Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 335 of 344
Found at i:108694772 original size:10 final size:10
Alignment explanation
Indices: 108694757--108694815 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
108694747 AATTTTAGTT
108694757 TTTATCTTTA
1 TTTATCTTTA
*
108694767 TTTATCCTTA
1 TTTATCTTTA
108694777 TTTATCTTTA
1 TTTATCTTTA
*
108694787 ATTATCTTTA
1 TTTATCTTTA
108694797 TTTAT-TTGTA
1 TTTATCTT-TA
108694807 TTTATCTTT
1 TTTATCTTT
108694816 TAGAATTGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:108698847 original size:60 final size:59
Alignment explanation
Indices: 108698780--108698918 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 59
108698770 CCAACTGTGT
*
108698780 TGATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATAC
1 TGATATGGGCAAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATAC
* * * *
108698840 TGATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATAC
*
108698900 TGATACGGGCTAAGGCCCA
1 TGATATGGGC-AAGGCCCA
108698919 GTTAACACTA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (59 bp):
TGATATGGGCAAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATAC
Found at i:108701783 original size:13 final size:13
Alignment explanation
Indices: 108701765--108701834 Score: 54
Period size: 13 Copynumber: 5.3 Consensus size: 13
108701755 AACCCAATTT
108701765 TTTTATTATTTTA
1 TTTTATTATTTTA
108701778 TTTTATT-TTATTA
1 TTTTATTATT-TTA
*
108701791 TTTTTTATTACTTTA
1 --TTTTATTATTTTA
** *
108701806 TTTTATCCTATTA
1 TTTTATTATTTTA
*
108701819 -TTTATTACTTTA
1 TTTTATTATTTTA
108701831 TTTT
1 TTTT
108701835 GGATATTAGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 10 0.23
13 22 0.51
15 10 0.23
16 1 0.02
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTATTATTTTA
Found at i:108701788 original size:15 final size:15
Alignment explanation
Indices: 108701761--108701824 Score: 62
Period size: 13 Copynumber: 4.2 Consensus size: 15
108701751 AAGCAACCCA
*
108701761 ATTTTTTTATTATTTT
1 ATTTTATTATTA-TTT
108701777 ATTTTATT-TTA-TT
1 ATTTTATTATTATTT
108701790 ATTTT-TTATTACTTT
1 ATTTTATTATTA-TTT
108701805 ATTTTATCCTATTATTT
1 ATTTTAT--TATTATTT
108701822 ATT
1 ATT
108701825 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
12 2 0.05
13 10 0.24
15 10 0.24
16 8 0.20
17 6 0.15
18 5 0.12
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTTATTATTATTT
Found at i:108701788 original size:18 final size:18
Alignment explanation
Indices: 108701765--108701807 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
108701755 AACCCAATTT
108701765 TTTTATTATTTTATT-TTA
1 TTTTATTATTTT-TTATTA
108701783 TTTTATTATTTTTTATTA
1 TTTTATTATTTTTTATTA
*
108701801 CTTTATT
1 TTTTATT
108701808 TTATCCTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTATTATTTTTTATTA
Found at i:108701805 original size:28 final size:28
Alignment explanation
Indices: 108701763--108701834 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
108701753 GCAACCCAAT
* **
108701763 TTTTTTATTATTTTATTTTATTTTATTA
1 TTTTTTATTACTTTATTTTATCCTATTA
108701791 TTTTTTATTACTTTATTTTATCCTATTA
1 TTTTTTATTACTTTATTTTATCCTATTA
108701819 ---TTTATTACTTTATTTT
1 TTTTTTATTACTTTATTTT
108701835 GGATATTAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
25 16 0.39
28 25 0.61
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTTTTATTACTTTATTTTATCCTATTA
Found at i:108701817 original size:25 final size:23
Alignment explanation
Indices: 108701761--108701834 Score: 89
Period size: 25 Copynumber: 3.2 Consensus size: 23
108701751 AAGCAACCCA
* *
108701761 ATTTTTTTATTA-TT-TTATTTT
1 ATTTTATTATTATTTATTACTTT
*
108701782 ATTTTATTATTTTTTATTACTTT
1 ATTTTATTATTATTTATTACTTT
108701805 ATTTTATCCTATTATTTATTACTTT
1 ATTTTAT--TATTATTTATTACTTT
108701830 ATTTT
1 ATTTT
108701835 GGATATTAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.22
22 2 0.04
23 13 0.29
25 20 0.44
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (23 bp):
ATTTTATTATTATTTATTACTTT
Found at i:108703175 original size:10 final size:11
Alignment explanation
Indices: 108703149--108703174 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
108703139 TAGTAATGAT
108703149 AAAAAGAAAAA
1 AAAAAGAAAAA
108703160 AAAAAGAAAAA
1 AAAAAGAAAAA
108703171 AAAA
1 AAAA
108703175 GTGATGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:108703816 original size:10 final size:10
Alignment explanation
Indices: 108703801--108703859 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
108703791 AATTTTAGTT
108703801 TTTATCTTTA
1 TTTATCTTTA
*
108703811 TTTATCCTTA
1 TTTATCTTTA
108703821 TTTATCTTTA
1 TTTATCTTTA
*
108703831 ATTATCTTTA
1 TTTATCTTTA
108703841 TTTAT-TTGTA
1 TTTATCTT-TA
108703851 TTTATCTTT
1 TTTATCTTT
108703860 TAGAATTGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:108709102 original size:28 final size:28
Alignment explanation
Indices: 108709042--108709102 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
108709032 TTACATAATT
*
108709042 TAATTATTTAATTAATAAATAAAATATAA
1 TAATTATTTAACTAATAAAT-AAATATAA
108709071 -AATTATTTAACTACATAAAT-AATATAA
1 TAATTATTTAACTA-ATAAATAAATATAA
108709098 TAATT
1 TAATT
108709103 TTTTCTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 7 0.24
28 16 0.55
29 6 0.21
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (28 bp):
TAATTATTTAACTAATAAATAAATATAA
Found at i:108710877 original size:113 final size:112
Alignment explanation
Indices: 108710628--108711229 Score: 896
Period size: 112 Copynumber: 5.3 Consensus size: 112
108710618 AATACGAGAT
*
108710628 AAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAGT-CAACCAAAAAAAAATTTGAA
1 AAAAAAAATTTT-GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTTGAA
108710692 TTTTTTTCAAAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
65 TTTTTTTCAAAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
* * *
108710740 AAAAAAAATTTAGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA-CAAAAAAAATTTTGATT
1 AAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTTGAAT
*
108710804 TTTTTTCCAAAAAAAAATTTTTTTGCTCTCTAAAAATACAAGTTTTAA
66 TTTTTT-CAAAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
*
108710852 AAAAAAAATTTTGGATGCTGGCCTGTCAATGGCCGGCACCTAGTACAACCAAAAAAAAATTTTGA
1 AAAAAAAATTTTGG-TGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAA-TTTGA
*
108710917 AATTTTTTCAAAAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
64 ATTTTTTTC-AAAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
* *
108710967 AAAAAAAA-TTTGAGTGCTGGCCTGT-AATGGCCGGCACCCAGTACAACCCAAAAAAAA-TCGAA
1 AAAAAAAATTTTG-GTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTTGAA
108711029 TTTTTTTC-AAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
65 TTTTTTTCAAAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
* * *
108711076 AAAAAATATTTTTGGGTGCTGGCCTGTCAATTGCCGGCACCCAGTACAACCAAAAAAAAATTCGA
1 AAAAAA-AATTTT-GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTTGA
* ***
108711141 TTTTTTTTC--AAAATTTTTTTTTTGCTCTCTAAAAATACGAGTTTTAA
64 ATTTTTTTCAAAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
*
108711188 AAATAAAAATTTTTTGGTGCTGGCCTGTCAATAGCCGGCACC
1 AAA-AAAAA--TTTTGGTGCTGGCCTGTCAATGGCCGGCACC
108711230 AAACCTTATA
Statistics
Matches: 451, Mismatches: 24, Indels: 29
0.89 0.05 0.06
Matches are distributed among these distances:
109 45 0.10
110 1 0.00
111 77 0.17
112 137 0.30
113 103 0.23
114 29 0.06
115 59 0.13
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (112 bp):
AAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTTGAAT
TTTTTTCAAAAAAAAATTTTTTTGCTCTCTAAAAATACGAGTTTTAA
Found at i:108711771 original size:21 final size:21
Alignment explanation
Indices: 108711745--108711787 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
108711735 AGAATGTTTG
108711745 TATTTTTTTATATCTTTAAAT
1 TATTTTTTTATATCTTTAAAT
108711766 TATTTTTTTATATCTTTAAAT
1 TATTTTTTTATATCTTTAAAT
108711787 T
1 T
108711788 TAATATAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (21 bp):
TATTTTTTTATATCTTTAAAT
Found at i:108714318 original size:110 final size:109
Alignment explanation
Indices: 108714094--108714602 Score: 715
Period size: 110 Copynumber: 4.6 Consensus size: 109
108714084 TCATAAATTT
108714094 GGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAGC
1 GGTGCCGGCCATTGACAGGCCAGCACCC-AAA-TTTTTTTTTTAAAACTCGTATTTTTAGAGAGC
*
108714159 AAAAAAAAAAATTTTGAAAAAAATTCGAAATTTTTTTTTGGGTTGTACTG
64 -AAAAAAAAAA-TTTGAAAAAAATTCAAAATTTTTTTTT--GTTGTACTG
*
108714209 GGTGCCGGCCATTAACAGGCCAGCACCCAAA-TTTTTTTTTAAAACTCGTATTTTTAGAGAGCAA
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGCAA
108714273 AAAAAAAATTTGAAAAAAATTCAAAATTTTTTTTTGGGTTGTACTG
66 AAAAAAAATTTGAAAAAAATTCAAAATTTTTTTTT--GTTGTACTG
*
108714319 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTTAAAACTCGTTTTTTTAGAGAGCA
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAA-TTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
** *
108714384 AAAAAAATTTTTTTTGAAAAAAATT-AGAA-TTTTTTTTGTTGTACTG
65 AAAAAAA---AATTTGAAAAAAATTCAAAATTTTTTTTTGTTGTACTG
*
108714430 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTT-AAACTCGTATTTTTAGAGACCAA
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGCAA
***** *
108714494 AAATTTTTTTTTGAAAAAAA-TC-GAATTTTTTTTTGTTGTACTG
66 AAA-AAAAATTTGAAAAAAATTCAAAATTTTTTTTTGTTGTACTG
* *
108714537 GGTGCCGGCTATTGACAGGCCAGCACCCAAAATTTTTTTTTTAAAACTCATATTTTTAGAGAGCA
1 GGTGCCGGCCATTGACAGGCCAGCACCC-AAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
108714602 A
65 A
108714603 TTTTTTTTTT
Statistics
Matches: 369, Mismatches: 15, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
106 4 0.01
107 57 0.15
108 13 0.04
109 45 0.12
110 77 0.21
111 50 0.14
112 69 0.19
113 8 0.02
114 6 0.02
115 40 0.11
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (109 bp):
GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGCAA
AAAAAAAATTTGAAAAAAATTCAAAATTTTTTTTTGTTGTACTG
Found at i:108714610 original size:34 final size:34
Alignment explanation
Indices: 108714567--108714636 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
108714557 CAGCACCCAA
*
108714567 AATTTTTTTTTTAAAACTCATATTTTTAGAGAGC
1 AATTTTTTTTTTAAAACTCATATTTTTAAAGAGC
*
108714601 AATTTTTTTTTTAAAACTCGTATTTTTAAAGAGC
1 AATTTTTTTTTTAAAACTCATATTTTTAAAGAGC
108714635 AA
1 AA
108714637 AAAAAAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (34 bp):
AATTTTTTTTTTAAAACTCATATTTTTAAAGAGC
Found at i:108714724 original size:147 final size:144
Alignment explanation
Indices: 108714459--108714749 Score: 433
Period size: 147 Copynumber: 2.0 Consensus size: 144
108714449 CCAGCACCCA
* * **
108714459 AATTTTTTTTTTAAACTCGTATTTTTAGAGACCAAAAATTTTTTTTTGAAAAAAATCGAATTTTT
1 AATTTTTTTTTTAAACTCGTATTTTTAAAGACAAAAAAAATTTTTTTGAAAAAAATCGAATTTTT
* * *
108714524 TTTTGTTGTACTGGGTGCCGGCTATTGACAGGCCAGCACCC--AAAATTTTTTTTTTAAAACTCA
66 TTTTGTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTTTAAAAACTCA
108714587 TATTTTTAGAGAGC
131 TATTTTTAGAGAGC
108714601 AATTTTTTTTTTAAAACTCGTATTTTTAAAGAGCAAAAAAAAATTTTTTTGAAAAAAATTCGAAA
1 AATTTTTTTTTT-AAACTCGTATTTTTAAAGA-C-AAAAAAAATTTTTTTGAAAAAAA-TCG-AA
108714666 TTTTTTTTTGTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTTTTTAA
61 TTTTTTTTTGTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAA--TTTTTTTTAA
*
108714731 AAACTCGTATTTTTAGAGA
124 AAACTCATATTTTTAGAGA
108714750 ACAAAAAATT
Statistics
Matches: 132, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
142 12 0.09
143 18 0.14
144 1 0.01
145 20 0.15
146 3 0.02
147 47 0.36
149 4 0.03
151 27 0.20
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (144 bp):
AATTTTTTTTTTAAACTCGTATTTTTAAAGACAAAAAAAATTTTTTTGAAAAAAATCGAATTTTT
TTTTGTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTTTAAAAACTCA
TATTTTTAGAGAGC
Found at i:108714736 original size:117 final size:116
Alignment explanation
Indices: 108714601--108714813 Score: 304
Period size: 117 Copynumber: 1.8 Consensus size: 116
108714591 TTTAGAGAGC
*
108714601 AATTTTTTTTTTAAAACTCGTATTTTTAAAGAGCAAAAAAAAATTTTTTTG-AAAAAAATTCGAA
1 AATTTTTTTTTTAAAACTCGTATTTTTAAAGAACAAAAAAAAATTTTTTTGCAAAAAAATTC-AA
*
108714665 ATTTTTTTTT-GTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAA
65 ATTTTTTTTTGGTTG-ACTGGGTGCAGGCCATTGACAGGCCAGCACCCAAAAA
* *** *
108714717 AATTTTTTTTTTAAAAACTCGTATTTTTAGAGAACAAAAAATTTTTTTTTTGCTCTAAAAAATTC
1 AATTTTTTTTTT-AAAACTCGTATTTTTAAAGAACAAAAAAAAATTTTTTTG--CAAAAAAATTC
108714782 AAATTTTTTTTTGGTTGACTGGGTGCAGGCCA
63 AAATTTTTTTTTGGTTGACTGGGTGCAGGCCA
108714814 GCACCAAAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
116 12 0.14
117 34 0.40
119 26 0.31
120 13 0.15
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (116 bp):
AATTTTTTTTTTAAAACTCGTATTTTTAAAGAACAAAAAAAAATTTTTTTGCAAAAAAATTCAAA
TTTTTTTTTGGTTGACTGGGTGCAGGCCATTGACAGGCCAGCACCCAAAAA
Found at i:108729201 original size:29 final size:29
Alignment explanation
Indices: 108729164--108729222 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
108729154 ATTTATTTTG
*
108729164 TTTTATTATTTAAATAATTGTTGTTATCC
1 TTTTATTATTTAAATAATTATTGTTATCC
* *
108729193 TTTTGTTATTTGAATAATTATTGTTATCC
1 TTTTATTATTTAAATAATTATTGTTATCC
108729222 T
1 T
108729223 ATTCAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.07, G:0.08, T:0.59
Consensus pattern (29 bp):
TTTTATTATTTAAATAATTATTGTTATCC
Found at i:108733414 original size:16 final size:16
Alignment explanation
Indices: 108733393--108733425 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
108733383 AAAAATATAA
108733393 CGGGCTGAATCGGGCT
1 CGGGCTGAATCGGGCT
108733409 CGGGCTGAATCGGGCT
1 CGGGCTGAATCGGGCT
108733425 C
1 C
108733426 AGGCGGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.27, G:0.42, T:0.18
Consensus pattern (16 bp):
CGGGCTGAATCGGGCT
Found at i:108733434 original size:16 final size:16
Alignment explanation
Indices: 108733399--108733434 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
108733389 ATAACGGGCT
* *
108733399 GAATCGGGCTCGGGCT
1 GAATCGGGCTCAGGCG
108733415 GAATCGGGCTCAGGCG
1 GAATCGGGCTCAGGCG
108733431 GAAT
1 GAAT
108733435 TTAAGTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.19, C:0.22, G:0.42, T:0.17
Consensus pattern (16 bp):
GAATCGGGCTCAGGCG
Found at i:108738737 original size:42 final size:42
Alignment explanation
Indices: 108738690--108738773 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
108738680 TCTACTTTCC
108738690 CAAGAATGTACAAGCAAGTGTTTTCATCAATTTTGCTTGGCA
1 CAAGAATGTACAAGCAAGTGTTTTCATCAATTTTGCTTGGCA
*
108738732 CAAGAATGTACATGCAAGTGTTTTCATCAATTTTGCTTGGCA
1 CAAGAATGTACAAGCAAGTGTTTTCATCAATTTTGCTTGGCA
108738774 ACAATGATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (42 bp):
CAAGAATGTACAAGCAAGTGTTTTCATCAATTTTGCTTGGCA
Found at i:108739336 original size:21 final size:22
Alignment explanation
Indices: 108739286--108739336 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
108739276 GTCCGACCCA
108739286 ATTTGTT-TTCTAATTTTTTAT
1 ATTTGTTATTCTAATTTTTTAT
* * *
108739307 ATGTCTTATTTTAA-TTTTTAT
1 ATTTGTTATTCTAATTTTTTAT
108739328 ATTTGTTAT
1 ATTTGTTAT
108739337 ATTGTTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.69
Consensus pattern (22 bp):
ATTTGTTATTCTAATTTTTTAT
Found at i:108746700 original size:21 final size:22
Alignment explanation
Indices: 108746674--108746720 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
108746664 CTCTGCTCAA
*
108746674 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
108746695 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
108746717 ACTC
1 ACTC
108746721 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:108750534 original size:17 final size:19
Alignment explanation
Indices: 108750512--108750556 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
108750502 TATTCTTTCA
108750512 AAAATATTTA-TTT-AAAT
1 AAAATATTTATTTTAAAAT
*
108750529 AAAATACTTATTTTAAAAT
1 AAAATATTTATTTTAAAAT
*
108750548 AATATATTT
1 AAAATATTT
108750557 TAAGATACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
18 3 0.13
19 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
AAAATATTTATTTTAAAAT
Found at i:108750547 original size:14 final size:14
Alignment explanation
Indices: 108750528--108750566 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
108750518 TTTATTTAAA
108750528 TAAAATACTTATTT
1 TAAAATACTTATTT
*
108750542 TAAAATAATATATTT
1 TAAAATACT-TATTT
*
108750557 TAAGATACTT
1 TAAAATACTT
108750567 TAATCTTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (14 bp):
TAAAATACTTATTT
Found at i:108751816 original size:256 final size:256
Alignment explanation
Indices: 108751362--108751876 Score: 816
Period size: 256 Copynumber: 2.0 Consensus size: 256
108751352 TTCTCATTCT
* *
108751362 CTTTAACAGTTTAGTTTCTCTCTCTCTTTTTTTTTCATGAAACAGCTTTAAACGTTAAGAATCTA
1 CTTTAACAGTTTAGTTTCTCTCTCTCTTCTTTTTTCACGAAACAGCTTTAAACGTTAAGAATCTA
*
108751427 CGAATCAAAATACAAATAACTTTCTACTTTGATATTTGACATTAACTATCAGATCAAATTGGATC
66 CGAATCAAAATACAAATAACTTTCTACTTCGATATTTGACATTAACTATCAGATCAAATTGGATC
* * *
108751492 TAAGGTATGTTCTTCTACTCATCGATGAGAACTAATCTACCATGCTGATCGTTTAGTCGTTGCTT
131 TAAGGTATGTTCTTCTACTCATCGATAAGAACTAATCCACCATACTGATCGTTTAGTCGTTGCTT
*
108751557 GGAGTTCGTTAATCAGACTTTAAAAGAAAAA-CATTAACAGTAAAAAGACTTAAATAAAAA
196 GGAGTTCGTTAATCAAACTTTAAAAGAAAAAGCATTAACAGTAAAAAGACTTAAATAAAAA
* *
108751617 CTTTAACAGTTTAGTTTCTCTCTCTCTCTCTTTTTTCACGAAATAGCTTTAAATGTTAAGAATCT
1 CTTTAACAGTTTAGTTTCTCTCTCTCT-TCTTTTTTCACGAAACAGCTTTAAACGTTAAGAATCT
* * * * ** *
108751682 ATGAATCAAAATGCAAATAACTTTCTACTTCGATATTTGACATTAATTATCAGGTTGATTTGGAT
65 ACGAATCAAAATACAAATAACTTTCTACTTCGATATTTGACATTAACTATCAGATCAAATTGGAT
* ** *
108751747 CTAAGGTATGTTCTTCTACTCATTGATAAGTGCTAATCCACCATACTGATTGTTTAGTCGTTGCT
130 CTAAGGTATGTTCTTCTACTCATCGATAAGAACTAATCCACCATACTGATCGTTTAGTCGTTGCT
* *
108751812 TGGAGTTTGTTAATCAAACTTTAAAAGAAAAAGCATTAACAGTCAAAAGACTTAAATAAAAA
195 TGGAGTTCGTTAATCAAACTTTAAAAGAAAAAGCATTAACAGTAAAAAGACTTAAATAAAAA
108751874 CTT
1 CTT
108751877 CTGGTTAGTT
Statistics
Matches: 236, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
255 27 0.11
256 178 0.75
257 31 0.13
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (256 bp):
CTTTAACAGTTTAGTTTCTCTCTCTCTTCTTTTTTCACGAAACAGCTTTAAACGTTAAGAATCTA
CGAATCAAAATACAAATAACTTTCTACTTCGATATTTGACATTAACTATCAGATCAAATTGGATC
TAAGGTATGTTCTTCTACTCATCGATAAGAACTAATCCACCATACTGATCGTTTAGTCGTTGCTT
GGAGTTCGTTAATCAAACTTTAAAAGAAAAAGCATTAACAGTAAAAAGACTTAAATAAAAA
Found at i:108753084 original size:13 final size:13
Alignment explanation
Indices: 108753066--108753091 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
108753056 ATATCCGAAA
108753066 AATATTAAAAATT
1 AATATTAAAAATT
108753079 AATATTAAAAATT
1 AATATTAAAAATT
108753092 TTGAAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATTAAAAATT
Found at i:108755519 original size:19 final size:20
Alignment explanation
Indices: 108755489--108755533 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
108755479 TTAAAGCTTT
108755489 TATTTTTAATATAATTAAAA
1 TATTTTTAATATAATTAAAA
* *
108755509 TATTTTT-ATATTATTAAAT
1 TATTTTTAATATAATTAAAA
108755528 TATTTT
1 TATTTT
108755534 ATTATCTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTTTTAATATAATTAAAA
Found at i:108757204 original size:12 final size:12
Alignment explanation
Indices: 108757187--108757225 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
108757177 CCGGATACTG
108757187 TCAAGCTTGAGC
1 TCAAGCTTGAGC
*
108757199 TCAAGCTCGAGC
1 TCAAGCTTGAGC
*
108757211 TCGAGCTTGA-C
1 TCAAGCTTGAGC
108757222 TCAA
1 TCAA
108757226 AATTCAGAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (12 bp):
TCAAGCTTGAGC
Found at i:108761255 original size:23 final size:24
Alignment explanation
Indices: 108761229--108761286 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
108761219 GTTATATCAA
*
108761229 TTTAAATTAATT-CAGA-GATAAAT
1 TTTAAATTAATTGCAGACCAT-AAT
*
108761252 TTTAAATTGACTTGCAGACCATAAT
1 TTTAAATT-AATTGCAGACCATAAT
108761277 TTTAAATTAA
1 TTTAAATTAA
108761287 AACAAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 8 0.28
24 4 0.14
25 15 0.52
26 2 0.07
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (24 bp):
TTTAAATTAATTGCAGACCATAAT
Found at i:108767519 original size:57 final size:56
Alignment explanation
Indices: 108767408--108767520 Score: 124
Period size: 57 Copynumber: 2.0 Consensus size: 56
108767398 ATAAAATATC
* * *
108767408 TTTTAAAAAAATCATTTATTTTTAACACTTTTTAAATAATTTTAATGATTTTAAAT
1 TTTTAAAAAAATCATTTATTTTTAACACTTTTTAAATAATTTAAAAGATATTAAAT
* *
108767464 TTTTAAAAGACAAT-ATTTATTTTTTAAGA-TTTTTAAA-AATTTAAAAGGTAATTAAAT
1 TTTTAAAA-A-AATCATTTA-TTTTTAACACTTTTTAAATAATTTAAAAGAT-ATTAAAT
108767521 GTCGATGTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
56 17 0.35
57 20 0.42
58 11 0.23
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (56 bp):
TTTTAAAAAAATCATTTATTTTTAACACTTTTTAAATAATTTAAAAGATATTAAAT
Found at i:108769831 original size:24 final size:24
Alignment explanation
Indices: 108769804--108769859 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
108769794 TATATTCTAA
* * *
108769804 TTATATTTTATAAATAATTAATAT
1 TTATATTTTAAAAACAATTAAAAT
*
108769828 TTAT-TATTTAAAAACATTTAAAAT
1 TTATAT-TTTAAAAACAATTAAAAT
108769852 TTATATTT
1 TTATATTT
108769860 CATATGTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.04
24 24 0.92
25 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
TTATATTTTAAAAACAATTAAAAT
Found at i:108771044 original size:30 final size:31
Alignment explanation
Indices: 108770996--108771059 Score: 112
Period size: 30 Copynumber: 2.1 Consensus size: 31
108770986 ACTTAACGAG
108770996 CAAATGTCTCTAAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAAATAATAACAAAATTAA
*
108771027 CAAATGTCT-TTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAAATAATAACAAAATTAA
108771057 CAA
1 CAA
108771060 TAAAACAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 23 0.72
31 9 0.28
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (31 bp):
CAAATGTCTCTAAAAATAATAACAAAATTAA
Found at i:108772552 original size:27 final size:26
Alignment explanation
Indices: 108772497--108772552 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 26
108772487 TTCATGTTTG
* * *
108772497 ATATTTACATAATTTTATGGAATACA
1 ATATTTACATAATTTAATGCAATAAA
108772523 ATATTTACATAAATTTAAT-CAACTAAA
1 ATATTTACAT-AATTTAATGCAA-TAAA
108772550 ATA
1 ATA
108772553 ATCAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (26 bp):
ATATTTACATAATTTAATGCAATAAA
Found at i:108776947 original size:5 final size:6
Alignment explanation
Indices: 108776930--108776956 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
108776920 CTTTTTTTAA
108776930 TATTTT TATTTT TATTTT TATTTT TAT
1 TATTTT TATTTT TATTTT TATTTT TAT
108776957 GTTCGGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:108782367 original size:32 final size:33
Alignment explanation
Indices: 108782331--108782395 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
108782321 GAGATGATGG
108782331 CACATAATAAT-AAAAAATTAAAAATCAAATTC
1 CACATAATAATAAAAAAATTAAAAATCAAATTC
108782363 CACATAATAATAAAAAAATTAAAAATCAAATTC
1 CACATAATAATAAAAAAATTAAAAATCAAATTC
108782396 ACTTAGTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 11 0.34
33 21 0.66
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.25
Consensus pattern (33 bp):
CACATAATAATAAAAAAATTAAAAATCAAATTC
Found at i:108785495 original size:17 final size:19
Alignment explanation
Indices: 108785470--108785511 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
108785460 TAGATTGAAT
*
108785470 TTTTTAAATAG-TTATA-A
1 TTTTAAAATAGTTTATATA
108785487 TTTTAAAATAGTTTATATA
1 TTTTAAAATAGTTTATATA
108785506 TTTTAA
1 TTTTAA
108785512 TTAAATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.45
18 5 0.23
19 7 0.32
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTAAAATAGTTTATATA
Found at i:108786146 original size:19 final size:18
Alignment explanation
Indices: 108786108--108786173 Score: 62
Period size: 19 Copynumber: 3.6 Consensus size: 18
108786098 CCTTAAGTTG
* *
108786108 TTAAAAATATATATACTTT
1 TTAAAATTATTTATA-TTT
108786127 TTAAAATTACTTTATA-TT
1 TTAAAATTA-TTTATATTT
*
108786145 TTAAAATTATTTTTAATTT
1 TTAAAATTATTTAT-ATTT
*
108786164 TTAAATTTAT
1 TTAAAATTAT
108786174 GCTTGCCACA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.10
18 12 0.30
19 19 0.47
20 5 0.12
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAAAATTATTTATATTT
Found at i:108786169 original size:18 final size:18
Alignment explanation
Indices: 108786119--108786170 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
108786109 TAAAAATATA
108786119 TATACTTTTTAAAATTACTT
1 TATA-TTTTT-AAATTACTT
*
108786139 TATATTTTAAAATTA-TT
1 TATATTTTTAAATTACTT
*
108786156 TTTAATTTTTAAATT
1 TAT-ATTTTTAAATT
108786171 TATGCTTGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 4 0.14
18 16 0.57
19 4 0.14
20 4 0.14
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATTTTTAAATTACTT
Found at i:108791785 original size:22 final size:24
Alignment explanation
Indices: 108791751--108791795 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
108791741 TTTTTAAAGA
108791751 ATTTTCTAAAAAATAA-AATAATT
1 ATTTTCTAAAAAATAATAATAATT
108791774 ATTTT-TAAAAAATAATAATAAT
1 ATTTTCTAAAAAATAATAATAAT
108791796 AAACAGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTTTCTAAAAAATAATAATAATT
Found at i:108794441 original size:23 final size:23
Alignment explanation
Indices: 108794411--108794454 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
108794401 ATTAACACCG
*
108794411 AAAATTAA-AATATGGAATATATT
1 AAAATTAATAAAATGG-ATATATT
108794434 AAAATTAATAAAATGGATATA
1 AAAATTAATAAAATGGATATA
108794455 AATTATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (23 bp):
AAAATTAATAAAATGGATATATT
Found at i:108794483 original size:17 final size:19
Alignment explanation
Indices: 108794456--108794491 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
108794446 ATGGATATAA
108794456 ATTATATTTAAA-AAATTT
1 ATTATATTTAAAGAAATTT
108794474 ATTA-ATTTAAAGAAATTT
1 ATTATATTTAAAGAAATTT
108794492 TAAAACGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATTATATTTAAAGAAATTT
Found at i:108801587 original size:18 final size:18
Alignment explanation
Indices: 108801564--108801599 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
108801554 TTTTACTTTG
108801564 GCCCATTTAAGTTTATAA
1 GCCCATTTAAGTTTATAA
108801582 GCCCATTTAAGTTTATAA
1 GCCCATTTAAGTTTATAA
108801600 ATCAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (18 bp):
GCCCATTTAAGTTTATAA
Found at i:108803192 original size:15 final size:16
Alignment explanation
Indices: 108803169--108803200 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
108803159 TCAATAAAGG
108803169 TTTGCTTTTTTTTTGT
1 TTTGCTTTTTTTTTGT
108803185 TTTG-TTTTTTTTTGT
1 TTTGCTTTTTTTTTGT
108803200 T
1 T
108803201 AATATAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.84
Consensus pattern (16 bp):
TTTGCTTTTTTTTTGT
Found at i:108807106 original size:15 final size:15
Alignment explanation
Indices: 108807086--108807115 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
108807076 TATGTATTTT
108807086 TTTAATTACTAATTA
1 TTTAATTACTAATTA
108807101 TTTAATTACTAATTA
1 TTTAATTACTAATTA
108807116 ACCTCTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTAATTACTAATTA
Found at i:108812261 original size:70 final size:70
Alignment explanation
Indices: 108812148--108812288 Score: 264
Period size: 70 Copynumber: 2.0 Consensus size: 70
108812138 GAACCAAACC
* *
108812148 ATTTACATCTCCGATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAGCAAATCAAACAG
1 ATTTACATCTCCCATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
108812213 TATCA
66 TATCA
108812218 ATTTACATCTCCCATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
1 ATTTACATCTCCCATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
108812283 TATCA
66 TATCA
108812288 A
1 A
108812289 AAGCAACTCA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (70 bp):
ATTTACATCTCCCATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
TATCA
Found at i:108814853 original size:12 final size:13
Alignment explanation
Indices: 108814813--108814853 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
108814803 GTTATTATTT
108814813 AATAATAATAAT-
1 AATAATAATAATG
108814825 AATAATAATAAACTG
1 AATAATAAT-AA-TG
108814840 AA-AATAATAATG
1 AATAATAATAATG
108814852 AA
1 AA
108814854 GGAAGAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 13 0.50
13 4 0.15
14 7 0.27
15 2 0.08
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (13 bp):
AATAATAATAATG
Found at i:108814959 original size:17 final size:18
Alignment explanation
Indices: 108814929--108814962 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
108814919 TTGTTAATAC
*
108814929 TTTTTTTCTCAAATTTAT
1 TTTTTTTATCAAATTTAT
108814947 TTTTTTTAT-AAATTTA
1 TTTTTTTATCAAATTTA
108814963 CAAATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTTTATCAAATTTAT
Found at i:108817180 original size:9 final size:8
Alignment explanation
Indices: 108817161--108817194 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
108817151 TTGGTATCTC
108817161 ATTAAAAA
1 ATTAAAAA
108817169 ATTAATAAA
1 ATTAA-AAA
108817178 ATTAAAAAA
1 ATT-AAAAA
108817187 ATTAAAAA
1 ATTAAAAA
108817195 TAAAATTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 10 0.42
9 12 0.50
10 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
ATTAAAAA
Found at i:108818221 original size:20 final size:20
Alignment explanation
Indices: 108818169--108818221 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
108818159 CATGTGGTAA
* *
108818169 TAATTTTGTGTTTTTTTTTG
1 TAATTTTATGTTTTTGTTTG
* *
108818189 GAA-TTTAGGGTTTTTGTTTG
1 TAATTTTA-TGTTTTTGTTTG
108818209 TAATTTTATGTTT
1 TAATTTTATGTTT
108818222 GTTTTGAGAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
19 3 0.12
20 18 0.72
21 4 0.16
ACGTcount: A:0.15, C:0.00, G:0.19, T:0.66
Consensus pattern (20 bp):
TAATTTTATGTTTTTGTTTG
Found at i:108839689 original size:16 final size:17
Alignment explanation
Indices: 108839657--108839690 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
108839647 AAAGTAAGTC
*
108839657 AAACTTTGAATTGACTT
1 AAACTTAGAATTGACTT
108839674 AAACTTAGAA-TGACTT
1 AAACTTAGAATTGACTT
108839690 A
1 A
108839691 GATCAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
AAACTTAGAATTGACTT
Found at i:108859274 original size:24 final size:24
Alignment explanation
Indices: 108859212--108859274 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
108859202 TGTTATTATT
*
108859212 ATTTATTATTATTTTTATATTTAAT
1 ATTTA-TATTATTTTTATATTTAAA
*
108859237 ATTGA-ATTTATTTTTATATTTAAA
1 ATTTATA-TTATTTTTATATTTAAA
108859261 ATTTATGATT-TTTT
1 ATTTAT-ATTATTTT
108859275 CTTTTAATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 1 0.03
24 24 0.75
25 6 0.19
26 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (24 bp):
ATTTATATTATTTTTATATTTAAA
Found at i:108861992 original size:23 final size:23
Alignment explanation
Indices: 108861964--108862009 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
108861954 TAAGTCCTTG
108861964 TATTTTTT-TATATTTG-AAATT
1 TATTTTTTCTATATTTGAAAATT
*
108861985 TATTTTTTCTATTTTTGAAAATT
1 TATTTTTTCTATATTTGAAAATT
108862008 TA
1 TA
108862010 AAATTTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.36
22 7 0.32
23 7 0.32
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (23 bp):
TATTTTTTCTATATTTGAAAATT
Found at i:108864360 original size:131 final size:133
Alignment explanation
Indices: 108864125--108864364 Score: 333
Period size: 131 Copynumber: 1.8 Consensus size: 133
108864115 TCAGCATGAA
* * *
108864125 TATGTATGTATGTCCTGCATTCATGTTCGTTTGCAGATTTGAACATTAGTATGGTGATATGACCT
1 TATGTATGTATGTCATGCATCCATGTTCGTTTGCAGATTTGAACATGAGTATGGTGATATGACCT
* **
108864190 TCTAAAGATTACATGGCAATTCGCTCATTATGCAATTTTCATCATCATCATCATGATACATGAAT
66 TCTAAAGATTACATGGCAATACAATCATTATGCAATTTTCATCATCATCATCATGATACATGAAT
108864255 CTT
131 CTT
* * *
108864258 TATGTATGTATGT-ATGACATCCATGTTTG-TTGCATATTTGGACATGA-TATGGTGATATGACC
1 TATGTATGTATGTCATG-CATCCATGTTCGTTTGCAGATTTGAACATGAGTATGGTGATATGACC
* * * *
108864320 TTCTAAATATTACATGGCAATACAATCATTCTGTAGTTTTCATCA
65 TTCTAAAGATTACATGGCAATACAATCATTATGCAATTTTCATCA
108864365 GCAGCAGCAT
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
131 53 0.57
132 17 0.18
133 23 0.25
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (133 bp):
TATGTATGTATGTCATGCATCCATGTTCGTTTGCAGATTTGAACATGAGTATGGTGATATGACCT
TCTAAAGATTACATGGCAATACAATCATTATGCAATTTTCATCATCATCATCATGATACATGAAT
CTT
Found at i:108872039 original size:38 final size:38
Alignment explanation
Indices: 108871997--108872075 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
108871987 CAGCTGAAAG
*
108871997 AAAACAAAAATTTTTCGAAATTAAGTACTAATAGATAC
1 AAAACAAAAAATTTTCGAAATTAAGTACTAATAGATAC
*
108872035 AAAACAAAAAATTTTCGAAATTAGGTACTAATAGATAC
1 AAAACAAAAAATTTTCGAAATTAAGTACTAATAGATAC
108872073 AAA
1 AAA
108872076 TTTTCACATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.54, C:0.10, G:0.09, T:0.27
Consensus pattern (38 bp):
AAAACAAAAAATTTTCGAAATTAAGTACTAATAGATAC
Found at i:108872944 original size:21 final size:21
Alignment explanation
Indices: 108872900--108872940 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
108872890 GTCGAGATAG
*
108872900 ATTTTGTATTCTTAATCTTAT
1 ATTTTGTATTCTTAATCTAAT
*
108872921 ATTTTGTATTTTTAAT-TAAT
1 ATTTTGTATTCTTAATCTAAT
108872941 TATTAATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (21 bp):
ATTTTGTATTCTTAATCTAAT
Found at i:108873028 original size:18 final size:17
Alignment explanation
Indices: 108872984--108873028 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
108872974 TAATTGAGAA
108872984 AAAATAATTATT-ATTTT
1 AAAATAA-TATTAATTTT
108873001 -AAAT-ATATTAATTTAT
1 AAAATAATATTAATTT-T
108873017 AAAATAATATTA
1 AAAATAATATTA
108873029 GATAAGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 4 0.17
15 5 0.21
16 5 0.21
17 4 0.17
18 6 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATAATATTAATTTT
Found at i:108875275 original size:20 final size:19
Alignment explanation
Indices: 108875239--108875277 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
108875229 AAACGAGTTA
**
108875239 AATAAAGAAATTTAAAAAT
1 AATAAAGAAATAAAAAAAT
108875258 AATAATAGAAATAAAAAAAT
1 AATAA-AGAAATAAAAAAAT
108875278 TGAAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (19 bp):
AATAAAGAAATAAAAAAAT
Found at i:108875438 original size:53 final size:51
Alignment explanation
Indices: 108875379--108875536 Score: 163
Period size: 52 Copynumber: 3.0 Consensus size: 51
108875369 ATGAAGAAAT
*
108875379 AAAAAATATTTTTCTTATTCAATTTGAGTGCCTCCAAATAATATGGCGGCACC
1 AAAAAATAATTTT-TTATTCAATTTGAGT-CCTCCAAATAATATGGCGGCACC
* * * * *
108875432 AAAAAATAAATTTTTATTCAATTTGGGATCCTCCAAATAATGTGGTGGCATC
1 AAAAAATAATTTTTTATTCAATTTGAG-TCCTCCAAATAATATGGCGGCACC
* * * * * * *
108875484 AAAATATAATTTTTTATTTCATTTTCATTCCTTCAAATAACATGGCCGCACC
1 AAAAAATAATTTTTTA-TTCAATTTGAGTCCTCCAAATAATATGGCGGCACC
108875536 A
1 A
108875537 CAAATATTAA
Statistics
Matches: 85, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
52 66 0.78
53 19 0.22
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (51 bp):
AAAAAATAATTTTTTATTCAATTTGAGTCCTCCAAATAATATGGCGGCACC
Found at i:108876520 original size:18 final size:17
Alignment explanation
Indices: 108876476--108876520 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
108876466 TAATTGAGAA
108876476 AAAATAATTATT-ATTTT
1 AAAATAA-TATTAATTTT
108876493 -AAAT-ATATTAATTTAT
1 AAAATAATATTAATTT-T
108876509 AAAATAATATTA
1 AAAATAATATTA
108876521 GATAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 4 0.17
15 5 0.21
16 5 0.21
17 4 0.17
18 6 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATAATATTAATTTT
Found at i:108877091 original size:10 final size:10
Alignment explanation
Indices: 108877055--108877093 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
108877045 TTAAATTTTT
108877055 ATATAAAAAA
1 ATATAAAAAA
108877065 ATA-AAAATAA
1 ATATAAAA-AA
*
108877075 TTATAAAAAA
1 ATATAAAAAA
108877085 ATATAAAAA
1 ATATAAAAA
108877094 TAAGAAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 4 0.16
10 17 0.68
11 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
ATATAAAAAA
Found at i:108885016 original size:60 final size:57
Alignment explanation
Indices: 108884944--108885095 Score: 153
Period size: 60 Copynumber: 2.6 Consensus size: 57
108884934 GCAAGTTCAA
* * * * * *
108884944 GTACCAATTTGAACC-AAGAAACCAAGATCAGGTATCTAATTGGAACAAAATATACTTTAG
1 GTACCAAATTGAACCTAA-AAACCAAGATCAAGTACCTAATTCGAAAAAAACA-AC--TAG
* *
108885004 GTACCAAATTGAACCTTAAAGCCAAGATCAAGTACCTAATTCGAAAAAAACAACTAG
1 GTACCAAATTGAACCTAAAAACCAAGATCAAGTACCTAATTCGAAAAAAACAACTAG
* * * *
108885061 ATACCAAATTGAACCTTAAAGCCAAGTTCAAGTAC
1 GTACCAAATTGAACCTAAAAACCAAGATCAAGTAC
108885096 TAAAATGTAT
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
57 36 0.44
59 2 0.02
60 42 0.52
61 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (57 bp):
GTACCAAATTGAACCTAAAAACCAAGATCAAGTACCTAATTCGAAAAAAACAACTAG
Found at i:108889407 original size:20 final size:19
Alignment explanation
Indices: 108889378--108889416 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
108889368 TATTGATTAA
*
108889378 AATATTCATTAACATGTGTT
1 AATATGCATTAA-ATGTGTT
*
108889398 AATATGCATTGAATGTGTT
1 AATATGCATTAAATGTGTT
108889417 GGTAGAGCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (19 bp):
AATATGCATTAAATGTGTT
Found at i:108904229 original size:9 final size:9
Alignment explanation
Indices: 108904197--108904364 Score: 65
Period size: 9 Copynumber: 17.6 Consensus size: 9
108904187 CTTATAAATT
*
108904197 TTTTTATGA
1 TTTTTATAA
108904206 TTTTTATAAA
1 TTTTTAT-AA
*
108904216 ATTTTATAA
1 TTTTTATAA
108904225 TTTTTTATATATA
1 --TTTT-TATA-A
*
108904238 TTTTTACAA
1 TTTTTATAA
* **
108904247 TTTCTATTT
1 TTTTTATAA
*
108904256 TTTTTTTAA
1 TTTTTATAA
108904265 TTTTTAGTGAA
1 TTTTTA-T-AA
*
108904276 -CTTTA-AA
1 TTTTTATAA
108904283 TATTTTA-AA
1 T-TTTTATAA
108904292 TATAGTTTATTAA
1 T-T--TTTA-TAA
**
108904305 AGTTTAATAA
1 TTTTTA-TAA
108904315 TTTTTATAA
1 TTTTTATAA
108904324 TTTTTATAA
1 TTTTTATAA
* *
108904333 CTTTTATTGA
1 TTTTTA-TAA
*
108904343 TTTTTAT-T
1 TTTTTATAA
108904351 TTTTTATAA
1 TTTTTATAA
108904360 TTTTT
1 TTTTT
108904365 TTGCCACATG
Statistics
Matches: 119, Mismatches: 25, Indels: 30
0.68 0.14 0.17
Matches are distributed among these distances:
7 2 0.02
8 7 0.06
9 57 0.48
10 33 0.28
11 13 0.11
12 4 0.03
13 3 0.03
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:108904235 original size:22 final size:21
Alignment explanation
Indices: 108904206--108904249 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
108904196 TTTTTTATGA
*
108904206 TTTTTATAAAATTTTATAATT
1 TTTTTATAAAATTTTACAATT
* *
108904227 TTTTATATATATTTTTACAATT
1 TTTT-TATAAAATTTTACAATT
108904249 T
1 T
108904250 CTATTTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTATAAAATTTTACAATT
Found at i:108904532 original size:3 final size:3
Alignment explanation
Indices: 108904524--108904561 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
108904514 CTTGATTGCT
108904524 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
108904562 TAAGTTTGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:108904643 original size:21 final size:20
Alignment explanation
Indices: 108904603--108904643 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
108904593 CAATCTAAGT
108904603 ACCCAATTGAGTGCAAAAAA
1 ACCCAATTGAGTGCAAAAAA
108904623 ACCCAATTGAGTGCAAAAAA
1 ACCCAATTGAGTGCAAAAAA
108904643 A
1 A
108904644 TGCAGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.20, G:0.15, T:0.15
Consensus pattern (20 bp):
ACCCAATTGAGTGCAAAAAA
Found at i:108913233 original size:40 final size:39
Alignment explanation
Indices: 108913189--108913264 Score: 89
Period size: 40 Copynumber: 1.9 Consensus size: 39
108913179 TCAAGCACGT
* * *
108913189 AAGAACAAATATACATAAGTTGTCCGGGTAAAGTATGTGC
1 AAGAACAAATACACATAAGTT-ACCCGGTAAAGTATGTGC
***
108913229 AAGAATTCATACACATAAGTTACCCGGTAAAGTATG
1 AAGAACAAATACACATAAGTTACCCGGTAAAGTATG
108913265 CGTAACTGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
39 13 0.43
40 17 0.57
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (39 bp):
AAGAACAAATACACATAAGTTACCCGGTAAAGTATGTGC
Found at i:108916348 original size:3 final size:3
Alignment explanation
Indices: 108916340--108916377 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
108916330 TTCAGTTCAG
*
108916340 TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
108916378 TCTTCAGCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:108920886 original size:21 final size:21
Alignment explanation
Indices: 108920854--108920894 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
108920844 GAACATTTGG
108920854 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
108920875 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
108920895 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:108931406 original size:107 final size:108
Alignment explanation
Indices: 108931294--108931509 Score: 389
Period size: 107 Copynumber: 2.0 Consensus size: 108
108931284 TAAACAAAAA
*
108931294 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAATTTTTAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAA
*
108931359 AGTTGTATTAAAATTTTTGTTAATTACTCT-ATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
* *
108931401 ATTAGTTTAACAAAACAATGTTATGTTAAGTTGGAATAAGTTTTAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAA
108931466 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
108931509 A
1 A
108931510 CGTGTTTTTT
Statistics
Matches: 104, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
107 91 0.88
108 13 0.12
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (108 bp):
ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAA
AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
Found at i:108934868 original size:23 final size:23
Alignment explanation
Indices: 108934825--108934869 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
108934815 TTTTCTTCGA
*
108934825 TCTTCTTTAATGGCCTCTTTATG
1 TCTTCTTTAATGGCCTATTTATG
*
108934848 TCTTCTTCTAATGG-GTATTTAT
1 TCTTCTT-TAATGGCCTATTTAT
108934870 AAACTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.16, C:0.18, G:0.13, T:0.53
Consensus pattern (23 bp):
TCTTCTTTAATGGCCTATTTATG
Found at i:108936284 original size:316 final size:315
Alignment explanation
Indices: 108935703--108936326 Score: 1124
Period size: 316 Copynumber: 2.0 Consensus size: 315
108935693 CTTATGATTG
*
108935703 TTGCGTGTAAAAAAAAACACAAATAGCAAGAGAATATAATTGAACTGCCTTCGATTTTCATCTTG
1 TTGCGTGTAAAAAAAAACACAAATAGCAAGAGAATATAATTGAACTGCCTTCCATTTTCATCTTG
*
108935768 AACATCAAGCCCTAGTTTCTACAACCAAAACACAAACACCTTGTCTACAATAACATATTTTCCAA
66 AACATCAAGCCCTAGTCTCTACAACCAAAACACAAACACCTTGTCTACAATAACATATTTTCCAA
108935833 CAAACTACTAAGAAGTTTTAGAATTATAAAACTTGCACTTCCTTAAGTACCTTAACTATCATTAA
131 CAAACTACTAAGAAGTTTTAGAATTATAAAACTTGCACTTCCTTAAGTACCTTAACTATCATTAA
* *
108935898 AGCATCGAAAACATATTGTTCGAAGGAAGACGCTCTAAACATCCATGTCGCAAAAGAAATTAAAA
196 AACATCGAAAACATATTGTTCGAAGGAAGACGCTCTAAACATCCACGTCGCAAAAGAAATTAAAA
*
108935963 TAAACAAAGATGTTAGCTTTTAGTATTATACCGTTTGATTTGAAATGTGTGTTTT
261 TAAACAAAGATGTTAGCTTTTAGTATTATACCATTTGATTTGAAATGTGTGTTTT
* *
108936018 TTGCGTGTAAAAAAAACCCACAAATAGCAAGAGAATATAATTGAACTGCCTTCCCTTTTCATCTT
1 TTGCGTGTAAAAAAAA-ACACAAATAGCAAGAGAATATAATTGAACTGCCTTCCATTTTCATCTT
* *
108936083 GAACATCAAGCCCTAGTCTCTACAACCAACACACAAACACCTTGTTTACAATAACATATTTTCCA
65 GAACATCAAGCCCTAGTCTCTACAACCAAAACACAAACACCTTGTCTACAATAACATATTTTCCA
108936148 ACAAACTACTAAGAAGTTTTAGAATTATAAAACTTGCACTTCCTTAAGTACCTTAACTATCATTA
130 ACAAACTACTAAGAAGTTTTAGAATTATAAAACTTGCACTTCCTTAAGTACCTTAACTATCATTA
* *
108936213 AAACATTGAAAACATATTGTTCGATA-GAAGACGCTCTAAACATCTACGTCGCAAAAGAAATTAA
195 AAACATCGAAAACATATTGTTCGA-AGGAAGACGCTCTAAACATCCACGTCGCAAAAGAAATTAA
108936277 AATAAACAAAGATGTTAGCTTTTAGTATTATACCATTTGATTTGAAATGT
259 AATAAACAAAGATGTTAGCTTTTAGTATTATACCATTTGATTTGAAATGT
108936327 TTAAAAATAT
Statistics
Matches: 296, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
315 16 0.05
316 279 0.94
317 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (315 bp):
TTGCGTGTAAAAAAAAACACAAATAGCAAGAGAATATAATTGAACTGCCTTCCATTTTCATCTTG
AACATCAAGCCCTAGTCTCTACAACCAAAACACAAACACCTTGTCTACAATAACATATTTTCCAA
CAAACTACTAAGAAGTTTTAGAATTATAAAACTTGCACTTCCTTAAGTACCTTAACTATCATTAA
AACATCGAAAACATATTGTTCGAAGGAAGACGCTCTAAACATCCACGTCGCAAAAGAAATTAAAA
TAAACAAAGATGTTAGCTTTTAGTATTATACCATTTGATTTGAAATGTGTGTTTT
Found at i:108940969 original size:60 final size:58
Alignment explanation
Indices: 108940843--108940954 Score: 163
Period size: 60 Copynumber: 1.9 Consensus size: 58
108940833 CTAGTAGTCA
* * *
108940843 CTCAATTATTATTAAATTTCTTTTTTGATTGTCTAACTATAAAAAGTTACAAAATGAT
1 CTCAACTATTAGTAAATTTCTTTTTTGATTGTCCAACTATAAAAAGTTACAAAATGAT
108940901 CATCCAACTATTAGTAAATTTCTTTTTTG-TTGATCCAACTATAAAAAGTTACAA
1 C-T-CAACTATTAGTAAATTTCTTTTTTGATTG-TCCAACTATAAAAAGTTACAA
108940955 GTTTGTTGCT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
58 1 0.02
59 4 0.08
60 43 0.90
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (58 bp):
CTCAACTATTAGTAAATTTCTTTTTTGATTGTCCAACTATAAAAAGTTACAAAATGAT
Found at i:108941266 original size:19 final size:19
Alignment explanation
Indices: 108941230--108941274 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
108941220 AATGCCCAAA
*
108941230 AATCTTATGTAATAATTTT
1 AATCTTATATAATAATTTT
* *
108941249 AATCTTATATCATTATTTT
1 AATCTTATATAATAATTTT
*
108941268 AAACTTA
1 AATCTTA
108941275 ACCCCTAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (19 bp):
AATCTTATATAATAATTTT
Found at i:108941460 original size:23 final size:22
Alignment explanation
Indices: 108941431--108941495 Score: 76
Period size: 23 Copynumber: 2.9 Consensus size: 22
108941421 ATAAACTATT
* *
108941431 AATATTCGTCCACTAATGCATAA
1 AATATTCCTCCACTAATACA-AA
* *
108941454 TATATTCCCCCACTAATACAAA
1 AATATTCCTCCACTAATACAAA
108941476 AACTATTCCTCCACTAATAC
1 AA-TATTCCTCCACTAATAC
108941496 TTGCCGATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 3 0.09
23 32 0.91
ACGTcount: A:0.38, C:0.29, G:0.03, T:0.29
Consensus pattern (22 bp):
AATATTCCTCCACTAATACAAA
Found at i:108960284 original size:43 final size:43
Alignment explanation
Indices: 108960223--108960309 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
108960213 ACCAACCTTT
108960223 ACTTCTTAATATTCAAGTCACATTAGACTCCAATTAAATTTCA
1 ACTTCTTAATATTCAAGTCACATTAGACTCCAATTAAATTTCA
108960266 ACTTCTTAATATTCAAGTCACATTAGACTCCAATTAAATTTCA
1 ACTTCTTAATATTCAAGTCACATTAGACTCCAATTAAATTTCA
108960309 A
1 A
108960310 ATCAAGTTAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (43 bp):
ACTTCTTAATATTCAAGTCACATTAGACTCCAATTAAATTTCA
Found at i:108963926 original size:22 final size:22
Alignment explanation
Indices: 108963898--108963950 Score: 90
Period size: 22 Copynumber: 2.4 Consensus size: 22
108963888 ATATCTCCAT
108963898 TTCTATTCATTCGAATTTACAA
1 TTCTATTCATTCGAATTTACAA
108963920 TTCTATTCATTCGAATTTACAA
1 TTCTATTCATTCGAATTTACAA
108963942 -TCGTATTCA
1 TTC-TATTCA
108963951 AACATGTCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (22 bp):
TTCTATTCATTCGAATTTACAA
Found at i:108970950 original size:30 final size:30
Alignment explanation
Indices: 108970892--108970970 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 30
108970882 TATGTTTGAT
** *
108970892 AAATTTT-GAGAGATTTTGGGAGGTTTAATTA
1 AAATTTTAGAGA-ATTTAAGGA-GTTTAATGA
108970923 AAATTTTTAGA-AATTTAAGGAGTTTAATGA
1 AAA-TTTTAGAGAATTTAAGGAGTTTAATGA
*
108970953 GAATTTTAGAGAATTTAA
1 AAATTTTAGAGAATTTAA
108970971 TTAACATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
29 7 0.17
30 17 0.41
31 10 0.24
32 5 0.12
33 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (30 bp):
AAATTTTAGAGAATTTAAGGAGTTTAATGA
Found at i:108980828 original size:29 final size:29
Alignment explanation
Indices: 108980795--108980852 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
108980785 ATCTTTTTAT
108980795 TAAAAATAGACAAATTAAGATCAAAGTAC
1 TAAAAATAGACAAATTAAGATCAAAGTAC
*
108980824 TAAAAATAGACAAATTAAGTTCAAAGTAC
1 TAAAAATAGACAAATTAAGATCAAAGTAC
108980853 AAATTATCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.22
Consensus pattern (29 bp):
TAAAAATAGACAAATTAAGATCAAAGTAC
Found at i:108986144 original size:58 final size:59
Alignment explanation
Indices: 108985973--108986145 Score: 163
Period size: 58 Copynumber: 3.0 Consensus size: 59
108985963 TTTTTAATGA
* * * * * * *
108985973 TTAACTCGGACAAAAAAAAGATTAGACCTCAATCT-AGGAAATTTACCAAGTTTAACGC
1 TTAACTTGGACAAAAAAAAGATTAGACCTCAATGTGAGAAAAGTTACTAAGTTCAAAGC
* * * ** * * *
108986031 CTAATTTGGACAAAAAAAAGTTTAGGTCTCAATGTGAGAATAGTT-GTCCAGTTCAAAGC
1 TTAACTTGGACAAAAAAAAGATTAGACCTCAATGTGAGAAAAGTTACT-AAGTTCAAAGC
* *
108986090 TTAACTTGGACAAAAAAAA-ATTAGACCCCAATGTGAGAAAAGTTACTAAATTCAAA
1 TTAACTTGGACAAAAAAAAGATTAGACCTCAATGTGAGAAAAGTTACTAAGTTCAAA
108986146 CCTCAAAATG
Statistics
Matches: 87, Mismatches: 25, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
58 55 0.63
59 32 0.37
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (59 bp):
TTAACTTGGACAAAAAAAAGATTAGACCTCAATGTGAGAAAAGTTACTAAGTTCAAAGC
Found at i:108995612 original size:15 final size:16
Alignment explanation
Indices: 108995592--108995621 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
108995582 TTTAACAATA
108995592 AAATTAA-AACAAATG
1 AAATTAACAACAAATG
108995607 AAATTAACAACAAAT
1 AAATTAACAACAAAT
108995622 ATGGTGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.10, G:0.03, T:0.20
Consensus pattern (16 bp):
AAATTAACAACAAATG
Found at i:109000339 original size:16 final size:17
Alignment explanation
Indices: 109000318--109000364 Score: 69
Period size: 16 Copynumber: 2.8 Consensus size: 17
109000308 CTTAAAAAAG
109000318 TTTAATTTTT-TAATTT
1 TTTAATTTTTATAATTT
109000334 TTTAATTTTTATAATTT
1 TTTAATTTTTATAATTT
*
109000351 TTTGAATTTATATA
1 TTT-AATTTTTATA
109000365 TATATATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 10 0.36
17 9 0.32
18 9 0.32
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTAATTTTTATAATTT
Found at i:109000342 original size:7 final size:8
Alignment explanation
Indices: 109000318--109000359 Score: 66
Period size: 8 Copynumber: 5.0 Consensus size: 8
109000308 CTTAAAAAAG
109000318 TTTAATTT
1 TTTAATTT
109000326 TTTAATTT
1 TTTAATTT
109000334 TTTAATTT
1 TTTAATTT
109000342 TTATAATTT
1 TT-TAATTT
109000351 TTTGAATTT
1 TTT-AATTT
109000360 ATATATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 19 0.59
9 13 0.41
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (8 bp):
TTTAATTT
Found at i:109000343 original size:9 final size:9
Alignment explanation
Indices: 109000318--109000359 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
109000308 CTTAAAAAAG
109000318 TTTAA-TTT
1 TTTAATTTT
109000326 TTTAA-TTT
1 TTTAATTTT
109000334 TTTAATTTT
1 TTTAATTTT
*
109000343 TATAATTTT
1 TTTAATTTT
*
109000352 TTGAATTT
1 TTTAATTT
109000360 ATATATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
8 13 0.43
9 17 0.57
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (9 bp):
TTTAATTTT
Found at i:109002407 original size:12 final size:12
Alignment explanation
Indices: 109002387--109002417 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
109002377 GCAAGAGAGC
*
109002387 TATGCATGCATG
1 TATGTATGCATG
109002399 TATGTATGCATG
1 TATGTATGCATG
109002411 TATGTAT
1 TATGTAT
109002418 ATACCTCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.42
Consensus pattern (12 bp):
TATGTATGCATG
Found at i:109002503 original size:3 final size:3
Alignment explanation
Indices: 109002495--109002533 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
109002485 TATTGGATTG
* * *
109002495 TCA TCA TCA TCA TCA TCA ACA CCA TCA TCA TCA TGA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
109002534 GCTAATGGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.36, C:0.33, G:0.03, T:0.28
Consensus pattern (3 bp):
TCA
Found at i:109003221 original size:21 final size:21
Alignment explanation
Indices: 109003195--109003243 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
109003185 ATATGAGTAT
109003195 GATTATATGCATGATAGCATC
1 GATTATATGCATGATAGCATC
109003216 GATTATATGCATGATAGCATC
1 GATTATATGCATGATAGCATC
*
109003237 TATTATA
1 GATTATA
109003244 CCAAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (21 bp):
GATTATATGCATGATAGCATC
Found at i:109011032 original size:18 final size:18
Alignment explanation
Indices: 109011009--109011083 Score: 132
Period size: 18 Copynumber: 4.2 Consensus size: 18
109010999 CCCAACTACT
*
109011009 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
109011027 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
109011045 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
109011063 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
109011081 GTA
1 GTA
109011084 AACGGTCGTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 54 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:109012372 original size:14 final size:14
Alignment explanation
Indices: 109012355--109012381 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
109012345 TTTAAAAAAT
109012355 AAAAAATTAAATTA
1 AAAAAATTAAATTA
109012369 AAAAAATTAAATT
1 AAAAAATTAAATT
109012382 TTAAATTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAAAATTAAATTA
Found at i:109014026 original size:10 final size:10
Alignment explanation
Indices: 109014007--109014040 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
109013997 TTTAAAATAT
109014007 AATACACTAA
1 AATACACTAA
*
109014017 AATGCACTAA
1 AATACACTAA
*
109014027 AAAACACTAA
1 AATACACTAA
109014037 AATA
1 AATA
109014041 AAGTTTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.62, C:0.18, G:0.03, T:0.18
Consensus pattern (10 bp):
AATACACTAA
Found at i:109018155 original size:21 final size:21
Alignment explanation
Indices: 109018129--109018169 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
109018119 TTAAAACAAT
*
109018129 ATAGTTTTGTCTTTTAACTTA
1 ATAGTTTTGACTTTTAACTTA
109018150 ATAGTTTTGACTTTTAACTT
1 ATAGTTTTGACTTTTAACTT
109018170 TAGAAAAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.56
Consensus pattern (21 bp):
ATAGTTTTGACTTTTAACTTA
Found at i:109031236 original size:81 final size:81
Alignment explanation
Indices: 109031081--109031240 Score: 196
Period size: 81 Copynumber: 2.0 Consensus size: 81
109031071 ATGAAACCTT
* * * * * * *
109031081 ACAAGAAGGTCATCAAGAGGAAGCTCAAGCGGAAGCTGATTCAAGTGCAATTGTAGCTTACGATG
1 ACAAGAAGGTCATCAAGAGGAAGCTCAAGCGGAAGCTGATACAAGTGAAATTCTACCATACAACG
*
109031146 GAGCCCAAATGGTTCA
66 GAACCCAAATGGTTCA
* * *
109031162 ACAAGAAGGTCATCAAGTGGAAAG-TGAAGCTGAAGCTGATACAAGTGAAATTCTACCATACAAC
1 ACAAGAAGGTCATCAAGAGG-AAGCTCAAGCGGAAGCTGATACAAGTGAAATTCTACCATACAAC
*
109031226 GGAACTCAAATGGTT
65 GGAACCCAAATGGTT
109031241 GAAAATGGGA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 63 0.95
82 3 0.05
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (81 bp):
ACAAGAAGGTCATCAAGAGGAAGCTCAAGCGGAAGCTGATACAAGTGAAATTCTACCATACAACG
GAACCCAAATGGTTCA
Found at i:109031309 original size:60 final size:60
Alignment explanation
Indices: 109031232--109031398 Score: 316
Period size: 60 Copynumber: 2.8 Consensus size: 60
109031222 CAACGGAACT
*
109031232 CAAATGGTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
*
109031292 CAAATGCTTGAACATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
109031352 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCAT
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCAT
109031399 TGATTATGGT
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 104 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (60 bp):
CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
Found at i:109035099 original size:21 final size:21
Alignment explanation
Indices: 109035073--109035113 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
109035063 ATCTGCTCAA
* *
109035073 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
109035094 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
109035114 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:109035438 original size:24 final size:24
Alignment explanation
Indices: 109035410--109035458 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
109035400 GCAAACGATT
109035410 AACAAGATGGCCAGCGTATGTCAC
1 AACAAGATGGCCAGCGTATGTCAC
109035434 AACAAGATGGCCAGCGTATGTCAC
1 AACAAGATGGCCAGCGTATGTCAC
109035458 A
1 A
109035459 GCCTCAGCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (24 bp):
AACAAGATGGCCAGCGTATGTCAC
Found at i:109041934 original size:24 final size:24
Alignment explanation
Indices: 109041907--109041958 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
109041897 TTTCTAAAAG
* *
109041907 ATTTAGCATTTATGAGTATAATAT
1 ATTTAACATTTATGAGCATAATAT
*
109041931 ATTTAACATTTATTAGCATAATAT
1 ATTTAACATTTATGAGCATAATAT
109041955 ATTT
1 ATTT
109041959 GACCTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (24 bp):
ATTTAACATTTATGAGCATAATAT
Found at i:109041969 original size:24 final size:24
Alignment explanation
Indices: 109041924--109041970 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
109041914 ATTTATGAGT
*
109041924 ATAATATATTTAACATTTATTAGC
1 ATAATATATTTAACATTGATTAGC
* *
109041948 ATAATATATTTGACCTTGATTAG
1 ATAATATATTTAACATTGATTAG
109041971 AATTAGGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (24 bp):
ATAATATATTTAACATTGATTAGC
Found at i:109042413 original size:19 final size:19
Alignment explanation
Indices: 109042389--109042486 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
109042379 AATCTTTAAG
109042389 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
109042408 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
109042427 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
109042444 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
109042463 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
109042484 GAT
1 GAT
109042487 CTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:109042435 original size:36 final size:37
Alignment explanation
Indices: 109042389--109042486 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
109042379 AATCTTTAAG
109042389 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATCTTAGATAT
109042427 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
109042463 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
109042487 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:109048060 original size:24 final size:24
Alignment explanation
Indices: 109048020--109048065 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
109048010 ATTTAGAAGT
*
109048020 ATAATATATTTAGCCTTTATTAGC
1 ATAATATATTTAGCCTTGATTAGC
109048044 ATAATATATTT-GACCTTGATTA
1 ATAATATATTTAG-CCTTGATTA
109048066 AAATTAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.46
Consensus pattern (24 bp):
ATAATATATTTAGCCTTGATTAGC
Found at i:109049563 original size:21 final size:23
Alignment explanation
Indices: 109049539--109049580 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
109049529 GGTACCCAGT
109049539 TTTTCTTTTC-TT-AGCTTTTTC
1 TTTTCTTTTCTTTAAGCTTTTTC
*
109049560 TTTTGTTTTCTTTAAGCTTTT
1 TTTTCTTTTCTTTAAGCTTTT
109049581 CCATGATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 2 0.11
23 7 0.39
ACGTcount: A:0.07, C:0.14, G:0.07, T:0.71
Consensus pattern (23 bp):
TTTTCTTTTCTTTAAGCTTTTTC
Found at i:109050222 original size:81 final size:81
Alignment explanation
Indices: 109050067--109050226 Score: 205
Period size: 81 Copynumber: 2.0 Consensus size: 81
109050057 ATGAAACCTT
* * * * * *
109050067 ACAAGAAGGTCATCAAGAGGAAGCTCAAGCGGAAGCTGATACAAGTGCAATTGTAGCTTACGATG
1 ACAAGAAGGTCATCAAGAGGAAGCTCAAGCGGAAGCTGATACAAGTGAAATTCTACCATACAACG
*
109050132 GAGCCCAAATGGTTCA
66 GAACCCAAATGGTTCA
* * *
109050148 ACAAGAAGGTCATCAAGTGGAAAG-TGAAGCTGAAGCTGATACAAGTGAAATTCTACCATACAAC
1 ACAAGAAGGTCATCAAGAGG-AAGCTCAAGCGGAAGCTGATACAAGTGAAATTCTACCATACAAC
*
109050212 GGAACTCAAATGGTT
65 GGAACCCAAATGGTT
109050227 GAAAATGGGA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 64 0.96
82 3 0.04
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.19
Consensus pattern (81 bp):
ACAAGAAGGTCATCAAGAGGAAGCTCAAGCGGAAGCTGATACAAGTGAAATTCTACCATACAACG
GAACCCAAATGGTTCA
Found at i:109050295 original size:60 final size:60
Alignment explanation
Indices: 109050218--109050384 Score: 316
Period size: 60 Copynumber: 2.8 Consensus size: 60
109050208 CAACGGAACT
*
109050218 CAAATGGTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
*
109050278 CAAATGCTTGAACATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
109050338 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCAT
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCAT
109050385 TGATTATGGT
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 104 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (60 bp):
CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
Found at i:109054939 original size:24 final size:24
Alignment explanation
Indices: 109054894--109054940 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
109054884 GTTTATGAGT
*
109054894 ATAATATATTTAGCATTTATTAGC
1 ATAATATATTTAGCATTGATTAGC
109054918 ATAATATATTT-GACATTGATTAG
1 ATAATATATTTAG-CATTGATTAG
109054941 AATTAGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (24 bp):
ATAATATATTTAGCATTGATTAGC
Found at i:109059245 original size:24 final size:24
Alignment explanation
Indices: 109059211--109059262 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
109059201 TTTCTAGAAG
* *
109059211 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
*
109059235 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
109059259 ATTT
1 ATTT
109059263 GACCTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:109064044 original size:21 final size:21
Alignment explanation
Indices: 109064018--109064058 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
109064008 ATCTGCTCAA
* *
109064018 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
109064039 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
109064059 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:109067023 original size:60 final size:60
Alignment explanation
Indices: 109066946--109067109 Score: 283
Period size: 60 Copynumber: 2.7 Consensus size: 60
109066936 CAACGGAACT
* *
109066946 CAAATGGTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGTTCC
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGCTCC
* *
109067006 CAAATGCTTGAACATGGGATTGCATTTGCACCTCTTTATGAACCCATAAGTACTAGCTCC
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGCTCC
*
109067066 CAAATGCTTGAAAATGAGATTGCATTTGCACCTCTTTATGAACC
1 CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACC
109067110 TATTGATTAT
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 98 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (60 bp):
CAAATGCTTGAAAATGGGATTGCATTTGCACCTCTTTATGAACCCATAAATACTAGCTCC
Found at i:109072636 original size:11 final size:11
Alignment explanation
Indices: 109072620--109072662 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
109072610 TAGAATATAC
109072620 CCCATACCTTG
1 CCCATACCTTG
*
109072631 CCCATACCTTT
1 CCCATACCTTG
*
109072642 CCCATACC-TA
1 CCCATACCTTG
109072652 CCCATACCTTG
1 CCCATACCTTG
109072663 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:109072657 original size:21 final size:22
Alignment explanation
Indices: 109072620--109072661 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
109072610 TAGAATATAC
*
109072620 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
109072642 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
109072662 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:109073217 original size:18 final size:18
Alignment explanation
Indices: 109073194--109073304 Score: 195
Period size: 18 Copynumber: 6.2 Consensus size: 18
109073184 TACGACCGTT
109073194 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
109073212 TACGGTACAATTCACGTA
1 TACGGTACTATTCACGTA
*
109073230 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
109073248 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
109073266 TACGGAACTATTCACGTA
1 TACGGTACTATTCACGTA
109073284 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
109073302 TAC
1 TAC
109073305 AGTAGTTGGG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 87 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:109077399 original size:10 final size:11
Alignment explanation
Indices: 109077351--109077403 Score: 81
Period size: 11 Copynumber: 4.9 Consensus size: 11
109077341 TAGAATATAC
*
109077351 CCCATACCTTG
1 CCCATACCTTT
109077362 CCCATACCTTT
1 CCCATACCTTT
109077373 CCCATACCTTT
1 CCCATACCTTT
*
109077384 CCCATACC-TA
1 CCCATACCTTT
109077394 CCCATACCTT
1 CCCATACCTT
109077404 GGAAAGGTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
10 9 0.23
11 30 0.77
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (11 bp):
CCCATACCTTT
Found at i:109087053 original size:19 final size:19
Alignment explanation
Indices: 109087025--109087160 Score: 213
Period size: 19 Copynumber: 7.2 Consensus size: 19
109087015 AATCTTTAAG
109087025 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
109087044 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
109087063 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
109087082 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
109087099 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
109087118 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
109087137 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
109087158 GAT
1 GAT
109087161 CTTGTAATCT
Statistics
Matches: 110, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
17 17 0.15
19 84 0.76
21 9 0.08
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:109087090 original size:55 final size:56
Alignment explanation
Indices: 109087025--109087160 Score: 202
Period size: 55 Copynumber: 2.4 Consensus size: 56
109087015 AATCTTTAAG
*
109087025 GATATGCAATCTTAGATATGATATACAATCTTAGATATGATATACAATCTTAGATAT
1 GATA-GCAATCTTAGATATGATATACAATCTTAGATATGATATACAATATTAGATAT
* *
109087082 GATA-CAATCTTAGATATGATATGCAATCTTAGATATGATATGCAATATTAGATAT
1 GATAGCAATCTTAGATATGATATACAATCTTAGATATGATATACAATATTAGATAT
109087137 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
109087161 CTTGTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
55 52 0.72
57 11 0.15
59 9 0.12
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (56 bp):
GATAGCAATCTTAGATATGATATACAATCTTAGATATGATATACAATATTAGATAT
Found at i:109087748 original size:112 final size:113
Alignment explanation
Indices: 109087601--109087834 Score: 282
Period size: 113 Copynumber: 2.1 Consensus size: 113
109087591 GATTCACAAA
*
109087601 AAGCGCCGCAAAAAAATAAGGCCAACGACGTCG-TTT-ATTGAGTTTTTGGGCCATTAGCGGCGT
1 AAGCGCCGCAAAAAAATAAGGCCAACGACGCCGTTTTCATTG-GTTTTTGGGCCATTAGCGGCGT
*
109087664 TTT-TACAAAAGCGCC-CTAATGCTCCTG-TCTTTAGCGGCG-TTTTCTGAG
65 TTTCT-CAAAAGCGCCGCTAATGAT-CTGTTCTTTAGCGGCGTTTTTCTG-G
* * * * *
109087712 AAGCGCCGCAAAAAACCTAAGGGCAACGACGCCGTTTTCTTTGTTTTTTGGGCCTTTAGCGGCGT
1 AAGCGCCGCAAAAAA-ATAAGGCCAACGACGCCGTTTTCATTGGTTTTTGGGCCATTAGCGGCGT
* * * *
109087777 TTTCTTAAAAGCGCCGCTAATGATTTGTTTTTTAGCGGCGTTTTTCTGT
65 TTTCTCAAAAGCGCCGCTAATGATCTGTTCTTTAGCGGCGTTTTTCTGG
109087826 AAGCGCCGC
1 AAGCGCCGC
109087835 TAATAGTAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
111 15 0.14
112 15 0.14
113 37 0.35
114 31 0.30
115 7 0.07
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (113 bp):
AAGCGCCGCAAAAAAATAAGGCCAACGACGCCGTTTTCATTGGTTTTTGGGCCATTAGCGGCGTT
TTCTCAAAAGCGCCGCTAATGATCTGTTCTTTAGCGGCGTTTTTCTGG
Found at i:109088212 original size:18 final size:21
Alignment explanation
Indices: 109088166--109088214 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
109088156 TAGTTCGACT
109088166 AAATTAATATATAAATCAAAC
1 AAATTAATATATAAATCAAAC
* *
109088187 AAAGTAATATA-AAA-C-ACC
1 AAATTAATATATAAATCAAAC
109088205 AAATTAATAT
1 AAATTAATAT
109088215 CGTGATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 11 0.44
19 1 0.04
20 3 0.12
21 10 0.40
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATTAATATATAAATCAAAC
Found at i:109088498 original size:15 final size:16
Alignment explanation
Indices: 109088480--109088510 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
109088470 GCTTTAAGAC
109088480 TTAGGGTT-TAGGGGT
1 TTAGGGTTATAGGGGT
109088495 TTAGGGTTATAGGGGT
1 TTAGGGTTATAGGGGT
109088511 CGTGTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (16 bp):
TTAGGGTTATAGGGGT
Found at i:109088876 original size:14 final size:14
Alignment explanation
Indices: 109088801--109088878 Score: 66
Period size: 14 Copynumber: 5.6 Consensus size: 14
109088791 TCGGATGTAA
*
109088801 GGGTTTGTGGTTTG
1 GGGTTTGGGGTTTG
109088815 GGGTTTGGGGTTTG
1 GGGTTTGGGGTTTG
* * *
109088829 GGATTTGGGTTTTT
1 GGGTTTGGGGTTTG
* * * *
109088843 GAGTTTAGAGTTTA
1 GGGTTTGGGGTTTG
**
109088857 ATGTTTGGGGTTTG
1 GGGTTTGGGGTTTG
109088871 GGGTTTGG
1 GGGTTTGG
109088879 AAATTTAAGG
Statistics
Matches: 47, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
14 47 1.00
ACGTcount: A:0.08, C:0.00, G:0.45, T:0.47
Consensus pattern (14 bp):
GGGTTTGGGGTTTG
Found at i:109089700 original size:230 final size:231
Alignment explanation
Indices: 109089296--109089769 Score: 761
Period size: 230 Copynumber: 2.1 Consensus size: 231
109089286 AAGAAAACGG
*
109089296 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTATACAAAACGCCGCAACTATGTTTTCTTTGTTA
1 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGACAAAACGCCGCAACTATGTTTTCTTTGTTA
* * * ** *
109089361 CGGGAACGGCGTCGTTTTCCATTGTTATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
66 CAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
*
109089426 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCATTTATATATA
131 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATA
* * **
109089491 AACGTCGCAAACTCGAAATGGTGTTACGAAAAATGA
196 AACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
* *
109089527 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGATAAAACGCCGCAAGTATGTTTTCTTTGTTA
1 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGACAAAACGCCGCAACTATGTTTTCTTTGTTA
*
109089592 CAGAAACGGCATCGTTTT-CAAGGATATTTGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
66 CAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
* * *
109089656 AAAGATTACAGGAGTTTGCTTTAAACGACTGCGTTTGACCTTATATTTAGTGGCGCTTATATATA
131 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATA
*
109089721 AACGCCGCAAAATCGAAATGGTGTTACGGAAAACAA
196 AACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
*
109089757 CGCCGTTTACTTA
1 CGCCGTTTTCTTA
109089770 GTTGGTTTTA
Statistics
Matches: 223, Mismatches: 20, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
230 146 0.65
231 77 0.35
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (231 bp):
CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGACAAAACGCCGCAACTATGTTTTCTTTGTTA
CAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATA
AACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
Found at i:109089839 original size:230 final size:229
Alignment explanation
Indices: 109089296--109089840 Score: 644
Period size: 230 Copynumber: 2.4 Consensus size: 229
109089286 AAGAAAACGG
* * * * ** * ***
109089296 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTATACAAAACGCCGCAACTATGTTTTCTTTGTTA
1 CGCCGTTTACTTATTACATTTAGTGGCCTTTTA-ATAAAACGCCGCAAATATGCATTATAACTTA
* * * ** *
109089361 CGGGAACGGCGTCGTTTTCCATTGTTATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
65 CAGAAACGGCATCGTTTT-CAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
*
109089426 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCATTTATATATA
129 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATA
* * **
109089491 AACGTCGCAAACTCGAAATGGTGTTACGAAAAATGA
194 AACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
* * * ** * ***
109089527 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGATAAAACGCCGCAAGTATGTTTTCTTTGTTA
1 CGCCGTTTACTTATTACATTTAGTGGCCTTTTA-ATAAAACGCCGCAAATATGCATTATAACTTA
*
109089592 CAGAAACGGCATCGTTTTCAAGGATATTTGTGGCGTTACACCCAAAACGCCGCAAATATATTTTA
65 CAGAAACGGCATCGTTTTCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTTA
* * *
109089657 AAGATTACAGGAGTTTGCTTTAAACGACTGCGTTTGACCTTATATTTAGTGGCGCTTATATATAA
130 AAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATAA
*
109089722 ACGCCGCAAAATCGAAATGGTGTTACGGAAAACAA
195 ACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
*** * *
109089757 CGCCGTTTACTTAGTTGGTTTTAGTGGCACTTTT-ATTAAACGCCGCAAATTTGCATTATAACTT
1 CGCCGTTTACTTA-TTACATTTAGTGGC-CTTTTAATAAAACGCCGCAAATATGCATTATAACTT
* *
109089821 A-AGGAAACTGCGTCGTTTTC
64 ACA-GAAACGGCATCGTTTTC
109089841 CATTGTTAGT
Statistics
Matches: 276, Mismatches: 35, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
229 1 0.00
230 183 0.66
231 88 0.32
232 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34
Consensus pattern (229 bp):
CGCCGTTTACTTATTACATTTAGTGGCCTTTTAATAAAACGCCGCAAATATGCATTATAACTTAC
AGAAACGGCATCGTTTTCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTTAA
AGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATAAA
CGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
Found at i:109090156 original size:19 final size:19
Alignment explanation
Indices: 109090134--109090177 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
109090124 CAGACATCTC
*
109090134 CCCCAAATCCCTAAAATTT
1 CCCCAAATCCCTAAAAGTT
* *
109090153 CCCCTAATCCCTAACAGTT
1 CCCCAAATCCCTAAAAGTT
109090172 CCCCAA
1 CCCCAA
109090178 CGTAGTCCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.43, G:0.02, T:0.23
Consensus pattern (19 bp):
CCCCAAATCCCTAAAAGTT
Done.