427 GATACGATCTGTATTTTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
1 GATAAGATCTGTA-TTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
106881483 TGAATTCACC
Statistics
Matches: 659, Mismatches: 79, Indels: 17
0.87 0.10 0.02
Matches are distributed among these distances:
85 14 0.02
86 453 0.69
87 46 0.07
88 141 0.21
89 5 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (86 bp):
GATAAGATCTGTATTCTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGA
TCTGCTCCACTACTGTTTAGG
Found at i:106881116 original size:42 final size:42
Alignment explanation
Indices: 106880983--106881210 Score: 121
Period size: 42 Copynumber: 5.3 Consensus size: 42
106880973 ATCTGCTCAA
* * * *
106880983 CTACTATTTATGGATAAGATCTGTGTTCTCCAGCCTGTTACC
1 CTACTGTTTAGGGGTAAGATCTGTATTCTCCAGCCTGTTACC
* * * * **
106881025 CTACTGCTTAGGGGGTTAAG-GCT-CACTGTCTTCAATCTGCTCTA--
1 CTACTGTTTA-GGGG-TAAGATCTGTA-T-TCTCCAGCCTG-T-TACC
*
106881069 CTACTGTTTAAGGGTAAGATCTGTATTCTCCAGCCTGTTACC
1 CTACTGTTTAGGGGTAAGATCTGTATTCTCCAGCCTGTTACC
* * * * * *
106881111 CTACTGCTTAGGGGTTTAAGGCTCAT-T-GTCTTC-GATCTGCTT-CA
1 CTACTGTTTAGGGG--TAA-GATC-TGTATTCTCCAG-CCTG-TTACC
*
106881155 CTACTGTTTAGGGGTAAGATCTGTATTCTCCAGCCTATTACC
1 CTACTGTTTAGGGGTAAGATCTGTATTCTCCAGCCTGTTACC
*
106881197 CTACTGCTTAGGGG
1 CTACTGTTTAGGGG
106881211 GTTAAGGTTC
Statistics
Matches: 134, Mismatches: 32, Indels: 40
0.65 0.16 0.19
Matches are distributed among these distances:
40 3 0.02
41 7 0.05
42 55 0.41
43 13 0.10
44 46 0.34
45 7 0.05
46 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (42 bp):
CTACTGTTTAGGGGTAAGATCTGTATTCTCCAGCCTGTTACC
Found at i:106881654 original size:64 final size:64
Alignment explanation
Indices: 106881553--106881676 Score: 221
Period size: 64 Copynumber: 1.9 Consensus size: 64
106881543 TGTATCTATG
* *
106881553 CTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTAATC
1 CTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGTAATC
*
106881617 CTTATGTCAAATAAATAGGATGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGT
1 CTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGT
106881677 GTTATTATAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (64 bp):
CTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGTAATC
Found at i:106887650 original size:125 final size:125
Alignment explanation
Indices: 106887521--106887745 Score: 333
Period size: 125 Copynumber: 1.8 Consensus size: 125
106887511 ACGGTCAATC
* * ** * * * **
106887521 GAAACCTAGCACGATTGGGCACAATTTATTGAATTTCTAAATATGAAATATTGCCTCATTTTAAT
1 GAAACCCAGCACGATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTTAAT
*
106887586 TTAAGAAAACATGGATGGAATTTCAAAAGGATATTCTATATTTTAGTCGAATGAAAAATT
66 TTAAGAAAACATGGATGAAATTTCAAAAGGATATTCTATATTTTAGTCGAATGAAAAATT
* * *
106887646 GAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACAAAATATTGCCTCGTTTTAAT
1 GAAACCCAGCACGATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTTAAT
106887711 TTAAGAAAACATGGATGAAATTTCAAAAGGATATT
66 TTAAGAAAACATGGATGAAATTTCAAAAGGATATT
106887746 TAGTTATTTG
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
125 87 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (125 bp):
GAAACCCAGCACGATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTTAAT
TTAAGAAAACATGGATGAAATTTCAAAAGGATATTCTATATTTTAGTCGAATGAAAAATT
Found at i:106887767 original size:125 final size:124
Alignment explanation
Indices: 106887566--106887831 Score: 349
Period size: 125 Copynumber: 2.1 Consensus size: 124
106887556 TCTAAATATG
*
106887566 AAATATTGCCTCATTTTAATTTAAGAAAACATGGATGGAATTTCAAAAGGATATTCTATATTTTA
1 AAATATTGCCTCATTTTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCTATATTTTA
* * * *
106887631 GTCGAATGAAAAATTGAAACCCAGCAC-GATTGGGCACGATCTCTCAAACTTCCAAACACA
66 GTCGAACGAAAAATCGAAACCCAACACAG-TAGGGCACGATCTCTCAAAC-TCCAAACACA
*
106887691 AAATATTGCCTCGTTTTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATT-TAGT-TATT
1 AAATATTGCCTCATTTTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCTA-TAT-TT
* * * * * *
106887754 TGGTTGAACGAAAAATCGAAACCCAATACAGTAGGGCACGATTTCTCGAACTCCAAACACT
64 TAGTCGAACGAAAAATCGAAACCCAACACAGTAGGGCACGATCTCTCAAACTCCAAACACA
* *
106887815 AAATATTTCCTTATTTT
1 AAATATTGCCTCATTTT
106887832 GAGAGGTATT
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
124 26 0.21
125 96 0.78
126 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (124 bp):
AAATATTGCCTCATTTTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCTATATTTTA
GTCGAACGAAAAATCGAAACCCAACACAGTAGGGCACGATCTCTCAAACTCCAAACACA
Found at i:106888177 original size:29 final size:29
Alignment explanation
Indices: 106888134--106888236 Score: 79
Period size: 29 Copynumber: 3.6 Consensus size: 29
106888124 ATATATAAGA
* *
106888134 AAATAATAATGAAAATAATATTAGTATAT
1 AAATAAAAATAAAAATAATATTAGTATAT
* *
106888163 AAATAAAAATAAAAATAAAAATA-TA-AT
1 AAATAAAAATAAAAATAATATTAGTATAT
* * *
106888190 AAATATAAAT-ATAATAAT-TGTAGAAATAT
1 AAATAAAAATAAAAATAATAT-TAG-TATAT
106888219 AAATAGATAAATAAAAAT
1 AAATA-A-AAATAAAAAT
106888237 TAGATAAATA
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
26 8 0.14
27 11 0.20
28 3 0.05
29 26 0.46
31 4 0.07
32 4 0.07
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (29 bp):
AAATAAAAATAAAAATAATATTAGTATAT
Found at i:106888199 original size:15 final size:14
Alignment explanation
Indices: 106888161--106888206 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
106888151 ATATTAGTAT
106888161 ATAAATAAAA-ATA
1 ATAAATAAAATATA
106888174 A-AAATAAAAATATA
1 ATAAAT-AAAATATA
106888188 ATAAATATAAATATA
1 ATAAATA-AAATATA
106888203 ATAA
1 ATAA
106888207 TTGTAGAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.14
13 5 0.17
14 5 0.17
15 15 0.52
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAATAAAATATA
Found at i:106888242 original size:15 final size:14
Alignment explanation
Indices: 106888161--106888253 Score: 56
Period size: 15 Copynumber: 7.0 Consensus size: 14
106888151 ATATTAGTAT
106888161 ATAAATAAAAATA-
1 ATAAATAAAAATAG
106888174 A-AAATAAAAAT--
1 ATAAATAAAAATAG
*
106888185 AT-AATAAATATA-
1 ATAAATAAAAATAG
* * *
106888197 A-ATATAATAATTG
1 ATAAATAAAAATAG
* *
106888210 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
106888225 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
106888240 ATAAATAATAATAG
1 ATAAATAAAAATAG
106888254 TATTAGATTA
Statistics
Matches: 61, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
11 9 0.15
12 17 0.28
13 1 0.02
14 13 0.21
15 21 0.34
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:106900042 original size:13 final size:13
Alignment explanation
Indices: 106900024--106900053 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
106900014 TTGAATAATT
106900024 AAAATAATTATTC
1 AAAATAATTATTC
*
106900037 AAAATAATTATTT
1 AAAATAATTATTC
106900050 AAAA
1 AAAA
106900054 GTATTTACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (13 bp):
AAAATAATTATTC
Found at i:106904304 original size:19 final size:19
Alignment explanation
Indices: 106904280--106904336 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
106904270 ATTTAGTCTT
106904280 AATTTTTAAAAAATTATAA
1 AATTTTTAAAAAATTATAA
106904299 AATTTTT-AAAAATT-TAA
1 AATTTTTAAAAAATTATAA
**
106904316 AA-AGTTAAAAAATATATAA
1 AATTTTTAAAAAAT-TATAA
106904335 AA
1 AA
106904337 ACTTTAGCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 2 0.06
17 11 0.33
18 8 0.24
19 12 0.36
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
AATTTTTAAAAAATTATAA
Found at i:106904327 original size:27 final size:28
Alignment explanation
Indices: 106904284--106904342 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
106904274 AGTCTTAATT
* * *
106904284 TTTAAAAAATTATAAAATTTTTAAAAA-
1 TTTAAAAAATTAAAAAATATATAAAAAC
*
106904311 TTTAAAAAGTTAAAAAATATATAAAAAC
1 TTTAAAAAATTAAAAAATATATAAAAAC
106904339 TTTA
1 TTTA
106904343 GCTTAAATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (28 bp):
TTTAAAAAATTAAAAAATATATAAAAAC
Found at i:106905463 original size:18 final size:18
Alignment explanation
Indices: 106905436--106905528 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
106905426 TACGACCGTT
*
106905436 TACGGTACTATTCATGTA
1 TACGGTACTATTCACGTA
* *
106905454 TACGGCACTATTTACGTA
1 TACGGTACTATTCACGTA
106905472 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
106905490 TACGGCACTATTCATGTA
1 TACGGTACTATTCACGTA
*
106905508 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
106905526 TAC
1 TAC
106905529 AGTAGTTGGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:106905483 original size:36 final size:36
Alignment explanation
Indices: 106905436--106905528 Score: 150
Period size: 36 Copynumber: 2.6 Consensus size: 36
106905426 TACGACCGTT
* *
106905436 TACGGTACTATTCATGTATACGGCACTATTTACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
106905472 TACGGTACTATTCACGTATACGGCACTATTCATGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
106905508 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
106905529 AGTAGTTGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGGCACTATTCACGTA
Found at i:106913949 original size:21 final size:23
Alignment explanation
Indices: 106913919--106913963 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
106913909 ATCCTTCCAA
106913919 ATTAAAATAT-TTAAT-TATTTT
1 ATTAAAATATGTTAATATATTTT
* *
106913940 ATTAAGATATGTTTATATATTTT
1 ATTAAAATATGTTAATATATTTT
106913963 A
1 A
106913964 AGGAAAAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 4 0.20
23 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
ATTAAAATATGTTAATATATTTT
Found at i:106914000 original size:23 final size:22
Alignment explanation
Indices: 106913919--106914007 Score: 74
Period size: 23 Copynumber: 4.0 Consensus size: 22
106913909 ATCCTTCCAA
*
106913919 ATTAAAATAT-TTAATTATTTT
1 ATTAAAATATATTTATTATTTT
* *
106913940 ATTAAGATATGTTTATATATTTT
1 ATTAAAATATATTTAT-TATTTT
** * *
106913963 AAGGAAAAGAGATTTGATTATTTT
1 -ATTAAAATATATTT-ATTATTTT
106913987 ATTAAAATATATTTA-TATTTT
1 ATTAAAATATATTTATTATTTT
106914008 CAGAAGGTAT
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
21 15 0.29
22 5 0.10
23 16 0.31
24 14 0.27
25 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (22 bp):
ATTAAAATATATTTATTATTTT
Found at i:106920710 original size:51 final size:51
Alignment explanation
Indices: 106920634--106920735 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
106920624 ACCTCTAAAA
*
106920634 AGGTTGTATGATCACAGGATTCCACTTCATGATGAGAGTAAGGTAGTGAAT
1 AGGTTGCATGATCACAGGATTCCACTTCATGATGAGAGTAAGGTAGTGAAT
*
106920685 AGGTTGCATGATTACAGGATTCCACTTCATGATGAGAGTAAGGTAGTGAAT
1 AGGTTGCATGATCACAGGATTCCACTTCATGATGAGAGTAAGGTAGTGAAT
106920736 GTAAGGCCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (51 bp):
AGGTTGCATGATCACAGGATTCCACTTCATGATGAGAGTAAGGTAGTGAAT
Found at i:106923015 original size:10 final size:11
Alignment explanation
Indices: 106922960--106923016 Score: 57
Period size: 10 Copynumber: 5.2 Consensus size: 11
106922950 AAATATTCAA
106922960 ATATTTTAATT
1 ATATTTTAATT
106922971 GATATTTT-A-T
1 -ATATTTTAATT
106922981 ATATTTTGTAATT
1 ATA-TTT-TAATT
106922994 ATATTTTAATT
1 ATATTTTAATT
*
106923005 A-ATTTTTATT
1 ATATTTTAATT
106923015 AT
1 AT
106923017 TTAAATTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
9 3 0.08
10 13 0.33
11 8 0.21
12 11 0.28
13 4 0.10
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (11 bp):
ATATTTTAATT
Found at i:106923298 original size:22 final size:22
Alignment explanation
Indices: 106923273--106923315 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
106923263 AAAATTTGAT
*
106923273 TAAATGTGTAATTATTATGGTA
1 TAAATGTGTAAGTATTATGGTA
106923295 TAAATGTGTAAGTATTATGGT
1 TAAATGTGTAAGTATTATGGT
106923316 TGTAATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (22 bp):
TAAATGTGTAAGTATTATGGTA
Found at i:106925931 original size:39 final size:40
Alignment explanation
Indices: 106925877--106925966 Score: 155
Period size: 40 Copynumber: 2.3 Consensus size: 40
106925867 TTGGGTCGGA
* *
106925877 TATAACAACCAGCACGAATGCCTTC-GGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
106925916 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
106925956 TATAATAACCC
1 TATAATAACCC
106925967 ATTAGCATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 23 0.48
40 25 0.52
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:106939363 original size:32 final size:32
Alignment explanation
Indices: 106939326--106939390 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
106939316 AATGCTTACC
106939326 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
106939358 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
106939390 A
1 A
106939391 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:106940852 original size:34 final size:34
Alignment explanation
Indices: 106940808--106940998 Score: 152
Period size: 34 Copynumber: 5.6 Consensus size: 34
106940798 TGCAATATGG
* *
106940808 TATGCCTATAACAGATCAATACAGTAGTAATTAA
1 TATGCTTATAACAGATCAATACAGTAGCAATTAA
* * * * *
106940842 TATGCTTATAATAGTTCGATATAGTAGCAAATAA
1 TATGCTTATAACAGATCAATACAGTAGCAATTAA
* * *
106940876 TATGCTTCTAGCAGATCAATAC-G-ATGACATTTAA
1 TATGCTTATAACAGATCAATACAGTA-G-CAATTAA
* * * *
106940910 TATGCTTATAATAGATTAATACAATAGCAAATAA
1 TATGCTTATAACAGATCAATACAGTAGCAATTAA
** ** * *
106940944 TATATTTATAATGGATCAATGCGGTAGCAATTAA
1 TATGCTTATAACAGATCAATACAGTAGCAATTAA
* *
106940978 TATGTTTATAACAAATCAATA
1 TATGCTTATAACAGATCAATA
106940999 TACAGTAACA
Statistics
Matches: 118, Mismatches: 35, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
32 1 0.01
33 2 0.02
34 113 0.96
35 1 0.01
36 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.34
Consensus pattern (34 bp):
TATGCTTATAACAGATCAATACAGTAGCAATTAA
Found at i:106940978 original size:68 final size:68
Alignment explanation
Indices: 106940814--106940988 Score: 183
Period size: 68 Copynumber: 2.6 Consensus size: 68
106940804 ATGGTATGCC
* * * * *
106940814 TATAACAGATCAATACAGTAGTAATTAATATGCTTATAATAGTTCGATATAGTAGCAAATAATAT
1 TATAACAGATCAATACGGTAGCAATTAATATGCTTATAATAGTTCAATACAATAGCAAATAATAT
*
106940879 GCT
66 ACT
* * * *
106940882 TCTAGCAGATCAATACGAT-GACATTTAATATGCTTATAATAGATT-AATACAATAGCAAATAAT
1 TATAACAGATCAATACGGTAG-CAATTAATATGCTTATAATAG-TTCAATACAATAGCAAATAAT
*
106940945 ATATT
64 ATACT
** * *
106940950 TATAATGGATCAATGCGGTAGCAATTAATATGTTTATAA
1 TATAACAGATCAATACGGTAGCAATTAATATGCTTATAA
106940989 CAAATCAATA
Statistics
Matches: 85, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
67 1 0.01
68 81 0.95
69 3 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.34
Consensus pattern (68 bp):
TATAACAGATCAATACGGTAGCAATTAATATGCTTATAATAGTTCAATACAATAGCAAATAATAT
ACT
Found at i:106946496 original size:3 final size:3
Alignment explanation
Indices: 106946488--106946516 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
106946478 GCCCTTTTCT
106946488 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
106946517 TATAAATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:106949138 original size:18 final size:18
Alignment explanation
Indices: 106949117--106949154 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
106949107 CCAAAAGGAT
106949117 CTGTGAGTGTCGAAGCAC
1 CTGTGAGTGTCGAAGCAC
*
106949135 CTGTGAGTGTTGAAGCAC
1 CTGTGAGTGTCGAAGCAC
106949153 CT
1 CT
106949155 ACAGTTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (18 bp):
CTGTGAGTGTCGAAGCAC
Found at i:106949342 original size:201 final size:200
Alignment explanation
Indices: 106948996--106949513 Score: 757
Period size: 201 Copynumber: 2.6 Consensus size: 200
106948986 GAGTGTTGAG
* *
106948996 GCACCTACGGTTAATGAAGTTGATGATGGTGGCTCAAGCGTTACCAGTGGTAAGTTGAGGAGAAG
1 GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGCGTTA-CAGTGGTAAGTTGAGGAGAAG
* * * * *
106949061 GACGTGCTATGAGTGTGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAAAGGATCTGTGAGTG
65 GACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAAAGGATATGCGAGTG
* * * * * *
106949126 TCGAAGCACCTGTGAGTGTTGAAGCACCTACAGTTAATGAAGTTGGTAACAGTGGTTCGATGGTT
130 TCAAAGCAACTGTGAGTGTCGAAGCACCTACAGTTAATGAAGTTGGCAACAGTGGTTCAACGGTT
106949191 AATGAA
195 AATGAA
* *
106949197 GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGTGTTACTAGTGGTAAGTTAAGGAGAAG
1 GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGCGTTAC-AGTGGTAAGTTGAGGAGAAG
*
106949262 GACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGTCCAAAAGGATATGCGAGTG
65 GACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAAAGGATATGCGAGTG
*
106949327 TCAAAGCAACTGTGAGTGTCGAAGCACCTACAGTTAATGAAGTTGGCAACGGTGGTTCAACGGTT
130 TCAAAGCAACTGTGAGTGTCGAAGCACCTACAGTTAATGAAGTTGGCAACAGTGGTTCAACGGTT
106949392 AATGAA
195 AATGAA
* * * ** * * * *
106949398 GCACCTACGGTTAACGAAGTTGCTAACGATGGCTTGACCGTTAGCAGCGGGAAATTGAGGAGAAG
1 GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGCGTTA-CAGTGGTAAGTTGAGGAGAAG
* *
106949463 GACATGCTACGAGTGCGGACAAAAGGGTCATATCTCTTCTGCTTGCCCAAA
65 GACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAA
106949514 TAAGAAATCT
Statistics
Matches: 284, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
200 1 0.00
201 282 0.99
202 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (200 bp):
GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGCGTTACAGTGGTAAGTTGAGGAGAAGG
ACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAAAGGATATGCGAGTGT
CAAAGCAACTGTGAGTGTCGAAGCACCTACAGTTAATGAAGTTGGCAACAGTGGTTCAACGGTTA
ATGAA
Found at i:106953561 original size:46 final size:44
Alignment explanation
Indices: 106953459--106953566 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
106953449 TGTCTTTGAC
** * * *
106953459 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
* *
106953503 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGTCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
106953549 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
106953567 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:106960927 original size:46 final size:44
Alignment explanation
Indices: 106960823--106960930 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
106960813 TGTCTTTGAC
** * * *
106960823 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
106960867 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
106960913 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
106960931 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:106965501 original size:15 final size:15
Alignment explanation
Indices: 106965481--106965510 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106965471 TTCCGAAGAA
*
106965481 GGAAAGAGGCTAAAC
1 GGAAAGAAGCTAAAC
106965496 GGAAAGAAGCTAAAC
1 GGAAAGAAGCTAAAC
106965511 ATTTCAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.30, T:0.07
Consensus pattern (15 bp):
GGAAAGAAGCTAAAC
Found at i:106966274 original size:3 final size:3
Alignment explanation
Indices: 106966266--106966293 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
106966256 GCTTAATTGT
106966266 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
106966294 AGAAATAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:106966631 original size:38 final size:38
Alignment explanation
Indices: 106966515--106966678 Score: 112
Period size: 36 Copynumber: 4.4 Consensus size: 38
106966505 ATTAATTTAG
* *
106966515 AATTATTAATTAAAAAGTTGAAATAAAATAGAAGTGAT
1 AATTGTTAATTAAAAAGTTGAAATAAAATTGAAGTGAT
* * * * *
106966553 AATT-ATACATTTAAAAA--T-AAATAGAATTTAAATTAT
1 AATTGTTA-A-TTAAAAAGTTGAAATAAAATTGAAGTGAT
* *
106966589 AATTGTTAATTAAAAAGTTGTAATATAATTGAAGTGAT
1 AATTGTTAATTAAAAAGTTGAAATAAAATTGAAGTGAT
* *
106966627 AATTG-TACATTTAAAAA--T-AAATAAAATT-ATAATTAT
1 AATTGTTA-A-TTAAAAAGTTGAAATAAAATTGA-AGTGAT
*
106966663 AATTATTAATTAAAAA
1 AATTGTTAATTAAAAA
106966679 ATACATGTTG
Statistics
Matches: 99, Mismatches: 17, Indels: 23
0.71 0.12 0.17
Matches are distributed among these distances:
35 15 0.15
36 35 0.35
37 11 0.11
38 24 0.24
39 14 0.14
ACGTcount: A:0.54, C:0.01, G:0.08, T:0.37
Consensus pattern (38 bp):
AATTGTTAATTAAAAAGTTGAAATAAAATTGAAGTGAT
Found at i:106966923 original size:9 final size:9
Alignment explanation
Indices: 106966909--106966949 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
106966899 TAATATTAGA
106966909 GTTAATTAT
1 GTTAATTAT
106966918 GTTAATTA-
1 GTTAATTAT
106966926 GTT-ATTAT
1 GTTAATTAT
* *
106966934 TTTAATAAT
1 GTTAATTAT
106966943 GTTAATT
1 GTTAATT
106966950 TTTATATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
7 4 0.15
8 5 0.19
9 17 0.65
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (9 bp):
GTTAATTAT
Found at i:106966932 original size:16 final size:17
Alignment explanation
Indices: 106966908--106966949 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
106966898 TTAATATTAG
106966908 AGTTAATTATGTTAATT
1 AGTTAATTATGTTAATT
* *
106966925 AGTT-ATTATTTTAATA
1 AGTTAATTATGTTAATT
106966941 ATGTTAATT
1 A-GTTAATT
106966950 TTTATATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 11 0.52
17 7 0.33
18 3 0.14
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.55
Consensus pattern (17 bp):
AGTTAATTATGTTAATT
Found at i:106968829 original size:17 final size:19
Alignment explanation
Indices: 106968787--106968830 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
106968777 ACGAAATTTT
*
106968787 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
106968806 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
106968824 AA-TATTA
1 AATTATTA
106968831 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:106971423 original size:21 final size:21
Alignment explanation
Indices: 106971381--106971423 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
106971371 ATTCCCCACA
* *
106971381 GGAAGTGTAGGGATGGACGGG
1 GGAAGTGCAGGGATAGACGGG
* *
106971402 GGAAGTGCAGGGTTAGATGGG
1 GGAAGTGCAGGGATAGACGGG
106971423 G
1 G
106971424 TCATCATGCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.05, G:0.56, T:0.16
Consensus pattern (21 bp):
GGAAGTGCAGGGATAGACGGG
Found at i:106977439 original size:10 final size:10
Alignment explanation
Indices: 106977419--106977469 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
106977409 AATTAAATTC
106977419 TAAAGATAAA
1 TAAAGATAAA
106977429 TACAA-ATAAA
1 TA-AAGATAAA
106977439 TAAAGAT-AA
1 TAAAGATAAA
106977448 TAAAAGATAAA
1 T-AAAGATAAA
106977459 TGAAA-ATAAA
1 T-AAAGATAAA
106977469 T
1 T
106977470 CCTAAAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
9 5 0.14
10 23 0.64
11 8 0.22
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
TAAAGATAAA
Found at i:106977444 original size:20 final size:21
Alignment explanation
Indices: 106977419--106977469 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
106977409 AATTAAATTC
*
106977419 TAAAGATAAATACAA-ATAAA
1 TAAAGATAAATAAAAGATAAA
106977439 TAAAGAT-AATAAAAGATAAA
1 TAAAGATAAATAAAAGATAAA
106977459 TGAAA-ATAAAT
1 T-AAAGATAAAT
106977470 CCTAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 6 0.22
20 15 0.56
21 6 0.22
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.22
Consensus pattern (21 bp):
TAAAGATAAATAAAAGATAAA
Found at i:106979411 original size:12 final size:11
Alignment explanation
Indices: 106979403--106979499 Score: 58
Period size: 12 Copynumber: 8.5 Consensus size: 11
106979393 AAAATAAAGT
106979403 AATAAATAATAA
1 AATAAATAAT-A
106979415 AATAAAATAATA
1 AAT-AAATAATA
*
106979427 AAT-ACTAATAA
1 AATAAATAAT-A
*
106979438 AATAAAATAAAA
1 AAT-AAATAATA
*
106979450 TAATAAATACT-
1 -AATAAATAATA
106979461 AAT-AA-AATAA
1 AATAAATAAT-A
*
106979471 AATAAAATAAAA
1 AAT-AAATAATA
106979483 TAATAAATAATA
1 -AATAAATAATA
106979495 AATAA
1 AATAA
106979500 TAAAAATTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 23
0.68 0.08 0.24
Matches are distributed among these distances:
8 2 0.03
9 2 0.03
10 11 0.17
11 9 0.14
12 23 0.35
13 19 0.29
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (11 bp):
AATAAATAATA
Found at i:106979420 original size:5 final size:5
Alignment explanation
Indices: 106979410--106979485 Score: 80
Period size: 5 Copynumber: 14.0 Consensus size: 5
106979400 AGTAATAAAT
* *
106979410 AATAA AATAA AATAATA AATACT AATAA AATAA AATAA AATAATA AATACT
1 AATAA AATAA AAT-A-A AATA-A AATAA AATAA AATAA AAT-A-A AATA-A
106979461 AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA
106979486 TAAATAATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
5 41 0.67
6 12 0.20
7 8 0.13
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:106979441 original size:28 final size:28
Alignment explanation
Indices: 106979410--106979480 Score: 142
Period size: 28 Copynumber: 2.5 Consensus size: 28
106979400 AGTAATAAAT
106979410 AATAAAATAAAATAATAAATACTAATAA
1 AATAAAATAAAATAATAAATACTAATAA
106979438 AATAAAATAAAATAATAAATACTAATAA
1 AATAAAATAAAATAATAAATACTAATAA
106979466 AATAAAATAAAATAA
1 AATAAAATAAAATAA
106979481 AATAATAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (28 bp):
AATAAAATAAAATAATAAATACTAATAA
Done.