Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 339 of 344
Found at i:110009165 original size:18 final size:18
Alignment explanation
Indices: 110009142--110009180 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
110009132 CAAAAAACCT
110009142 AAAGCGCCTGAAGCGAAA
1 AAAGCGCCTGAAGCGAAA
*
110009160 AAAGCGCCTGAAGTGAAA
1 AAAGCGCCTGAAGCGAAA
110009178 AAA
1 AAA
110009181 AAAAAGCTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.18, G:0.26, T:0.08
Consensus pattern (18 bp):
AAAGCGCCTGAAGCGAAA
Found at i:110009322 original size:17 final size:16
Alignment explanation
Indices: 110009277--110009329 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
110009267 TTTGGTTCGC
* *
110009277 TGTATTGGACTAGAAG
1 TGTATTGGATTAGAGG
*
110009293 TATATTGGATTAGAGG
1 TGTATTGGATTAGAGG
110009309 TGTATTGAGATTAGAGG
1 TGTATTG-GATTAGAGG
110009326 TGTA
1 TGTA
110009330 ATAGCTAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 19 0.59
17 13 0.41
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:110009578 original size:15 final size:15
Alignment explanation
Indices: 110009545--110009595 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
110009535 TTAATCATAT
110009545 TTAAATATAATTATAA
1 TTAAATAT-ATTATAA
*
110009561 TTAAATATATTTTAA
1 TTAAATATATTATAA
110009576 TTAAA-ATA-TATAA
1 TTAAATATATTATAA
*
110009589 TTTAATA
1 TTAAATA
110009596 AAATTCTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 8 0.26
14 4 0.13
15 11 0.35
16 8 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAAATATATTATAA
Found at i:110009586 original size:18 final size:17
Alignment explanation
Indices: 110009549--110009599 Score: 61
Period size: 16 Copynumber: 3.0 Consensus size: 17
110009539 TCATATTTAA
*
110009549 ATATAATTATAATTAAAT
1 ATATAATT-TAATAAAAT
110009567 ATAT--TTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
110009583 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
110009600 TCTTATAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 3 0.10
16 11 0.38
17 6 0.21
18 9 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:110009736 original size:156 final size:156
Alignment explanation
Indices: 110009452--110009779 Score: 584
Period size: 156 Copynumber: 2.1 Consensus size: 156
110009442 TAGAATACCC
* *
110009452 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
* *
110009517 TTATCAATAATAAATATTTTAATCATATTTAAATATAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATATTTTAATCATATTTAAACATAATTATAACTAAATATATTTTAATTAAAA
110009582 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
110009608 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
* *
110009673 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTACTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATATTTTAATCATATTTAAACATAATTATAACTAAATATATTTTAATTAAAA
*
110009738 TATATAATTTAATAAAATTTTTATAA
131 TATATAATTTAATAAAATTCTTATAA
*
110009764 TTAGCAGAAATTTGTT
1 TTAGCAGAAAATTGTT
110009780 ATTGTTATTT
Statistics
Matches: 164, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
156 164 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAATAATAAATATTTTAATCATATTTAAACATAATTATAACTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:110009742 original size:18 final size:17
Alignment explanation
Indices: 110009721--110009755 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
110009711 TTATTACTAA
*
110009721 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
110009739 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
110009756 TTTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:110009744 original size:137 final size:137
Alignment explanation
Indices: 110009638--110009893 Score: 386
Period size: 137 Copynumber: 1.9 Consensus size: 137
110009628 TAAATGATTA
* * *
110009638 TTGTTAATGTTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
* * * *
110009703 AAACATAATTATTACTAAATATATTTTAATTAAAATATATAATTTAATAAAATTTTTATAATTAG
66 AAACATAATTATTACTAAATACATTATAATTAAAATATATAATTTAAGAAAATTTTTATAAATAG
110009768 CAGAAAT
131 CAGAAAT
*
110009775 TTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
* **** *
110009840 AAACATAATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATT
66 AAACATAATTATTACTAAATACATTATAATTAAAATATATAATTTAAGAAAATT
110009894 CTTAATAATT
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
137 108 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (137 bp):
TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTACTAAATACATTATAATTAAAATATATAATTTAAGAAAATTTTTATAAATAG
CAGAAAT
Found at i:110009855 original size:67 final size:66
Alignment explanation
Indices: 110009647--110009859 Score: 159
Period size: 67 Copynumber: 3.2 Consensus size: 66
110009637 ATTGTTAATG
*
110009647 TTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTAATATCA-TAATAAATATTTTAATCATATTTAAACATAAT
110009712 TA
65 TA
* * * * * ***
110009714 TTACTAAATATATTTTAATTAA-AATATATAAT-T--TAATAAA-ATTTTTATAATTAGCAGAAA
1 TTA-T--TTAAATTTTAA-TAAGATTAT-TAATATCATAATAAATATTTTAATCA-TA-TTTAAA
** * *
110009774 TTTGTTATTG
59 --CATAATTA
*
110009784 TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTAATATC-ATAATAAATATTTTAATCATATTTAAACATAAT
110009849 TA
65 TA
110009851 TTA-TTAAAT
1 TTATTTAAAT
110009860 ACATTATAAT
Statistics
Matches: 105, Mismatches: 26, Indels: 31
0.65 0.16 0.19
Matches are distributed among these distances:
66 21 0.20
67 33 0.31
68 4 0.04
69 4 0.04
70 30 0.29
71 13 0.12
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (66 bp):
TTATTTAAATTTTAATAAGATTATTAATATCATAATAAATATTTTAATCATATTTAAACATAATT
A
Found at i:110009937 original size:137 final size:135
Alignment explanation
Indices: 110009659--110009937 Score: 321
Period size: 137 Copynumber: 2.0 Consensus size: 135
110009649 ATTTAAATTT
* * *
110009659 TAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTACTAAATA
1 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTACTAAATA
* * * * *
110009724 TATTTTAATTAAAATATATAATTTAATAAAATTTTTATAATTAGCAGAAATTTGTTATTGTTATT
66 CATTATAATTAAAATATATAATTTAATAAAATTTTAATAATTA-CA-AAATTTCTTATTGTTACT
* **
110009789 TAAATTT
129 CAAATCA
*
110009796 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTACTAAATA
**** *
110009861 CATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT-C-ATA-TTCTTATATGAATTT
66 CATTATAATTAAAATATATAATTTAATAAAATT-TTAATAATTACAAAATTTCTTAT-TG---TT
110009923 ACTCAAATCA
126 ACTCAAATCA
110009933 TAATA
1 TAATA
110009938 TATGATAAAT
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
133 6 0.05
134 4 0.03
136 1 0.01
137 101 0.84
138 8 0.07
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (135 bp):
TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTACTAAATA
CATTATAATTAAAATATATAATTTAATAAAATTTTAATAATTACAAAATTTCTTATTGTTACTCA
AATCA
Found at i:110012550 original size:21 final size:21
Alignment explanation
Indices: 110012507--110012562 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
110012497 AAGCAGATGG
*
110012507 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAA-CAATTATAT
*
110012529 AGCCACTGCAAACAATTGTAT
1 AGCCACTGCAAACAATTATAT
110012550 AGCCACTGCAAAC
1 AGCCACTGCAAAC
110012563 GGGGGAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.21
Consensus pattern (21 bp):
AGCCACTGCAAACAATTATAT
Found at i:110013676 original size:33 final size:33
Alignment explanation
Indices: 110013634--110013767 Score: 172
Period size: 33 Copynumber: 4.2 Consensus size: 33
110013624 AAAAATGGCA
*
110013634 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
**
110013667 AGAGAAACAAAA-A----ACCA-CTACAGAAAAT
1 AGAGAAACAAAACATGGTA-CAGAAACAGAAAAT
*
110013695 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
*
110013728 AGAGAAACAAAACATGGTACAGAAATAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
110013761 AGAGAAA
1 AGAGAAA
110013768 AATAAAGCAG
Statistics
Matches: 86, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
28 21 0.24
29 3 0.03
32 3 0.03
33 59 0.69
ACGTcount: A:0.60, C:0.12, G:0.19, T:0.09
Consensus pattern (33 bp):
AGAGAAACAAAACATGGTACAGAAACAGAAAAT
Found at i:110022877 original size:46 final size:46
Alignment explanation
Indices: 110022817--110023044 Score: 339
Period size: 46 Copynumber: 5.0 Consensus size: 46
110022807 TTTGACATGA
* * * * ** * * *
110022817 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
110022863 TGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATTAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
110022909 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
110022955 TGCCATGATATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
110023001 TGCCATGGTATCTTTCAAACATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
110023045 AGAGCACACT
Statistics
Matches: 166, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 166 1.00
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:110024056 original size:3 final size:3
Alignment explanation
Indices: 110024048--110024073 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
110024038 ATATATGTTT
110024048 TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TC
110024074 TCCATTCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
TCC
Found at i:110029217 original size:32 final size:32
Alignment explanation
Indices: 110029116--110029219 Score: 165
Period size: 32 Copynumber: 3.2 Consensus size: 32
110029106 GTCCACATAT
*
110029116 GTTTTTTTTCTTTGTTAAGTTGATTGTGTCAAA
1 GTTTGTTTT-TTTGTTAAGTTGATTGTGTCAAA
110029149 GTTT-TTTTTTTGGTTAAGTTGATTGTGTCAAA
1 GTTTGTTTTTTT-GTTAAGTTGATTGTGTCAAA
*
110029181 GTTTGTTTTTTTGTTAAGTTGATTATGTCAAA
1 GTTTGTTTTTTTGTTAAGTTGATTGTGTCAAA
110029213 GTTTGTT
1 GTTTGTT
110029220 CCTATTTTTA
Statistics
Matches: 68, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
31 3 0.04
32 54 0.79
33 11 0.16
ACGTcount: A:0.18, C:0.04, G:0.20, T:0.58
Consensus pattern (32 bp):
GTTTGTTTTTTTGTTAAGTTGATTGTGTCAAA
Found at i:110032922 original size:24 final size:24
Alignment explanation
Indices: 110032890--110032941 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
110032880 AATCAAAGTC
* *
110032890 AAATATATTATGCT-ATTAAATGCT
1 AAATATATTATACTCA-TAAATACT
*
110032914 AAATTTATTATACTCATAAATACT
1 AAATATATTATACTCATAAATACT
110032938 AAAT
1 AAAT
110032942 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (24 bp):
AAATATATTATACTCATAAATACT
Found at i:110039767 original size:18 final size:18
Alignment explanation
Indices: 110039744--110039816 Score: 92
Period size: 18 Copynumber: 4.1 Consensus size: 18
110039734 CAATCTCAAC
* *
110039744 TACTGTATATGTGAACAG
1 TACTGTATACGTGAATAG
*
110039762 TACTGTATACGTAAATAG
1 TACTGTATACGTGAATAG
*
110039780 TATTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
* *
110039798 TATTGTATACATGAATAG
1 TACTGTATACGTGAATAG
110039816 T
1 T
110039817 TCCATAAATG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (18 bp):
TACTGTATACGTGAATAG
Found at i:110042178 original size:20 final size:20
Alignment explanation
Indices: 110042150--110042195 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
110042140 GGTCAAAACT
*
110042150 CCTTTTAGTACTCTTTCATG
1 CCTTCTAGTACTCTTTCATG
110042170 CCTTCTAGTACTCTTTCATG
1 CCTTCTAGTACTCTTTCATG
110042190 CCTTCT
1 CCTTCT
110042196 TCTTCATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.13, C:0.30, G:0.09, T:0.48
Consensus pattern (20 bp):
CCTTCTAGTACTCTTTCATG
Found at i:110050036 original size:107 final size:109
Alignment explanation
Indices: 110049910--110050123 Score: 342
Period size: 109 Copynumber: 2.0 Consensus size: 109
110049900 TTGTCCAAAT
* *
110049910 CTATTCTTTAATCTTATATTTTCTCAAAAT-AAAAATAGA-CTTTTCCCAAAATATTTAAACTAA
1 CTATTCTTTAATCTTATATTTTCCCAAAATGAAAAATAGATCTTTTCCCAAAATATTTAAACCAA
* ** *
110049973 GTTTAAATTTTAAAATTGACATTATTAAAAAAGTTCTACCTAAC
66 ATTTAAATTTTAAAATCAACATTACTAAAAAAGTTCTACCTAAC
* *
110050017 CTATTCTTTAATCTTATATTTTCCCAAAATGAAAAATAGATTTTTTCCCAAAATATTTAATCCAA
1 CTATTCTTTAATCTTATATTTTCCCAAAATGAAAAATAGATCTTTTCCCAAAATATTTAAACCAA
110050082 ATTTAAATTTTAAAATCAACATTACTAAAAAAGTTCTACCTA
66 ATTTAAATTTTAAAATCAACATTACTAAAAAAGTTCTACCTA
110050124 CCTCGAATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
107 29 0.30
108 9 0.09
109 59 0.61
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (109 bp):
CTATTCTTTAATCTTATATTTTCCCAAAATGAAAAATAGATCTTTTCCCAAAATATTTAAACCAA
ATTTAAATTTTAAAATCAACATTACTAAAAAAGTTCTACCTAAC
Found at i:110061277 original size:21 final size:21
Alignment explanation
Indices: 110061251--110061291 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
110061241 AGACGAGCAA
* *
110061251 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
110061272 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
110061292 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:110065678 original size:440 final size:440
Alignment explanation
Indices: 110064868--110069602 Score: 6887
Period size: 439 Copynumber: 10.8 Consensus size: 440
110064858 ATAATTTAGC
* * * * *
110064868 GTATCAAATAATCATATGATGACATCTTATTTAAAGTTTTTAAAAAATAAATATGAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * * * * * * * * * ** *
110064933 TTTTATATAAATTAGTGGCATGGTTTGATGTATTAATTGTGGGTTAATTTTCACACCTAATACAT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
* * * * **
110064998 CAAATATGAATTTTTATTTTTCT-TAGTATTATAATTATTTATTTCCTTTTTCATTTGTTACTAT
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTC-TTTTCATTTTTTACTGC
* * * * * * * *
110065062 TTAA-AGTAAGTAGTTGATACTTAAAAGTAACAAAAATATTTTTTCTATATAGGACCTTGTTAAT
195 CTAACA-TAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAAT
** * * * ** * * * *
110065126 TTAACCGCAATTCAAC-TTGATGGGTGCGTGAATTTAAAAAAGATTCATAATCTATCAAGAGACA
259 TTAAGGGAAATT-TACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCA
* * * * *
110065190 TCAACTTTGAAATCCTTGATTGCACTAACTGCAAAAGTTTAATTGAACTTTGAAATGAAGATGAT
323 TCAACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGAT
* * * * *
110065255 CATATGGTATATGTTTTCAATTTTTTTTTTGAAAACAATGATTTATAATTTGAT
388 CATATGGTATGTGTTTTC-ATATTTATTTCGAAAAAAATGATTTATAATTTGAT
* *
110065309 GTATTAAATATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * * * *
110065374 TTTTATTTAGACAAATGACATCGTATAATTTATTAATTGTGGGTGAATTTTCATGCCCGATA-GT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
* * *
110065438 CAAATATAAATTTTTATTTTTTTATAATATTATAATTATTTATTTTCTTTTCATTTGTTATTGCC
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
*
110065503 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCCTGTTAATTT
196 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
** * *** * * * * *
110065568 AACCGCAATTTA-TTCTGATAAGTGCTTGATTTTAATGAAGATACGTAATTTTTCAAGAGCCATC
261 AAGGGAAATTTACTT-TGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATC
** *
110065632 AACCTTGAAATCCTTGATTGCTCTCAA-TGTAAAAGTTTAGTTGAACTTTGGAATGAAGGTGATC
325 AACCTTGAAATCCTTGATTGCTCT-AACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATC
*
110065696 ATATGGAATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
389 ATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
* *
110065748 GTATCAAATATTTATATGATTACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAATATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * * *
110065813 TTTTATTTAGATAAATAAAATTGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
**
110065878 CAAATATAAATTTTT-TATTTTTTATTCTATTATAATTATTTATTTTCTTTTCATTTTTTACTGC
131 CAAATATAAATTTTTAT-TTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGC
* *
110065942 CTAACATAAATAGTTGATGCTT-AAAGTAATACACTTATTTTTTCTATACAAGGCCTTGTTAATT
195 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATT
* *
110066006 TAAGGAAAATTTACTTTAAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATC
260 TAAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATC
* *
110066071 AAGCTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGATCA
325 AACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCA
110066136 TATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
390 TATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
110066187 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* *
110066252 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCAC-CCCGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
**
110066316 CAAATATAAATTTTTA--TTTTTATAGTATTATAATTATTTATTTTCTTTTCAACTTTTACTGCC
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
*
110066379 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGTGCCTTGTTAATTT
196 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
**
110066444 AAGAAAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
261 AAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* **
110066509 AGCTTGAAATCCTTGATTGCTCTGGCTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
326 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
*
110066574 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATATTTTTAATTTATAATTTGAT
391 ATGGTATGTGTTTTCATATTTATTTCG-AAAAAA-A----TGATTTATAATTTGAT
110066630 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * *
110066695 TTTTATTTAGATAAATGATATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCTGACACGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
**
110066760 CAAATATAAATTTTTA-TTTTTTATTCTATTATAATTATTTA-----TTTTC-----TT--T---
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
* *
110066809 T----T--AT--TT--T--TTAAAAGTAATACAATTA-TTTTTCTATATAGGGCCTTGTTAATAT
196 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* * *
110066861 AAGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGAAAGATACCTAACCTTTCAAGAGCCATCA
261 AAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* * * * *
110066926 ACCTTGAATTCCTT-ATTTTCTTTAACTGCCGAAGTTTGGTTGAACTTTGGAATGAAGATGATCA
326 ACCTTGAAATCCTTGA-TTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCA
* * ** *
110066990 TATGGTATGTATTTTTATATTTATTTTTAAAAAATGATTTATAATTTATAATTTGAT
390 TATGGTATGTGTTTTCATATTTA-TTTCGAAAAA--A---ATGATTTATAATTTGAT
*
110067047 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTGAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
*
110067112 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGTCCGATACGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
* ** *
110067177 CAAGTATAAATTTTTA-TTTTTTATTCTATTATAATTATTTATTTTCTTTTCATTTTTTACCGCC
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
110067241 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
196 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
*
110067306 AAGGGAAATTGACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
261 AAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* * *
110067371 AGCTTAAAATCCTTGATTGCTCTAACTGCAAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
326 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
*
110067436 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAA
391 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
110067486 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
110067551 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
**
110067616 CAAATATAAATTTTTA-TTTTTTATTCTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
* *
110067680 TAAAATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCTTTGTTAATTT
196 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* * *
110067745 AAGGAAAATTTACTTTGAGGGGTGTGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCA
261 AAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* *
110067810 AGCTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
326 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
110067875 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
391 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
*
110067925 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAATTAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * *
110067990 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCACCCCCGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
110068055 CAAATATAAATTTTTA-TTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
*
110068119 TAACATAAATAGTTTATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
196 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* * * *
110068184 AATGGAAATTCACTTTGAGGGGTGCATGAATTTAAGGAAGATACCTAACCTTTCAAGAGCCATCA
261 AAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* * ** *
110068249 ACCTTGAAATCCTTAATTTCTCTGGCTGCCAAAGTTTGGTTGAACTTTGGAATGAAGATGATCAT
326 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
110068314 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
391 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
110068364 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * ** *
110068429 TTTTATTTAGATAAATGACATCATTTGATTTATTAATTGTAGATGAATTTTCACGCTTGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
* *
110068494 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTATTTTTATTTTTTACTGCC
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
* * *
110068559 TAAAATAAATAGTTGATGGTTAAAAGTAATACAATTATTTTTTCTATACAAGGCCTTGTTAATTT
196 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* * *
110068624 AAGGGAAATTCACTTTGAGGGGTGCGTGAATTTAGGGAAGATACCTAACCTTTCAAGAGCCATCA
261 AAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* ** *** *
110068689 ACCTTGAAATCCTTAATTTATCTGGTTGCCAAAGTTTGGTTGAACTTTGGAATGAAGATGATCAT
326 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
110068754 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAAAATGATTTATAATTTGAT
391 ATGGTATGTGTTTTCATATTTATTTCG--AAAAAAATGATTTATAATTTGAT
*
110068806 GTATCAAATATTTATATGACAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * *
110068871 TTTTATTTAGATAAATGACATCATTTGATTTATTAATTGTGGATGAATTTTCACGGCCGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
*
110068936 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATCTTTTACTGCC
131 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
* *
110069001 TAACATAAATAGTTGATGCTTAAAAGTAATATAATTATTTTTTCTATACAGGGTCTTGTTAATTT
196 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* * * * *
110069066 ATGGGAAATTGACTTTGATGGGTGCGTGAATTTAAGGAACATACATAATCTTTCAAGAGCCATCA
261 AAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* * ** *
110069131 ACCTTGAAATCCTTAATTTCTCTGGCTGCCAAAGTTTGGTTGAACTTTGGAATGAAGATGATCAT
326 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
* ** *
110069196 ATAGTATGTGTTTTCATATTTATTTTAAAAAAAAAAGATTTATAA--T--T
391 ATGGTATGTGTTTTCATATTTA-TTTCGAAAAAAATGATTTATAATTTGAT
* *
110069243 -TAT--AAT-TTGATGT-ATCAA-A-TTTA---AAA-TTTTTAAAAAATAAATATAAAAGATTTT
1 GTATCAAATATTTATATGAT-AACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTT
* *
110069297 ATTTTATTTAGATAAATGACATC-TTTGATTTATTAATCGTGGACGAATTTTCACGCCCGATACG
65 ATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACG
110069361 TCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGC
130 TCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGC
*
110069426 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATATAGGGCCTTGTTAATT
195 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATT
* * *
110069491 TAAGGG-AATTTACTTTGAGGAGTGCATGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATT
260 TAAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATC
* * ** *
110069555 AATC-T-AAGAGTGCTTGATTGCTCTAACTGTGAAAGTTTAGTTGCACTT
325 AACCTTGAA-A-TCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTT
110069603 CCTTGCCTCA
Statistics
Matches: 3954, Mismatches: 279, Indels: 138
0.90 0.06 0.03
Matches are distributed among these distances:
416 1 0.00
417 345 0.09
418 21 0.01
419 1 0.00
420 1 0.00
421 2 0.00
422 7 0.00
423 2 0.00
424 4 0.00
425 83 0.02
426 169 0.04
427 53 0.01
428 3 0.00
430 1 0.00
431 4 0.00
432 3 0.00
433 8 0.00
434 3 0.00
435 2 0.00
436 68 0.02
437 193 0.05
438 35 0.01
439 1456 0.37
440 559 0.14
441 147 0.04
442 414 0.10
443 135 0.03
444 49 0.01
445 184 0.05
446 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.43
Consensus pattern (440 bp):
GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
AAGGGAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
Found at i:110066818 original size:18 final size:18
Alignment explanation
Indices: 110066769--110066818 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
110066759 TCAAATATAA
110066769 ATTTTTATTTTTTATTCT
1 ATTTTTATTTTTTATTCT
* * * *
110066787 ATTATAATTATTTATTTT
1 ATTTTTATTTTTTATTCT
*
110066805 CTTTTTATTTTTTA
1 ATTTTTATTTTTTA
110066819 AAAGTAATAC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTTATTTTTTATTCT
Found at i:110072833 original size:52 final size:53
Alignment explanation
Indices: 110072760--110072860 Score: 118
Period size: 52 Copynumber: 1.9 Consensus size: 53
110072750 GGTATAACAA
* *
110072760 TTTAAAGTAAATAATCAAAATG-ATTTTAAA-TAAATAATATATAAAAACGAAT
1 TTTAAAATAAATAATCAAAATGAAATTTAAAGTAAATAATATA-AAAAACGAAT
* *
110072812 TTTAAAATAAATACT-ATAAATGACAATTTAAAGTAAATAGTATAAAAAA
1 TTTAAAATAAATAATCA-AAATGA-AATTTAAAGTAAATAATATAAAAAA
110072861 TTAAAAGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
51 1 0.02
52 18 0.44
54 12 0.29
55 10 0.24
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (53 bp):
TTTAAAATAAATAATCAAAATGAAATTTAAAGTAAATAATATAAAAAACGAAT
Found at i:110075369 original size:18 final size:18
Alignment explanation
Indices: 110075346--110075434 Score: 106
Period size: 18 Copynumber: 4.9 Consensus size: 18
110075336 CGTTTATGGT
*
110075346 ACTATTCACGTATACGGC
1 ACTATTCACGTATACAGC
* *
110075364 ACTATTCACGTATATAGT
1 ACTATTCACGTATACAGC
*
110075382 ACTATTCATGTATACAGC
1 ACTATTCACGTATACAGC
* * *
110075400 ACTATTCATGTATACGGT
1 ACTATTCACGTATACAGC
*
110075418 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
110075435 TAGTTGGGAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 60 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:110075395 original size:36 final size:36
Alignment explanation
Indices: 110075344--110075434 Score: 128
Period size: 36 Copynumber: 2.5 Consensus size: 36
110075334 ACCGTTTATG
* *
110075344 GTACTATTCACGTATACGGCACTATTCACGTATATA
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
* * *
110075380 GTACTATTCATGTATACAGCACTATTCATGTATACG
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
*
110075416 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
110075435 TAGTTGGGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (36 bp):
GTACTATTCACGTATACAGCACTATTCACGTATACA
Found at i:110082804 original size:23 final size:23
Alignment explanation
Indices: 110082777--110082821 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
110082767 AAAAATAAAT
110082777 ATAAAAGAT-TTTATTTTATTTAG
1 ATAAAAGATATTT-TTTTATTTAG
*
110082800 ATAAATGATATTTTTTTATTTA
1 ATAAAAGATATTTTTTTATTTA
110082822 TTTTCATGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (23 bp):
ATAAAAGATATTTTTTTATTTAG
Found at i:110083851 original size:443 final size:440
Alignment explanation
Indices: 110082282--110084838 Score: 3378
Period size: 443 Copynumber: 5.9 Consensus size: 440
110082272 GAAAAAGAAA
* * * **
110082282 TTATAATTT-AGTGTATCAAATAATCATATGATGACACCTTATTTAAAGTTTTTAAAAAATAAAT
1 TTATAATTTGA-TGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAAT
* * * * * * * *
110082346 -TGAAGGATTTTATTTTATATAAATTAATGGCATCGTTTGATGTATTAATTGTGGGTTAATTTTC
65 ATAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTC
* * * * * * *
110082410 ACACCCAATACATAAAATATGAATTTTTATTTTTCTTA-A-TATTATAATTATTTATTTCCTTTT
130 ACGCCCGATACGTCAAATATAAATATTTATTTTT-TTATAGTATTATAATTATTTATTTTC-TTT
* * * * * * *
110082473 TCATTTGTTACT--AT-A-GTAAATAGTTGGTAG-TTAAAAGTAATATAAATA-TTTTTTCTAGA
193 TCATTTTTTACTGCCTAACATAAATAGTTGAT-GCTTAAAAGTAATACAATTATTTTTTTCTATA
* * * * ** * *
110082532 CAGGGCCCTGTTAATTTAAGGGAAATTCACCTTGGTCAGTGCGTGAATTTAAGAAAGATACCTTA
257 CAGGGCCTTGTTAATTTAAGGCAAATTCACTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAA
* * *
110082597 TTTTTCAAGAGCCATCAAACTTGAAATCCTTGATTGCTCTAACTGTGAAAATTTGGTTGAACTTT
322 TTTTTCAAGAGCCATC-AACTTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAACTTT
*
110082662 GGAATGAAGATGATCATATGGTATGTGTTTTTATATTTTTTTC--AAAAAA--AT
386 GGAATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
* *
110082713 TTATAATTTAATGTATCAAATATTCATATGATAACATTTTATTTAAA-TTTTTAAAAAAATAAAT
1 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTT-AAAAAATAAAT
*
110082777 ATAAAAGATTTTATTTTATTTAGATAAATG--AT--ATT--TTT-TT-A-T-T---T--ATTTTC
65 ATAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTC
* * *
110082827 ATGCCCGATATGTCAAATATAAATATTTA-TTTTTTATAATATTATAATTATTTATTTTCTTTTC
130 ACGCCCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTC
* * *
110082891 ATTTTTTAATGCCTAACATAAATAGCTGATGCTGAAAAGTAATACAATTA-TTTTTTCTATACAG
195 ATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTCTATACAG
* * * * *
110082955 GGCCTTGTTAATTTAAGGGAAATTTAC-TTTGAGAGGTGTGTGAATTTAAGGAAGATACCTAATC
260 GGCCTTGTTAATTTAAGGCAAATTCACTTTTGTG-GGTGCGTGAATTTAAGGAAGATACCTAATT
110083019 TTTCAAGAGCCATCAAGCTTGAAATCCTTGATTG--CT--CT---AAA-TTTAGTTGAACTTTGG
324 TTTCAAGAGCCATCAA-CTTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAACTTTGG
110083076 AATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
388 AATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
* * *
110083129 TTATAATTTGATGTATCAAATATTTGTATTATAACATTTTATTTACAGTTTTTTTAAAAAATAAA
1 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAG--TTTTTAAAAAATAAA
*
110083194 TATAAAAGATTTTATTTTGTTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTT
64 TATAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTT
* *
110083259 CAAGCCCGATACGTCAAATATAAATTTTTA-TTTTTTATAGTATTATAATTATTTATTTTCTTTT
129 CACGCCCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTT
* * *
110083323 CATTTTTTATTGCCTAACATAAATAGTTTATGCTTAAAAGTAATACAATTATTTTTTTTTCTATG
194 CATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA--TTTTTTTCTATA
* *
110083388 CAGGGCCTTGCTAATATAAGGCAAATTCACTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAA
257 CAGGGCCTTGTTAATTTAAGGCAAATTCACTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAA
* * *
110083453 TTTTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGAACTTT
322 TTTTTCAAGAGCCATCAAC-TTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAACTTT
* *
110083518 GGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGAT
386 GGAATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
*
110083573 TTATAATTTGATGTATCAAATATTTATATGATAAAATTTTATTTAAAGTTTTTAAAAAATAAATA
1 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
* * *
110083638 TAATAGATTTTATGTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGAATTTTCA
66 TAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCA
* *
110083703 CGCCCAATATGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
131 CGCCCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
*
110083768 TTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTTCTATGCA
196 TTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA--TTTTTTTCTATACA
* *
110083833 GGGCCTTGTTAATATAAGGCAAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAATT
259 GGGCCTTGTTAATTTAAGGCAAATTCACTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAATT
* * *
110083898 TTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGAACTTTGG
324 TTTCAAGAGCCATCAAC-TTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAACTTTGG
* *
110083963 AATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATTG-T
388 AATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAA-TGAT
*
110084016 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTCTTAAAAAATAAATA
1 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
* ** *
110084081 TAAAAGATTTTATTTTATTTAGATAAATGACATCATTCAATTTATTATTTGTGGGTGAATTTTCA
66 TAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCA
*
110084146 CGCTCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
131 CGCCCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
*
110084211 TTTTTTATTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA-TTTTTTCTATACAGG
196 TTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTCTATACAGG
* ** * *
110084275 GCCTTGTTAATTTAAGGCGAATTTGC-TTTGACGGGTGCGTGAATTTAAGGAAGATACCTAATCT
261 GCCTTGTTAATTTAAGGCAAATTCACTTTTG-TGGGTGCGTGAATTTAAGGAAGATACCTAATTT
* * * * * * *
110084339 TTCAAGTGCCATCAAGCTTCAAATCTTTGAATGCTCTAACTGCGAAAGTTTAGTTGAGCTTTAGA
325 TTCAAGAGCCATCAA-CTTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAACTTTGGA
110084404 ATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
389 ATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
*
110084456 TTATAATTTGATATATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
1 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
* * *
110084521 TAAAAGATTTTAGTTTATTTAGATAAATGACATCATTTGATTTATTAATTGTGGATGAATTTTCA
66 TAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCA
* ** * * * *
110084586 CACTTGATATGTAAAATATAAATTTTTATTTTTTTATAGTATTATAATTTTTTATTTT-TTTT-A
131 CGCCCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
* * * * * *
110084649 CTTTTTACTGCTTAAAATAAATAGTTGATGCTTAAACGTAATACAATTATTTTTTTATATACAGA
196 TTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTCTATACAGG
* * * * * *
110084714 GCCTTGTTAACTTAAAAG-AAATTC-GTTGTGGTGGGTGCGTGAATTTAATGAAGATACCTAATA
261 GCCTTGTTAA-TTTAAGGCAAATTCACTT-TTGTGGGTGCGTGAATTTAAGGAAGATACCTAATT
** * * * *
110084777 TTTCGGGAGCTATCAACCTT-AAACTCCTTCATTGCTATAACTGTGAAAGTTTAGTTGAACTT
324 TTTCAAGAGCCATCAA-CTTGAAA-TCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAACTT
110084839 CCTTGCCTCA
Statistics
Matches: 1915, Mismatches: 154, Indels: 106
0.88 0.07 0.05
Matches are distributed among these distances:
412 55 0.03
413 3 0.00
414 6 0.00
415 3 0.00
416 64 0.03
417 46 0.02
418 43 0.02
419 13 0.01
420 121 0.06
422 3 0.00
423 1 0.00
424 4 0.00
425 4 0.00
426 3 0.00
427 1 0.00
428 3 0.00
430 7 0.00
431 53 0.03
432 25 0.01
433 112 0.06
435 1 0.00
436 95 0.05
437 5 0.00
438 50 0.03
439 114 0.06
440 351 0.18
441 1 0.00
442 102 0.05
443 513 0.27
444 113 0.06
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.43
Consensus pattern (440 bp):
TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
TAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCA
CGCCCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
TTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTCTATACAGG
GCCTTGTTAATTTAAGGCAAATTCACTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAATTTT
TCAAGAGCCATCAACTTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAACTTTGGAAT
GAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
Found at i:110084429 original size:883 final size:871
Alignment explanation
Indices: 110082282--110084838 Score: 3386
Period size: 883 Copynumber: 2.9 Consensus size: 871
110082272 GAAAAAGAAA
* * * **
110082282 TTATAATTT-AGTGTATCAAATAATCATATGATGACACCTTATTTAAAGTTTTTAAAAAATAAAT
1 TTATAATTTGA-TGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAAT
* * * * * * * *
110082346 -TGAAGGATTTTATTTTATATAAATTAATGGCATCGTTTGATGTATTAATTGTGGGTTAATTTTC
65 ATAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTC
* * * * * *
110082410 ACACCCAATACATAAAATATGAATTTTTATTTTTCTTA-A-TATTATAATTATTTATTTCCTTTT
130 ACGCCCGATACGTCAAATATAAATTTTTATTTTT-TTATAGTATTATAATTATTTATTTTC-TTT
* * * * * *
110082473 TCATTTGTTA----CTATA-GTAAATAGTTGGTAG-TTAAAAGTAATATAAATATTTTTTCTAGA
193 TCATTTTTTATTGCCTA-ACATAAATAGTTGAT-GCTTAAAAGTAATACAATTATTTTTTCTATA
* * * * *
110082532 CAGGGCCCTGTTAATTTAAGG-GAAATTCACCTTG-GTCAGTGCGTGAATTTAAGAAAGATACCT
256 CAGGGCCTTGTTAATTTAAGGCG-AATTAACTTTGCG--GGTGCGTGAATTTAAGGAAGATACCT
* * * *
110082595 TATTTTTCAAGAGCCATCAAACTTGAAATCCTTGATTGCTCTAACTGTGAAAATTTGGTTGAACT
318 AATTTTTCAAGAGCCATC-AACTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACT
*
110082660 TTGGAATGAAGATGATCATATGGTATGTGTTTTTATATTTTTTTC--AAAAAA--ATTTATAATT
382 TTGGAATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGATTTATAATT
* *
110082721 TAATGTATCAAATATTCATATGATAACATTTTATTTAAA-TTTTTAAAAAAATAAATATAAAAGA
447 TGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTT-AAAAAATAAATATAAAAGA
* * *
110082785 TTTTATTTTATTTAGATAAATG--AT-ATT-TTT-TT-A-T-T--T--ATTTTCATGCCCGATAT
511 TTTTATGTTATTTAGATAAATGACATCTTTATTTATTAATTGTGGTGAATTTTCACGCCCGATAT
* *
110082838 GTCAAATATAAATATTTA-TTTTTTATAATATTATAATTATTTATTTTCTTTTCATTTTTTAATG
576 GTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTG
* *
110082902 CCTAACATAAATAGCTGATGCTGAAAAGTAATACAATTA-TTTTTTCTATACAGGGCCTTGTTAA
641 CCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTCTATACAGGGCCTTGTTAA
** * * * *
110082966 TTTAAGGGAAATTTAC-TTTGAGAGGTGTGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCC
706 -TTAA-GGAAATTCGCTTTTGTG-GGTGCGTGAATTTAAGGAAGATACCTAATATTTCAAGAGCT
*
110083030 ATCAAGCTTGAAATCCTTGATTGCTC-T----AAA-TTTAGTTGAACTTTGGAATGAAGATGATC
768 ATCAA-CTTGAAATCCTTGATTGCTCTTACGGAAAGTTTAGTTGAACTTTGGAATGAAGATGACC
*
110083089 ATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
832 ATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGAT
* * *
110083129 TTATAATTTGATGTATCAAATATTTGTATTATAACATTTTATTTACAGTTTTTTTAAAAAATAAA
1 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAG--TTTTTAAAAAATAAA
*
110083194 TATAAAAGATTTTATTTTGTTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTT
64 TATAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTT
*
110083259 CAAGCCCGATACGTCAAATATAAATTTTTA-TTTTTTATAGTATTATAATTATTTATTTTCTTTT
129 CACGCCCGATACGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTT
* *
110083323 CATTTTTTATTGCCTAACATAAATAGTTTATGCTTAAAAGTAATACAATTATTTTTTTTTCTATG
194 CATTTTTTATTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA---TTTTTTCTATA
* * * * *
110083388 CAGGGCCTTGCTAATATAAGGCAAATTCACTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAA
256 CAGGGCCTTGTTAATTTAAGGCGAATTAAC-TTTGCGGGTGCGTGAATTTAAGGAAGATACCTAA
* * * *
110083453 TTTTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGAACTTT
320 TTTTTCAAGAGCCATCAAC-TTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTT
* *
110083518 GGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTG
384 GGAATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGATTTATAATTTG
* *
110083583 ATGTATCAAATATTTATATGATAAAATTTTATTTAAAGTTTTTAAAAAATAAATATAATAGATTT
449 ATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTT
*
110083648 TATGTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGAATTTTCACGCCCAATAT
514 TATGTTATTTAGATAAATGACATC-TTT-ATTTATTAATTGT-GGTGAATTTTCACGCCCGATAT
110083713 GTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTG
576 GTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTG
*
110083778 CCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTTCTATGCAGGGCCTTGTT
641 CCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA--TTTTTTTCTATACAGGGCCTTGTT
*
110083843 AATATAAGGCAAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAATTTTTCAAGAGC
704 AAT-TAAGG-AAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAATATTTCAAGAGC
110083908 TATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGAACTTTGGAATGAAGATG
767 TATCAAC-TTGAAATCCTTGATTGCTCTTAC--GGAAAGTTTAGTTGAACTTTGGAATGAAGATG
110083973 ACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATTG-T
829 ACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAA-TGAT
*
110084016 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTCTTAAAAAATAAATA
1 TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
* ** *
110084081 TAAAAGATTTTATTTTATTTAGATAAATGACATCATTCAATTTATTATTTGTGGGTGAATTTTCA
66 TAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCA
* *
110084146 CGCTCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
131 CGCCCGATACGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
110084211 TTTTTTATTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGG
196 TTTTTTATTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGG
** *
110084276 CCTTGTTAATTTAAGGCGAATTTGCTTTGACGGGTGCGTGAATTTAAGGAAGATACCTAATCTTT
261 CCTTGTTAATTTAAGGCGAATTAACTTTG-CGGGTGCGTGAATTTAAGGAAGATACCTAATTTTT
* * * * * *
110084341 CAAGTGCCATCAAGCTTCAAATCTTTGAATGCTCTAACTGCGAAAGTTTAGTTGAGCTTTAGAAT
325 CAAGAGCCATCAA-CTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAAT
*
110084406 GAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGATTTATAATTTGATATA
389 GAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGATTTATAATTTGATGTA
110084471 TCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA-GT
454 TCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATG-
* ** *
110084535 TTATTTAGATAAATGACATCATTTGATTTATTAATTGTGGATGAATTTTCACACTTGATATGTAA
518 TTATTTAGATAAATGACATC-TTT-ATTTATTAATTGTGG-TGAATTTTCACGCCCGATATGTCA
* * * *
110084600 AATATAAATTTTTATTTTTTTATAGTATTATAATTTTTTATTTT-TTTT-ACTTTTTACTGCTTA
580 AATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCTA
* * * *
110084663 AAATAAATAGTTGATGCTTAAACGTAATACAATTATTTTTTTATATACAGAGCCTTGTTAACTTA
645 ACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTCTATACAGGGCCTTGTTAA-TT-
* * * **
110084728 AAAGAAATTCG-TTGTGGTGGGTGCGTGAATTTAATGAAGATACCTAATATTTCGGGAGCTATCA
708 AAGGAAATTCGCTT-TTGTGGGTGCGTGAATTTAAGGAAGATACCTAATATTTCAAGAGCTATCA
* * *
110084792 ACCTT-AAACTCCTTCATTGCTATAACTGTGAAAGTTTAGTTGAACTT
772 A-CTTGAAA-TCCTTGATTGCTCTTAC-G-GAAAGTTTAGTTGAACTT
110084839 CCTTGCCTCA
Statistics
Matches: 1511, Mismatches: 132, Indels: 102
0.87 0.08 0.06
Matches are distributed among these distances:
847 38 0.03
848 4 0.00
849 33 0.02
850 97 0.06
852 2 0.00
853 29 0.02
855 3 0.00
856 154 0.10
857 3 0.00
858 7 0.00
860 85 0.06
861 5 0.00
862 2 0.00
864 2 0.00
866 3 0.00
867 2 0.00
868 1 0.00
869 1 0.00
870 1 0.00
873 1 0.00
875 33 0.02
876 81 0.05
878 10 0.01
879 206 0.14
880 11 0.01
881 46 0.03
882 11 0.01
883 340 0.23
884 1 0.00
885 101 0.07
886 87 0.06
887 109 0.07
888 2 0.00
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.43
Consensus pattern (871 bp):
TTATAATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
TAAAAGATTTTATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCA
CGCCCGATACGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
TTTTTTATTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGG
CCTTGTTAATTTAAGGCGAATTAACTTTGCGGGTGCGTGAATTTAAGGAAGATACCTAATTTTTC
AAGAGCCATCAACTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGA
AGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGATTTATAATTTGATGTATC
AAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATGTTA
TTTAGATAAATGACATCTTTATTTATTAATTGTGGTGAATTTTCACGCCCGATATGTCAAATATA
AATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCTAACATAA
ATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTCTATACAGGGCCTTGTTAATTAAGGAAAT
TCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAATATTTCAAGAGCTATCAACTTGAAAT
CCTTGATTGCTCTTACGGAAAGTTTAGTTGAACTTTGGAATGAAGATGACCATATGGTATGTGTT
TTCATATTTATTTCGAAAAAAATGAT
Found at i:110091078 original size:46 final size:46
Alignment explanation
Indices: 110091026--110091335 Score: 451
Period size: 46 Copynumber: 6.7 Consensus size: 46
110091016 TACCATAGTG
* * * * *
110091026 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
* **** * *
110091072 TCTTTCAACCATGGTTTTATTTTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
** *
110091118 TCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
110091164 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
110091210 TCTTTTAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
110091256 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTTCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
110091302 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
110091336 AGAGCACACT
Statistics
Matches: 246, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 242 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:110093708 original size:30 final size:30
Alignment explanation
Indices: 110093641--110093708 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
110093631 CACCCTTAAA
* * *
110093641 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
110093671 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
110093700 AGTATTTAC
1 A-TATTTAC
110093709 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:110098530 original size:31 final size:31
Alignment explanation
Indices: 110098471--110098530 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
110098461 TTACCATTTC
*
110098471 AACTAAATTTTATAATTTTTGTACTAAAAAA
1 AACTAAATTTTATAATTTGTGTACTAAAAAA
110098502 AACTAAATTTTATAATTTGT-TACATAAAA
1 AACTAAATTTTATAATTTGTGTAC-TAAAA
110098531 TTTTCATCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (31 bp):
AACTAAATTTTATAATTTGTGTACTAAAAAA
Found at i:110101230 original size:8 final size:8
Alignment explanation
Indices: 110101217--110101244 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
110101207 GTGGTTAGTC
110101217 CTTGGTTG
1 CTTGGTTG
110101225 CTTGGTTG
1 CTTGGTTG
110101233 CTTGGTTG
1 CTTGGTTG
110101241 CTTG
1 CTTG
110101245 CCGGATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.14, G:0.36, T:0.50
Consensus pattern (8 bp):
CTTGGTTG
Found at i:110101319 original size:15 final size:15
Alignment explanation
Indices: 110101299--110101479 Score: 190
Period size: 15 Copynumber: 11.7 Consensus size: 15
110101289 TTTTTGGTTT
*
110101299 TTTTTTTGCT-AAAA
1 TTTTTTTGCTGGAAA
*
110101313 ATTTTTTGCTGG-AA
1 TTTTTTTGCTGGAAA
110101327 TTTTCTTTGCTGG-AA
1 TTTT-TTTGCTGGAAA
*
110101342 TTTTTTTGGCTGGAAT
1 TTTTTTT-GCTGGAAA
110101358 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
*
110101373 TTTTTTTGCTGCTGGAA
1 TTTTTTTGCTG--GAAA
110101390 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
*
110101405 TTTTTTTGCTGCTGGAA
1 TTTTTTTGCTG--GAAA
110101422 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
110101437 TTTTTTGTTGCTGG-AA
1 -TTTTT-TTGCTGGAAA
*
110101453 TTTTTTTGGTGGAAAAA
1 TTTTTTTGCTGG--AAA
110101470 TTTTTTTGCT
1 TTTTTTTGCT
110101480 TCCCCCCCCT
Statistics
Matches: 143, Mismatches: 11, Indels: 23
0.81 0.06 0.13
Matches are distributed among these distances:
14 23 0.16
15 59 0.41
16 15 0.10
17 46 0.32
ACGTcount: A:0.17, C:0.08, G:0.20, T:0.55
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:110101394 original size:32 final size:32
Alignment explanation
Indices: 110101319--110101479 Score: 240
Period size: 32 Copynumber: 5.0 Consensus size: 32
110101309 AAAAATTTTT
110101319 TGCTGGAATTTTCTTTGCTGG-AATTTTTTTG-
1 TGCTGGAATTTT-TTTGCTGGAAATTTTTTTGC
110101350 -GCTGGAATTTTTTTTGCTGGAAATTTTTTTGC
1 TGCTGGAA-TTTTTTTGCTGGAAATTTTTTTGC
110101382 TGCTGGAATTTTTTTGCTGGAAATTTTTTTGC
1 TGCTGGAATTTTTTTGCTGGAAATTTTTTTGC
*
110101414 TGCTGGAATTTTTTTGCTGGAAA-TTTTTTGT
1 TGCTGGAATTTTTTTGCTGGAAATTTTTTTGC
*
110101445 TGCTGGAATTTTTTTGGTGGAAAAATTTTTTTGC
1 TGCTGGAATTTTTTTGCTGG--AAATTTTTTTGC
110101479 T
1 T
110101480 TCCCCCCCCT
Statistics
Matches: 120, Mismatches: 3, Indels: 11
0.90 0.02 0.08
Matches are distributed among these distances:
30 15 0.12
31 40 0.33
32 47 0.39
33 10 0.08
34 8 0.07
ACGTcount: A:0.16, C:0.08, G:0.22, T:0.53
Consensus pattern (32 bp):
TGCTGGAATTTTTTTGCTGGAAATTTTTTTGC
Found at i:110101908 original size:25 final size:25
Alignment explanation
Indices: 110101877--110101924 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
110101867 TCTTTACTCA
110101877 TTGTCGTGTAACGAGAACAGAGTTG
1 TTGTCGTGTAACGAGAACAGAGTTG
*
110101902 TTGTCGTGTAACGAGAATAGAGT
1 TTGTCGTGTAACGAGAACAGAGT
110101925 AAAGACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (25 bp):
TTGTCGTGTAACGAGAACAGAGTTG
Found at i:110102636 original size:54 final size:54
Alignment explanation
Indices: 110102554--110102861 Score: 535
Period size: 54 Copynumber: 5.7 Consensus size: 54
110102544 AAAACAGAAA
*
110102554 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGGAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
*
110102608 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
* * *
110102662 TCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
*
110102716 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGGAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGGAATTAAAAGGT
* *
110102771 TCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
110102825 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
110102862 CTTAACTTGA
Statistics
Matches: 243, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
54 193 0.79
55 50 0.21
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (54 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
Found at i:110102779 original size:163 final size:153
Alignment explanation
Indices: 110102505--110102861 Score: 561
Period size: 163 Copynumber: 2.3 Consensus size: 153
110102495 ATGTGACCCG
110102505 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATCAACTCACCTCTCGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATCAACTCACCTCTCGC
* *
110102570 AATATGAGTTGATTTTTGAAAAATAGGAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTG
66 AATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTG
110102635 ATTTTTGAAAAACAGAAATTAAA
131 ATTTTTGAAAAACAGAAATTAAA
* * *
110102658 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAATTAAAAGGTTCAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG------AAA---TCAACTC
*
110102723 ACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCTCTCGTA
57 ACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCTCTCGCA
*
110102788 ATATGAGTTGATTTTTGAAAAACAGGAATTAAA
121 ATATGAGTTGATTTTTGAAAAACAGAAATTAAA
110102821 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
110102862 CTTAACTTGA
Statistics
Matches: 185, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
153 43 0.23
159 3 0.02
162 28 0.15
163 111 0.60
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (153 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATCAACTCACCTCTCGC
AATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAACAGAAATTAAA
Found at i:110102807 original size:109 final size:108
Alignment explanation
Indices: 110102554--110102861 Score: 535
Period size: 109 Copynumber: 2.8 Consensus size: 108
110102544 AAAACAGAAA
*
110102554 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGGAATTAAAAGGTTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
*
110102619 CTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
66 CTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGC
* * *
110102662 TCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAATTAAAAGGTTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
*
110102727 CTCGCAATATGAGTTGATTTTTTGAAAAACAGGAATTAAAAGGC
66 CTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGGC
* *
110102771 TCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
110102836 CTCGCAATATGAGTTGATTTTTGAAA
66 CTCGCAATATGAGTTGATTTTTGAAA
110102862 CTTAACTTGA
Statistics
Matches: 188, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
108 87 0.46
109 101 0.54
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (108 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
CTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGC
Found at i:110103054 original size:145 final size:145
Alignment explanation
Indices: 110102868--110103824 Score: 1747
Period size: 145 Copynumber: 6.6 Consensus size: 145
110102858 GAAACTTAAC
** *
110102868 TTGAAAAGCAGATTTTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
110102933 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
110102998 AATATGAGTTGAATT
131 AATATGAGTTGAATT
* *
110103013 TTGAAAAGCAAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
*
110103078 GTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
110103143 AATATGAGTTGAATT
131 AATATGAGTTGAATT
110103158 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
110103223 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
110103288 AATATGAGTTGAATT
131 AATATGAGTTGAATT
*
110103303 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTTAACTCATTTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
110103368 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
110103433 AATATGAGTTGAATT
131 AATATGAGTTGAATT
* * *
110103448 TTGAAAAGCAAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* *
110103513 GTTGAATTTTGAAAACAGAAATTGGAATTACCTCAACGTGTCTTGAGGCTTAACTCATTTCTCGC
66 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
110103578 AATATGAGTTGAATT
131 AATATGAGTTGAATT
110103593 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* *
110103658 GTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCG
66 GTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
110103723 CAATATGAGTTGAATT
130 CAATATGAGTTGAATT
*
110103739 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
110103803 GTTGAATTTTTG-AAACAGAAAT
66 GTTGAA-TTTTGAAAACAGAAAT
110103825 AAAAGCATCA
Statistics
Matches: 788, Mismatches: 22, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
144 7 0.01
145 708 0.90
146 73 0.09
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (145 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
AATATGAGTTGAATT
Found at i:110105419 original size:12 final size:13
Alignment explanation
Indices: 110105398--110105426 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
110105388 CCTCTCCATT
110105398 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
110105411 TTTTT-TTTTTTC
1 TTTTTCTTTTTTC
110105423 TTTT
1 TTTT
110105427 GAATGAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:110106032 original size:26 final size:26
Alignment explanation
Indices: 110106009--110106064 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
110105999 ATTTTTTTAT
110106009 TTTTTTCTTGTCCTT-TTTTCTTTTTG
1 TTTTTTCTTGT-CTTGTTTTCTTTTTG
* * *
110106035 TTTTTTTTTGTTTTGTTTTCTTTTTC
1 TTTTTTCTTGTCTTGTTTTCTTTTTG
110106061 TTTT
1 TTTT
110106065 CATGACTGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.82
Consensus pattern (26 bp):
TTTTTTCTTGTCTTGTTTTCTTTTTG
Found at i:110106040 original size:15 final size:16
Alignment explanation
Indices: 110106022--110106064 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
110106012 TTTCTTGTCC
110106022 TTTTTTCTTTTTGTTT
1 TTTTTTCTTTTTGTTT
*
110106038 TTTTTT-GTTTTGTTT
1 TTTTTTCTTTTTGTTT
110106053 TCTTTTTCTTTT
1 T-TTTTTCTTTT
110106065 CATGACTGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
16 11 0.48
17 3 0.13
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.86
Consensus pattern (16 bp):
TTTTTTCTTTTTGTTT
Found at i:110110875 original size:15 final size:15
Alignment explanation
Indices: 110110855--110110984 Score: 149
Period size: 15 Copynumber: 8.5 Consensus size: 15
110110845 TTTTTGGTTT
110110855 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
110110870 -TTTTTTGCTGG-AA
1 TTTTTTTGCTGGAAA
*
110110883 TTTTCTTTGCTGGAAT
1 TTTT-TTTGCTGGAAA
110110899 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
*
110110914 TTTTTTTGCTGCTGGAA
1 TTTTTTTGCTG--GAAA
*
110110931 TTTTTTTGCTTGAAA
1 TTTTTTTGCTGGAAA
110110946 TTTTTTGCTGCTGG-AA
1 TTTTTT--TGCTGGAAA
*
110110962 TTTTTTTGCTAGAAAA
1 TTTTTTTGCT-GGAAA
110110978 TTTTTTT
1 TTTTTTT
110110985 TGCTTCCCGC
Statistics
Matches: 99, Mismatches: 7, Indels: 17
0.80 0.06 0.14
Matches are distributed among these distances:
13 2 0.02
14 18 0.18
15 39 0.39
16 22 0.22
17 18 0.18
ACGTcount: A:0.17, C:0.08, G:0.18, T:0.56
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:110110879 original size:44 final size:44
Alignment explanation
Indices: 110110830--110110924 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 44
110110820 CTTGCTTAGA
** **
110110830 TTGCTGAATGTTCCTTTTTTGGTTTTTTTTTTGCTGGAAA-TTTT
1 TTGCTGAAT-TTCCTTTGCTGGAATTTTTTTTGCTGGAAATTTTT
*
110110874 TTGCTGGAATTTTCTTTGCTGGAATTTTTTTTGCTGGAAATTTTT
1 TTGCT-GAATTTCCTTTGCTGGAATTTTTTTTGCTGGAAATTTTT
110110919 TTGCTG
1 TTGCTG
110110925 CTGGAATTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
44 31 0.70
45 13 0.30
ACGTcount: A:0.13, C:0.09, G:0.20, T:0.58
Consensus pattern (44 bp):
TTGCTGAATTTCCTTTGCTGGAATTTTTTTTGCTGGAAATTTTT
Found at i:110110916 original size:31 final size:30
Alignment explanation
Indices: 110110854--110110988 Score: 173
Period size: 31 Copynumber: 4.4 Consensus size: 30
110110844 TTTTTTGGTT
*
110110854 TTTTTTTTGCTGGAAATTTTTTGCTGG-AA
1 TTTTTTTTGCTGGAATTTTTTTGCTGGAAA
*
110110883 TTTTCTTTGCTGGAATTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAA-TTTTTTTGCTGGAAA
*
110110914 TTTTTTTGCTGCTGGAATTTTTTTGCTTGAAA
1 TTTTTTT--TGCTGGAATTTTTTTGCTGGAAA
* *
110110946 TTTTTTGCTGCTGGAATTTTTTTGCTAGAAAA
1 TTTTTT-TTGCTGGAATTTTTTTGCT-GGAAA
110110978 TTTTTTTTGCT
1 TTTTTTTTGCT
110110989 TCCCGCCCCT
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
29 14 0.15
30 11 0.12
31 30 0.33
32 29 0.32
33 8 0.09
ACGTcount: A:0.16, C:0.09, G:0.19, T:0.56
Consensus pattern (30 bp):
TTTTTTTTGCTGGAATTTTTTTGCTGGAAA
Found at i:110110983 original size:48 final size:45
Alignment explanation
Indices: 110110854--110110989 Score: 141
Period size: 48 Copynumber: 2.9 Consensus size: 45
110110844 TTTTTTGGTT
* * * *
110110854 TTTTTTTTGCTGGAAATTTTTTGCTGGAATTTTCTTTGC-TGGAA
1 TTTTTTCTGCTGGAATTTTTTTGCTGGAATTTTTTTTGCTTGAAA
*
110110898 TTTTTTTTGCTGGAAATTTTTTTGCTGCTGGAA-TTTTTTTGCTTGAAA
1 TTTTTTCTGCTGG-AA-TTTTTT--TGCTGGAATTTTTTTTGCTTGAAA
*
110110946 TTTTTTGCTGCTGGAATTTTTTTGCTAGAAAATTTTTTTTGCTT
1 TTTTTT-CTGCTGGAATTTTTTTGCT-G-GAATTTTTTTTGCTT
110110990 CCCGCCCCTT
Statistics
Matches: 78, Mismatches: 5, Indels: 14
0.80 0.05 0.14
Matches are distributed among these distances:
44 13 0.17
45 6 0.08
46 6 0.08
47 16 0.21
48 31 0.40
49 6 0.08
ACGTcount: A:0.16, C:0.09, G:0.18, T:0.57
Consensus pattern (45 bp):
TTTTTTCTGCTGGAATTTTTTTGCTGGAATTTTTTTTGCTTGAAA
Found at i:110115295 original size:130 final size:131
Alignment explanation
Indices: 110115026--110115379 Score: 421
Period size: 130 Copynumber: 2.7 Consensus size: 131
110115016 ATTCGATTGC
* ** * * * * * *
110115026 TTTGAGCAAATGAGAAATCACAACCCAGCACGATAGGGTATGATTCCCGAATTGTCAAACACCGA
1 TTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCCGAATTGTCAAATATCGA
** * * *
110115091 GTATTACCTTCGTTTTAAAAGATTTTTAGAAGACCTGAGTGAAATTTTGAAGGGATATTTGATTA
66 ACATCACCTTCGTTTTAAAAGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTTGATTA
110115156 T
131 T
* *
110115157 TTTAAGCAAACGAGAAATTGCGACCCAACACGTTAGGGCACGATTCCACGAATTGTCAAATATCG
1 TTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC-CGAATTGTCAAATATCG
* ** *
110115222 AACATCGCCTTC-TTTTAAGTGA-TTTTAAAATACATGAGTGAAATTTTGAAGGGATATTTGATT
65 AACATCACCTTCGTTTTAAAAGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTTGATT
110115285 AT
130 AT
* *
110115287 TTTGAGCAAACGAAAAATTGCAACTCAACACGTTAGGGCACGATTCCGCGAATTGTCAAATATC-
1 TTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC-CGAATTGTCAAATATCG
*
110115351 AA-ATCTCGTCTTCGTTTT-AAAGAATTTTT
65 AACATCAC--CTTCGTTTTAAAAG-ATTTTT
110115380 GGATGAATGA
Statistics
Matches: 189, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
128 4 0.02
129 2 0.01
130 105 0.56
131 51 0.27
132 27 0.14
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (131 bp):
TTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCCGAATTGTCAAATATCGA
ACATCACCTTCGTTTTAAAAGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTTGATTA
T
Found at i:110121610 original size:126 final size:125
Alignment explanation
Indices: 110121392--110121626 Score: 346
Period size: 126 Copynumber: 1.9 Consensus size: 125
110121382 TTCGTGAGCG
* *
110121392 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCTAGAAGCTTAATAAAAATAAACT
1 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCAAGAAGCTTAACAAAAATAAACT
* *
110121457 TATCTGGCACTCAAATTGATGAAGTGTCCTTACCTTTGGACTCTCGATCCCTTCGTGAATT
66 TATCTGGCACTCAAATTGAAGAAGTGTCCTT-CCTTTCGACTCTCGATCCCTTCGTGAATT
* * * * *
110121518 GGATCTTAGTTATTGCCCAATGGTCAAGTTTCC-AGAAATCCCAAGAAGCTTAACAAAATTAAAC
1 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAG-AATCCCAAGAAGCTTAACAAAAATAAAC
* *
110121582 TTATCTGGCACTCAAATTGAAGAGGTGTCCTTGCTTTCGACTCTC
65 TTATCTGGCACTCAAATTGAAGAAGTGTCCTTCCTTTCGACTCTC
110121627 TATGTAATCT
Statistics
Matches: 97, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
125 13 0.13
126 84 0.87
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (125 bp):
GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCAAGAAGCTTAACAAAAATAAACT
TATCTGGCACTCAAATTGAAGAAGTGTCCTTCCTTTCGACTCTCGATCCCTTCGTGAATT
Found at i:110122859 original size:15 final size:15
Alignment explanation
Indices: 110122839--110122870 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
110122829 ATCCTTCACG
110122839 ATGAAGAAGAAGATT
1 ATGAAGAAGAAGATT
*
110122854 ATGAAGGAGAAGATT
1 ATGAAGAAGAAGATT
110122869 AT
1 AT
110122871 CACGTAGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.22
Consensus pattern (15 bp):
ATGAAGAAGAAGATT
Found at i:110126394 original size:21 final size:21
Alignment explanation
Indices: 110126368--110126408 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
110126358 ATCTGCTCAA
* *
110126368 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
*
110126389 ACTCCATCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
110126409 TTGCCCGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:110132885 original size:32 final size:31
Alignment explanation
Indices: 110132849--110132909 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
110132839 GATTTTTGAA
*
110132849 AAAGAATTATAACTATTTAAATAAT-ATTATTT
1 AAAGAATTATAA-TA-TTAAAAAATAATTATTT
*
110132881 AAAGAGTTATAATATTAAAAAATAATTAT
1 AAAGAATTATAATATTAAAAAATAATTAT
110132910 GTGTTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 8 0.31
31 7 0.27
32 11 0.42
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (31 bp):
AAAGAATTATAATATTAAAAAATAATTATTT
Found at i:110134478 original size:21 final size:21
Alignment explanation
Indices: 110134452--110134506 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
110134442 ATGAGTTTTT
* *
110134452 TTGTTTCATGACTTTTAAACA
1 TTGTTTCATAAATTTTAAACA
*
110134473 TTGTTTGATAAATTTTAAAC-
1 TTGTTTCATAAATTTTAAACA
*
110134493 TGAGTTTCATAAAT
1 T-TGTTTCATAAAT
110134507 ATTTCTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (21 bp):
TTGTTTCATAAATTTTAAACA
Found at i:110134590 original size:28 final size:25
Alignment explanation
Indices: 110134558--110134622 Score: 62
Period size: 26 Copynumber: 2.6 Consensus size: 25
110134548 TGTCACTATT
*
110134558 TTAAATATAAAATATATAATTTTATA
1 TTAAATATAAAATAT-TAATTATATA
* *
110134584 TCGTAAAAATTAAA-ATTAATTATATA
1 T--TAAATATAAAATATTAATTATATA
110134610 TTAAATA-AAAATA
1 TTAAATATAAAATA
110134623 AAATTCAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
23 3 0.10
24 6 0.19
26 11 0.35
27 2 0.06
28 9 0.29
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (25 bp):
TTAAATATAAAATATTAATTATATA
Found at i:110140005 original size:21 final size:20
Alignment explanation
Indices: 110139981--110140040 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
110139971 GGTCTCATTT
*
110139981 TCATCTCTTTTTGTCATATTA
1 TCATCTCATTTT-TCATATTA
*
110140002 TCATC-CATTTTTCAGTTTTA
1 TCATCTCATTTTTCA-TATTA
*
110140022 TCATTTCATTTTTCATATT
1 TCATCTCATTTTTCATATT
110140041 CCCATACTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
19 3 0.09
20 16 0.48
21 14 0.42
ACGTcount: A:0.20, C:0.18, G:0.03, T:0.58
Consensus pattern (20 bp):
TCATCTCATTTTTCATATTA
Found at i:110142105 original size:798 final size:798
Alignment explanation
Indices: 110140500--110145361 Score: 9541
Period size: 798 Copynumber: 6.1 Consensus size: 798
110140490 ACCAAAATTC
* * * * * * *
110140500 AGATATTAA-ACTTCGTACTT-AATTCTTATTGACAGTTAACTTGTTATTGGCTGGTTTTTTTTA
1 AGATATTAAGA-TTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGG---TTTTGA
*
110140563 ATTCACAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTG
62 A-TCATAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTG
110140628 GTCTCTCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTG
126 GTCTCTCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTG
110140693 TGAGATTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTT
191 TGAGATTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTT
110140758 GAGAATGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCT
256 GAGAATGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCT
*
110140823 CAATTTGTTTTACTGAATGCTTACTTTATGTAAGTGTTCGAACTGATATTTGGTGACAATGCAAG
321 CAATTTGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAG
110140888 ATGTCAACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAA
386 ATGTCAACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAA
110140953 TTCAGTCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCAT
451 TTCAGTCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCAT
110141018 ATAATGAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCC
516 ATAATGAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCC
110141083 AGAATTTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGT
581 AGAATTTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGT
110141148 TTTCATTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATC
646 TTTCATTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATC
110141213 TTGGATTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTAT
711 TTGGATTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTAT
110141278 GTTGTTTGAGCATTGCGGTGAGT
776 GTTGTTTGAGCATTGCGGTGAGT
110141301 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
1 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
110141366 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
66 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
110141431 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
131 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
110141496 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
196 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
110141561 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
261 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
110141626 TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
326 TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
110141691 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
391 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
110141756 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
456 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
110141821 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
521 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
110141886 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
586 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
110141951 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
651 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
110142016 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
716 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
110142081 TTGAGCATTGCGGTGAGT
781 TTGAGCATTGCGGTGAGT
110142099 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
1 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
110142164 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
66 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
110142229 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
131 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
110142294 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
196 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
110142359 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
261 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
110142424 TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
326 TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
110142489 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
391 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
110142554 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
456 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
110142619 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
521 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
110142684 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
586 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
110142749 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
651 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
110142814 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
716 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
110142879 TTGAGCATTGCGGTGAGT
781 TTGAGCATTGCGGTGAGT
110142897 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
1 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
110142962 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
66 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
110143027 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
131 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
110143092 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
196 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
110143157 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
261 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
*
110143222 TGTTTTACTGAATGCTTACTTTATGTAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
326 TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
110143287 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
391 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
110143352 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
456 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
110143417 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
521 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
110143482 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
586 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
110143547 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
651 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
110143612 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
716 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
110143677 TTGAGCATTGCGGTGAGT
781 TTGAGCATTGCGGTGAGT
110143695 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
1 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
110143760 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
66 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
110143825 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
131 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
110143890 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
196 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
110143955 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
261 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
110144020 TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
326 TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
110144085 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
391 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
110144150 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
456 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
110144215 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
521 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
110144280 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
586 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
110144345 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
651 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
110144410 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
716 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
110144475 TTGAGCATTGCGGTGAGT
781 TTGAGCATTGCGGTGAGT
110144493 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
1 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
110144558 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
66 TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
110144623 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
131 TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
110144688 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
196 TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
110144753 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
261 TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
*
110144818 TGTTTTACTGAATGCTTACTTTATGTAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
326 TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
110144883 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
391 AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
110144948 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
456 TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
110145013 GAATTTCAGCATCCTCACC-TTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
521 GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
110145077 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
586 TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
110145142 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
651 TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
110145207 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATATGTTACTTACTGCCTCTTATGTT
716 TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTG--TATGTTACTTACTGCCTCTTATGTT
110145272 GTTTGAGCATTGCGGTGAGT
779 GTTTGAGCATTGCGGTGAGT
110145292 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
1 AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
110145357 TAGGA
66 TAGGA
110145362 TAAGTGGAGC
Statistics
Matches: 4045, Mismatches: 12, Indels: 10
0.99 0.00 0.00
Matches are distributed among these distances:
797 213 0.05
798 3664 0.91
799 121 0.03
801 17 0.00
802 30 0.01
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (798 bp):
AGATATTAAGATTCATACTTGAATTCTTTTTGGCAGTTGACTTGTTATTAGTTGGTTTTGAATCA
TAGGACCATTGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCGGCATCGGTGTCATCTGGTCTC
TCAATACTTGCTGCATTTTCCTTCAATGATATCTTGATTCATAGAAAGATTGGTTATTTGTGAGA
TTGGTTTTTCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGAATGACAGATCTTTGAGAA
TGCCACTTCTGAATTGGAGCTTTAGCCATACAAGGAGGAACACCTGACCTGTAAGACCCTCAATT
TGTTTTACTGAATGCTTACTTTATGCAAGTGTTCGAACTGATATTTGGTGACAATGCAAGATGTC
AACAGATTTGTCAACACAAATCCAAAGTAATCTTTTGAGGCCCTTTCTGGGTTCTGGCAATTCAG
TCTTGGTGGATAAGTAAGTTACCTATGACTTTTGACTTATTATTATGATTTTAGGTTCATATAAT
GAATTTCAGCATCCTCACCTTTTTTTTTTCACATATTTATCAATGGGATTATATAAATCCAGAAT
TTACAAGAGGTCTCAAAACTTTGGTATGAACAAATGGAGCTGGAGGCAACCTTTGACAGTTTTCA
TTCTCAAGCTAGATTGAGTTAGTTTCATGGTAGAGCCGTTGGAGTTGATATTTTCTTATCTTGGA
TTTTAATTATCATATCAGTTTGGGCTGAAATTTCTTTGTATGTTACTTACTGCCTCTTATGTTGT
TTGAGCATTGCGGTGAGT
Found at i:110148389 original size:28 final size:28
Alignment explanation
Indices: 110148357--110148411 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
110148347 TATGAGTATG
*
110148357 TGTATGTATAT-TCTTTTAAAATTCATTA
1 TGTATGTATATAT-TTTTAAAACTCATTA
110148385 TGTATGTATATATTTTTAAAACTCATT
1 TGTATGTATATATTTTTAAAACTCATT
110148412 TGCATATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 24 0.96
29 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (28 bp):
TGTATGTATATATTTTTAAAACTCATTA
Found at i:110161846 original size:428 final size:428
Alignment explanation
Indices: 110160259--110165628 Score: 8654
Period size: 427 Copynumber: 12.6 Consensus size: 428
110160249 TACTCTTTTT
* * * *
110160259 TATTCATATAATAACATTTTATTTAAATTTTTTTAAAAATAAAAAT-AAAGATTTTATTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
*
110160323 AGATAAGTGGCATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
110160388 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGATG
131 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGATG
* * *
110160453 CTTAAAAGTAATAGGCTTATTTTTTCTGTATAGGACTTTGTTAATTTAAGGAAAATTAACTTCAA
196 CTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCAA
* * ** *
110160518 TGGGTGCATGAGTTTAACCAAGATACCTAATC-TTCTAAGAGCCATCAACCTTGAATACCTTTAT
261 TGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTC-AAGAGCCATCAACCTTGAATACCTTTAT
* *
110160582 TGCAGTGACTGTAAAAGTTTGGTTGAACTTTGGAATGGAGATGATTGTGTGGTAAGTATTTTCAT
325 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAT
*
110160647 A----TTTTTAAAAAAAAAATTATATTTTGATGTATAAA
390 ACTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
* *
110160682 TATTCATATGATAATATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATGTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* * * *
110160747 AGATAAGTGATATCTTTTGATTTATTAATTGTGGGTGAATTTTCACACCCTATACATTAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
* * *
110160812 AATTCTTATTTTTTTATATTATTATAATTATTTCTTTCTTTTCCTTTTTTTACTAAATAGTTGAT
131 AATTTTTA-TTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGAT
* * *
110160877 GCTTAAAAGTAATACGCTTATTTTTTCTGTACAAGATTTTGTTAATTTAAGGGAAATTAACTTCA
195 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
* * * * *
110160942 ATGGATGTGTGAGTTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAATCTTAAATACCTTTAT
260 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
*
110161007 TGCAGTGACTGTAAAAGTTT-GATTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCG
325 TGCAGTGACTGTAAAAGTTTAG-TTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCA
110161071 TAC---TTTTT--AAAAAAAATTATATTTTGATGTATAAA
389 TACTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
*
110161106 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAGTAAATATAAAAGATTTTATTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
** * * *
110161171 ATTTAAGTGACATTGTTTGATTTATTAATTGTGTGTGAATTTTTACACCCTATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
* *
110161236 AATTTTTATTTTTTTTTATAGTATTATAATTATATCTTTCCTTTCCATTTTTTACTAAATAGTTG
131 AATTTTTA---TTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTG
* * *
110161301 ATGCTTAAAAGTAATACGTTTATTTTTTCTGTACAGGATTTTGTTAATTTAAGGGAAATTAACTT
193 ATGCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTT
* * * *
110161366 TAATGGGTGCGTGAGTTTAAGGAAGATACCTAATCTTTCAAGAGCTATCAACCTTGAATACCTTT
258 CAATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTT
* * *
110161431 ATTGCAGTGACTGTAAAAGTTTGGTTGAAATTTGGAATGAAGATGATTGTGTGGTATGTATTTTC
323 ATTGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTC
*
110161496 GTACTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
388 ATACTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
* *
110161537 TATTCATATGATAACATTTTATTTAAAGTTTTCAAAAAATAAATATAAAAGAATTTATTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
110161602 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
* *
110161667 AA-TTTTATTTTTTTATAGTTTTATAATTATTTATTTCCTTTCCTTTTTTTACTAAATAGTTGAT
131 AATTTTTA-TTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGAT
* * * *
110161731 GCTTAAAAGTAATAGGCTTATTTTTTTTGTACAGGATTTTGTTAATTTAAGGAAAATTAACTTCA
195 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
* * * *
110161796 ATGGGTGTGTGAGTTTAACGAAGATACTTAATTTTTCAAGAGCCATCAACCTTGAATACCTTTAT
260 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
* * *
110161861 TGCAGTGACTGTAAAAGTTTGGTTGAACTTTGGAACGGAGATGATTGTGTGGTAAGTATTTTCA-
325 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAT
*
110161925 AATTTTTTTTG-AAAAAAAATTATATTTTGATGTATAAA
390 ACTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
*
110161963 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATGTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* * * * *
110162028 AGATAAGTGACATCTTTTGATTTATTAATTGTGAGTGAATTTTCACACCTTATACATTAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
*
110162093 AATTTTTATTTTTTATAGTATTATAATTATTTCTTT-CTTTCCCTTTTTTTATTAAATAGTTGAT
131 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTT-CCTTTTTTTACTAAATAGTTGAT
* *
110162157 GCTTAAAAGTAATACGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAATTTCA
195 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
*
110162222 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCTATCAACCTTGAATACCTTTAT
260 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
110162287 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAT
325 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAT
***
110162352 ACTTTTTTTTTTGAAAAAAATTATATTTTGATGTATAAA
390 ACTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
* * *
110162391 TATTCATATGATAACATTTTATTTAAAGCTTTCAAAAAA-AAATATAAAAGATTTTATGTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* * ** * * *
110162455 AGATAAGTGACATCTTTTGATTTATTAAATGTAAGTGAATTTTCACACCTTATACATTAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
* *
110162520 AGTTTTTATTTTTTATGGTATTATAATTATTTCTTT-CTTTCCCTTTTTTTACTAAATAGTTGAT
131 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTT-CCTTTTTTTACTAAATAGTTGAT
110162584 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
195 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
110162649 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
260 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
*
110162714 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAA
325 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAT
*
110162779 ATTTTTTTTTTG-AAAAAAAATTATATTTTGATGTATAAA
390 A-CTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
*
110162818 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGAATTTATTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* *
110162883 AGATAAGTGGCATCGTTTGATTTTTTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
*
110162948 AATTTTTATTTTTTTATAGTATTATAATTATTTCTTTCCTTTCCATTTTTTACTAAATAGTTGAT
131 AATTTTTA-TTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGAT
110163013 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
195 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
*
110163078 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTCTAT
260 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
*
110163143 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAA
325 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAT
110163208 ACTTTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
390 AC--TTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
*
110163249 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGAATTTATTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* *
110163314 AGATAAGTGGCATCGTTTGATTTTTTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
110163379 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGATG
131 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGATG
110163444 CTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCAA
196 CTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCAA
*
110163509 TGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCTATCAACCTTGAATACCTTTATT
261 TGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTATT
110163574 GCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCATA
326 GCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCATA
110163639 CTTTTTTTTTG-AAAAAAAATTATATTTTGATGTATAAA
391 C-TTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
* *
110163677 TATTCATATGATAACATTTTATTTAAAGTTTTCAAAAAA-AAATATAAAAGATTTTATGTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* * ** * * *
110163741 AGATAAGTGACATCTTTTGATTTATTAAATGTAAGTGAATTTTCACACCTTATACATTAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
110163806 AATTTTTATTTTTTATAGTATTATAATTATTTCTTT-CTTTCCCTTTTTTTACTAAATAGTTGAT
131 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTT-CCTTTTTTTACTAAATAGTTGAT
110163870 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
195 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
110163935 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
260 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
*
110164000 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAA
325 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAT
110164065 AC-TTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
390 ACTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
*
110164103 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGAATTTATTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* *
110164168 AGATAAGTGGCATCGTTTGATTTTTTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
*
110164233 AATTTTTATTTTTTTATAGTATTATAATTATTTCTTTCCTTTCCATTTTTTACTAAATAGTTGAT
131 AATTTTTA-TTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGAT
110164298 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
195 GCTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCA
110164363 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
260 ATGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTAT
*
110164428 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAA
325 TGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCAT
110164493 ACTTTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
390 AC--TTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
*
110164534 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGAATTTATTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* *
110164599 AGATAAGTGGCATCGTTTGATTTTTTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
110164664 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTTCC-TTTTTTACTAAATAGTTGATG
131 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGATG
110164728 CTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCAA
196 CTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCAA
* * *
110164793 TGGGTGCTTGAATTTAAGGAAGATACTTAATCTTCCAAGAGCCATCAACCTCGAATACCTTTATT
261 TGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTATT
* *
110164858 GCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGAAGATGATTGTGTGGTGTGTATTTTCATA
326 GCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCATA
110164923 CCTTTTTTTTG--AAAAAAATTATATTTTGATGTATAAA
391 -CTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
* *
110164960 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGAATTTACTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* * *
110165025 AGATAAGTGGCATCGTTTGATTTATTAATTGTGTGTGAATTTTCACACCCTATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
* * * * *
110165090 AATTTTTATTTTTTATGGTATTATAAATATTTCTTTCCTTTCCATTTTTTGCTAAATAATTGATG
131 AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGATG
** * *
110165155 CTTAAAAGTAATACACTTATTTTTTCTGTACAGGATTTTTTTAATTTAAGGGAAATTAACTTCAA
196 CTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCAA
* * *
110165220 TGGGTGCGTGAGA-TTAAGGAAGGTAAC-TAATCTTTCAAGAGCCATCAACTTGTGAA-ATCTTT
261 TGGGTGCGTGA-ATTTAAGGAAGAT-ACTTAATCTTTCAAGAGCCATCAACCT-TGAATA-CCTT
** * * * * * * *
110165282 TATTGCTCTAACTGTAGAAGTTTGGTTGAACCTTGAAATGGAGATGATTGTATGGTATGCATTTT
322 TATTGCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTT
** *
110165347 CATAC-TTTTTTAAAAAAAAAAATTATATTTTGATTTATAAA
387 CATACTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
* * * *
110165388 TATTCATATAATAACATTTTTTTTAAAGTTTATAAAAAATATATATAAAAGATTTTATTTTATTT
1 TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
* * * * ***
110165453 AGAAAAGTGACATCATTTGATTTATTAATTATGGGTGAATTTTCACACTGGATACATCAAATATA
66 AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
* *
110165518 AATTTTTATTTTTTATTA-TATTATAATTATTTATTTCCTTT--TTATTTTTACT--A-AGCTGA
131 AATTTTTATTTTTTA-TAGTATTATAATTATTTCTTTCCTTTCCTT-TTTTTACTAAATAGTTGA
* ** * *
110165577 TGCTTGAAAGTAATACAAC-TATTTTTTCTGTACAGGGCTTTTGTTAATTTAA
194 TGCTTAAAAGTAATA-TGCTTATTTTTTCTGTATA-GGATTTTGTTAATTTAA
110165629 CATCCTTGTA
Statistics
Matches: 4666, Mismatches: 237, Indels: 86
0.94 0.05 0.02
Matches are distributed among these distances:
423 41 0.01
424 271 0.06
425 259 0.06
426 894 0.19
427 980 0.21
428 954 0.20
429 474 0.10
430 303 0.06
431 490 0.11
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (428 bp):
TATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTATTTTATTT
AGATAAGTGACATCGTTTGATTTATTAATTGTGGGTGAATTTTAACACCCTATACATCAAATATA
AATTTTTATTTTTTATAGTATTATAATTATTTCTTTCCTTTCCTTTTTTTACTAAATAGTTGATG
CTTAAAAGTAATATGCTTATTTTTTCTGTATAGGATTTTGTTAATTTAAGGGAAATTAACTTCAA
TGGGTGCGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAACCTTGAATACCTTTATT
GCAGTGACTGTAAAAGTTTAGTTGAACTTTGGAATGGAGATGATTGTGTGGTATGTATTTTCATA
CTTTTTTTTGAAAAAAAAATTATATTTTGATGTATAAA
Found at i:110171477 original size:19 final size:19
Alignment explanation
Indices: 110171453--110171492 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
110171443 TCATAATTAA
110171453 AATAAGCAAATTGGTCAGC
1 AATAAGCAAATTGGTCAGC
110171472 AATAAGCAAATTGGTCAGC
1 AATAAGCAAATTGGTCAGC
110171491 AA
1 AA
110171493 GTGCCTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (19 bp):
AATAAGCAAATTGGTCAGC
Found at i:110174438 original size:15 final size:16
Alignment explanation
Indices: 110174402--110174431 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
110174392 ACATATCATT
110174402 TATTTCATTATATCAA
1 TATTTCATTATATCAA
110174418 TATTTCA-TATATCA
1 TATTTCATTATATCA
110174432 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:110175427 original size:49 final size:49
Alignment explanation
Indices: 110175355--110175536 Score: 213
Period size: 49 Copynumber: 3.7 Consensus size: 49
110175345 CTGGTACGCA
**
110175355 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCCGGTACACG
* * * * * * *
110175404 TAGTAACCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACA---ATCCGGTACACG
* * **
110175455 TAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCCGGTACACG
110175504 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
110175537 TCACAATAGC
Statistics
Matches: 108, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
48 3 0.03
49 69 0.64
51 35 0.32
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCCGGTACACG
Found at i:110175520 original size:100 final size:100
Alignment explanation
Indices: 110175347--110175534 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 100
110175337 GGAGCTATCT
* *
110175347 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCTAGTACACGTAGTAACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCAGTACACGTAGTAACC
110175412 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* ** * *
110175447 GGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCAGTACACGTAGTAACC
*
110175512 TGCACTTAGTACTACACATGTGA
66 TGCACTTAGTACTACACACGTGA
110175535 CCTCACAATA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCAGTACACGTAGTAACC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:110181939 original size:36 final size:36
Alignment explanation
Indices: 110181889--110181981 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
110181879 TACGATCGTT
110181889 TACAGTACTATTCACGTATACGACACTATTCACGTA
1 TACAGTACTATTCACGTATACGACACTATTCACGTA
* *
110181925 TATAGTACTATTCACATATACGACACTATTCACGTA
1 TACAGTACTATTCACGTATACGACACTATTCACGTA
110181961 TACAGTACTATTCACGTATAC
1 TACAGTACTATTCACGTATAC
110181982 AGTAGTTGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (36 bp):
TACAGTACTATTCACGTATACGACACTATTCACGTA
Found at i:110181982 original size:18 final size:18
Alignment explanation
Indices: 110181889--110181985 Score: 126
Period size: 18 Copynumber: 5.4 Consensus size: 18
110181879 TACGATCGTT
110181889 TACAGTACTATTCACGTA
1 TACAGTACTATTCACGTA
*
110181907 TAC-GACACTATTCACGTA
1 TACAG-TACTATTCACGTA
* *
110181925 TATAGTACTATTCACATA
1 TACAGTACTATTCACGTA
*
110181943 TAC-GACACTATTCACGTA
1 TACAG-TACTATTCACGTA
110181961 TACAGTACTATTCACGTA
1 TACAGTACTATTCACGTA
110181979 TACAGTA
1 TACAGTA
110181986 GTTGGGATTG
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
17 2 0.03
18 63 0.94
19 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (18 bp):
TACAGTACTATTCACGTA
Found at i:110189877 original size:25 final size:25
Alignment explanation
Indices: 110189843--110189899 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
110189833 AATATTAATG
110189843 CAGAATTTGACAGTTGCTCGTATCT
1 CAGAATTTGACAGTTGCTCGTATCT
110189868 CAGAATTTGACAGTTGCTCGTATCT
1 CAGAATTTGACAGTTGCTCGTATCT
110189893 CAGAATT
1 CAGAATT
110189900 CATGGAATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (25 bp):
CAGAATTTGACAGTTGCTCGTATCT
Found at i:110199468 original size:24 final size:24
Alignment explanation
Indices: 110199424--110199470 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
110199414 CGGTAATGTT
*
110199424 AATTTAAATAAAATTTCAATTTAA
1 AATTTAAATAAAATTTAAATTTAA
110199448 AATTGTAAATAAAA-TTAAATTTA
1 AATT-TAAATAAAATTTAAATTTA
110199471 TGGTACATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
AATTTAAATAAAATTTAAATTTAA
Found at i:110202908 original size:36 final size:36
Alignment explanation
Indices: 110202857--110202967 Score: 195
Period size: 36 Copynumber: 3.1 Consensus size: 36
110202847 TATAATGGTC
* * *
110202857 TTGGTGCTGGAAATTTAAATGCGAATTTGACTGGTT
1 TTGGTGCTGGGAATTTAAATGCAAATTTGACTGGGT
110202893 TTGGTGCTGGGAATTTAAATGCAAATTTGACTGGGT
1 TTGGTGCTGGGAATTTAAATGCAAATTTGACTGGGT
110202929 TTGGTGCTGGGAATTTAAATGCAAATTTGACTGGGT
1 TTGGTGCTGGGAATTTAAATGCAAATTTGACTGGGT
110202965 TTG
1 TTG
110202968 CACCTATTAG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 72 1.00
ACGTcount: A:0.24, C:0.08, G:0.30, T:0.38
Consensus pattern (36 bp):
TTGGTGCTGGGAATTTAAATGCAAATTTGACTGGGT
Found at i:110203701 original size:36 final size:36
Alignment explanation
Indices: 110203652--110203726 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
110203642 GAACTTTAGA
110203652 ATAAGACTACTAAAGGTGATGTGTTTTCCTTGTGGC
1 ATAAGACTACTAAAGGTGATGTGTTTTCCTTGTGGC
*
110203688 ATAAGACTGCTAAAGGTGATGTGTTTTCCTTGTGGC
1 ATAAGACTACTAAAGGTGATGTGTTTTCCTTGTGGC
110203724 ATA
1 ATA
110203727 GACGTCTTGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (36 bp):
ATAAGACTACTAAAGGTGATGTGTTTTCCTTGTGGC
Found at i:110207194 original size:52 final size:52
Alignment explanation
Indices: 110207127--110207235 Score: 209
Period size: 52 Copynumber: 2.1 Consensus size: 52
110207117 GCAACAGATC
*
110207127 TTATAAAAGAGGAGGGGTTGCACCACATTGAAGCATATTACCCCAATATAAT
1 TTATTAAAGAGGAGGGGTTGCACCACATTGAAGCATATTACCCCAATATAAT
110207179 TTATTAAAGAGGAGGGGTTGCACCACATTGAAGCATATTACCCCAATATAAT
1 TTATTAAAGAGGAGGGGTTGCACCACATTGAAGCATATTACCCCAATATAAT
110207231 TTATT
1 TTATT
110207236 GGTCGTCCAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (52 bp):
TTATTAAAGAGGAGGGGTTGCACCACATTGAAGCATATTACCCCAATATAAT
Found at i:110208161 original size:35 final size:35
Alignment explanation
Indices: 110208117--110208185 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
110208107 CTCTAAAACG
110208117 AAAAAAAACAAAAAAGAATAGGAATCAGCTAGCAA
1 AAAAAAAACAAAAAAGAATAGGAATCAGCTAGCAA
*
110208152 AAAAAAAACAAAAAAGAATAGGTATCAGCTAGCA
1 AAAAAAAACAAAAAAGAATAGGAATCAGCTAGCA
110208186 TTATTGGCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.64, C:0.12, G:0.14, T:0.10
Consensus pattern (35 bp):
AAAAAAAACAAAAAAGAATAGGAATCAGCTAGCAA
Found at i:110212140 original size:17 final size:19
Alignment explanation
Indices: 110212120--110212158 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 19
110212110 AAGTGAATTG
110212120 AAATTACG-AAATT-AAAT
1 AAATTACGAAAATTAAAAT
110212137 AAATTACGAAAATTAAAAT
1 AAATTACGAAAATTAAAAT
110212156 AAA
1 AAA
110212159 AATATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (19 bp):
AAATTACGAAAATTAAAAT
Found at i:110212900 original size:10 final size:10
Alignment explanation
Indices: 110212873--110212910 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
110212863 TGAAATTCTA
*
110212873 AAAGATAAAT
1 AAAGATAATT
110212883 ACAA-ATAATT
1 A-AAGATAATT
110212893 AAAGATAATT
1 AAAGATAATT
110212903 AAAGATAA
1 AAAGATAA
110212911 ATGAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:110214582 original size:25 final size:25
Alignment explanation
Indices: 110214548--110214596 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
110214538 AATATCCTAA
110214548 TAATAAAT-AATAAAATAAAATAAAG
1 TAATAAATAAAT-AAATAAAATAAAG
110214573 TAATAAATAAATAAATAAAATAAA
1 TAATAAATAAATAAATAAAATAAA
110214597 AGTTGGGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (25 bp):
TAATAAATAAATAAATAAAATAAAG
Found at i:110218316 original size:10 final size:10
Alignment explanation
Indices: 110218289--110218338 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
110218279 TGAAATTCTA
110218289 AAAGATAAAT
1 AAAGATAAAT
110218299 ACAA-ATAAAT
1 A-AAGATAAAT
*
110218309 AAAGATAATT
1 AAAGATAAAT
*
110218319 AAAGATATAT
1 AAAGATAAAT
110218329 GAAA-ATAAAT
1 -AAAGATAAAT
110218339 CCTAAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 2 0.06
10 26 0.79
11 5 0.15
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:110221567 original size:167 final size:167
Alignment explanation
Indices: 110221291--110221624 Score: 650
Period size: 167 Copynumber: 2.0 Consensus size: 167
110221281 CCAAACACCT
*
110221291 TCAAATGGGAAACGGATGGTTTGAGCCCATACCATGCCTCAAAGGGTGTTTTGTCCTTTACAGCT
1 TCAAATGGGAAACGGATGGTTTGAGCCCATACCATGCCTCAAAAGGTGTTTTGTCCTTTACAGCT
110221356 CTTGTAGGAAGCTTGTTCAATAGGTAAACTGAGGTGTTGACAGCTTCTGCCCAAAATTTGCTTGG
66 CTTGTAGGAAGCTTGTTCAATAGGTAAACTGAGGTGTTGACAGCTTCTGCCCAAAATTTGCTTGG
110221421 AAGCTTGCTTTGAAACAACAAACATCTGGCCATATTC
131 AAGCTTGCTTTGAAACAACAAACATCTGGCCATATTC
110221458 TCAAATGGGAAACGGATGGTTTGAGCCCATACCATGCCTCAAAAGGTGTTTTGTCCTTTACAGCT
1 TCAAATGGGAAACGGATGGTTTGAGCCCATACCATGCCTCAAAAGGTGTTTTGTCCTTTACAGCT
110221523 CTTGTAGGAAGCTTGTTCAATAGGTAAACTGAGGTGTTGACAGCTTCTGCCCAAAATTTGCTTGG
66 CTTGTAGGAAGCTTGTTCAATAGGTAAACTGAGGTGTTGACAGCTTCTGCCCAAAATTTGCTTGG
*
110221588 AAGCTTGCTTTGAAACAACAGACATCTGGCCATATTC
131 AAGCTTGCTTTGAAACAACAAACATCTGGCCATATTC
110221625 ATCACTGTTC
Statistics
Matches: 165, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
167 165 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (167 bp):
TCAAATGGGAAACGGATGGTTTGAGCCCATACCATGCCTCAAAAGGTGTTTTGTCCTTTACAGCT
CTTGTAGGAAGCTTGTTCAATAGGTAAACTGAGGTGTTGACAGCTTCTGCCCAAAATTTGCTTGG
AAGCTTGCTTTGAAACAACAAACATCTGGCCATATTC
Found at i:110224483 original size:34 final size:34
Alignment explanation
Indices: 110224440--110224507 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
110224430 GGGCAAAATG
110224440 TCAGGCCAAAATGTCAAAGGGCCCAATTTGTAAA
1 TCAGGCCAAAATGTCAAAGGGCCCAATTTGTAAA
110224474 TCAGGCCAAAATGTCAAAGGGCCCAATTTGTAAA
1 TCAGGCCAAAATGTCAAAGGGCCCAATTTGTAAA
110224508 CATCTTACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (34 bp):
TCAGGCCAAAATGTCAAAGGGCCCAATTTGTAAA
Found at i:110224499 original size:17 final size:17
Alignment explanation
Indices: 110224445--110224499 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
110224435 AAATGTCAGG
110224445 CCAAAATGTCAAAGGGC
1 CCAAAATGTCAAAGGGC
** *
110224462 CCAATTTGT-AAATCAGG-
1 CCAAAATGTCAAA--GGGC
110224479 CCAAAATGTCAAAGGGC
1 CCAAAATGTCAAAGGGC
110224496 CCAA
1 CCAA
110224500 TTTGTAAACA
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
16 5 0.18
17 18 0.64
18 5 0.18
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (17 bp):
CCAAAATGTCAAAGGGC
Found at i:110229838 original size:39 final size:39
Alignment explanation
Indices: 110229783--110229872 Score: 126
Period size: 39 Copynumber: 2.3 Consensus size: 39
110229773 ATTTTATGTG
* * *
110229783 GATGAAGATCAGATTGATGAGACGAGCAATGATGTATCA
1 GATGAAGATCAAATTGAAGAGACGAGCAATGATGCATCA
* *
110229822 GATGAAAATCAAATTGAAGAGACGAGCAGTGATGCATCA
1 GATGAAGATCAAATTGAAGAGACGAGCAATGATGCATCA
*
110229861 CATGAAGATCAA
1 GATGAAGATCAA
110229873 GAAATGTGCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.42, C:0.12, G:0.26, T:0.20
Consensus pattern (39 bp):
GATGAAGATCAAATTGAAGAGACGAGCAATGATGCATCA
Found at i:110231943 original size:18 final size:19
Alignment explanation
Indices: 110231920--110232018 Score: 62
Period size: 19 Copynumber: 5.2 Consensus size: 19
110231910 TTTTTTTTAT
110231920 AAAAATCGTAGA-AAAT-TA
1 AAAAAT-GTAGAGAAATATA
*
110231938 AAAAATGTATAGAAATATA
1 AAAAATGTAGAGAAATATA
* * *
110231957 AAAAATTTATA-AAATTTTA
1 AAAAATGTAGAGAAA-TATA
* *
110231976 TATAATCGTA-AGAAAATTATA
1 AAAAAT-GTAGAG-AAA-TATA
*
110231997 AAAAATATAGAGAAATATA
1 AAAAATGTAGAGAAATATA
110232016 AAA
1 AAA
110232019 TTTGTAAAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
17 4 0.06
18 13 0.20
19 27 0.42
20 7 0.11
21 13 0.20
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (19 bp):
AAAAATGTAGAGAAATATA
Found at i:110231950 original size:19 final size:19
Alignment explanation
Indices: 110231932--110232018 Score: 63
Period size: 19 Copynumber: 4.5 Consensus size: 19
110231922 AAATCGTAGA
110231932 AAAT-TAAAAAATGTATAG
1 AAATATAAAAAATGTATAG
*
110231950 AAATATAAAAAATTTATA-
1 AAATATAAAAAATGTATAG
* * *
110231968 AAATTTTATATAATCGTA-AG
1 AAA-TATAAAAAAT-GTATAG
* *
110231988 AAAATTATAAAAAATATAGAG
1 -AAA-TATAAAAAATGTATAG
110232009 AAATATAAAA
1 AAATATAAAA
110232019 TTTGTAAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
18 7 0.13
19 27 0.50
20 7 0.13
21 13 0.24
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (19 bp):
AAATATAAAAAATGTATAG
Found at i:110232259 original size:9 final size:9
Alignment explanation
Indices: 110232223--110232373 Score: 73
Period size: 10 Copynumber: 16.4 Consensus size: 9
110232213 TTTTGATACA
110232223 TTTTATAATT
1 TTTTATAA-T
*
110232233 TTTTATGA-
1 TTTTATAAT
110232241 TTTT-T-A-
1 TTTTATAAT
110232247 TTTTATAATT
1 TTTTATAA-T
*
110232257 TTTTACAAT
1 TTTTATAAT
* *
110232266 TTCTATAAAAA
1 TT-T-TATAAT
*
110232277 TTTTCTAAT
1 TTTTATAAT
110232286 TTTTAATAAT
1 TTTT-ATAAT
*
110232296 TTTTATATGT
1 TTTTATA-AT
*
110232306 TTTTATCAAAA
1 TTTTAT--AAT
*
110232317 CTTTATAAT
1 TTTTATAAT
*
110232326 TTTTATAAC
1 TTTTATAAT
*
110232335 TTTTATTGA-
1 TTTTA-TAAT
110232344 TTTT-T-AT
1 TTTTATAAT
110232351 TTTTATAATT
1 TTTTATAA-T
110232361 TTTTATAAT
1 TTTTATAAT
110232370 TTTT
1 TTTT
110232374 TTGTCACATA
Statistics
Matches: 110, Mismatches: 16, Indels: 31
0.70 0.10 0.20
Matches are distributed among these distances:
6 6 0.05
7 7 0.06
8 6 0.05
9 37 0.34
10 42 0.38
11 11 0.10
12 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:110232267 original size:24 final size:24
Alignment explanation
Indices: 110232222--110232267 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
110232212 TTTTTGATAC
**
110232222 ATTTTATAATTTTTTATGATTTTT
1 ATTTTATAATTTTTTACAATTTTT
110232246 ATTTTATAATTTTTTACAATTT
1 ATTTTATAATTTTTTACAATTT
110232268 CTATAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
ATTTTATAATTTTTTACAATTTTT
Found at i:110232371 original size:25 final size:25
Alignment explanation
Indices: 110232324--110232373 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
110232314 AAACTTTATA
*
110232324 ATTTTTATAACTTTTATTGATTTTT
1 ATTTTTATAACTTTTATTAATTTTT
*
110232349 ATTTTTATAA-TTTTTTATAATTTTT
1 ATTTTTATAACTTTTAT-TAATTTTT
110232374 TTGTCACATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (25 bp):
ATTTTTATAACTTTTATTAATTTTT
Found at i:110235021 original size:28 final size:28
Alignment explanation
Indices: 110234981--110235036 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
110234971 TACTTTTAGA
110234981 GGACTGAATCAATCCAAGGAATCATGTT
1 GGACTGAATCAATCCAAGGAATCATGTT
110235009 GGACTGAATCAATCCAAGGAATCATGTT
1 GGACTGAATCAATCCAAGGAATCATGTT
110235037 AGACATTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (28 bp):
GGACTGAATCAATCCAAGGAATCATGTT
Found at i:110243986 original size:12 final size:12
Alignment explanation
Indices: 110243969--110243995 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
110243959 TTATGCACTT
110243969 TGTTTTATTTGG
1 TGTTTTATTTGG
110243981 TGTTTTATTTGG
1 TGTTTTATTTGG
110243993 TGT
1 TGT
110243996 GGTTATCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.26, T:0.67
Consensus pattern (12 bp):
TGTTTTATTTGG
Found at i:110252580 original size:15 final size:15
Alignment explanation
Indices: 110252560--110252588 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
110252550 GAAGTGGACT
110252560 TGTCTTCCAACTCAG
1 TGTCTTCCAACTCAG
110252575 TGTCTTCCAACTCA
1 TGTCTTCCAACTCA
110252589 AGGGCAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.34, G:0.10, T:0.34
Consensus pattern (15 bp):
TGTCTTCCAACTCAG
Found at i:110253420 original size:15 final size:15
Alignment explanation
Indices: 110253379--110253421 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
110253369 CTCATTTTCG
*
110253379 ATGAAGAAGAACATT
1 ATGAAGAAGAAGATT
110253394 ATGAAGAAGAAGATT
1 ATGAAGAAGAAGATT
* *
110253409 GTGAAGGAGAAGA
1 ATGAAGAAGAAGA
110253422 CCTTCTCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.51, C:0.02, G:0.30, T:0.16
Consensus pattern (15 bp):
ATGAAGAAGAAGATT
Found at i:110259517 original size:46 final size:45
Alignment explanation
Indices: 110259464--110259631 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 45
110259454 TATTTGGGCA
*
110259464 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TAAGGATGCGAGCG
* * * *
110259510 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAAGGATG---CGA-GCG
* *
110259557 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAAAGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-AAGGATGCGAGCG
* *
110259603 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
110259632 GTTTATGGGC
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
46 60 0.58
47 32 0.31
48 1 0.01
49 1 0.01
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAAGGATGCGAGCG
Found at i:110259619 original size:93 final size:93
Alignment explanation
Indices: 110259460--110259633 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
110259450 GGGATATTTG
* * * *
110259460 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAAAGGATGCGAACGCCCGAACTCGTTGAG
110259525 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
110259553 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAAAGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAAAGGATGCGAACGCCCGAACTCGTTGAG
110259618 TTGAGTCCGAGTTCGT
66 TTGAGTCCGAGTTCGT
110259634 TTATGGGCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAAAGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:110269649 original size:48 final size:49
Alignment explanation
Indices: 110269555--110269656 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 49
110269545 ATACCAAAGA
* * *
110269555 TCTTTTGCCTTAATCAGACAATTAATCCATACTCTTTGACTTCTTCTTCTTC
1 TCTTTTGCCTCAATCAGAC-A--AATCCATACTCTTGGACTTCTTCTCCTTC
110269607 TCTTTTGCCTCAATCAGAC-AATCCATACTCTATGGA-TTCTTCTCCTTC
1 TCTTTTGCCTCAATCAGACAAATCCATACTCT-TGGACTTCTTCTCCTTC
110269655 TC
1 TC
110269657 GTCAAATGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
48 25 0.54
49 3 0.07
52 18 0.39
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (49 bp):
TCTTTTGCCTCAATCAGACAAATCCATACTCTTGGACTTCTTCTCCTTC
Found at i:110270208 original size:54 final size:54
Alignment explanation
Indices: 110270126--110270232 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
110270116 AGTTGGTTTC
*
110270126 ATGATAGAGCCATTTGACTTGATTATCAAGTCAGTTTGGGTGAAACTTTAATCT
1 ATGATAGAGCCATTTGACTTGATTATCAAGTCAGTTTGCGTGAAACTTTAATCT
110270180 ATGATAGAGCCATTTGACTTGATTATCAAGTCAGTTTGCGTGAAACTTTAATC
1 ATGATAGAGCCATTTGACTTGATTATCAAGTCAGTTTGCGTGAAACTTTAATC
110270233 AATTTTCGGC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (54 bp):
ATGATAGAGCCATTTGACTTGATTATCAAGTCAGTTTGCGTGAAACTTTAATCT
Found at i:110273198 original size:10 final size:10
Alignment explanation
Indices: 110273183--110273217 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
110273173 ATTTATAGCA
110273183 AATGTTTAAT
1 AATGTTTAAT
110273193 AATGTTTAAT
1 AATGTTTAAT
*
110273203 AATCTTTAAT
1 AATGTTTAAT
110273213 -ATGTT
1 AATGTT
110273218 GGCGTGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.51
Consensus pattern (10 bp):
AATGTTTAAT
Found at i:110275784 original size:21 final size:21
Alignment explanation
Indices: 110275758--110275798 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
110275748 ATCTGCTCAA
* *
110275758 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
110275779 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
110275799 TTACTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:110280381 original size:46 final size:46
Alignment explanation
Indices: 110280314--110280406 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
110280304 ATTTCTATTT
110280314 AGTTGCTCTAATTTTTTTATTAGTTTATTATAAAAAAGATAAAAAC
1 AGTTGCTCTAATTTTTTTATTAGTTTATTATAAAAAAGATAAAAAC
110280360 AGTTGCTCTAATTTTTTTATTAGTTTATTATAAAAAAGATAAAAAC
1 AGTTGCTCTAATTTTTTTATTAGTTTATTATAAAAAAGATAAAAAC
110280406 A
1 A
110280407 ATGTCATAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.43
Consensus pattern (46 bp):
AGTTGCTCTAATTTTTTTATTAGTTTATTATAAAAAAGATAAAAAC
Found at i:110281298 original size:15 final size:15
Alignment explanation
Indices: 110281263--110281292 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
110281253 CTTAATCCTT
*
110281263 TATAAATTATAAAGA
1 TATAAATTATAAAAA
110281278 TATAAATTATAAAAA
1 TATAAATTATAAAAA
110281293 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
TATAAATTATAAAAA
Found at i:110283890 original size:11 final size:12
Alignment explanation
Indices: 110283874--110283902 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
110283864 CACCATGTTC
110283874 TATCTTTCCA-T
1 TATCTTTCCATT
110283885 TATCTTTCCATT
1 TATCTTTCCATT
110283897 TATCTT
1 TATCTT
110283903 CTTTATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (12 bp):
TATCTTTCCATT
Found at i:110297662 original size:19 final size:19
Alignment explanation
Indices: 110297618--110297666 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
110297608 TTAGAGGGGC
*
110297618 TAAAATATAATTTTACTTT
1 TAAAATTTAATTTTACTTT
**
110297637 TATAAATTTAATTTTTTTTT
1 TA-AAATTTAATTTTACTTT
110297657 TAAAATTTAA
1 TAAAATTTAA
110297667 GAGCTTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TAAAATTTAATTTTACTTT
Found at i:110316034 original size:126 final size:126
Alignment explanation
Indices: 110315816--110316051 Score: 357
Period size: 126 Copynumber: 1.9 Consensus size: 126
110315806 TTCGTGAGCG
* *
110315816 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCTAGAAGCTTAATAAAAATAAACT
1 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCAAGAAGCTTAACAAAAATAAACT
* *
110315881 TATCTGGCACTCAAATTGATGAAGTGTCCTTACCTTTGGACTCTCGATCCCTTCGTGAATT
66 TATCTGGCACTCAAATTGAAGAAGTGTCCTTACCTTTCGACTCTCGATCCCTTCGTGAATT
* * * * *
110315942 GGATCTTAGTTATTGCCCAATGGTCAAGTTTCC-AGAAATCCCAAGAAGCTTAACAAAATTAAAC
1 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAG-AATCCCAAGAAGCTTAACAAAAATAAAC
* *
110316006 TTATCTGGCACTCAAATTGAAGAGGTGTCCTTGCCTTTCGACTCTC
65 TTATCTGGCACTCAAATTGAAGAAGTGTCCTTACCTTTCGACTCTC
110316052 TATGTAATCT
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
125 2 0.02
126 96 0.98
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (126 bp):
GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCAAGAAGCTTAACAAAAATAAACT
TATCTGGCACTCAAATTGAAGAAGTGTCCTTACCTTTCGACTCTCGATCCCTTCGTGAATT
Found at i:110317284 original size:15 final size:15
Alignment explanation
Indices: 110317264--110317295 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
110317254 ATCCTTCACG
110317264 ATGAAGAAGAAGATT
1 ATGAAGAAGAAGATT
*
110317279 ATGAAGGAGAAGATT
1 ATGAAGAAGAAGATT
110317294 AT
1 AT
110317296 CACGTAGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.22
Consensus pattern (15 bp):
ATGAAGAAGAAGATT
Found at i:110320732 original size:21 final size:21
Alignment explanation
Indices: 110320706--110320746 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
110320696 ATCTGCTCAA
* *
110320706 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
*
110320727 ACTCCATCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
110320747 TTGCCGTCTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:110335586 original size:18 final size:18
Alignment explanation
Indices: 110335560--110335634 Score: 105
Period size: 18 Copynumber: 4.2 Consensus size: 18
110335550 CAATCCCAAC
*
110335560 TACTGTATACGTGAACAG
1 TACTGTATACGTGAATAG
*
110335578 TATTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
* * *
110335596 TGCTATATACATGAATAG
1 TACTGTATACGTGAATAG
110335614 TACTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
110335632 TAC
1 TAC
110335635 CGTAAACGGT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (18 bp):
TACTGTATACGTGAATAG
Found at i:110339956 original size:3 final size:3
Alignment explanation
Indices: 110339948--110340326 Score: 129
Period size: 3 Copynumber: 125.7 Consensus size: 3
110339938 TAAAACATAT
* * * *
110339948 ATA ATA AT- ATG ATA ATA ATA ATA ACA ATA GTA ATAA ATAA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A ATA ATA
* * * * *
110339994 ATA ATA AAA ATA ATA GTA A-A GAAA ATA A-A GATA AAA AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA
* * * * * *
110340039 ATG GTA ATA ATA ATA AAA ATA A-A AGTA ATA ATA AT- ATG TTA AGTT
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA A-TA
* * * * * *
110340084 ATA ATA GT- AGA ATA ATA ATA ATA GTG ACA ATA ATA AT- ATA TTA GATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * *
110340131 ATA ATA ATA GTA ATA ATT ATA ATG GTA ATA ATT ATA ATT ATA ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
* * * * * *
110340177 ATA CTA ATA CTA ACA ATA A-A TGTA ATA GTA A-A AT- ATC ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
110340220 ATA ATA GCT- ATA ATA ATA AT- ATT TTAA ATA A-G ATA ATG ATA ATA
1 ATA ATA -ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * * *
110340264 GATA GA-A AGTG GTA GTA GTG ATA ATA CATTA ATA ATA ATA ATA ATA
1 -ATA -ATA A-TA ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA
110340310 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
110340327 TAATTTGAAA
Statistics
Matches: 273, Mismatches: 75, Indels: 56
0.68 0.19 0.14
Matches are distributed among these distances:
2 20 0.07
3 223 0.82
4 28 0.10
5 2 0.01
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:110339981 original size:29 final size:28
Alignment explanation
Indices: 110339941--110340008 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 28
110339931 CAATTAGTAA
*
110339941 AACATATATAAT-AATATGATAATAATAAT
1 AACA-ATATAATAAATA-AATAATAATAAT
*
110339970 AACAATAGTAATAAATAAATAATGATAAT
1 AACAATA-TAATAAATAAATAATAATAAT
110339999 AA-AA-ATAATA
1 AACAATATAATA
110340009 GTAAAGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
26 5 0.14
27 1 0.03
28 5 0.14
29 20 0.57
30 4 0.11
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.29
Consensus pattern (28 bp):
AACAATATAATAAATAAATAATAATAAT
Found at i:110341151 original size:9 final size:9
Alignment explanation
Indices: 110341137--110341168 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
110341127 AATGTCTCCA
110341137 AAAAAAACC
1 AAAAAAACC
110341146 AAAAAAACC
1 AAAAAAACC
110341155 AAAAAAACC
1 AAAAAAACC
110341164 AAAAA
1 AAAAA
110341169 GATTAAAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAACC
Found at i:110343328 original size:15 final size:15
Alignment explanation
Indices: 110343308--110343341 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
110343298 ATATGATAAA
110343308 TAAAAT-AATAACATT
1 TAAAATAAAT-ACATT
110343323 TAAAATAAATACATT
1 TAAAATAAATACATT
110343338 TAAA
1 TAAA
110343342 TGCTATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.83
16 3 0.17
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAATAAATACATT
Found at i:110353616 original size:44 final size:43
Alignment explanation
Indices: 110353553--110353639 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
110353543 TCCTAATTGG
110353553 GAAAATAGTTCCCTTATTCTAATAAACTTACTAAAACATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAAC-TACTAAAACATAAAAA
* *
110353597 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
110353640 TATTTCTAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 15 0.37
44 26 0.63
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (43 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
Found at i:110358359 original size:44 final size:43
Alignment explanation
Indices: 110358289--110358375 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 43
110358279 TCCTAATTGG
110358289 GAAAATAGTTCCCTTATTCCAATAAACTTACTAAAACATAAAAA
1 GAAAATAGTTCCCTTATTCCAATAAAC-TACTAAAACATAAAAA
* * *
110358333 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAAA
1 GAAAATAGTTCCCTTATTCCAATAAACTACTAAAACATAAAAA
110358376 TATTTCTAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 15 0.38
44 25 0.62
ACGTcount: A:0.49, C:0.16, G:0.07, T:0.28
Consensus pattern (43 bp):
GAAAATAGTTCCCTTATTCCAATAAACTACTAAAACATAAAAA
Found at i:110364199 original size:15 final size:15
Alignment explanation
Indices: 110364179--110364208 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
110364169 GACCATGATT
110364179 TATGGCAAAGATAAA
1 TATGGCAAAGATAAA
*
110364194 TATGGCAGAGATAAA
1 TATGGCAAAGATAAA
110364209 CTCTTATTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (15 bp):
TATGGCAAAGATAAA
Found at i:110371521 original size:189 final size:189
Alignment explanation
Indices: 110371295--110371931 Score: 965
Period size: 189 Copynumber: 3.4 Consensus size: 189
110371285 CAATATTTCA
* *
110371295 AAGTTGGAATTCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
110371360 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
*
110371425 CCCTATGTAATCTTCGGAATTTAAATATGAAGGGCTCAAGGGTAAAAAATGTGTCGATC
131 CCCTATGTAATCTTCGGAATTTAAATATGAAGGGCTCAAGGGTAAAAAATGTATCGATC
*
110371484 AAGTTGGAATCCCTTCGTCAATTAGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
* *
110371549 AGGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTTCTTGCCTTTCGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
* * *
110371614 CCCTAAGTAATCTTCGAAATTTAAATATGAGGGGCTCAAGGGTAAAAAATGTATCGATC
131 CCCTATGTAATCTTCGGAATTTAAATATGAAGGGCTCAAGGGTAAAAAATGTATCGATC
* * * * *
110371673 AAGTTGGAATCCCTTCGTAAACTGAATCTTAGTAATTGCCCAATGATCAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
* * *
110371738 AAGAAGCTTAATAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCCTTTGGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
* * * * * *
110371803 CTCTATGTAATCTTCGGGACTTAGATATG-AGTGGCTC-TGCGGTAAAAAATGTATCGACC
131 CCCTATGTAATCTTCGGAATTTAAATATGAAG-GGCTCAAG-GGTAAAAAATGTATCGATC
* * * * * *
110371862 AAGTTGGAATCTCTTCGT-TATCTGGATCTTAGTGGTTGCCCAATGGTTGAATTTCCAGAAATTC
1 AAGTTGGAATCCCTTCGTCAAT-TGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCC
110371926 CAAGAA
65 CAAGAA
110371932 TTACATGGGA
Statistics
Matches: 406, Mismatches: 39, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
188 3 0.01
189 403 0.99
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (189 bp):
AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
CCCTATGTAATCTTCGGAATTTAAATATGAAGGGCTCAAGGGTAAAAAATGTATCGATC
Found at i:110372412 original size:3 final size:3
Alignment explanation
Indices: 110372404--110372438 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
110372394 CAAATCAGTT
*
110372404 TGA TGA TGA TAA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
110372439 TGTTTCGCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:110384164 original size:30 final size:30
Alignment explanation
Indices: 110384130--110384199 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
110384120 GCCCCCTCTA
110384130 AAATTATAAAAATTCAATTTAATCATTTAC
1 AAATTATAAAAATTCAATTTAATCATTTAC
110384160 AAATTATAAAAATTCAATTTAATCATTTAC
1 AAATTATAAAAATTCAATTTAATCATTTAC
110384190 AAATTATAAA
1 AAATTATAAA
110384200 GATATAAACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.39
Consensus pattern (30 bp):
AAATTATAAAAATTCAATTTAATCATTTAC
Found at i:110384969 original size:16 final size:16
Alignment explanation
Indices: 110384948--110384981 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
110384938 TTGAAATCTT
*
110384948 AAGCTTTAAAATGGGA
1 AAGCTTGAAAATGGGA
110384964 AAGCTTGAAAATGGGA
1 AAGCTTGAAAATGGGA
110384980 AA
1 AA
110384982 CACTTTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.26, T:0.21
Consensus pattern (16 bp):
AAGCTTGAAAATGGGA
Found at i:110389620 original size:20 final size:21
Alignment explanation
Indices: 110389571--110389622 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
110389561 TTATGCCACA
110389571 TCAA-TATTCTTATCCTGAATT
1 TCAAGTATT-TTATCCTGAATT
110389592 TCAAG-ATTTTATCCTGAATT
1 TCAAGTATTTTATCCTGAATT
*
110389612 T-TAGTATTTTA
1 TCAAGTATTTTA
110389623 ATTTTGGATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.07
20 19 0.68
21 7 0.25
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (21 bp):
TCAAGTATTTTATCCTGAATT
Found at i:110391754 original size:189 final size:189
Alignment explanation
Indices: 110391541--110392177 Score: 918
Period size: 189 Copynumber: 3.4 Consensus size: 189
110391531 CAATATTTCA
* *
110391541 AAGTTGGAATTCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
* *
110391606 AAGAAGCTTAACAGAATTAAACTTATCTGGCACCCAAATTGAAGAAGTGTCCTTACCTTTCGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
*
110391671 CCCTAGGTAATCTTCGGAATTTAAATATGAGGGGCTCAAGGGTAAAAAATGTATCGATC
131 CCCTATGTAATCTTCGGAATTTAAATATGAGGGGCTCAAGGGTAAAAAATGTATCGATC
*
110391730 AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
* *
110391795 AAGAAGCTTAACAGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTTCTTGCCTTTCGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
* *
110391860 CCCTATGTAATCTTCGAAATTTAAATATGAGGGGCTCAAGGGTAAAAAATGTATCAATC
131 CCCTATGTAATCTTCGGAATTTAAATATGAGGGGCTCAAGGGTAAAAAATGTATCGATC
* * * * *
110391919 AAGTTGGAATCCCTTCGTAAACTGAATCTTAATGATTGCCCAATGATCAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
* * * * *
110391984 AAAAAGCTTAATAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTATCATTGCCTTTGGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
** * * * * * *
110392049 CTTTATGTAATCTTCGGGACTTAGATATGAGTGGCTC-TGCGGTTAAAAATGTATCGATC
131 CCCTATGTAATCTTCGGAATTTAAATATGAGGGGCTCAAG-GGTAAAAAATGTATCGATC
* * * * * * * *
110392108 AAGTTGGAATCTCTTCGT-TATCTAGATCTTAGTGGTTGCCCAATGGTCGAATTTCCAGAAATTC
1 AAGTTGGAATCCCTTCATCAAT-TGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCC
110392172 CAAGAA
65 CAAGAA
110392178 TTATATGGGA
Statistics
Matches: 404, Mismatches: 42, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
188 2 0.00
189 402 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (189 bp):
AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
CCCTATGTAATCTTCGGAATTTAAATATGAGGGGCTCAAGGGTAAAAAATGTATCGATC
Found at i:110395223 original size:39 final size:39
Alignment explanation
Indices: 110395169--110395425 Score: 399
Period size: 39 Copynumber: 6.5 Consensus size: 39
110395159 TAATGGAGAA
110395169 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
110395208 TTATATCCGGGCTAAGTCCAGAAGGAATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
110395247 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
110395286 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
110395325 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
110395364 TTATATCCGGGCTAAAGTCTCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
110395403 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
110395426 CATGCTTTGT
Statistics
Matches: 201, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 182 0.91
40 19 0.09
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:110403620 original size:47 final size:47
Alignment explanation
Indices: 110403524--110403726 Score: 268
Period size: 47 Copynumber: 4.3 Consensus size: 47
110403514 TGCACACTTT
* * *
110403524 TCACAATTGGTCATTCGGCCTTATCACATAT--TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACACTTTCACAT-TCA
** * * * **
110403570 TCACATTAACCATTCAGCCTTATCTCATGTATGCACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
110403617 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
*
110403664 TCATATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
110403711 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
110403727 ATCTTAAGCT
Statistics
Matches: 137, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
45 20 0.15
46 5 0.04
47 112 0.82
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
Found at i:110403714 original size:25 final size:25
Alignment explanation
Indices: 110403638--110403716 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
110403628 ATTCGGCCTT
110403638 ATCACATATACACACTTTCACATTC
1 ATCACATATACACACTTTCACATTC
* * * *
110403663 ATCATAT-TGGC-CA--TTCGGCCTT-
1 ATCACATAT-ACACACTTTC-ACATTC
110403685 ATCACATATACACACTTTCACATTC
1 ATCACATATACACACTTTCACATTC
110403710 ATCACAT
1 ATCACAT
110403717 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
22 10 0.26
23 6 0.15
24 6 0.15
25 17 0.44
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATACACACTTTCACATTC
Found at i:110413069 original size:10 final size:10
Alignment explanation
Indices: 110413047--110413078 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
110413037 TAACAGTAGC
110413047 GCAAATGGACA
1 GCAAAT-GACA
110413058 GCAAATGACA
1 GCAAATGACA
110413068 GCAAATGACA
1 GCAAATGACA
110413078 G
1 G
110413079 TGATGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.71
11 6 0.29
ACGTcount: A:0.47, C:0.19, G:0.25, T:0.09
Consensus pattern (10 bp):
GCAAATGACA
Found at i:110417688 original size:38 final size:38
Alignment explanation
Indices: 110417637--110417712 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
110417627 TCAAGCATAG
* *
110417637 CTGTCAAATATCTTGTAGCTATATACTTTCCTAAGAAT
1 CTGTCAAATATCTTGTAGATATATACTTTACTAAGAAT
*
110417675 CTGTCAAGTATCTTGTAGATATATACTTTACTAAGAAT
1 CTGTCAAATATCTTGTAGATATATACTTTACTAAGAAT
110417713 AGGTTACTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (38 bp):
CTGTCAAATATCTTGTAGATATATACTTTACTAAGAAT
Found at i:110417793 original size:22 final size:23
Alignment explanation
Indices: 110417768--110417815 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
110417758 TATTTTAGGA
* * *
110417768 TGTGATT-AGGGATTTGATTTGC
1 TGTGATTAAGGAATTTAATATGC
110417790 TGTGATTAAGGAATTTAATATGC
1 TGTGATTAAGGAATTTAATATGC
110417813 TGT
1 TGT
110417816 ACCAGTGCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.25, C:0.04, G:0.27, T:0.44
Consensus pattern (23 bp):
TGTGATTAAGGAATTTAATATGC
Found at i:110419747 original size:27 final size:27
Alignment explanation
Indices: 110419713--110419766 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
110419703 TTTTATTAAG
110419713 TTAGTGTGATACTAATTTATTTTTACT
1 TTAGTGTGATACTAATTTATTTTTACT
110419740 TTAGTGTGATACTAATTTATTTTTACT
1 TTAGTGTGATACTAATTTATTTTTACT
110419767 GTTTAAGGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.07, G:0.11, T:0.56
Consensus pattern (27 bp):
TTAGTGTGATACTAATTTATTTTTACT
Found at i:110419764 original size:22 final size:24
Alignment explanation
Indices: 110419704--110419761 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 24
110419694 ATTAAATATT
* *
110419704 TTTATTAAGTTAGTGTGATACTAA
1 TTTATTTATTTAGTGTGATACTAA
110419728 TTTATTTTTACTTTAGTGTGATACTAA
1 TTTA--TTTA-TTTAGTGTGATACTAA
110419755 TTTATTT
1 TTTATTT
110419762 TTACTGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 4 0.14
25 3 0.10
26 3 0.10
27 19 0.66
ACGTcount: A:0.28, C:0.05, G:0.12, T:0.55
Consensus pattern (24 bp):
TTTATTTATTTAGTGTGATACTAA
Done.