Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 332 of 344
Found at i:107947647 original size:52 final size:52
Alignment explanation
Indices: 107947568--107947934 Score: 461
Period size: 52 Copynumber: 7.2 Consensus size: 52
107947558 TAAGTGTAGC
* * * **
107947568 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
107947621 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
107947673 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* ** *
107947719 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
107947771 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
107947817 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * ** *
107947869 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
107947921 CACTTTGTCACTTG
1 CACTTT-TCACTTG
107947935 ATCAGAAGTA
Statistics
Matches: 278, Mismatches: 23, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
46 84 0.30
49 1 0.00
52 178 0.64
53 15 0.05
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:107947734 original size:98 final size:98
Alignment explanation
Indices: 107947568--107947926 Score: 520
Period size: 98 Copynumber: 3.6 Consensus size: 98
107947558 TAAGTGTAGC
* * * *
107947568 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
*
107947633 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
107947666 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
** *
107947731 GTCACTTGATCAGATAAGTATAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
107947764 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
107947829 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * * *
107947862 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTT
107947927 GTCACTTGAT
Statistics
Matches: 236, Mismatches: 19, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
98 192 0.81
100 1 0.00
104 43 0.18
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:107947844 original size:150 final size:144
Alignment explanation
Indices: 107947579--107947940 Score: 571
Period size: 150 Copynumber: 2.4 Consensus size: 144
107947569 ACTTATCACT
* *
107947579 TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGTCACTTGATC
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC---T---TTGTCACTTGATC
*
107947644 AGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
60 AGATAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
107947709 TATTACTTATCACTTTCCAC
125 TATTACTTATCACTTTCCAC
*
107947729 TTGTCACTTGATCAGATAAGTATAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAA
*
107947794 GTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGC
66 GTATAGCCGAAGCTATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGC
107947859 TATTACTTATCACTTTCCAC
125 TATTACTTATCACTTTCCAC
107947879 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
107947941 AGTACTCAAA
Statistics
Matches: 200, Mismatches: 6, Indels: 12
0.92 0.03 0.06
Matches are distributed among these distances:
144 43 0.22
146 1 0.00
147 1 0.00
150 155 0.77
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (144 bp):
TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAA
GTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTAC
TTATCACTTTCCAC
Found at i:107952277 original size:130 final size:130
Alignment explanation
Indices: 107952114--107952585 Score: 407
Period size: 130 Copynumber: 3.6 Consensus size: 130
107952104 CGCGAAATAG
* * * * * * * * * * *
107952114 TGCCCTAACGTGTTGGGTTGCAATTCCGCGTTTGCTAAAAATAATTGAATATCCCTTTAAAATTT
1 TGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAATATCCCTTTGAAATTT
* * * * *
107952179 CACTCATATCTTCTAAAAATCTTTAAAACTAAGGCAATACTCGGTATTTGATAATTTGAGAATCA
66 CACTCATATTTTCTAAAAATCTTTAAAACTAAGGCGATATTCGATGTTTGATAATTTGAGAATCA
* * * *
107952244 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTT-ATATTC
1 TGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAATATCCCTTTGAAATT-
* * * * * * * * *
107952308 GCACTCATGTTTAT-TAAAAACACTTTAAAACGAAGACGATGTTCAATGTTTGGTGATTTGAGAA
65 TCACTCATATTT-TCTAAAAA-TCTTTAAAACTAAGGCGATATTCGATGTTTGATAATTTGAGAA
*
107952372 TCG
128 TCA
* * * * * ** * *
107952375 TGCCCTATCGTGCTGCGTTGCGCTTTTTCATTGGTTCGAAACAATTAAAGATCCCTTTGGAATTT
1 TGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAATATCCCTTTGAAATTT
* *
107952440 CATTCACATTTTCT-AAAATCTTTCAAAA-TGAAGGCGATATTCGATGTTTGGA-AATTTGAGAA
66 CACTCATATTTTCTAAAAATCTTT-AAAACT-AAGGCGATATTCGATGTTT-GATAATTTGAGAA
107952502 TCGA
128 TC-A
* * * ** *
107952506 -GCCCTATTGTGCTGGGTTGCGCTTTTTCATTTGTTCAAATTAATCGAATATCCCTTTGGAATTT
1 TGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAATATCCCTTTGAAATTT
*
107952570 CACTCGTATTTTCTAA
66 CACTCATATTTTCTAA
107952586 GGTTAGGCAA
Statistics
Matches: 268, Mismatches: 64, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
129 8 0.03
130 164 0.61
131 93 0.35
132 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (130 bp):
TGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAATATCCCTTTGAAATTT
CACTCATATTTTCTAAAAATCTTTAAAACTAAGGCGATATTCGATGTTTGATAATTTGAGAATCA
Found at i:107954529 original size:3 final size:3
Alignment explanation
Indices: 107954521--107954685 Score: 74
Period size: 3 Copynumber: 55.0 Consensus size: 3
107954511 TCAGTTAATA
* * * * * * *
107954521 TAT TAT TAT CAC TAT CAT TAT TAT T-T TAC TAT TAT AACT TAA CA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
*
107954565 TAT TAT TAT TACT T-T TAT TAT TAT TAT TAT TAT TAC TACT T-T TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * * * *
107954610 CT-T TAT T-T TCTT TAC TAT TAT TTT TAT TAT CAT TATT TATT TAT TAC
1 -TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT TAT
* * *
107954657 TAT TGT TAT TAT TAT TGT CA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
107954686 ATATGTTTTA
Statistics
Matches: 119, Mismatches: 30, Indels: 26
0.68 0.17 0.15
Matches are distributed among these distances:
2 11 0.09
3 93 0.78
4 15 0.13
ACGTcount: A:0.29, C:0.09, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:107954545 original size:44 final size:44
Alignment explanation
Indices: 107954497--107954589 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
107954487 ATTACTATTG
* * *
107954497 TTATTCTACTATTATCAGTTAATATATTATTATCACTATCATTA
1 TTATTCTACTATTATAACTTAACATATTATTATCACTATCATTA
* * * *
107954541 TTATTTTACTATTATAACTTAACATATTATTATTACTTTTATTA
1 TTATTCTACTATTATAACTTAACATATTATTATCACTATCATTA
107954585 TTATT
1 TTATT
107954590 ATTATTATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.11, G:0.01, T:0.55
Consensus pattern (44 bp):
TTATTCTACTATTATAACTTAACATATTATTATCACTATCATTA
Found at i:107961640 original size:39 final size:39
Alignment explanation
Indices: 107961581--107961718 Score: 222
Period size: 39 Copynumber: 3.5 Consensus size: 39
107961571 TCTGATTAGT
* *
107961581 TTCAATTAGCCTTCGGGCTTCCGTTTAACACTTATGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
*
107961620 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTTC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
*
107961659 TTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTATGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
* *
107961698 TTCAGCTAGACTTCGGGCTTC
1 TTCAGTTAGCCTTCGGGCTTC
107961719 AGATCACGAT
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.14, C:0.27, G:0.21, T:0.38
Consensus pattern (39 bp):
TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
Found at i:107969331 original size:21 final size:21
Alignment explanation
Indices: 107969306--107969487 Score: 99
Period size: 20 Copynumber: 9.2 Consensus size: 21
107969296 TAGCCTTCGG
*
107969306 GCTTCCTTTTAGCACTTGTGT
1 GCTTCCATTTAGCACTTGTGT
*
107969327 GCTT-CAGTTAGC-CTTCG-G-
1 GCTTCCATTTAGCACTT-GTGT
107969345 GCTTCCATTTAGCACTTGTGT
1 GCTTCCATTTAGCACTTGTGT
*
107969366 GCTT-CAGTTAGC-CTTCG-G-
1 GCTTCCATTTAGCACTT-GTGT
*
107969384 GCTTCCATTTAGCACTTATGT
1 GCTTCCATTTAGCACTTGTGT
** *
107969405 G-TTTTAGTTAGC-CTTCG-G-
1 GCTTCCATTTAGCACTT-GTGT
* *
107969423 GCTTCCGTTTAGCACTTATGT
1 GCTTCCATTTAGCACTTGTGT
*
107969444 GCTT-CAGTTAGC-CTT-TAG-
1 GCTTCCATTTAGCACTTGT-GT
** *
107969462 GCTTCTGTTTAGCACTTATGT
1 GCTTCCATTTAGCACTTGTGT
107969483 GCTTC
1 GCTTC
107969488 AGCTAGACTT
Statistics
Matches: 121, Mismatches: 20, Indels: 40
0.67 0.11 0.22
Matches are distributed among these distances:
18 14 0.12
19 43 0.36
20 45 0.37
21 19 0.16
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.42
Consensus pattern (21 bp):
GCTTCCATTTAGCACTTGTGT
Found at i:107969334 original size:39 final size:39
Alignment explanation
Indices: 107969288--107969505 Score: 328
Period size: 39 Copynumber: 5.6 Consensus size: 39
107969278 GCTCTAATGA
* *
107969288 GCTTCAGTTAGCCTTCGGGCTTCCTTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
*
107969327 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
107969366 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
* * *
107969405 GTTTTAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
** **
107969444 GCTTCAGTTAGCCTTTAGGCTTCTGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
* *
107969483 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
107969506 AGATCACGAT
Statistics
Matches: 165, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 165 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
Found at i:107972846 original size:9 final size:10
Alignment explanation
Indices: 107972816--107972849 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
107972806 CTCCAGCCTA
107972816 AAACCAAACT
1 AAACCAAACT
107972826 AAACCAAACT
1 AAACCAAACT
107972836 AAACC-AACT
1 AAACCAAACT
107972845 AAACC
1 AAACC
107972850 CCAAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.59, C:0.32, G:0.00, T:0.09
Consensus pattern (10 bp):
AAACCAAACT
Found at i:107977084 original size:3 final size:3
Alignment explanation
Indices: 107977076--107977215 Score: 101
Period size: 3 Copynumber: 46.0 Consensus size: 3
107977066 TAACTTAACA
107977076 TAT TAT TAT TACT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
107977121 TAT TAC TACT T-T TAT CT-T TAT T-T TCTT TAC TAT TAT TTT TAT TAT
1 TAT TAT TA-T TAT TAT -TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
107977166 CAT TATT TATT TATT TAT TAC TAT TGT TAT TAT TAT TGT CA- TAT TAT
1 TAT TA-T TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
107977213 TAT
1 TAT
107977216 ATATGTTTTA
Statistics
Matches: 110, Mismatches: 17, Indels: 20
0.75 0.12 0.14
Matches are distributed among these distances:
2 8 0.07
3 85 0.77
4 17 0.15
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:107978301 original size:13 final size:13
Alignment explanation
Indices: 107978283--107978346 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
107978273 AGTTTGGCAA
*
107978283 TGCTTTTCAAAAG
1 TGCTTTTGAAAAG
107978296 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* * *
107978309 TGGTGTGGAAAAG
1 TGCTTTTGAAAAG
*
107978322 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
107978335 TGCTTTTGAAAA
1 TGCTTTTGAAAA
107978347 ATTTGGTTTA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:107979242 original size:86 final size:85
Alignment explanation
Indices: 107979102--107979270 Score: 293
Period size: 86 Copynumber: 2.0 Consensus size: 85
107979092 TATAAAGTAA
* *
107979102 GGTGAATGAAAGTTTGTGAGCAATCAAATGTAAAAAAGTCTTGGTAAAAAAATTTTAGAAAATCA
1 GGTGAATGAAAGTTTGTGAGCAATCAAATATAAAAAAGTCTTAGTAAAAAAATTTTAGAAAATCA
107979167 ATTAATTCTTTAATAAAAAAT
66 ATTAATT-TTTAATAAAAAAT
* *
107979188 GGTGAATGATAGTTTGTGAGCAATCAAATATAAAAAAGTCTTAGTAAAATAATTTTAGAAAATCA
1 GGTGAATGAAAGTTTGTGAGCAATCAAATATAAAAAAGTCTTAGTAAAAAAATTTTAGAAAATCA
107979253 ATTAATTTTTAATAAAAA
66 ATTAATTTTTAATAAAAA
107979271 TTGCATTCAA
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
85 11 0.14
86 68 0.86
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.33
Consensus pattern (85 bp):
GGTGAATGAAAGTTTGTGAGCAATCAAATATAAAAAAGTCTTAGTAAAAAAATTTTAGAAAATCA
ATTAATTTTTAATAAAAAAT
Found at i:107987441 original size:3 final size:3
Alignment explanation
Indices: 107987433--107987489 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
107987423 ATTTTTGATA
* * * *
107987433 TAT TAT TAT TAT TAT TA- TATT TAC TAC TAT TAA TAT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
*
107987478 CAT TAT TAT TAT
1 TAT TAT TAT TAT
107987490 CATCGTATAT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
2 2 0.05
3 40 0.91
4 2 0.05
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:107987607 original size:49 final size:46
Alignment explanation
Indices: 107987533--107987628 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 46
107987523 ATACACTCTT
* *
107987533 TATATATAGTATTATTTTTAATATTATTATATATTTATTTTTTAACA
1 TATATATAGTATTATTTTTAATATTATTA-ACAATTATTTTTTAACA
*
107987580 TATATAT-GTATATATTTATGTAATATTATTAACAATTGTTTTTTAACA
1 TATATATAGTAT-TATTT-T-TAATATTATTAACAATTATTTTTTAACA
107987628 T
1 T
107987629 TATTATTTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
46 4 0.09
47 12 0.28
48 16 0.37
49 11 0.26
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.56
Consensus pattern (46 bp):
TATATATAGTATTATTTTTAATATTATTAACAATTATTTTTTAACA
Found at i:107987675 original size:14 final size:14
Alignment explanation
Indices: 107987656--107987685 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
107987646 ATATATCATG
*
107987656 TTTTTAATACTATA
1 TTTTTAATACCATA
107987670 TTTTTAATACCATA
1 TTTTTAATACCATA
107987684 TT
1 TT
107987686 ATGTATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTTAATACCATA
Found at i:107987775 original size:23 final size:22
Alignment explanation
Indices: 107987743--107987791 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
107987733 TCATATGTAT
107987743 ATATTTTATGTACATACTTTTA
1 ATATTTTATGTACATACTTTTA
** *
107987765 ATATTATTATGTATTTATTTTTA
1 ATATT-TTATGTACATACTTTTA
107987788 ATAT
1 ATAT
107987792 ATGTATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (22 bp):
ATATTTTATGTACATACTTTTA
Found at i:107987802 original size:23 final size:23
Alignment explanation
Indices: 107987760--107987805 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
107987750 ATGTACATAC
*
107987760 TTTTAATATTATTATGTATTTAT
1 TTTTAATATTATTATATATTTAT
107987783 TTTTAATA-TATGTATATATTTAT
1 TTTTAATATTAT-TATATATTTAT
107987806 GTAGTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTAATATTATTATATATTTAT
Found at i:107987929 original size:16 final size:16
Alignment explanation
Indices: 107987908--107987941 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
107987898 TGTTATGTAC
107987908 ATATTTTTTAAATATT
1 ATATTTTTTAAATATT
*
107987924 ATATTTTTTATATATT
1 ATATTTTTTAAATATT
107987940 AT
1 AT
107987942 GATGTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATATTTTTTAAATATT
Found at i:107988015 original size:88 final size:89
Alignment explanation
Indices: 107987843--107988022 Score: 201
Period size: 86 Copynumber: 2.1 Consensus size: 89
107987833 TTCTAATATG
* * * *
107987843 TATATATATTATGTAAATATTTTAATACTATATTATGTATATATATATTTATATATGTTATGTAC
1 TATATATATGATGTAAATATTTTAATACTACATTATGTATATATATATTTATATATCTTATGTAA
*
107987908 ATATTTTTTAAATATTATATTTTT
66 ATATTTTCTAAATATTATATTTTT
* *
107987932 TATATATTATGATGTATATATTTTAATA-T-CATTA-GT-TATATATTTTTTATACTATCTTATG
1 TATATA-TATGATGTAAATATTTTAATACTACATTATGTATATATA-TATTTATA-TATCTTATG
* * *
107987993 TAAATA-TTTCT-AATACTATATATTG
63 TAAATATTTTCTAAATATTATATTTTT
107988018 TATAT
1 TATAT
107988023 TTCTAATACC
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
86 22 0.28
87 13 0.17
88 17 0.22
89 7 0.09
90 19 0.24
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (89 bp):
TATATATATGATGTAAATATTTTAATACTACATTATGTATATATATATTTATATATCTTATGTAA
ATATTTTCTAAATATTATATTTTT
Found at i:107988180 original size:25 final size:25
Alignment explanation
Indices: 107988117--107988271 Score: 129
Period size: 25 Copynumber: 6.1 Consensus size: 25
107988107 TATATATATA
* **
107988117 TATATCATGTATATATGATTTTTTTA-
1 TATATTATGTATATAT--TTTTAATAC
*
107988143 TATATTATGTATATATCTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* **
107988168 TATATTATTTATAT-TTTTTCTTAC
1 TATATTATGTATATATTTTTAATAC
* *
107988192 -ATATTATCTTATGTATATTTTAATAAC
1 TATATTAT-GTATATAT-TTTTAAT-AC
*
107988219 TATATTATGTATGTATTTTTAACT-C
1 TATATTATGTATATATTTTTAA-TAC
*
107988244 TATATTATGTACATATTTTTAATAC
1 TATATTATGTATATATTTTTAATAC
107988269 TAT
1 TAT
107988272 GTATATACTT
Statistics
Matches: 107, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
23 7 0.07
24 18 0.17
25 39 0.36
26 26 0.24
27 10 0.09
28 7 0.07
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAC
Found at i:107989631 original size:20 final size:20
Alignment explanation
Indices: 107989606--107989643 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
107989596 TGGAAAAGTT
107989606 ATATTATCAATTAGAACCAG
1 ATATTATCAATTAGAACCAG
107989626 ATATTATCAATTAGAACC
1 ATATTATCAATTAGAACC
107989644 GGATCAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (20 bp):
ATATTATCAATTAGAACCAG
Found at i:107990038 original size:28 final size:32
Alignment explanation
Indices: 107990006--107990073 Score: 74
Period size: 31 Copynumber: 2.3 Consensus size: 32
107989996 GAACTAACAA
*
107990006 AGGTACCAACTTGGAA-AA-AAA-ATA-GTTT
1 AGGTACCAACTTGGAATAAGAAATAAATGTTT
* *
107990034 AGGTATC-ACTTGTAATAAGAAATAAATGTTT
1 AGGTACCAACTTGGAATAAGAAATAAATGTTT
107990065 AGGTACCAA
1 AGGTACCAA
107990074 AATGAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
27 7 0.23
28 8 0.26
29 3 0.10
30 2 0.06
31 10 0.32
32 1 0.03
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (32 bp):
AGGTACCAACTTGGAATAAGAAATAAATGTTT
Found at i:107993376 original size:17 final size:18
Alignment explanation
Indices: 107993354--107993389 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
107993344 GAGACTTTAA
107993354 TGAAAGAGGTGA-AATGT
1 TGAAAGAGGTGACAATGT
*
107993371 TGAAAGTGGTGACAATGT
1 TGAAAGAGGTGACAATGT
107993389 T
1 T
107993390 TCCCCCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.36, C:0.03, G:0.33, T:0.28
Consensus pattern (18 bp):
TGAAAGAGGTGACAATGT
Found at i:108000076 original size:26 final size:27
Alignment explanation
Indices: 108000026--108000082 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 27
108000016 TAAAAATATT
108000026 TTTATATTTAGTTTTTAAAATTTTA-A
1 TTTATATTTAGTTTTTAAAATTTTATA
*
108000052 TTTATATTT-GCTTTATTATAA-TTTATA
1 TTTATATTTAG-TTT-TTAAAATTTTATA
108000079 TTTA
1 TTTA
108000083 CTTTTTCTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 1 0.04
26 16 0.59
27 10 0.37
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (27 bp):
TTTATATTTAGTTTTTAAAATTTTATA
Found at i:108007442 original size:23 final size:22
Alignment explanation
Indices: 108007423--108007485 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
108007413 TAAAAAATGC
108007423 TAATACAATTACATATAAAATTT
1 TAATACAATTACATATAAAA-TT
*
108007446 TAATA-AATATAAAT-TAAAAATT
1 TAATACAAT-TACATAT-AAAATT
108007468 TAAATACAATTACATATA
1 T-AATACAATTACATATA
108007486 TAGGATATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
22 7 0.21
23 22 0.67
24 4 0.12
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
TAATACAATTACATATAAAATT
Found at i:108007976 original size:21 final size:22
Alignment explanation
Indices: 108007950--108008011 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
108007940 TCTAAACTCT
108007950 AAACCCTTAACCCTT-AACCCC
1 AAACCCTTAACCCTTAAACCCC
*
108007971 AAACCCTT-ACACCTTAAACTCC
1 AAACCCTTAAC-CCTTAAACCCC
*
108007993 -AACCC-TAACCCCTAAACCC
1 AAACCCTTAACCCTTAAACCC
108008012 TAAATTATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
20 11 0.31
21 19 0.54
22 5 0.14
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (22 bp):
AAACCCTTAACCCTTAAACCCC
Found at i:108008112 original size:46 final size:46
Alignment explanation
Indices: 108008059--108008152 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
108008049 CTTCAAATAC
** *
108008059 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTGAACCA
1 TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA
* *
108008105 TAGTTAACTCAAAAATCTTAAACCCTAAACTATATATCTTAAACCA
1 TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA
108008151 TA
1 TA
108008153 AACCATAAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.43, C:0.24, G:0.03, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:108008143 original size:21 final size:21
Alignment explanation
Indices: 108008075--108008155 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
108008065 ACTCCTAAAC
* *
108008075 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACTATATAT
* * *
108008096 CTTGAACCATAGTTAACTCAAAAAT
1 CTTAAACCATA---AACT-ATATAT
*
108008121 CTTAAACCCTAAACTATATAT
1 CTTAAACCATAAACTATATAT
108008142 CTTAAACCATAAAC
1 CTTAAACCATAAAC
108008156 CATAAACTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
21 26 0.57
22 4 0.09
24 3 0.07
25 13 0.28
ACGTcount: A:0.44, C:0.25, G:0.02, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACTATATAT
Found at i:108008431 original size:40 final size:40
Alignment explanation
Indices: 108008324--108008450 Score: 150
Period size: 40 Copynumber: 3.1 Consensus size: 40
108008314 GTTATATGAC
*
108008324 TTTTAGCGGCG-TTTTGCCAAAAGCGCCGCTAATT-CTCTGT
1 TTTTAGCGGCGTTTTTGCTAAAA-CGCCGCT-ATTGCTCTGT
* *
108008364 TTTTCGCGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCG-TTTTTGCTAAAACGCCGCTATTGCTCTGT
* * *
108008405 TTTTAGTGGCGTTTTTGGTAAAACGCCGCTATTGCTATGT
1 TTTTAGCGGCGTTTTTGCTAAAACGCCGCTATTGCTCTGT
108008445 GTTTTA
1 -TTTTA
108008451 CAATTTGTGC
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 39 0.52
41 27 0.36
42 9 0.12
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTTGCTAAAACGCCGCTATTGCTCTGT
Found at i:108012811 original size:92 final size:92
Alignment explanation
Indices: 108012679--108012876 Score: 297
Period size: 92 Copynumber: 2.2 Consensus size: 92
108012669 ACTCTTTGTA
* * *
108012679 TAAGGGTTGGGAGATGTATGCCTAAAGCAATGCTTAAATAAGAGTTGCCTTTTATGTAGTCCTAA
1 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTTATGTAGTCCTAA
* *
108012744 GACGACACTTTTGTGGTGACATTTTCC
66 GACGACACTTTTGTGGCGACACTTTCC
* * * * *
108012771 TAAGGGTTGGTATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAA
1 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTTATGTAGTCCTAA
108012836 GACGACACTTTTGTGGCGACACTTTCC
66 GACGACACTTTTGTGGCGACACTTTCC
*
108012863 TAAGTGTTGGTATA
1 TAAGGGTTGGTATA
108012877 AACTATGCTT
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 95 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.34
Consensus pattern (92 bp):
TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTTATGTAGTCCTAA
GACGACACTTTTGTGGCGACACTTTCC
Found at i:108012927 original size:92 final size:91
Alignment explanation
Indices: 108012695--108012927 Score: 220
Period size: 92 Copynumber: 2.5 Consensus size: 91
108012685 TTGGGAGATG
* * * * *
108012695 TATGCCTAAAGCAATGCTTAAATAAGAGTTGCCTTTTATGTA-GTCCTAAGACGACACTTTTGTG
1 TATGCCTAAGGCAACGCTTGAATAAGAGTTGGC--ATATGTATGTCCTAAGACGACACTTTTGTG
* * **
108012759 GTGACATTTTCCTAAGGGTTGGTATATG
64 GCGACACTTTCCTAAGGGTTGGTATAAC
* * *
108012787 TATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAAGACGACACTTTTGTGG
1 TATGCCTAAGGCAACGCTTGAATAAGAGTTGGCATATGT-ATGTCCTAAGACGACACTTTTGTGG
*
108012852 CGACACTTTCCTAAGTGTTGGTATAAAC
65 CGACACTTTCCTAAGGGTTGGTAT-AAC
** * * * *
108012880 TATG-CTTTGGTCAACTCTTTGTATAAGGGTTGGGATATGTATG-CCTAA
1 TATGCCTAAGG-CAACGC-TTGAATAAGAGTTGGCATATGTATGTCCTAA
108012928 AGCAACGCTT
Statistics
Matches: 116, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
90 5 0.04
92 82 0.71
93 12 0.10
94 17 0.15
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (91 bp):
TATGCCTAAGGCAACGCTTGAATAAGAGTTGGCATATGTATGTCCTAAGACGACACTTTTGTGGC
GACACTTTCCTAAGGGTTGGTATAAC
Found at i:108012955 original size:132 final size:132
Alignment explanation
Indices: 108012771--108013140 Score: 598
Period size: 132 Copynumber: 2.8 Consensus size: 132
108012761 GACATTTTCC
* * * *
108012771 TAAGGGTTGGTATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* * *
108012836 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGTATAAACTATGCTTTGGTCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
108012901 TA
131 TA
*
108012903 TAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAATTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* *
108012968 GACGACACTTTTGTGGCGACACTTTTCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
108013033 TA
131 TA
* *
108013035 TAAGGGTTGGGATATGTATGCCT-AAGACAACGCTTGAATAAGAGTTAGCTTTTATCTAGTCCTA
1 TAAGGGTTGGGATATGTATGCCTAAAG-CAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTA
* *
108013099 AGACGACAGTTTTGGGGCGACACTTTCCTAAGTGTTGGGATA
65 AGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATA
108013141 CACTTGTCAG
Statistics
Matches: 221, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
131 3 0.01
132 218 0.99
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (132 bp):
TAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
TA
Found at i:108013476 original size:37 final size:37
Alignment explanation
Indices: 108013435--108013512 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
108013425 AGGTTATATA
* * *
108013435 GTTTAAGGTTTTAGGGTTTTGTATTTAT-GAGTTTGGG
1 GTTTAAGATTTTAGGGTTTTATAATTATGGA-TTTGGG
*
108013472 GTTTATGATTTTAGGGTTTTATAATTATGGATTTGGG
1 GTTTAAGATTTTAGGGTTTTATAATTATGGATTTGGG
108013509 GTTT
1 GTTT
108013513 TGTGATTATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.53
Consensus pattern (37 bp):
GTTTAAGATTTTAGGGTTTTATAATTATGGATTTGGG
Found at i:108013499 original size:22 final size:21
Alignment explanation
Indices: 108013474--108013522 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
108013464 AGTTTGGGGT
108013474 TTATGATTTTAGGGTTTTATAA
1 TTATGA-TTTAGGGTTTTATAA
* * *
108013496 TTATGGATTTGGGGTTTTGTGA
1 TTAT-GATTTAGGGTTTTATAA
108013518 TTATG
1 TTATG
108013523 GGTTTGTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 20 0.87
23 2 0.09
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (21 bp):
TTATGATTTAGGGTTTTATAA
Found at i:108013523 original size:22 final size:22
Alignment explanation
Indices: 108013485--108013528 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
108013475 TATGATTTTA
108013485 GGGTTTTATAATTATGGATTTG
1 GGGTTTTATAATTATGGATTTG
* * *
108013507 GGGTTTTGTGATTATGGGTTTG
1 GGGTTTTATAATTATGGATTTG
108013529 TGATTAATCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.50
Consensus pattern (22 bp):
GGGTTTTATAATTATGGATTTG
Found at i:108013526 original size:37 final size:37
Alignment explanation
Indices: 108013446--108013527 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
108013436 TTTAAGGTTT
* * *
108013446 TAGGGTTTTGTATTTATGAGTTTGGGGTTTATGATTT
1 TAGGGTTTTATAATTATGAGTTTGGGGTTTATGATTA
*
108013483 TAGGGTTTTATAATTATG-GATTTGGGGTTTTGTGATTA
1 TAGGGTTTTATAATTATGAG-TTTGGGG-TTTATGATTA
108013521 T-GGGTTT
1 TAGGGTTT
108013528 GTGATTAATC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
36 1 0.03
37 29 0.74
38 9 0.23
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.52
Consensus pattern (37 bp):
TAGGGTTTTATAATTATGAGTTTGGGGTTTATGATTA
Found at i:108014209 original size:47 final size:47
Alignment explanation
Indices: 108014141--108014407 Score: 453
Period size: 47 Copynumber: 5.7 Consensus size: 47
108014131 TTAAGAATGT
*
108014141 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATT
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
*
108014188 ATGCATACTTTACCCGGATAAAATATGTATTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
*
108014235 ATGCATACTTTACTCGGATAAAGTATGTATTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
* * *
108014282 ATGCATACTTTACTCGAATAAAGTATGTCTTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
*
108014329 ATGCATATTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
* *
108014376 ATGCATACTTTACCCGGGTAAAGTATGCATTA
1 ATGCATACTTTACCCGGATAAAGTATGTATTA
108014408 TTTATTTGAT
Statistics
Matches: 207, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 207 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (47 bp):
ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
Found at i:108017204 original size:7 final size:6
Alignment explanation
Indices: 108017169--108017212 Score: 52
Period size: 6 Copynumber: 6.8 Consensus size: 6
108017159 TTCAATCTTT
*
108017169 ATTTTA ATTTTA ATTTTA ATTTTGT ATTTTAA ATTTTAA ATTTT
1 ATTTTA ATTTTA ATTTTA ATTTT-A ATTTT-A ATTTT-A ATTTT
108017213 TTTAGTTGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
6 17 0.50
7 17 0.50
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (6 bp):
ATTTTA
Found at i:108017410 original size:36 final size:35
Alignment explanation
Indices: 108017359--108017550 Score: 206
Period size: 36 Copynumber: 5.3 Consensus size: 35
108017349 TTAAATAATA
* * *
108017359 TCTATTCCAACTTTTTTAAGGTTGCTTTAAACAGG
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAGG
* *
108017394 TCTATCCCAACATTTTTTAAAAGTTACCTTAGACATGG
1 TCTATCCCAAC-TTTTTT-AAGGTTGCCTTAGACA-GG
*
108017432 TCTATCCCAACCTTTTTAAGGTTGCCTTAGAC-GAG
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAG-G
* *
108017467 TCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACATGG
1 TCTA-TCCCAACTTTTTT-AAGGTTGCCTTAGACA-GG
* * * *
108017505 TTTATCCTAACCTGTTTAAGGTTGCCTTAGACAGG
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAGG
108017540 TCTATCCCAAC
1 TCTATCCCAAC
108017551 ACCACAGGAA
Statistics
Matches: 131, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
34 1 0.01
35 26 0.20
36 45 0.34
37 41 0.31
38 17 0.13
39 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (35 bp):
TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAGG
Found at i:108017442 original size:73 final size:73
Alignment explanation
Indices: 108017359--108017551 Score: 262
Period size: 73 Copynumber: 2.6 Consensus size: 73
108017349 TTAAATAATA
* * * *
108017359 TCTATTCCAACTTTTTTAAGGTTGCTTTAAACAGGTCTATCCCAACATTTTTTAAAAGTTACCTT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACATTTTTTAAAAGTTACCTT
108017424 AGACATGG
66 AGACATGG
* * * * *
108017432 TCTATCCCAACCTTTTTAAGGTTGCCTTAGAC-GAGTCTATTCCGACCTTTTTTAAAGGTTGCCT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAG-GTCTATCCCAACATTTTTTAAAAGTTACCT
108017496 TAGACATGG
65 TAGACATGG
* * *
108017505 TTTATCCTAACCTGTTTAAGGTTGCCTTAGACAGGTCTATCCCAACA
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACA
108017552 CCACAGGAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
72 1 0.01
73 101 0.98
74 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.37
Consensus pattern (73 bp):
TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACATTTTTTAAAAGTTACCTT
AGACATGG
Found at i:108017586 original size:12 final size:12
Alignment explanation
Indices: 108017569--108017594 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
108017559 AAAATAGGGC
108017569 TTTAGCGGCGTT
1 TTTAGCGGCGTT
108017581 TTTAGCGGCGTT
1 TTTAGCGGCGTT
108017593 TT
1 TT
108017595 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:108017698 original size:40 final size:40
Alignment explanation
Indices: 108017618--108017745 Score: 193
Period size: 41 Copynumber: 3.1 Consensus size: 40
108017608 GCAAAAATTA
* * *
108017618 TAAAACACAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGC
1 TAAAAC-CAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGC
108017660 TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
108017700 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCAC
1 TAAA-ACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
108017741 TAAAA
1 TAAAA
108017746 GTCATGTAAC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
40 21 0.26
41 54 0.67
42 6 0.07
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (40 bp):
TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:108017821 original size:54 final size:54
Alignment explanation
Indices: 108017762--108017866 Score: 122
Period size: 54 Copynumber: 1.9 Consensus size: 54
108017752 TAACTCCTAA
*
108017762 AAACCT-AAACCCCAAAAAAAACATAAAACACTAATCTATAACCCCTAAAATAGT
1 AAACCTCAAACCCCAAAAAAAACAT-AAACACTAAACTATAACCCCTAAAATAGT
* * * * ** *
108017816 AAACCTCTAAGCCCTAACAAGCCCTAAACACTAAACTATAACCCCTAAAAT
1 AAACCTCAAACCCCAAAAAAAACATAAACACTAAACTATAACCCCTAAAAT
108017867 CCTAAACGTC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
54 31 0.74
55 11 0.26
ACGTcount: A:0.50, C:0.30, G:0.03, T:0.17
Consensus pattern (54 bp):
AAACCTCAAACCCCAAAAAAAACATAAACACTAAACTATAACCCCTAAAATAGT
Found at i:108018574 original size:14 final size:14
Alignment explanation
Indices: 108018535--108018617 Score: 69
Period size: 14 Copynumber: 5.8 Consensus size: 14
108018525 AACTAACCTC
108018535 TAAACCCATAAACTA
1 TAAACCC-TAAACTA
* * * *
108018550 TAGATCGTAAATTA
1 TAAACCCTAAACTA
108018564 TAAACCCTAAACTA
1 TAAACCCTAAACTA
*
108018578 TAAACCATAAA-TCA
1 TAAACCCTAAACT-A
* *
108018592 TAAACTCTTAAACTG
1 TAAAC-CCTAAACTA
108018607 TAAACCCTAAA
1 TAAACCCTAAA
108018618 ATCTAAAAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
13 1 0.02
14 37 0.70
15 14 0.26
16 1 0.02
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.25
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:108018611 original size:29 final size:28
Alignment explanation
Indices: 108018535--108018617 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
108018525 AACTAACCTC
* * * *
108018535 TAAACCCATAAACTATAGATCGTAAATTA
1 TAAACCC-TAAACTATAAACCATAAATCA
108018564 TAAACCCTAAACTATAAACCATAAATCA
1 TAAACCCTAAACTATAAACCATAAATCA
* * *
108018592 TAAACTCTTAAACTGTAAACCCTAAA
1 TAAAC-CCTAAACTATAAACCATAAA
108018618 ATCTAAAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
28 22 0.48
29 24 0.52
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.25
Consensus pattern (28 bp):
TAAACCCTAAACTATAAACCATAAATCA
Found at i:108019106 original size:9 final size:8
Alignment explanation
Indices: 108019090--108019177 Score: 65
Period size: 8 Copynumber: 10.9 Consensus size: 8
108019080 TTTATATGTT
108019090 AATTTAAA
1 AATTTAAA
108019098 AATTATAAA
1 AATT-TAAA
108019107 AATATTCAAAA
1 AAT-TT--AAA
*
108019118 AAATTAAA
1 AATTTAAA
108019126 AA-TTAAA
1 AATTTAAA
*
108019133 AA-TAAAA
1 AATTTAAA
* *
108019140 AAATAAAA
1 AATTTAAA
108019148 AATTTAAA
1 AATTTAAA
*
108019156 AA-TAAAA
1 AATTTAAA
*
108019163 AACTTAAA
1 AATTTAAA
108019171 AATTTAA
1 AATTTAA
108019178 TATTTAATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
7 19 0.28
8 32 0.48
9 8 0.12
10 3 0.04
11 5 0.07
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AATTTAAA
Found at i:108019128 original size:7 final size:7
Alignment explanation
Indices: 108019116--108019174 Score: 64
Period size: 7 Copynumber: 8.0 Consensus size: 7
108019106 AAATATTCAA
108019116 AAAAATT
1 AAAAATT
108019123 AAAAATT
1 AAAAATT
*
108019130 AAAAATAA
1 AAAAAT-T
*
108019138 AAAAATA
1 AAAAATT
108019145 AAAAATTT
1 AAAAA-TT
*
108019153 AAAAATA
1 AAAAATT
108019160 AAAAACTT
1 AAAAA-TT
108019168 AAAAATT
1 AAAAATT
108019175 TAATATTTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
7 27 0.60
8 18 0.40
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:108019141 original size:15 final size:15
Alignment explanation
Indices: 108019114--108019173 Score: 70
Period size: 15 Copynumber: 4.0 Consensus size: 15
108019104 AAAAATATTC
108019114 AAAAAAATTAAAAATT
1 AAAAAAATTAAAAA-T
108019130 AAAAATAA--AAAAAT
1 AAAAA-AATTAAAAAT
*
108019144 AAAAAATTTAAAAAT
1 AAAAAAATTAAAAAT
*
108019159 AAAAAACTTAAAAAT
1 AAAAAAATTAAAAAT
108019174 TTAATATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
13 1 0.03
14 6 0.15
15 25 0.64
16 5 0.13
17 2 0.05
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAAAAATTAAAAAT
Found at i:108019175 original size:23 final size:23
Alignment explanation
Indices: 108019114--108019177 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
108019104 AAAAATATTC
108019114 AAAAAAATTAAAAA-TTAAAAAT
1 AAAAAAATTAAAAATTTAAAAAT
*
108019136 AAAAAAATAAAAAATTTAAAAAT
1 AAAAAAATTAAAAATTTAAAAAT
*
108019159 AAAAAACTTAAAAATTTAA
1 AAAAAAATTAAAAATTTAA
108019178 TATTTAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
22 13 0.34
23 25 0.66
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (23 bp):
AAAAAAATTAAAAATTTAAAAAT
Found at i:108021009 original size:16 final size:15
Alignment explanation
Indices: 108020970--108021012 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
108020960 CTCTTGTGCC
* *
108020970 AAAAA-AAAAAAAAG
1 AAAAAGAAAGAAAGG
108020984 AAAAAGAAAGAAAGG
1 AAAAAGAAAGAAAGG
108020999 AAAACAGAAAGAAA
1 AAAA-AGAAAGAAA
108021013 ATCTCATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.20
15 11 0.44
16 9 0.36
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAAGG
Found at i:108023646 original size:19 final size:18
Alignment explanation
Indices: 108023620--108023658 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
108023610 CATTGATATA
108023620 TTTATATTTAATCTAGTT
1 TTTATATTTAATCTAGTT
* *
108023638 TTTATTATTTATTTTAGTT
1 TTTA-TATTTAATCTAGTT
108023657 TT
1 TT
108023659 GATTCTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (18 bp):
TTTATATTTAATCTAGTT
Found at i:108023677 original size:19 final size:21
Alignment explanation
Indices: 108023649--108023696 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
108023639 TTATTATTTA
108023649 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
108023669 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
108023689 TTTTAGTT
1 TTTTAGTT
108023697 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:108024210 original size:38 final size:36
Alignment explanation
Indices: 108024146--108024233 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 36
108024136 AACTATATCG
*
108024146 ACCTTTTT-AAGGTTGTCTTAGATAGGTTTATCACA
1 ACCTTTTTAAAGGTTGTCTTAGATAGGTCTATCACA
*
108024181 ACCTTTTTCAAAGGTTGGTCTTA-ACTAGGTCTATCCCA
1 ACCTTTTT-AAAGGTT-GTCTTAGA-TAGGTCTATCACA
108024219 ACCCTTTTTAAAGGT
1 A-CCTTTTTAAAGGT
108024234 CGGCATTGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
35 8 0.17
37 7 0.15
38 24 0.52
39 7 0.15
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (36 bp):
ACCTTTTTAAAGGTTGTCTTAGATAGGTCTATCACA
Found at i:108024709 original size:40 final size:40
Alignment explanation
Indices: 108024664--108024742 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
108024654 CAAATCTGAT
108024664 TATCCATCAGCTATCAATAATGACTTTGGAAATAGAAAAA
1 TATCCATCAGCTATCAATAATGACTTTGGAAATAGAAAAA
108024704 TATCCATCAGCTATCAATAATGACTTTGGAAATAGAAAA
1 TATCCATCAGCTATCAATAATGACTTTGGAAATAGAAAA
108024743 TTATATTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (40 bp):
TATCCATCAGCTATCAATAATGACTTTGGAAATAGAAAAA
Found at i:108025831 original size:146 final size:144
Alignment explanation
Indices: 108025414--108025848 Score: 750
Period size: 142 Copynumber: 3.0 Consensus size: 144
108025404 TTACGTTCTC
*
108025414 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAATCAT-GTATGGTGGAAT
1 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAATCATAGTATGGTAGAAT
* *
108025478 GACTTAGTTGTGAAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACTCCTTTAACTAA
66 GACTCAGTTGTGAAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTAA
108025543 AGCAGGCCTATGGA
131 AGCAGGCCTATGGA
* *
108025557 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAG-AAAAAAAATCCTAGTATGGTAGAGT
1 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAATCATAGTATGGTAGAAT
*
108025621 GACTCAGTTGAG-AAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTAA
66 GACTCAGTTGTGAAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTAA
108025685 AGCAGGCCTATGGA
131 AGCAGGCCTATGGA
*
108025699 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAAATCATAGTATGGTTGAA
1 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAG-AAAAAAAAATCATAGTATGGTAGAA
*
108025764 TAACTCAGTTGTGAAAAAAAAAATTATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACT
65 TGACTCAGTTGTGAAAAAAAAAA-TATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACT
*
108025829 AAAGCAGGCCTCTGGA
129 AAAGCAGGCCTATGGA
108025845 AATC
1 AATC
108025849 ATAGCCACAT
Statistics
Matches: 275, Mismatches: 12, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
142 115 0.42
143 59 0.21
144 32 0.12
145 9 0.03
146 60 0.22
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (144 bp):
AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAATCATAGTATGGTAGAAT
GACTCAGTTGTGAAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTAA
AGCAGGCCTATGGA
Found at i:108027888 original size:14 final size:15
Alignment explanation
Indices: 108027863--108027894 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
108027853 AATTCTTCTA
108027863 TTCTTATAATTTTTT
1 TTCTTATAATTTTTT
108027878 TTCTT-TAATTTTTT
1 TTCTTATAATTTTTT
108027892 TTC
1 TTC
108027895 CTTTCTTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (15 bp):
TTCTTATAATTTTTT
Found at i:108040446 original size:11 final size:11
Alignment explanation
Indices: 108040430--108040455 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
108040420 AATATCACCG
108040430 TTAGTTAAAGC
1 TTAGTTAAAGC
108040441 TTAGTTAAAGC
1 TTAGTTAAAGC
108040452 TTAG
1 TTAG
108040456 CGGTGATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (11 bp):
TTAGTTAAAGC
Found at i:108041601 original size:10 final size:10
Alignment explanation
Indices: 108041588--108041660 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 10
108041578 TTAAAAATTT
108041588 TAATTTTTTA
1 TAATTTTTTA
108041598 TAATTTATATT-
1 TAATTT-T-TTA
108041609 T-ATTTTTTA
1 TAATTTTTTA
108041618 -AA-TTTTTA
1 TAATTTTTTA
*
108041626 -AGACTTTTT-
1 TA-ATTTTTTA
108041635 TAATATTTTTA
1 TAAT-TTTTTA
*
108041646 TAATTTTATA
1 TAATTTTTTA
108041656 TAATT
1 TAATT
108041661 AGGATTAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 18
0.72 0.03 0.25
Matches are distributed among these distances:
8 9 0.17
9 4 0.08
10 31 0.60
11 6 0.12
12 2 0.04
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:108041652 original size:19 final size:19
Alignment explanation
Indices: 108041588--108041652 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
108041578 TTAAAAATTT
*
108041588 TAATTTTTT-ATAATTTATA
1 TAATTTTTTAAT-ATTTTTA
*
108041607 TTTATTTTTTAA-ATTTTTA
1 -TAATTTTTTAATATTTTTA
108041626 -AGACTTTTTTAATATTTTTA
1 TA-A-TTTTTTAATATTTTTA
108041646 TAATTTT
1 TAATTTT
108041653 ATATAATTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
18 1 0.03
19 18 0.49
20 16 0.43
21 2 0.05
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TAATTTTTTAATATTTTTA
Found at i:108042271 original size:21 final size:21
Alignment explanation
Indices: 108042246--108042314 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
108042236 TATAATGATT
108042246 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
108042267 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
108042287 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
108042307 ATTATTAT
1 ATTATTAT
108042315 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:108042327 original size:15 final size:14
Alignment explanation
Indices: 108042301--108042331 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
108042291 TATGGTTTTA
108042301 TATTAGATTATTAT
1 TATTAGATTATTAT
108042315 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
108042330 TA
1 TA
108042332 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:108047297 original size:18 final size:19
Alignment explanation
Indices: 108047271--108047306 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
108047261 AATATCCCAC
*
108047271 CATCGTTGG-GGAACTTGT
1 CATCCTTGGAGGAACTTGT
108047289 CATCCTTGGAGGAACTTG
1 CATCCTTGGAGGAACTTG
108047307 GTTTGGAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (19 bp):
CATCCTTGGAGGAACTTGT
Found at i:108050998 original size:3 final size:3
Alignment explanation
Indices: 108050990--108051211 Score: 133
Period size: 3 Copynumber: 76.0 Consensus size: 3
108050980 GTTAATAAGG
* * * * *
108050990 ATA ATA ATA ATA ATAA ATA AT- ATG CTA ATG AT- ATA ATA GTA ATG
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
108051034 ATA ATA ATA ATA GTA GTA AAA ATA AAA ATA AT- ATA GTA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
108051081 AAA AAA AGA A-A AT- ATG ATA ATA ATA ATA ATA ATA ATA ATA GTA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * *
108051128 ACA ATA GTA ATA ATA ATA A-A AGGT- ATA ATA AT- ATA TTA GATA GTA
1 ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA -ATA ATA
*
108051173 A-A A-A ATA A-A ATA ATA ATA ATA ATA AAA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
108051212 GTGATATCAG
Statistics
Matches: 171, Mismatches: 33, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
2 21 0.12
3 142 0.83
4 8 0.05
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:108051095 original size:28 final size:29
Alignment explanation
Indices: 108051040--108051217 Score: 93
Period size: 28 Copynumber: 6.1 Consensus size: 29
108051030 AATGATAATA
*
108051040 ATAATAGTAGTAAAAATAAAAATAATAT-
1 ATAATAGTAATAAAAATAAAAATAATATG
108051068 AGTAATAGTAATAAAAA-AAAGAA-AATATG
1 A-TAATAGTAATAAAAATAAA-AATAATATG
* * *
108051097 ATAATAATAATAATAATAATAATAGTAATA-A
1 ATAATAGTAATAAAAATAA-AA-A-TAATATG
* * *
108051128 ACAATAGTAATAATAATAAAAGGT-ATA--
1 ATAATAGTAATAAAAATAAAA-ATAATATG
* * * * *
108051155 ATAATA-TATTAGATAGTAAAAAATAAAATA
1 ATAATAGTAATA-AAAAT-AAAAATAATATG
* *
108051185 ATAATAATAATAAAAATAATAATAATAGTG
1 ATAATAGTAATAAAAATAAAAATAATA-TG
108051215 ATA
1 ATA
108051218 TCAGTAGTAA
Statistics
Matches: 116, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
26 4 0.03
27 10 0.09
28 31 0.27
29 29 0.25
30 17 0.15
31 21 0.18
32 4 0.03
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.28
Consensus pattern (29 bp):
ATAATAGTAATAAAAATAAAAATAATATG
Found at i:108051281 original size:26 final size:26
Alignment explanation
Indices: 108051186--108051279 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 26
108051176 AATAAAATAA
* *
108051186 TAATAATAATAAAAATAATAATAATAG
1 TAATAGTAATAAAAATAGTAATAA-AG
* * **
108051213 TGATA-TCAGTAGTAATAGTAATAAAG
1 TAATAGT-AATAAAAATAGTAATAAAG
* *
108051239 TAATAGTAATAAAAATAGTACTAATG
1 TAATAGTAATAAAAATAGTAATAAAG
108051265 TCAATAGTAATAAAA
1 T-AATAGTAATAAAA
108051280 TAAGGAAAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
26 22 0.42
27 31 0.58
ACGTcount: A:0.56, C:0.03, G:0.11, T:0.30
Consensus pattern (26 bp):
TAATAGTAATAAAAATAGTAATAAAG
Found at i:108051428 original size:3 final size:3
Alignment explanation
Indices: 108051422--108051453 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
108051412 ATGGTGGTGG
108051422 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
108051454 GGATGAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:108056525 original size:22 final size:22
Alignment explanation
Indices: 108056482--108056525 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
108056472 GTAGCGCTAC
* *
108056482 TTTAAGTTCTTCTATCTTCTCT
1 TTTAAGTTCTTCGATCTGCTCT
108056504 TTTAA-TTCTTCGATTCTGCTCT
1 TTTAAGTTCTTCGA-TCTGCTCT
108056526 GACTAGCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.14, C:0.23, G:0.07, T:0.57
Consensus pattern (22 bp):
TTTAAGTTCTTCGATCTGCTCT
Found at i:108059880 original size:9 final size:9
Alignment explanation
Indices: 108059860--108059924 Score: 53
Period size: 9 Copynumber: 7.2 Consensus size: 9
108059850 AGAGGAGAAT
108059860 AATAAGTAAA
1 AATAA-TAAA
108059870 AATAATAAA
1 AATAATAAA
*
108059879 AATGATAAA
1 AATAATAAA
108059888 AATAA-AAA
1 AATAATAAA
* *
108059896 TA-AATAAG
1 AATAATAAA
* *
108059904 AATAATGAG
1 AATAATAAA
108059913 AATAAGTAAA
1 AATAA-TAAA
108059923 AA
1 AA
108059925 AGGAAACTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
7 2 0.05
8 7 0.16
9 26 0.59
10 9 0.20
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (9 bp):
AATAATAAA
Found at i:108059886 original size:25 final size:29
Alignment explanation
Indices: 108059858--108059924 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 29
108059848 TAAGAGGAGA
108059858 ATAATAAGTAAAAAT-AAT-A-AA-AATG
1 ATAATAAGTAAAAATAAATAAGAATAATG
*
108059883 ATAA-AAATAAAAATAAATAAGAATAATG
1 ATAATAAGTAAAAATAAATAAGAATAATG
*
108059911 AGAATAAGTAAAAA
1 ATAATAAGTAAAAA
108059925 AGGAAACTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 9 0.26
25 7 0.21
26 1 0.03
27 2 0.06
28 7 0.21
29 8 0.24
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (29 bp):
ATAATAAGTAAAAATAAATAAGAATAATG
Found at i:108060542 original size:38 final size:37
Alignment explanation
Indices: 108060500--108060592 Score: 98
Period size: 38 Copynumber: 2.4 Consensus size: 37
108060490 TGAAAATAAA
* * *
108060500 AATAACAATACTAATATATTA-AGTTACAATAGTGAAAT
1 AATAACAATA-TAATATATTAGA-TAAAAATAGTAAAAT
*
108060538 AATAATAATGATAATATATTAGATAAAAATAGTAAAAT
1 AATAACAAT-ATAATATATTAGATAAAAATAGTAAAAT
108060576 AATAACTAATAATAATA
1 AATAAC-AAT-ATAATA
108060593 AGGTATAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
38 35 0.76
39 11 0.24
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (37 bp):
AATAACAATATAATATATTAGATAAAAATAGTAAAAT
Found at i:108060603 original size:35 final size:35
Alignment explanation
Indices: 108060454--108060641 Score: 143
Period size: 35 Copynumber: 5.4 Consensus size: 35
108060444 GGTGGTAATA
* * *
108060454 ATAATAATAATAATAATAATAATAATAATAATAGG
1 ATAAAAATAATAATAATAATAATGATAATAATAAG
* * * * * *
108060489 ATGAAAATAAAAATAACAATACTAAT-ATATTAAG
1 ATAAAAATAATAATAATAATAATGATAATAATAAG
* * * *
108060523 -TTACAATAGTGAAATAATAATAATGATAATATATTAG
1 ATAAAAATAAT--AATAATAATAATGATAATA-ATAAG
* *
108060560 ATAAAAATAGTAA-AATAATAACTAATAATAATAAG
1 ATAAAAATAATAATAATAATAA-TGATAATAATAAG
* *
108060595 GTATAAATAATAATAATAATAATGATAATAAT-A-
1 ATAAAAATAATAATAATAATAATGATAATAATAAG
*
108060628 ATAATAATAATAAT
1 ATAAAAATAATAAT
108060642 GGTGGCAATA
Statistics
Matches: 119, Mismatches: 27, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
33 17 0.14
34 7 0.06
35 64 0.54
36 20 0.17
37 3 0.03
38 8 0.07
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (35 bp):
ATAAAAATAATAATAATAATAATGATAATAATAAG
Found at i:108060651 original size:27 final size:24
Alignment explanation
Indices: 108060446--108060717 Score: 110
Period size: 24 Copynumber: 11.0 Consensus size: 24
108060436 ATAAAAATGG
108060446 TGGTAATAATAATAATAATAATAA
1 TGGTAATAATAATAATAATAATAA
**
108060470 TAATAATAATAATAATAGGATGAA-AA
1 TGGTAATAATAATAATA--AT-AATAA
*** * *
108060496 TAAAAATAACAATACTAATATATTAA
1 TGGTAATAATAATAATAATA-A-TAA
* * *
108060522 --GTTACAATAGTGAAATAATAATAA
1 TGGTAATAATAAT--AATAATAATAA
* * * *
108060546 TGATAAT-ATATTAGATAAAAATAG
1 TGGTAATAATAATA-ATAATAATAA
**
108060570 T-AAAATAATAACTAATAATAATAA
1 TGGTAATAATAA-TAATAATAATAA
108060594 -GGT-ATAAATAATAATAATAATAA
1 TGGTAAT-AATAATAATAATAATAA
*
108060617 TGATAATAATAATAATAATAATAA
1 TGGTAATAATAATAATAATAATAA
*** * *
108060641 TGGTGGCAATAATAGTAAAAATATA
1 TGGTAATAATAATAATAATAATA-A
* *
108060666 TGGGTGATACATAATAGAAAGAATAATAA
1 T-GGTAATA-ATAAT---AATAATAATAA
* *
108060695 T-ATAGTAATAATAATAATAATAA
1 TGGTAATAATAATAATAATAATAA
108060718 CATAAACAAT
Statistics
Matches: 185, Mismatches: 40, Indels: 47
0.68 0.15 0.17
Matches are distributed among these distances:
23 30 0.16
24 87 0.47
25 11 0.06
26 38 0.21
27 10 0.05
29 2 0.01
30 7 0.04
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (24 bp):
TGGTAATAATAATAATAATAATAA
Found at i:108060654 original size:3 final size:3
Alignment explanation
Indices: 108060026--108060641 Score: 188
Period size: 3 Copynumber: 206.7 Consensus size: 3
108060016 GTTAATAAGG
* * *
108060026 ATA ATA ATA ATA ATA ATAA ATA AT- ATG CTA ATA AT- ATA ATA GTA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
108060070 ATG ATA ATA ATA ATA GTA GTA AAA ATA AAA ATA AT- ATA GTA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
108060117 ATA AAA AAA ATA A-A AT- ATG ATA ATA ATA GTA GTA ATAA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* * *
108060161 GTA ATA ATA ATA A-A AGGT- ATA ATA AT- ATA TTA GATA GTA A-A A-A
1 ATA ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * * * *
108060204 ATA A-A ATA ATA ATA ATA GTA ATA AAA ATA ATA ATA ATA GTG ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * *
108060251 GTA GTA ATA GTA ATA A-A GTA ATA GTA ATA AAA ATA GTA CTA AT- GTCA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * * *
108060298 ATA GTA ATA A-A ATA AGGA A-A ATA AAA ATT GTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
108060342 AT- GTAA ATA ATA ACA TATA CATA ATA TATA TATA AT- ATA ATG ATA
1 ATA AT-A ATA ATA ATA -ATA -ATA ATA -ATA -ATA ATA ATA ATA ATA
** * * * * * * * * *
108060387 ACG AT- ATGA A-A TTT ATGG GT- TTA ATG CTA A-G ATA ATA ATA ATG
1 ATA ATA AT-A ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
108060430 GTA AAA ATA AAA ATG GTG GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
108060478 ATA ATA ATA GGATGA A-A ATA AAA ATA ACA ATA CTA AT- ATA TTA AGTT
1 ATA ATA ATA --AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
* * * * * *
108060525 ACA ATA GTG A-A ATA ATA ATA ATG ATA AT- ATA TTA GATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
*
108060569 GTA A-A ATA ATA ACTA ATA ATA ATA AGGT- ATAA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA A-TA ATA ATA ATA A--TA AT-A ATA ATA ATA ATA ATA
*
108060616 ATG ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
108060642 GGTGGCAATA
Statistics
Matches: 442, Mismatches: 124, Indels: 94
0.67 0.19 0.14
Matches are distributed among these distances:
2 45 0.10
3 356 0.81
4 37 0.08
5 3 0.01
6 1 0.00
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:108060835 original size:3 final size:3
Alignment explanation
Indices: 108060827--108060871 Score: 67
Period size: 3 Copynumber: 15.3 Consensus size: 3
108060817 AAGTACAAGT
108060827 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATAA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
108060871 A
1 A
108060872 CACAACCAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:108066388 original size:27 final size:28
Alignment explanation
Indices: 108066334--108066385 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
108066324 TTTTTGGAAC
*
108066334 TTAAAATAATTATAAAAAATACAAAATA
1 TTAAAATAATTATAAAAAATAAAAAATA
*
108066362 TTAAAA-ATTTAT-AAAAATAAAAAA
1 TTAAAATAATTATAAAAAATAAAAAA
108066386 ATAATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 5 0.23
28 6 0.27
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (28 bp):
TTAAAATAATTATAAAAAATAAAAAATA
Found at i:108070342 original size:16 final size:15
Alignment explanation
Indices: 108070313--108070346 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
108070303 TTTTTTTTCA
108070313 ATAAAAATAATATAT
1 ATAAAAATAATATAT
*
108070328 ATAAAAATTATTATAT
1 ATAAAAA-TAATATAT
108070344 ATA
1 ATA
108070347 TATAAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAAATAATATAT
Found at i:108070345 original size:18 final size:18
Alignment explanation
Indices: 108070322--108070359 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
108070312 AATAAAAATA
*
108070322 ATATATATAAAAATTATT
1 ATATATATAAAAACTATT
*
108070340 ATATATATATAAACTATT
1 ATATATATAAAAACTATT
108070358 AT
1 AT
108070360 TTAATTGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATATATAAAAACTATT
Found at i:108071109 original size:7 final size:7
Alignment explanation
Indices: 108071085--108071141 Score: 51
Period size: 7 Copynumber: 7.7 Consensus size: 7
108071075 CTAACTGTTG
108071085 ACTAACT
1 ACTAACT
108071092 ACATCAACT
1 AC-T-AACT
108071101 ACTAACT
1 ACTAACT
108071108 ACTAACT
1 ACTAACT
**
108071115 GTTAACT
1 ACTAACT
108071122 ACATAACT
1 AC-TAACT
**
108071130 GTTAACT
1 ACTAACT
108071137 ACTAA
1 ACTAA
108071142 TTGTTACAAC
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
7 26 0.67
8 7 0.18
9 6 0.15
ACGTcount: A:0.42, C:0.25, G:0.04, T:0.30
Consensus pattern (7 bp):
ACTAACT
Found at i:108071136 original size:29 final size:30
Alignment explanation
Indices: 108071087--108071147 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
108071077 AACTGTTGAC
108071087 TAACTACATCAACTACTAACTACTAACTGT
1 TAACTACATCAACTACTAACTACTAACTGT
** *
108071117 TAACTACAT-AACTGTTAACTACTAATTGT
1 TAACTACATCAACTACTAACTACTAACTGT
108071146 TA
1 TA
108071148 CAACCGTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.34
Consensus pattern (30 bp):
TAACTACATCAACTACTAACTACTAACTGT
Found at i:108075720 original size:15 final size:13
Alignment explanation
Indices: 108075688--108075727 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
108075678 CATAAACTAC
*
108075688 TAACTACTAAATT
1 TAACTACTAACTT
108075701 TAACTACTTAACTGT
1 TAACTAC-TAACT-T
108075716 TAACTACTAACT
1 TAACTACTAACT
108075728 ATTACAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 7 0.29
14 9 0.38
15 8 0.33
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.38
Consensus pattern (13 bp):
TAACTACTAACTT
Found at i:108079822 original size:73 final size:73
Alignment explanation
Indices: 108079740--108079998 Score: 491
Period size: 73 Copynumber: 3.5 Consensus size: 73
108079730 ACAACTTGAC
108079740 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
108079805 CACTAACA
66 CACTAACA
*
108079813 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
108079878 CACTAACA
66 CACTAACA
*
108079886 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
108079951 CACTAACA
66 CACTAACA
*
108079959 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
108079999 AATAATAATA
Statistics
Matches: 183, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 183 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:108082711 original size:28 final size:25
Alignment explanation
Indices: 108082643--108082691 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
108082633 TAAAAACAAG
*
108082643 AAAGCTACCATGGTTTCACTTGAAA
1 AAAGCTATCATGGTTTCACTTGAAA
108082668 AAAGCTATCATGGTTTCACTTGAA
1 AAAGCTATCATGGTTTCACTTGAA
108082692 CCGAAAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (25 bp):
AAAGCTATCATGGTTTCACTTGAAA
Found at i:108083187 original size:23 final size:23
Alignment explanation
Indices: 108083143--108083187 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
108083133 TTATACTAAA
* *
108083143 ATTAAAAATAGAATGTAAATATG
1 ATTAAAAATAAAATATAAATATG
*
108083166 ATTAAAAATAAAATATATATAT
1 ATTAAAAATAAAATATAAATAT
108083188 TTAGTATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (23 bp):
ATTAAAAATAAAATATAAATATG
Found at i:108085148 original size:15 final size:15
Alignment explanation
Indices: 108085128--108085164 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
108085118 ATCTTTTATT
108085128 AGTTTATAACCACAA
1 AGTTTATAACCACAA
108085143 AGTTTATAACCACAA
1 AGTTTATAACCACAA
108085158 AGTTTAT
1 AGTTTAT
108085165 TGTAGACAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.32
Consensus pattern (15 bp):
AGTTTATAACCACAA
Found at i:108086027 original size:21 final size:22
Alignment explanation
Indices: 108086001--108086046 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 22
108085991 TACTGTTCGT
108086001 TTTCTTT-TCCTTTTTTTA-AAA
1 TTTCTTTGT-CTTTTTTTACAAA
108086022 TTTCTTTGTCTTTTTTTACAAA
1 TTTCTTTGTCTTTTTTTACAAA
108086044 TTT
1 TTT
108086047 TTAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.17, C:0.13, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTCTTTGTCTTTTTTTACAAA
Found at i:108097553 original size:129 final size:135
Alignment explanation
Indices: 108097414--108097677 Score: 353
Period size: 129 Copynumber: 2.0 Consensus size: 135
108097404 CACTTTTTCC
* ** *
108097414 CATTGGGTTCGTTTCATTTTCGTGTTTCAATGGTGTTTTCTAAAGGATGCTTGAATCTTGATTTT
1 CATTGAGTTCGTTTCATTTTCGTGTTTCAATAATGTTTTCTAAAGGATACTTGAATCTTGATTTT
*
108097479 ATA-AATC-TTTT-TTT-TT-AAAA-GCTAGAAAATTGGATATTTAATGGA-AAATGTAAGCATT
66 ATAGAATCTTTTTCTTTCTTAAAAAGGCTAGAAAATTGGATATTTAATGGAGAAAT-TAACCATT
108097537 TTTTGG
130 TTTTGG
* *
108097543 CATTGAGTTCGTTTCATTTTCGTGTTTTAATAATGTTTTCTAAATGATACTTGAATCTTGATTTT
1 CATTGAGTTCGTTTCATTTTCGTGTTTCAATAATGTTTTCTAAAGGATACTTGAATCTTGATTTT
** * *
108097608 ATAGTTTCTTTTTCTTTCTTGAAAAAAGGGTAGAAAATTGGATATTTAATGGAGAACTTAACCAT
66 ATAGAATCTTTTTCTTTCTT--AAAAAGGCTAGAAAATTGGATATTTAATGGAGAAATTAACCAT
108097673 TTTTT
129 TTTTT
108097678 TTATAATGGA
Statistics
Matches: 115, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
129 62 0.54
130 2 0.02
131 4 0.03
132 3 0.03
133 2 0.02
136 4 0.03
137 35 0.30
138 3 0.03
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.47
Consensus pattern (135 bp):
CATTGAGTTCGTTTCATTTTCGTGTTTCAATAATGTTTTCTAAAGGATACTTGAATCTTGATTTT
ATAGAATCTTTTTCTTTCTTAAAAAGGCTAGAAAATTGGATATTTAATGGAGAAATTAACCATTT
TTTGG
Found at i:108107394 original size:31 final size:31
Alignment explanation
Indices: 108107291--108107382 Score: 184
Period size: 31 Copynumber: 3.0 Consensus size: 31
108107281 ATGTCACAAC
108107291 AGGGACTAAAATTGACCAATTCAAAAAGTAT
1 AGGGACTAAAATTGACCAATTCAAAAAGTAT
108107322 AGGGACTAAAATTGACCAATTCAAAAAGTAT
1 AGGGACTAAAATTGACCAATTCAAAAAGTAT
108107353 AGGGACTAAAATTGACCAATTCAAAAAGTA
1 AGGGACTAAAATTGACCAATTCAAAAAGTA
108107383 CAAGTACTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (31 bp):
AGGGACTAAAATTGACCAATTCAAAAAGTAT
Found at i:108111291 original size:20 final size:19
Alignment explanation
Indices: 108111248--108111298 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
108111238 ACTATGATAC
*
108111248 AAATTTTAAATTTATCGAT
1 AAATTTTAAATATATCGAT
108111267 AAATTTTAAATAT-TCGAATT
1 AAATTTTAAATATATCG-A-T
108111287 AAATTTTTAAAT
1 AAA-TTTTAAAT
108111299 GACCATGCCG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 3 0.11
19 13 0.46
20 4 0.14
21 8 0.29
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (19 bp):
AAATTTTAAATATATCGAT
Found at i:108115753 original size:50 final size:50
Alignment explanation
Indices: 108115696--108115798 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
108115686 TAAGCAAGAG
108115696 ATTAAAAAATTAAATTAAATCGTTAATATTTAGGATGTCCCAACAATGAA
1 ATTAAAAAATTAAATTAAATCGTTAATATTTAGGATGTCCCAACAATGAA
108115746 ATTAAAAAATTAAATTAAATCGTTAATATTTAGGATGTCCCAACAATGAA
1 ATTAAAAAATTAAATTAAATCGTTAATATTTAGGATGTCCCAACAATGAA
108115796 ATT
1 ATT
108115799 GTTTCATTTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (50 bp):
ATTAAAAAATTAAATTAAATCGTTAATATTTAGGATGTCCCAACAATGAA
Found at i:108117080 original size:26 final size:29
Alignment explanation
Indices: 108117051--108117117 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
108117041 TTTTTTAATC
*
108117051 AATTTGATCTTTA-TT-T-TTTTGAGCTA
1 AATTTGATCATTATTTCTATTTTGAGCTA
* *
108117077 AATTTGGTCATTATTTCTATTTTGAGTTA
1 AATTTGATCATTATTTCTATTTTGAGCTA
*
108117106 AATTTGACCATT
1 AATTTGATCATT
108117118 GACATTGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 11 0.33
27 2 0.06
28 1 0.03
29 19 0.58
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.54
Consensus pattern (29 bp):
AATTTGATCATTATTTCTATTTTGAGCTA
Found at i:108117266 original size:23 final size:23
Alignment explanation
Indices: 108117216--108117275 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
108117206 ATGTCACATC
*
108117216 AATAAATAATTTAAAAATTATAAA
1 AATAAATAATTT-AAAATTAGAAA
*
108117240 AATAAATAATTTAAAATTAGAAT
1 AATAAATAATTTAAAATTAGAAA
*
108117263 AAT-AATAAATTAA
1 AATAAATAATTTAA
108117276 CATGAAGTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 9 0.27
23 12 0.36
24 12 0.36
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
AATAAATAATTTAAAATTAGAAA
Found at i:108121236 original size:17 final size:18
Alignment explanation
Indices: 108121216--108121252 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
108121206 AACTATTGTG
108121216 AAAAATAAAATAAA-ATA
1 AAAAATAAAATAAAGATA
108121233 AAAAATAAAATAAAGATA
1 AAAAATAAAATAAAGATA
108121251 AA
1 AA
108121253 GAACACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (18 bp):
AAAAATAAAATAAAGATA
Found at i:108121239 original size:12 final size:12
Alignment explanation
Indices: 108121222--108121246 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
108121212 TGTGAAAAAT
108121222 AAAATAAAATAA
1 AAAATAAAATAA
108121234 AAAATAAAATAA
1 AAAATAAAATAA
108121246 A
1 A
108121247 GATAAAGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:108124222 original size:21 final size:21
Alignment explanation
Indices: 108124198--108124279 Score: 137
Period size: 21 Copynumber: 3.8 Consensus size: 21
108124188 ACGACACAAA
108124198 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
108124219 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
*
108124240 GTGCCTGATACAACACACGAG
1 GTGCCTGATACGACACACGAG
108124261 GTGCCTGAAATACGACACA
1 GTGCCTG--ATACGACACA
108124280 TAAAGTGCCT
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
21 48 0.84
23 9 0.16
ACGTcount: A:0.32, C:0.28, G:0.26, T:0.15
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:108124289 original size:44 final size:41
Alignment explanation
Indices: 108124187--108124292 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 41
108124177 CTGATCAGAG
*
108124187 TACGACAC-AAAGTGCCTGATACGACACACGAGGTGCCTGA
1 TACGACACAAAAGTGCCTGATACAACACACGAGGTGCCTGA
* *
108124227 TACGACACACGAGGTGCCTGATACAACACACGAGGTGCCTGAAA
1 TACGACACA-AAAGTGCCTGATACAACACACGAGGTGCCTG--A
108124271 TACGACACATAAAGTGCCTGAT
1 TACGACACA-AAAGTGCCTGAT
108124293 CGATAAAGCA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 8 0.14
42 28 0.50
44 20 0.36
ACGTcount: A:0.34, C:0.26, G:0.24, T:0.16
Consensus pattern (41 bp):
TACGACACAAAAGTGCCTGATACAACACACGAGGTGCCTGA
Found at i:108124688 original size:15 final size:15
Alignment explanation
Indices: 108124663--108124720 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
108124653 TCATATATAT
108124663 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
108124679 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
108124694 AATAATTTCAATCAA
1 TATAAATTCAATCAA
108124709 TATAAATTCAAT
1 TATAAATTCAAT
108124721 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:108125039 original size:5 final size:5
Alignment explanation
Indices: 108125024--108125100 Score: 145
Period size: 5 Copynumber: 15.2 Consensus size: 5
108125014 TTCTTTAGCT
108125024 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
108125075 TATAA TATAA TATAA TATAA TATAA T
1 TATAA TATAA TATAA TATAA TATAA T
108125101 TAAAACATAA
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 67 0.94
6 4 0.06
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:108125136 original size:8 final size:8
Alignment explanation
Indices: 108125123--108125151 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
108125113 TATCTTTATT
108125123 ATATAATA
1 ATATAATA
108125131 ATATAATA
1 ATATAATA
108125139 ATATAATA
1 ATATAATA
108125147 ATATA
1 ATATA
108125152 TTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:108127995 original size:17 final size:18
Alignment explanation
Indices: 108127973--108128009 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
108127963 CCAATTTGTG
108127973 AAAAATAAAATAAA-ATA
1 AAAAATAAAATAAAGATA
108127990 AAAAATAAAATAAAGATA
1 AAAAATAAAATAAAGATA
108128008 AA
1 AA
108128010 GAACACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (18 bp):
AAAAATAAAATAAAGATA
Found at i:108127996 original size:12 final size:12
Alignment explanation
Indices: 108127979--108128003 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
108127969 TGTGAAAAAT
108127979 AAAATAAAATAA
1 AAAATAAAATAA
108127991 AAAATAAAATAA
1 AAAATAAAATAA
108128003 A
1 A
108128004 GATAAAGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:108138237 original size:11 final size:11
Alignment explanation
Indices: 108138209--108138262 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
108138199 TTGACCTTTC
108138209 CAAGGTATGGG
1 CAAGGTATGGG
*
108138220 -TAGGTATGGG
1 CAAGGTATGGG
*
108138230 AAAGGTATGGG
1 CAAGGTATGGG
108138241 CAAGGTATGGG
1 CAAGGTATGGG
*
108138252 CAAGGAATGGG
1 CAAGGTATGGG
108138263 GTATATTCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.30, C:0.06, G:0.46, T:0.19
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:108142363 original size:18 final size:18
Alignment explanation
Indices: 108142311--108142364 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
108142301 TCAACTACTA
*
108142311 TATACGTAAATAGTA-C-
1 TATACGTGAATAGTACCG
*
108142327 TATACGTGAATAGTGCCG
1 TATACGTGAATAGTACCG
108142345 TATACGTGAATAGTACCG
1 TATACGTGAATAGTACCG
108142363 TA
1 TA
108142365 AACAGTCGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
16 13 0.39
17 1 0.03
18 19 0.58
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (18 bp):
TATACGTGAATAGTACCG
Found at i:108142924 original size:11 final size:11
Alignment explanation
Indices: 108142896--108142949 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
108142886 TTGACCTTTC
108142896 CAAGGTATGGG
1 CAAGGTATGGG
*
108142907 -TAGGTATGGG
1 CAAGGTATGGG
* *
108142917 AAAGGTATGAG
1 CAAGGTATGGG
108142928 CAAGGTATGGG
1 CAAGGTATGGG
*
108142939 CAAGGAATGGG
1 CAAGGTATGGG
108142950 GTATATTCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
10 9 0.25
11 27 0.75
ACGTcount: A:0.31, C:0.06, G:0.44, T:0.19
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:108150494 original size:29 final size:30
Alignment explanation
Indices: 108150453--108150513 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
108150443 TTCTTTTTTG
*
108150453 TTTTTTAATAATGGCCCAATAT-TTT-TAC
1 TTTTTTAATAATGACCCAATATGTTTATAC
* *
108150481 TTTTTTCATAAATGACCCTATATGTTTATAC
1 TTTTTTAAT-AATGACCCAATATGTTTATAC
108150512 TT
1 TT
108150514 CTTCTTCTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 8 0.30
29 11 0.41
30 3 0.11
31 5 0.19
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.51
Consensus pattern (30 bp):
TTTTTTAATAATGACCCAATATGTTTATAC
Found at i:108151377 original size:26 final size:25
Alignment explanation
Indices: 108151332--108151383 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
108151322 AAATTTTCTC
108151332 TTCTTCTTCTCCTCCTCTTTTTCTTT
1 TTCTTCTTCTCCTCCTCTTTTT-TTT
*
108151358 TTCTTCTTCTTCT-CTACTTTTTTTT
1 TTCTTCTTCTCCTCCT-CTTTTTTTT
108151383 T
1 T
108151384 CTTTTACTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (25 bp):
TTCTTCTTCTCCTCCTCTTTTTTTT
Found at i:108151381 original size:29 final size:31
Alignment explanation
Indices: 108151325--108151388 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
108151315 CACTCTAAAA
108151325 TTTTCTCTTCTTCTTCTCCTC-CTCTTTTTC
1 TTTTCTCTTCTTCTTCTCCTCTCTCTTTTTC
* *
108151355 TTTT-TCTTCTTCTTCT-CTACTTTTTTTTTC
1 TTTTCTCTTCTTCTTCTCCT-CTCTCTTTTTC
108151385 TTTT
1 TTTT
108151389 ACTGCCTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 2 0.07
29 13 0.43
30 15 0.50
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (31 bp):
TTTTCTCTTCTTCTTCTCCTCTCTCTTTTTC
Found at i:108156985 original size:13 final size:13
Alignment explanation
Indices: 108156960--108156994 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
108156950 TGGCCCGCCC
108156960 ATATTAA-TTTTT
1 ATATTAATTTTTT
108156972 ATATTAATTTTTT
1 ATATTAATTTTTT
108156985 ATA-TAATTTT
1 ATATTAATTTT
108156995 AAAATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 14 0.64
13 8 0.36
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
ATATTAATTTTTT
Found at i:108157020 original size:20 final size:18
Alignment explanation
Indices: 108156995--108157041 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
108156985 ATATAATTTT
*
108156995 AAAATATATATAAACCATC
1 AAAA-ATATATAAAACATC
108157014 AAAAATACTA-AAAACATC
1 AAAAATA-TATAAAACATC
*
108157032 AAAAAAATAT
1 AAAAATATAT
108157042 TTCACAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 2 0.08
18 16 0.67
19 6 0.25
ACGTcount: A:0.66, C:0.13, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAAATATATAAAACATC
Found at i:108157163 original size:30 final size:30
Alignment explanation
Indices: 108157118--108157175 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
108157108 TTTAACAAGA
108157118 AAATACCTCTAAAATAATAACAAA-ATTAGT
1 AAATACCTCTAAAATAATAA-AAACATTAGT
* *
108157148 AAATGCCTTTAAAATAATAAAAACATTA
1 AAATACCTCTAAAATAATAAAAACATTA
108157176 ACAATAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (30 bp):
AAATACCTCTAAAATAATAAAAACATTAGT
Found at i:108158980 original size:28 final size:28
Alignment explanation
Indices: 108158940--108158995 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
108158930 TTTTCATTTC
*
108158940 ATAATTTGTTGGTGCTTGTAGTTTACTT
1 ATAATTTGTTGGTACTTGTAGTTTACTT
108158968 ATAATTTGTTGGTACTTGTAGTTTACTT
1 ATAATTTGTTGGTACTTGTAGTTTACTT
108158996 TACGTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.54
Consensus pattern (28 bp):
ATAATTTGTTGGTACTTGTAGTTTACTT
Found at i:108159874 original size:22 final size:20
Alignment explanation
Indices: 108159862--108159902 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
108159852 TATCCAAGGT
108159862 TGGGTATCACGATATCCACAC
1 TGGGTATCACGATATCCA-AC
108159883 TGGGTATCACGATATCCAAC
1 TGGGTATCACGATATCCAAC
108159903 CCTTCAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (20 bp):
TGGGTATCACGATATCCAAC
Found at i:108161326 original size:43 final size:43
Alignment explanation
Indices: 108161260--108161426 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
108161250 TGCTTGTACG
* * * * *
108161260 ATGCC-ATATCCCAGATATAGTCTTACATGTTATCACATATCT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCA
* * * * * * *
108161302 ATGCCACTGTCCCAGACAAGGTCTTACATGAAATTGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAA-TCACATATCA
* * *
108161345 ATGCTAATGTACCAGACATGGTCTTACATGTAATCTCA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CA
*
108161388 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
108161427 CTCGATAACC
Statistics
Matches: 95, Mismatches: 25, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
42 7 0.07
43 86 0.91
44 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCA
Found at i:108166681 original size:27 final size:29
Alignment explanation
Indices: 108166621--108166687 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
108166611 ATTTAAATTA
* *
108166621 ATTAAATATATAAAAAATATTCTTATAAAC
1 ATTAATTAT-TAAAAAATAATCTTATAAAC
* *
108166651 ATTATTTATTAAAAAATAAT-TTATATA-
1 ATTAATTATTAAAAAATAATCTTATAAAC
108166678 ATTAATTATT
1 ATTAATTATT
108166688 TTTTTGAGAG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 9 0.28
28 6 0.19
29 10 0.31
30 7 0.22
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (29 bp):
ATTAATTATTAAAAAATAATCTTATAAAC
Found at i:108167090 original size:26 final size:26
Alignment explanation
Indices: 108167054--108167108 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
108167044 AGGTAAATGT
*
108167054 TAATGGGTTAGGTAAATGTTTCATGA
1 TAATGAGTTAGGTAAATGTTTCATGA
108167080 TAATGAGTTAGGTAAATGTTTCATGA
1 TAATGAGTTAGGTAAATGTTTCATGA
108167106 TAA
1 TAA
108167109 GAATTTCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.38
Consensus pattern (26 bp):
TAATGAGTTAGGTAAATGTTTCATGA
Found at i:108168769 original size:27 final size:27
Alignment explanation
Indices: 108168728--108168867 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
108168718 GAGGAAGCGT
*
108168728 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
108168755 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
108168782 TCTGGTGGCTCTGCCACATATATTTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
108168809 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
108168837 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
108168863 TCTGG
1 TCTGG
108168868 CAGTCATGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.05
27 80 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:108168813 original size:54 final size:55
Alignment explanation
Indices: 108168728--108168867 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
108168718 GAGGAAGCGT
* * *
108168728 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * *
108168782 TCTGGTGGCTCTGCCACATATATTTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
108168837 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
108168868 CAGTCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
54 58 0.76
55 18 0.24
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:108173980 original size:121 final size:121
Alignment explanation
Indices: 108173836--108174077 Score: 353
Period size: 121 Copynumber: 2.0 Consensus size: 121
108173826 GCGCGAAATC
* * *
108173836 GTGTATTATCCAAAGATTAGGTTAAATTAAGTTTAATTCTAATATCTAAACTTAAATCCAGAAAA
1 GTGTATTATCCAAAGATTAGGTTAAATTAAGTTTAATTCTAATATCAAAAATTAAATCCACAAAA
* *
108173901 TAAAAATCTTTTTTAATTTATTAAAAT-AATTTTTTA-TTACCTCCAAAGTATCCATT
66 CAAAAATCATTTTTAATTTATTAAAATGAA--TTTTAGTTACCTCCAAAGTATCCATT
* * * *
108173957 GTGTATTATCCAAAGATTAGGTTAAATTAAGTTTAATTTTAGTATCAAAAATTAATTCTACAAAA
1 GTGTATTATCCAAAGATTAGGTTAAATTAAGTTTAATTCTAATATCAAAAATTAAATCCACAAAA
* *
108174022 CAAAATTCATTTTTAATTTATTAAAATGAATTTTAGTTACTTCCAAAGTATCCATT
66 CAAAAATCATTTTTAATTTATTAAAATGAATTTTAGTTACCTCCAAAGTATCCATT
108174078 AAGAGGAATA
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
120 5 0.05
121 101 0.94
122 2 0.02
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41
Consensus pattern (121 bp):
GTGTATTATCCAAAGATTAGGTTAAATTAAGTTTAATTCTAATATCAAAAATTAAATCCACAAAA
CAAAAATCATTTTTAATTTATTAAAATGAATTTTAGTTACCTCCAAAGTATCCATT
Found at i:108175513 original size:87 final size:87
Alignment explanation
Indices: 108175358--108175556 Score: 236
Period size: 87 Copynumber: 2.3 Consensus size: 87
108175348 CAAATACTCC
* * * ** **
108175358 AATTTGTGGATGAACCACCAATGTTTGCAGATAAACAGCCCATAGGTTGTGAATGCACAATGTAT
1 AATTTGTGGATGAACCACTAGTGTTTGCAGATAAACAGCCAATAGGTCATGAATGCACAACATAT
108175423 TTGCAAATAAAAGCTACCAGTA
66 TTGCAAATAAAAGCTACCAGTA
* * ** * * *
108175445 AGTTTGTGGATGAACCAGTAGTGTTTGCAGATAAATTGTCAATAGGTCATGAGTGCACAACATGT
1 AATTTGTGGATGAACCACTAGTGTTTGCAGATAAACAGCCAATAGGTCATGAATGCACAACATAT
* *
108175510 TTGCAGATAAAAGCTGCCAGTA
66 TTGCAAATAAAAGCTACCAGTA
* *
108175532 AATTCGTGGATAAACCACTAGTGTT
1 AATTTGTGGATGAACCACTAGTGTT
108175557 GCAAATTATT
Statistics
Matches: 92, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
87 92 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (87 bp):
AATTTGTGGATGAACCACTAGTGTTTGCAGATAAACAGCCAATAGGTCATGAATGCACAACATAT
TTGCAAATAAAAGCTACCAGTA
Found at i:108176790 original size:29 final size:29
Alignment explanation
Indices: 108176706--108176816 Score: 80
Period size: 29 Copynumber: 3.8 Consensus size: 29
108176696 TCATTAGGGT
*
108176706 TTATCAGGCACTATGTGCCATTGATTACAA
1 TTATCAGGCACTATGTGCCAGTG-TTACAA
*** * ** *
108176736 TTATCAGATGCTTTGTATC-GACGTTACAA
1 TTATCAGGCACTATGTGCCAG-TGTTACAA
* * *
108176765 TTATCAGGCACTCTGTGCCAGTGTTATAT
1 TTATCAGGCACTATGTGCCAGTGTTACAA
* *
108176794 TTATCAGGTACTATGTTCCAGTG
1 TTATCAGGCACTATGTGCCAGTG
108176817 GTGGATATCA
Statistics
Matches: 59, Mismatches: 20, Indels: 5
0.70 0.24 0.06
Matches are distributed among these distances:
29 44 0.75
30 15 0.25
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (29 bp):
TTATCAGGCACTATGTGCCAGTGTTACAA
Done.