Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 4 of 344
Found at i:1387737 original size:16 final size:15
Alignment explanation
Indices: 1387703--1387737 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1387693 TTTTAGAATT
*
1387703 TATCCCTTTTCAAAT
1 TATCCCTTTTCAAAG
1387718 TATCCCTTTTCAAAAG
1 TATCCCTTTTC-AAAG
1387734 TATC
1 TATC
1387738 TTTCATACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.29, C:0.26, G:0.03, T:0.43
Consensus pattern (15 bp):
TATCCCTTTTCAAAG
Found at i:1388885 original size:18 final size:18
Alignment explanation
Indices: 1388858--1388950 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
1388848 TACGACCGTT
1388858 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
1388876 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
**
1388894 TATAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
1388912 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
1388930 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
1388948 TAC
1 TAC
1388951 AGTAGTTGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:1395807 original size:18 final size:19
Alignment explanation
Indices: 1395768--1395808 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
1395758 AAAATTACAA
*
1395768 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTAT
*
1395787 AAAATTCAAAA-CATTTAT
1 AAAATTCAAAATAATTTAT
1395805 AAAA
1 AAAA
1395809 ATTTCGAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:1395853 original size:13 final size:13
Alignment explanation
Indices: 1395835--1395861 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1395825 TTTTTTAAAG
1395835 AATTGTAAAAAAA
1 AATTGTAAAAAAA
1395848 AATTGTAAAAAAA
1 AATTGTAAAAAAA
1395861 A
1 A
1395862 TTCTAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (13 bp):
AATTGTAAAAAAA
Found at i:1395859 original size:12 final size:12
Alignment explanation
Indices: 1395835--1395868 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1395825 TTTTTTAAAG
1395835 AATTGTAAAAAAA
1 AATTGT-AAAAAA
1395848 AATTGTAAAAAA
1 AATTGTAAAAAA
*
1395860 AATTCTAAA
1 AATTGTAAA
1395869 TAATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.26
Consensus pattern (12 bp):
AATTGTAAAAAA
Found at i:1404552 original size:18 final size:18
Alignment explanation
Indices: 1404529--1404621 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
1404519 CCCAACTACT
*
1404529 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
1404547 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
1404565 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
1404583 GTATATGTGAATAGTGCC
1 GTATACGTGAATAGTACC
1404601 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
1404619 GTA
1 GTA
1404622 AACGGTCGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:1404581 original size:36 final size:36
Alignment explanation
Indices: 1404530--1404621 Score: 157
Period size: 36 Copynumber: 2.6 Consensus size: 36
1404520 CCAACTACTG
*
1404530 TATACGTGAACAGTACCGTATACGTGAATAGTGCCA
1 TATACGTGAATAGTACCGTATACGTGAATAGTGCCA
* *
1404566 TATACGTGAATAGTACCGTATATGTGAATAGTGCCG
1 TATACGTGAATAGTACCGTATACGTGAATAGTGCCA
1404602 TATACGTGAATAGTACCGTA
1 TATACGTGAATAGTACCGTA
1404622 AACGGTCGTA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (36 bp):
TATACGTGAATAGTACCGTATACGTGAATAGTGCCA
Found at i:1405674 original size:14 final size:14
Alignment explanation
Indices: 1405657--1405697 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
1405647 TAGACGATAT
1405657 TTATTAATTTTAAA
1 TTATTAATTTTAAA
*
1405671 TTATTAAATTT-AA
1 TTATTAATTTTAAA
*
1405684 TTAATAATTTTAAA
1 TTATTAATTTTAAA
1405698 ATTTATATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TTATTAATTTTAAA
Found at i:1408880 original size:16 final size:16
Alignment explanation
Indices: 1408859--1408893 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1408849 GAATGAAAGG
1408859 TTTTATCTATTTTCTT
1 TTTTATCTATTTTCTT
* *
1408875 TTTTATTTTTTTTCTT
1 TTTTATCTATTTTCTT
1408891 TTT
1 TTT
1408894 CGAATCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTATCTATTTTCTT
Found at i:1409534 original size:3 final size:3
Alignment explanation
Indices: 1409516--1409655 Score: 79
Period size: 3 Copynumber: 46.3 Consensus size: 3
1409506 TTTTGTTGCT
* * *
1409516 TTA TCA TTA TTTA TTA TTA TTTA TTA TTA TTA TCTA TTA TCA ATA TTA
1 TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* * * * * *
1409564 TTA TTA CTA TTA TT- TTT TTA CTA TTA TTA TT- TCA CATA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* * * * * * *
1409608 TTT TTT TTG TTA TTA TTA TTA TTA CTA TT- GTA TTA TTA CTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1409655 T
1 T
1409656 ATTCTCATCT
Statistics
Matches: 103, Mismatches: 27, Indels: 14
0.72 0.19 0.10
Matches are distributed among these distances:
2 4 0.04
3 89 0.86
4 10 0.10
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:1409586 original size:14 final size:14
Alignment explanation
Indices: 1409567--1409614 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 14
1409557 AATATTATTA
1409567 TTACTATTATTTTT
1 TTACTATTATTTTT
1409581 TTACTATTATTATTT
1 TTACTATTATT-TTT
*
1409596 CACATACTATTATTTTT
1 ---TTACTATTATTTTT
1409613 TT
1 TT
1409615 TGTTATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 12 0.43
15 3 0.11
17 3 0.11
18 10 0.36
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (14 bp):
TTACTATTATTTTT
Found at i:1409705 original size:14 final size:15
Alignment explanation
Indices: 1409674--1409711 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
1409664 CTGTGTTTAT
1409674 TTTTTATTTATCTAA
1 TTTTTATTTATCTAA
1409689 TTTTTATTTATCT-A
1 TTTTTATTTATCTAA
*
1409703 TTTATATTT
1 TTTTTATTT
1409712 CTGTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTATTTATCTAA
Found at i:1409946 original size:5 final size:5
Alignment explanation
Indices: 1409938--1409979 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
1409928 ATTTCGTATT
*
1409938 TTTTA TTTTA TTTTA TTTCA TTTTA TTATT- TTTTA -TTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTT
1409980 AAACTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 6 0.19
5 24 0.75
6 2 0.06
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:1409954 original size:29 final size:29
Alignment explanation
Indices: 1409922--1409979 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
1409912 TGTTTTTGCC
*
1409922 TATTTCA-TTTCGTATTTTTTATTTTATTT
1 TATTTCATTTTAGTATTTTTTA-TTTATTT
*
1409951 TATTTCATTTTATTATTTTTTATTTATTT
1 TATTTCATTTTAGTATTTTTTATTTATTT
1409980 AAACTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (29 bp):
TATTTCATTTTAGTATTTTTTATTTATTT
Found at i:1409963 original size:20 final size:19
Alignment explanation
Indices: 1409938--1409979 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
1409928 ATTTCGTATT
1409938 TTTTATT-TTATTTTATTTCA
1 TTTTATTATT-TTTTATTT-A
1409958 TTTTATTATTTTTTATTTA
1 TTTTATTATTTTTTATTTA
1409977 TTT
1 TTT
1409980 AAACTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTATTATTTTTTATTTA
Found at i:1416202 original size:18 final size:18
Alignment explanation
Indices: 1416179--1416271 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
1416169 CCCAACTACT
*
1416179 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
1416197 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
* *
1416215 GTATTCATGAATAGTACC
1 GTATACGTGAATAGTACC
*
1416233 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
1416251 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
1416269 GTA
1 GTA
1416272 AACGGTCGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:1417535 original size:7 final size:7
Alignment explanation
Indices: 1417523--1417552 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
1417513 AAATCAAAGT
1417523 CAAAATG
1 CAAAATG
1417530 CAAAATG
1 CAAAATG
1417537 CAAAATG
1 CAAAATG
1417544 CAAAATG
1 CAAAATG
1417551 CA
1 CA
1417553 GTGCTTTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13
Consensus pattern (7 bp):
CAAAATG
Found at i:1421205 original size:17 final size:17
Alignment explanation
Indices: 1421183--1421216 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1421173 ATCCACTAAT
*
1421183 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
1421200 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
1421217 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:1425844 original size:17 final size:17
Alignment explanation
Indices: 1425822--1425855 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1425812 ATCCACTAAT
*
1425822 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
1425839 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
1425856 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:1436485 original size:43 final size:43
Alignment explanation
Indices: 1436404--1436485 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
1436394 AAATTAAATT
* *
1436404 TTTATAATTTTAAGAGTTCAAAGTATAATTTTACTTTTATTAA
1 TTTAAAATTTTAAAAGTTCAAAGTATAATTTTACTTTTATTAA
1436447 TTTAAAATTTTAAAAGTT-AAA-TAATAATTTTACATTTTA
1 TTTAAAATTTTAAAAGTTCAAAGT-ATAATTTTAC-TTTTA
1436486 AATGTCTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 1 0.03
42 13 0.37
43 21 0.60
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (43 bp):
TTTAAAATTTTAAAAGTTCAAAGTATAATTTTACTTTTATTAA
Found at i:1449146 original size:18 final size:18
Alignment explanation
Indices: 1449119--1449153 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1449109 GATAAATCCT
1449119 AATCAAGGATTTACTCCC
1 AATCAAGGATTTACTCCC
*
1449137 AATCAGGGATTTACTCC
1 AATCAAGGATTTACTCC
1449154 TATATTAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (18 bp):
AATCAAGGATTTACTCCC
Found at i:1460656 original size:17 final size:17
Alignment explanation
Indices: 1460602--1460657 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 17
1460592 TTTAAAAGAT
1460602 ATTTTA-TAAT-TTTTA
1 ATTTTATTAATATTTTA
*
1460617 ATATTTGTT-ATATGTTTA
1 AT-TTTATTAATAT-TTTA
1460635 GATTTTATTAATATTTTA
1 -ATTTTATTAATATTTTA
1460653 ATTTT
1 ATTTT
1460658 TCAAGAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
15 2 0.06
16 5 0.15
17 7 0.21
18 13 0.39
19 6 0.18
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.64
Consensus pattern (17 bp):
ATTTTATTAATATTTTA
Found at i:1461956 original size:103 final size:102
Alignment explanation
Indices: 1461853--1462598 Score: 659
Period size: 102 Copynumber: 7.2 Consensus size: 102
1461843 AAAATTCAAA
1461853 TTTTTTTAAAACTCGTATTTTCGGAGAGTAAAAAAATTTTTTCAAAAAAAATTTTGAATTTTTTT
1 TTTTTTTAAAACTCGTATTTTC-GAGAGTAAAAAAATTTTTT-AAAAAAAATTTTGAATTTTTTT
* * *
1461918 TGTACTGGGTGCCAGCCATTGACAGACCAGCACCCAAATTTT
64 TGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CCAAA--AT
* * *
1461960 TTTTTTTAAAAAAACTCGTATTTTCGA-A-TAGCAAAAA-TTTTTAAAAAAAA-ATCGAATTTTT
1 TTTTTTT---AAAACTCGTATTTTCGAGAGTA-AAAAAATTTTTTAAAAAAAATTTTGAATTTTT
* * *
1462021 TTTGTACTGGATGCTGGCC--TGTCAGGCCAGCATCCAAAAAT
62 TTTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CC-AAAAT
**
1462062 TTTTTTTAAAAAAAACTCGTATTTTCG-GA-TAGCAAAATTTTTT-AAAAAAATTTTGAA-TTTT
1 TTTTTTT----AAAACTCGTATTTTCGAGAGTAAAAAAATTTTTTAAAAAAAATTTTGAATTTTT
*
1462123 TTT-TATTGGGTGCCGGCCATTGACAGGCCAGCACTCAAAAAT
62 TTTGTACTGGGTGCCGGCCATTGACAGGCCAGCAC-C-AAAAT
* * * * * *
1462165 TTTTTTTAAAAAAACTCGTATTTTTTGATAATAAAAAAA--ATTTGAAAAAAATTTTGATTTTTT
1 TTTTTTT---AAAACTCGTA-TTTTCGAGAGTAAAAAAATTTTTTAAAAAAAATTTTGA-ATTTT
* *
1462228 TTTTGTACTGGGTGCCAGCCATTGACAGGCCAGCACCCAAATTT
61 TTTTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CCAAA-AT
* ** *
1462272 TTTTTTTAAAACTCGTACTTTCGGAGAGTAAAAAAAAATTTTGAAAAAAATTTTGAATTTTTTTT
1 TTTTTTTAAAACTCGTATTTTC-GAGAGTAAAAAAATTTTTTAAAAAAAATTTTGAATTTTTTTT
* * *
1462337 GTACTTGGTGCCGGCCATTGATAGGGCAGCACCAAAATT
65 GTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAAA-T
* * * * * *
1462376 TTTTTTTTAAACTCGTATTTTCAGTGAGCAAAAAATTTTTTTTAAAAAAA-CTTGAA-TTTTTTT
1 TTTTTTTAAAACTCGTATTTTC-GAGAGTAAAAAAATTTTTTAAAAAAAATTTTGAATTTTTTTT
*
1462439 GTACTGGGTGCCGGCCATTAACAGG-CAGCACTCAAAAT
65 GTACTGGGTGCCGGCCATTGACAGGCCAGCAC-CAAAAT
* * *
1462477 TTTTTTTTAAACTCGTATTTTCGA-AG-AGAAAAATTTTTTTAAAAAAA-TTTGAATTTTTTTTT
1 TTTTTTTAAAACTCGTATTTTCGAGAGTAAAAAAATTTTTTAAAAAAAATTTTGAA--TTTTTTT
* * ** * * *
1462539 TATACTTGGTGCCAACAATTGATAGGCCAGCACCAAAAAA
64 TGTACTGGGTGCCGGCCATTGACAGGCCAGCACC-AAAAT
**
1462579 AATTTTT-AAACTCGTATTTT
1 TTTTTTTAAAACTCGTATTTT
1462599 GTATACGAAT
Statistics
Matches: 543, Mismatches: 65, Indels: 68
0.80 0.10 0.10
Matches are distributed among these distances:
98 24 0.04
99 2 0.00
100 1 0.00
101 80 0.15
102 89 0.16
103 86 0.16
104 85 0.16
105 66 0.12
106 35 0.06
107 51 0.09
108 7 0.01
109 2 0.00
110 15 0.03
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (102 bp):
TTTTTTTAAAACTCGTATTTTCGAGAGTAAAAAAATTTTTTAAAAAAAATTTTGAATTTTTTTTG
TACTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAT
Found at i:1462029 original size:105 final size:101
Alignment explanation
Indices: 1461853--1462598 Score: 663
Period size: 103 Copynumber: 7.2 Consensus size: 101
1461843 AAAATTCAAA
1461853 TTTTTTTAAAACTCGTATTTTCGGAGAGTA-AAAAAATTTTTTCAAAAAAAATTTTGAATTTTTT
1 TTTTTTTAAAACTCGTATTTTC-GA-A-TAGAAAAAA-TTTTT-AAAAAAAA-TTTGAATTTTTT
* * *
1461917 TTGTACTGGGTGCCAGCCATTGACAGACCAGCACCCAAATTTT
60 TTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAA-ATT
* * *
1461960 TTTTTTTAAAAAAACTCGTATTTTCGAATAGCAAAAATTTTTAAAAAAAAATCGAATTTTTTTTG
1 TTTTTTT---AAAACTCGTATTTTCGAATAGAAAAAATTTTTAAAAAAAATTTGAATTTTTTTTG
* * * *
1462025 TACTGGATGCTGGCC--TGTCAGGCCAGCATCCAAAAATT
63 TACTGGGTGCCGGCCATTGACAGGCCAGCA-CCCAAAATT
* * * * *
1462063 TTTTTTAAAAAAAACTCGTATTTTCGGATAGCAAAATTTTTTAAAAAAATTTTGAA-TTTTTTT-
1 TTTTTT---TAAAACTCGTATTTTCGAATAGAAAAAATTTTTAAAAAAAATTTGAATTTTTTTTG
* *
1462126 TATTGGGTGCCGGCCATTGACAGGCCAGCACTCAAAAATT
63 TACTGGGTGCCGGCCATTGACAGGCCAGCAC-CCAAAATT
* * * * * *
1462166 TTTTTTAAAAAAACTCGTATTTTTTGATAATA-AAAAAAATTTGAAAAAAATTTTGATTTTTTTT
1 TTTTTT--TAAAACTCGTA-TTTTCG--AATAGAAAAAATTTTTAAAAAAAATTTGA-ATTTTTT
* *
1462230 TTGTACTGGGTGCCAGCCATTGACAGGCCAGCACCCAAATTT
60 TTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATT
* * * *
1462272 TTTTTTTAAAACTCGTACTTTCGGAGAGTAAAAAAAAATTTTGAAAAAAATTTTGAATTTTTTTT
1 TTTTTTTAAAACTCGTATTTTC-GA-A-T-AGAAAAAATTTTTAAAAAAAATTTGAATTTTTTTT
* * *
1462337 GTACTTGGTGCCGGCCATTGATAGGGCAGCA-CCAAAATT
62 GTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATT
* * * *
1462376 TTTTTTTTAAACTCGTATTTTC-AGTGAGCAAAAAATTTTTTTTAAAAAAACTTGAA-TTTTTTT
1 TTTTTTTAAAACTCGTATTTTCGAAT-AG-AAAAAA--TTTTTAAAAAAAATTTGAATTTTTTTT
* *
1462439 GTACTGGGTGCCGGCCATTAACAGG-CAGCACTCAAAATT
62 GTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATT
* * * *
1462478 TTTTTTT-AAACTCGTATTTTCGAAGAGAAAAATTTTTTTAAAAAAATTTGAATTTTTTTTTTAT
1 TTTTTTTAAAACTCGTATTTTCGAATAGAAAAAATTTTTAAAAAAAATTTGAA--TTTTTTTTGT
* ** * * **
1462542 ACTTGGTGCCAACAATTGATAGGCCAGCA-CCAAAAAA
64 ACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATT
**
1462579 AATTTTT-AAACTCGTATTTT
1 TTTTTTTAAAACTCGTATTTT
1462599 GTATACGAAT
Statistics
Matches: 538, Mismatches: 70, Indels: 68
0.80 0.10 0.10
Matches are distributed among these distances:
98 18 0.03
100 7 0.01
101 87 0.16
102 72 0.13
103 110 0.20
104 64 0.12
105 64 0.12
106 50 0.09
107 43 0.08
108 6 0.01
109 2 0.00
110 15 0.03
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (101 bp):
TTTTTTTAAAACTCGTATTTTCGAATAGAAAAAATTTTTAAAAAAAATTTGAATTTTTTTTGTAC
TGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATT
Found at i:1462320 original size:12 final size:12
Alignment explanation
Indices: 1462303--1462328 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1462293 CGGAGAGTAA
1462303 AAAAAAATTTTG
1 AAAAAAATTTTG
1462315 AAAAAAATTTTG
1 AAAAAAATTTTG
1462327 AA
1 AA
1462329 TTTTTTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AAAAAAATTTTG
Found at i:1463795 original size:29 final size:28
Alignment explanation
Indices: 1463736--1463796 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
1463726 CTATAAATTT
**
1463736 TTTAATAAAATAACTAATTTATTTTTTAA
1 TTTAATAAAATAACTAATTTA-TTTAAAA
1463765 TTTAATAAACATATACTAATTTA-TTAAAA
1 TTTAATAAA-ATA-ACTAATTTATTTAAAA
1463794 TTT
1 TTT
1463797 TTTACACCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 16 0.57
30 3 0.11
31 9 0.32
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (28 bp):
TTTAATAAAATAACTAATTTATTTAAAA
Found at i:1466228 original size:22 final size:23
Alignment explanation
Indices: 1466173--1466225 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
1466163 AACAGCCAAC
*
1466173 AACTTAAATAAAAACTTTTAAAT
1 AACTTAAATAAAAACTTTCAAAT
1466196 AACTTAAATAAAAACTTTCAAAT
1 AACTTAAATAAAAACTTTCAAAT
*
1466219 AATTTAA
1 AACTTAA
1466226 TAACTAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (23 bp):
AACTTAAATAAAAACTTTCAAAT
Found at i:1481371 original size:11 final size:11
Alignment explanation
Indices: 1481355--1481385 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
1481345 AAGTATGGGT
1481355 AGGTATGGGAA
1 AGGTATGGGAA
*
1481366 AGGTATGGGCA
1 AGGTATGGGAA
1481377 AGGTATGGG
1 AGGTATGGG
1481386 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:1485462 original size:18 final size:18
Alignment explanation
Indices: 1485439--1485531 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
1485429 CCCAACTACT
**
1485439 GTATACGTGAACCGTACC
1 GTATACGTGAATAGTACC
1485457 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
1485475 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
1485493 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
1485511 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
1485529 GTA
1 GTA
1485532 AACGGTCGTA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:1486093 original size:11 final size:11
Alignment explanation
Indices: 1486077--1486107 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
1486067 AAGTATGGGT
1486077 AGGTATGGGAA
1 AGGTATGGGAA
*
1486088 AGGTATGGGCA
1 AGGTATGGGAA
1486099 AGGTATGGG
1 AGGTATGGG
1486108 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:1501514 original size:89 final size:89
Alignment explanation
Indices: 1501363--1501540 Score: 347
Period size: 89 Copynumber: 2.0 Consensus size: 89
1501353 TCTTGACAGA
*
1501363 GGAGAGAAACAAAATCCCGACATAGGGACAATACTTTAAAGTTGTTGGGGGTTCGACTGTCTACC
1 GGAGAGAAACAAAATCCCGACATAGGGACAATACTTTAAAGTTGTTGGGGGATCGACTGTCTACC
1501428 TATCAGACAACACTTTGAAAACTT
66 TATCAGACAACACTTTGAAAACTT
1501452 GGAGAGAAACAAAATCCCGACATAGGGACAATACTTTAAAGTTGTTGGGGGATCGACTGTCTACC
1 GGAGAGAAACAAAATCCCGACATAGGGACAATACTTTAAAGTTGTTGGGGGATCGACTGTCTACC
1501517 TATCAGACAACACTTTGAAAACTT
66 TATCAGACAACACTTTGAAAACTT
1501541 CTCCTAAAAG
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 88 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (89 bp):
GGAGAGAAACAAAATCCCGACATAGGGACAATACTTTAAAGTTGTTGGGGGATCGACTGTCTACC
TATCAGACAACACTTTGAAAACTT
Found at i:1503105 original size:10 final size:10
Alignment explanation
Indices: 1503092--1503116 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
1503082 TGTTTTGTCT
1503092 TTTATGTTTA
1 TTTATGTTTA
1503102 TTTATGTTTA
1 TTTATGTTTA
1503112 TTTAT
1 TTTAT
1503117 TTATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
TTTATGTTTA
Found at i:1503168 original size:14 final size:13
Alignment explanation
Indices: 1503139--1503164 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1503129 ACTTTTAAAA
1503139 ATTTGAAATATTT
1 ATTTGAAATATTT
1503152 ATTTGAAATATTT
1 ATTTGAAATATTT
1503165 TATTAGTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATTTGAAATATTT
Found at i:1503225 original size:21 final size:21
Alignment explanation
Indices: 1503201--1503256 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
1503191 TTAATTATAT
*
1503201 ATTTTGAA-ATTACTTTTTTAA
1 ATTTTAAATATTA-TTTTTTAA
1503222 ATTTTAAATATTATTTTTTAATA
1 ATTTTAAATATTATTTTTT-A-A
*
1503245 ATATTAAATATT
1 ATTTTAAATATT
1503257 TAAATATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 13 0.43
22 5 0.17
23 12 0.40
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTTTAAATATTATTTTTTAA
Found at i:1503282 original size:22 final size:21
Alignment explanation
Indices: 1503254--1503315 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 21
1503244 AATATTAAAT
1503254 ATTTAAATATTTTAAAATCATA
1 ATTTAAATATTTTAAAATCA-A
*
1503276 ATTTAAAATATTATAAAA-CAA
1 ATTT-AAATATTTTAAAATCAA
1503297 A-TTAAATAATATTTAAAAT
1 ATTTAAAT-AT-TTTAAAAT
1503316 ATTATAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 8 0.24
22 6 0.18
23 12 0.35
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTTAAATATTTTAAAATCAA
Found at i:1503313 original size:21 final size:23
Alignment explanation
Indices: 1503256--1503315 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 23
1503246 TATTAAATAT
1503256 TTAAAT-AT-TTTAAAATCATAA
1 TTAAATAATATTTAAAATCATAA
*
1503277 TTTAA-AATATTATAAAA-CA-AA
1 TTAAATAATATT-TAAAATCATAA
1503298 TTAAATAATATTTAAAAT
1 TTAAATAATATTTAAAAT
1503316 ATTATAAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 17 0.53
22 10 0.31
23 5 0.16
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (23 bp):
TTAAATAATATTTAAAATCATAA
Found at i:1503485 original size:23 final size:22
Alignment explanation
Indices: 1503409--1503485 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 22
1503399 AAGTAATTTC
**
1503409 AAAATATATATTTAAAATTTAGAA
1 AAAATATATATTTAAAATTT--TT
*
1503433 AAATATATATATTAATAAAATATTT
1 AAA-ATATATATT--TAAAATTTTT
*
1503458 CAAATATATATTTCAAAATTTTT
1 AAAATATATATTT-AAAATTTTT
1503481 AAAAT
1 AAAAT
1503486 TAATAATAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
22 1 0.02
23 12 0.28
24 12 0.28
25 11 0.26
27 7 0.16
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (22 bp):
AAAATATATATTTAAAATTTTT
Found at i:1503485 original size:49 final size:48
Alignment explanation
Indices: 1503404--1503498 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 48
1503394 TAACAAAGTA
*
1503404 ATTTCAAAATATATATTTAAAATTTAGAAAAATATATATATTAATAAAAT
1 ATTTCAAAATATATATTTAAAATTTAGAAAAAT-TA-ATAATAATAAAAT
**
1503454 ATTTC-AAATATATATTTCAAAATTT-TTAAAATTAATAATAATAAA
1 ATTTCAAAATATATATTT-AAAATTTAGAAAAATTAATAATAATAAA
1503499 TAAATAAACA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 10 0.24
48 2 0.05
49 17 0.41
50 12 0.29
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (48 bp):
ATTTCAAAATATATATTTAAAATTTAGAAAAATTAATAATAATAAAAT
Found at i:1503538 original size:9 final size:9
Alignment explanation
Indices: 1503526--1503559 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
1503516 CAAAACATAA
1503526 AAAAAAGTC
1 AAAAAAGTC
1503535 AAAAAAGTC
1 AAAAAAGTC
*
1503544 AAAAAAGTA
1 AAAAAAGTC
1503553 AAAAAAG
1 AAAAAAG
1503560 AAAAGAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.74, C:0.06, G:0.12, T:0.09
Consensus pattern (9 bp):
AAAAAAGTC
Found at i:1503568 original size:9 final size:9
Alignment explanation
Indices: 1503525--1503569 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
1503515 ACAAAACATA
1503525 AAAAAAAGT
1 AAAAAAAGT
*
1503534 CAAAAAAGT
1 AAAAAAAGT
*
1503543 CAAAAAAGT
1 AAAAAAAGT
1503552 AAAAAAAG-
1 AAAAAAAGT
1503560 AAAAGAAAGT
1 AAAA-AAAGT
1503570 GACATGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
8 4 0.12
9 28 0.88
ACGTcount: A:0.73, C:0.04, G:0.13, T:0.09
Consensus pattern (9 bp):
AAAAAAAGT
Found at i:1517698 original size:57 final size:58
Alignment explanation
Indices: 1517620--1517746 Score: 134
Period size: 57 Copynumber: 2.2 Consensus size: 58
1517610 CAACATTTCT
* * * *
1517620 CACATTGGGGCTCGAACTTTTTTTT-TTCAACTTAGGTCTTAG-CTTGGAAATTGTTCC
1 CACATTGGGGCTCAAAATTTTTTTTATTCAACTTAAGTC-CAGACTTGGAAATTGTTCC
* *
1517677 CACATTGGGG-TCTAAAATTTTTTTTATTTAACTTAAGTCCAGAACTTGGCAATTGTTCC
1 CACATTGGGGCTC-AAAATTTTTTTTATTCAACTTAAGTCCAG-ACTTGGAAATTGTTCC
* *
1517736 CATATTTGGGC
1 CACATTGGGGC
1517747 CAGAACCTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
56 2 0.04
57 22 0.39
58 11 0.19
59 22 0.39
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (58 bp):
CACATTGGGGCTCAAAATTTTTTTTATTCAACTTAAGTCCAGACTTGGAAATTGTTCC
Found at i:1520244 original size:23 final size:23
Alignment explanation
Indices: 1520199--1520300 Score: 102
Period size: 23 Copynumber: 4.3 Consensus size: 23
1520189 CATTCAAGAC
1520199 TTTGTTTTTT-G-GGGT-TTTTT
1 TTTGTTTTTTGGAGGGTGTTTTT
1520219 TTTGTTTTTTGGAGGGTGTTTTT
1 TTTGTTTTTTGGAGGGTGTTTTT
* *
1520242 TTTGTTTGTTGGAGGAGGTTTGTTTT
1 TTTGTTTTTTGGA-G-GGTGT-TTTT
* *
1520268 TTTGTTTTTTGGAGGAGGGTTGCTT
1 TTTGTTTTTTGGAGG-GTGTT-TTT
1520293 TTTGTTTT
1 TTTGTTTT
1520301 GAAAAGGCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
20 10 0.15
21 1 0.01
22 4 0.06
23 17 0.25
24 3 0.04
25 17 0.25
26 16 0.24
ACGTcount: A:0.05, C:0.01, G:0.30, T:0.64
Consensus pattern (23 bp):
TTTGTTTTTTGGAGGGTGTTTTT
Found at i:1520258 original size:26 final size:24
Alignment explanation
Indices: 1520210--1520300 Score: 96
Period size: 26 Copynumber: 3.7 Consensus size: 24
1520200 TTGTTTTTTG
*
1520210 GGGTTTTTTTTTGTTTTT--TGGA
1 GGGTTTTTTTTTGTTTTTGGAGGA
1520232 GGGTGTTTTTTTTGTTTGTTGGAGGA
1 GGGT-TTTTTTTTGTTT-TTGGAGGA
*
1520258 GGTTTGTTTTTTTGTTTTTTGGAGGA
1 GGGTT-TTTTTTTG-TTTTTGGAGGA
**
1520284 GGGTTGCTTTTTGTTTT
1 GGGTTTTTTTTTGTTTT
1520301 GAAAAGGCTA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
22 4 0.07
23 12 0.21
24 6 0.10
25 7 0.12
26 26 0.45
27 3 0.05
ACGTcount: A:0.05, C:0.01, G:0.32, T:0.62
Consensus pattern (24 bp):
GGGTTTTTTTTTGTTTTTGGAGGA
Found at i:1521014 original size:3 final size:3
Alignment explanation
Indices: 1521006--1521044 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
1520996 TGTATTTCTA
* *
1521006 TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1521045 CATTGTTTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:1521572 original size:132 final size:132
Alignment explanation
Indices: 1521346--1521585 Score: 329
Period size: 132 Copynumber: 1.8 Consensus size: 132
1521336 AACGGAGATG
* * * * * *
1521346 ATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGTTGGGTTGCAATTTCTTGTTTGC
1 ATGTTCGACGTTCAGCAATTCGGAGAATCGTACCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
* * * * *
1521411 CCAAAATAATCGGATGTCTCTTTAGAATTTCGTTCATGTTTTCTAAAAACCTTTTAAAACGAAGG
66 CCAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAACCTTTTAAAACGAAGG
1521476 AA
131 AA
* * *
1521478 ATGTTCGACGTTCGGCAATTCGGAGAATCGTACCTTATCGTGCTGGGTTGCAATTTCTCGTTTGT
1 ATGTTCGACGTTCAGCAATTCGGAGAATCGTACCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
*
1521543 GCAAAATAATCGAATATCCCTTT-GAAATTTCATTCACGTTTTC
66 CCAAAATAATCGAATATCCCTTTAG-AATTTCATTCACGTTTTC
1521586 CAAAGCGAGA
Statistics
Matches: 92, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
131 1 0.01
132 91 0.99
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (132 bp):
ATGTTCGACGTTCAGCAATTCGGAGAATCGTACCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
CCAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAACCTTTTAAAACGAAGG
AA
Found at i:1532814 original size:44 final size:44
Alignment explanation
Indices: 1532583--1533790 Score: 1605
Period size: 44 Copynumber: 28.2 Consensus size: 44
1532573 TCCTTGAAAC
* * *
1532583 AGATAACAGATTTGGCGTCTCTATAGCGGCGAAAAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1532627 AGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * * * *
1532667 AGAT----GATTTCGCATCTCTATAGCGGCAGAGAGTAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1532707 AGAT---A-ATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1532747 AGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
1532787 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1532831 AGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * *
1532875 AGGTAACAAGATTTGGCGTCTCTGTAGCGGCGAAAAGCAGATCGA
1 AGATAAC-AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1532920 AGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCG-
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
1532959 A-A-AA-TGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * *
1533000 ATATAACAGATTTGGTGTCTCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533044 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533088 AGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533128 AGGTAACAAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAAC-AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533173 AGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
1533213 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAAAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533257 AGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
1533301 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * * * *
1533345 AGGTAACAAGATTTGGCTTCTCTATAGCGGCGAAAAGCAGATCGA
1 AGATAAC-AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533390 AGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
1533430 AGAT----GATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * *
1533470 AGATAACAGATTTGGAGTCTCTGAAGCGGTGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
1533514 AGATAACAGATTTGGCATCTCTGTAGCGACGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
1533558 AGGTAACAAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
1 AGATAAC-AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
1533603 AGATAATAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * * *
1533647 AGGTAACAAAATTTGGCGTCTCTGTAACGGCGGAGAGCAGATCAA
1 AGATAAC-AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533692 AGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533736 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
1533780 AAATAACAGAT
1 AGATAACAGAT
1533791 CGGTGTTCCT
Statistics
Matches: 1046, Mismatches: 88, Indels: 60
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
40 364 0.35
41 1 0.00
42 1 0.00
43 2 0.00
44 487 0.47
45 189 0.18
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (44 bp):
AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
Found at i:1532946 original size:213 final size:214
Alignment explanation
Indices: 1532583--1533780 Score: 1661
Period size: 213 Copynumber: 5.6 Consensus size: 214
1532573 TCCTTGAAAC
* *
1532583 AGATAACAGATTTGGCGTCTCTATAGCGGC-GAAAAGCAGATCGAAGAT----GATTTGGCATCT
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAG-AGAGCAGATCGAAGATAACAGATTTGGCATCT
* * *
1532643 CTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTCGCATCTCTATAGCGGC-AGAGAGTAGA
65 CTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGA-AGAGCAGA
*
1532703 TCGAA-GATA-ATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTG
129 TCGAAGGAAAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTG
1532766 TAGCGGCGGAGAGCAGATCGA
194 TAGCGGCGGAGAGCAGATCGA
*
1532787 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAACAGATTTGGCATCTC
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTC
* * *
1532852 TGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGCGGCGAAAAGCAGAT
66 TGTAGCGGCGGAGAGCAGATCGAAGATAAC-AGATTTGGCATCTCTGTAGCGGCGAAGAGCAGAT
* *
1532917 CGAA-G-ATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAAATGATTTGGCATCTCTGT
130 CGAAGGAAAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGT
1532980 AGCGGCGGAGAGCAGATCGA
195 AGCGGCGGAGAGCAGATCGA
* * *
1533000 ATATAACAGATTTGGTGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTC
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTC
* *
1533065 TGTAGCGGCGGAGAACAGATCGAAGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATC
66 TGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGAAGAGCAGATC
*
1533126 GAAGGTAACAAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCT
131 GAAGG--A-AAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCT
1533191 GTAGCGGCGGAGAGCAGATCGA
193 GTAGCGGCGGAGAGCAGATCGA
* *
1533213 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAAAGCAGATCGAAGATAACAGATTTGGCGTCTC
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTC
* * *
1533278 TATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATC
66 TGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGAAGAGCAGATC
* * * *
1533343 GAAGGTAACAAGATTTGGCTTCTCTATAGCGGCGAAAAGCAGATCGAAGATGATTTGGCATCTCT
131 GAAGG--A-AAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCT
1533408 GTAGCGGCGGAGAGCAGATCGA
193 GTAGCGGCGGAGAGCAGATCGA
* **
1533430 AGAT----GATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGG-AGTCT
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA-TCT
* * * *
1533490 CTGAAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGACGGAGAGCAGAT
65 CTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGAAGAGCAGAT
* *
1533555 CGAAGGTAACAAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAATAGATTTGGCA
130 CGAAGG--A-AAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAG---AT-GATTTGGCA
1533620 TCTCTGTAGCGGCGGAGAGCAGATCGA
188 TCTCTGTAGCGGCGGAGAGCAGATCGA
* * * * * *
1533647 AGGTAACAAAATTTGGCGTCTCTGTAACGGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCT
1 AGATAAC-AGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCT
* *
1533712 CCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC-AGAGAGCAGA
65 CTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGA-AGAGCAGA
1533776 TCGAA
129 TCGAA
1533781 AATAACAGAT
Statistics
Matches: 899, Mismatches: 62, Indels: 48
0.89 0.06 0.05
Matches are distributed among these distances:
204 43 0.05
205 1 0.00
208 73 0.08
209 1 0.00
213 508 0.57
214 1 0.00
216 2 0.00
217 159 0.18
222 111 0.12
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (214 bp):
AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTC
TGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGAAGAGCAGATC
GAAGGAAAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTA
GCGGCGGAGAGCAGATCGA
Found at i:1533227 original size:257 final size:259
Alignment explanation
Indices: 1532590--1533790 Score: 1687
Period size: 257 Copynumber: 4.7 Consensus size: 259
1532580 AACAGATAAC
* * * * * *
1532590 AGATTTGGCGTCTCTATAGCGGCGAAAAGCAGATCGAA-G----ATGATTTGGCATCTCTGTAGC
1 AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGC
* * * *
1532650 GGCGGAGAGCAGATCGAAGATGATTTCGCATCTCTATAGCGGCAGAGAGTAGATCGAAGAT---A
66 GGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1532712 -ATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGG
131 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
* *
1532772 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAA
196 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAG--AA
*
1532837 C
259 T
1532838 AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGC
1 AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGC
* * *
1532903 GGCGAAAAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCG-A-A-AA-T
66 GGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* **
1532964 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAATATAACAGATTTGGTGTCTCTGTAGCGG
131 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
* *
1533029 CAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGAAG-AT
196 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAAT
1533092 -GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGC
1 AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGC
1533156 GGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
66 GGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
1533221 GATTTGGCGTCTCTGTAGCGGCAGAAAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGG
131 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
1533286 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAA
196 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAA-G-AA
*
1533351 CA
259 -T
* * * * * *
1533353 AGATTTGGCTTCTCTATAGCGGCGAAAAGCAGATCGAA-G----ATGATTTGGCATCTCTGTAGC
1 AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGC
*
1533413 GGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACA
66 GGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
1533478 GATTTGG-AGTCTCTGAAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCG
131 GATTTGGCA-TCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCG
* * *
1533542 ACGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGAT
195 GCGGAGAGCAGATCGAAGATAAC-AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAG--
1533607 AAT
257 AAT
* *
1533610 AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAAATTTGGCGTCTCTGTAAC
1 AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGC
* * *
1533675 GGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGAT
66 GGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
* * *
1533740 AACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAAATAACAGAT
127 AACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGAT
1533791 CGGTGTTCCT
Statistics
Matches: 851, Mismatches: 68, Indels: 50
0.88 0.07 0.05
Matches are distributed among these distances:
248 34 0.04
249 1 0.00
251 1 0.00
252 1 0.00
253 225 0.26
254 2 0.00
255 1 0.00
256 2 0.00
257 388 0.46
258 42 0.05
260 1 0.00
261 1 0.00
262 70 0.08
266 82 0.10
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (259 bp):
AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGGTAACAAGATTTGGCGTCTCTGTAGC
GGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAAT
Found at i:1534274 original size:24 final size:24
Alignment explanation
Indices: 1534246--1534336 Score: 121
Period size: 24 Copynumber: 3.7 Consensus size: 24
1534236 TGTTTTTGGG
*
1534246 GGTTTTTTTTTGTTTATTGGAGG-
1 GGTTTTTTTTTGTTTTTTGGAGGA
1534269 GTGTTTTTTTTTGTTTTTTGGAGGA
1 G-GTTTTTTTTTGTTTTTTGGAGGA
1534294 GGTTTGTTTTTTTGTTTTTTGGAGGA
1 GG-TT-TTTTTTTGTTTTTTGGAGGA
*
1534320 GGGTTGTTTTTTGTTTT
1 -GGTTTTTTTTTGTTTT
1534337 GGAAAGGCTA
Statistics
Matches: 61, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
23 1 0.02
24 22 0.36
25 14 0.23
26 22 0.36
27 2 0.03
ACGTcount: A:0.07, C:0.00, G:0.30, T:0.64
Consensus pattern (24 bp):
GGTTTTTTTTTGTTTTTTGGAGGA
Found at i:1534303 original size:26 final size:26
Alignment explanation
Indices: 1534250--1534336 Score: 119
Period size: 26 Copynumber: 3.5 Consensus size: 26
1534240 TTTGGGGGTT
*
1534250 TTTTTTTGTTTATTGGA-G-GGTGTT-
1 TTTTTTTGTTTTTTGGAGGAGGT-TTG
1534274 TTTTTTTGTTTTTTGGAGGAGGTTTG
1 TTTTTTTGTTTTTTGGAGGAGGTTTG
*
1534300 TTTTTTTGTTTTTTGGAGGAGGGTTG
1 TTTTTTTGTTTTTTGGAGGAGGTTTG
1534326 -TTTTTTGTTTT
1 TTTTTTTGTTTT
1534337 GGAAAGGCTA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
24 16 0.28
25 14 0.24
26 28 0.48
ACGTcount: A:0.07, C:0.00, G:0.29, T:0.64
Consensus pattern (26 bp):
TTTTTTTGTTTTTTGGAGGAGGTTTG
Found at i:1534667 original size:9 final size:9
Alignment explanation
Indices: 1534645--1534695 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
1534635 GAGCTTTGTT
*
1534645 TTATTTTTT
1 TTATTTTTA
1534654 TTATTTTTA
1 TTATTTTTA
*
1534663 CTATTATTTA
1 TTATT-TTTA
*
1534673 -TATTATTA
1 TTATTTTTA
*
1534681 TTATTATTA
1 TTATTTTTA
1534690 TTATTT
1 TTATTT
1534696 CTCATGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
8 3 0.08
9 29 0.81
10 4 0.11
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (9 bp):
TTATTTTTA
Found at i:1534671 original size:12 final size:12
Alignment explanation
Indices: 1534654--1534695 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
1534644 TTTATTTTTT
*
1534654 TTATTTTTACTA
1 TTATTTTTATTA
*
1534666 TTATTTATATTA
1 TTATTTTTATTA
*
1534678 TTATTATTATTA
1 TTATTTTTATTA
1534690 TTATTT
1 TTATTT
1534696 CTCATGTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATTTTTATTA
Found at i:1534815 original size:83 final size:83
Alignment explanation
Indices: 1534666--1534818 Score: 186
Period size: 83 Copynumber: 1.8 Consensus size: 83
1534656 ATTTTTACTA
* * * *
1534666 TTATTTATATTATTATTATTATTATTATTTCTCATGTATATATTGTTATTTATATTATTATATTA
1 TTATTTATATTATTATTATCATTATTATTACTCATGTATATATTGTTATTTATACTACTATATTA
1534731 TATATGCCCTCTCCATAT
66 TATATGCCCTCTCCATAT
* * * *
1534749 TTATTTATATTATTATTATCATTATTGTTACTTC-TGT-TAT-TTTTTATTTCTGACTACTATTT
1 TTATTTATATTATTATTATCATTATTATTAC-TCATGTATATATTGTTATTTAT-ACTACTA-TA
1534811 TTATATAT
63 TTATATAT
1534819 ATATATTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
81 9 0.15
82 8 0.14
83 40 0.68
84 2 0.03
ACGTcount: A:0.27, C:0.09, G:0.04, T:0.60
Consensus pattern (83 bp):
TTATTTATATTATTATTATCATTATTATTACTCATGTATATATTGTTATTTATACTACTATATTA
TATATGCCCTCTCCATAT
Found at i:1536690 original size:40 final size:40
Alignment explanation
Indices: 1536635--1536828 Score: 280
Period size: 40 Copynumber: 4.8 Consensus size: 40
1536625 TTCGGATGAT
1536635 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
*
1536675 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
**
1536715 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
** * * *
1536755 ATTCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* * * *
1536795 AATCAGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
1536829 AGCTATATCC
Statistics
Matches: 140, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:1538291 original size:3 final size:3
Alignment explanation
Indices: 1538283--1538321 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
1538273 TGTATTTCTA
* *
1538283 TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1538322 CATTGTTTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:1538852 original size:132 final size:132
Alignment explanation
Indices: 1538627--1538865 Score: 363
Period size: 132 Copynumber: 1.8 Consensus size: 132
1538617 ACGGAGATGT
* * *
1538627 TGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGTTGGGTTGCAATTTCTTGTTTGCC
1 TGTTCGACGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCC
* * * * *
1538692 CAAAATAATCGGATGTCTCTTTAGAATTTCGTTCATGTTTTCTAAAAACCTTTTAAAACGAAGGA
66 CAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAACCTTTTAAAACGAAGGA
1538757 AA
131 AA
* **
1538759 TGTTCGACGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTG
1 TGTTCGACGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCC
1538824 CAAAATAATCGAATATCCCTTT-GAAATTTCATTCACGTTTTC
66 CAAAATAATCGAATATCCCTTTAG-AATTTCATTCACGTTTTC
1538866 CAAAGCGAGA
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
131 1 0.01
132 94 0.99
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.37
Consensus pattern (132 bp):
TGTTCGACGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCC
CAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAACCTTTTAAAACGAAGGA
AA
Found at i:1539409 original size:8 final size:8
Alignment explanation
Indices: 1539396--1539420 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
1539386 ATTACCCCTT
1539396 TTTTTAAA
1 TTTTTAAA
1539404 TTTTTAAA
1 TTTTTAAA
1539412 TTTTTAAA
1 TTTTTAAA
1539420 T
1 T
1539421 CGAGGAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTTTAAA
Found at i:1539837 original size:16 final size:16
Alignment explanation
Indices: 1539795--1539837 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
1539785 TCCCTCTCCC
1539795 TCTTTCTTTTCTCTTT
1 TCTTTCTTTTCTCTTT
*
1539811 TCATTT-TTTTTTCTTT
1 TC-TTTCTTTTCTCTTT
1539827 TCTTTCATTTT
1 TCTTTC-TTTT
1539838 AAATTATGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 3 0.13
16 13 0.57
17 7 0.30
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (16 bp):
TCTTTCTTTTCTCTTT
Found at i:1540319 original size:13 final size:13
Alignment explanation
Indices: 1540301--1540325 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1540291 TATAAGATTA
1540301 ATAAGTGTTGAGT
1 ATAAGTGTTGAGT
1540314 ATAAGTGTTGAG
1 ATAAGTGTTGAG
1540326 GGACAACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (13 bp):
ATAAGTGTTGAGT
Found at i:1542180 original size:16 final size:16
Alignment explanation
Indices: 1542161--1542191 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1542151 TATTTAATGT
*
1542161 TATTTAATCTTAAAAA
1 TATTTAATATTAAAAA
1542177 TATTTAATATTAAAA
1 TATTTAATATTAAAA
1542192 CAATACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:1545693 original size:22 final size:23
Alignment explanation
Indices: 1545668--1545714 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
1545658 ATAGACATAG
* *
1545668 TAAATTAAA-TTATAATTTTTTT
1 TAAAATAAAGTTATAATTTTGTT
1545690 TAAAATAAAGTTATAATTTTGTT
1 TAAAATAAAGTTATAATTTTGTT
1545713 TA
1 TA
1545715 TTTTATTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
TAAAATAAAGTTATAATTTTGTT
Found at i:1555783 original size:30 final size:30
Alignment explanation
Indices: 1555733--1555790 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
1555723 AAGAGTTGTG
1555733 GAAATTTATATTGAAAAGGTTGGAAATGTA
1 GAAATTTATATTGAAAAGGTTGGAAATGTA
1555763 GAAACTTTATATTG-AAAGGTTGGAAATG
1 GAAA-TTTATATTGAAAAGGTTGGAAATG
1555791 ATTTGTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 18 0.67
31 9 0.33
ACGTcount: A:0.41, C:0.02, G:0.24, T:0.33
Consensus pattern (30 bp):
GAAATTTATATTGAAAAGGTTGGAAATGTA
Found at i:1556579 original size:31 final size:30
Alignment explanation
Indices: 1556527--1556602 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
1556517 TTATTTGATC
*
1556527 AATTTTAGTCCCTAGAATTTTTGAATTG-GTA
1 AATTTTAGT-CCTAGAATTTTTAAATTGTG-A
* * *
1556558 AATTTTAGTCCTTGTACTTTTTAAATTTTGA
1 AATTTTAGTCCTAG-AATTTTTAAATTGTGA
1556589 AATTTTAGTCCTAG
1 AATTTTAGTCCTAG
1556603 CCCAAACAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
30 4 0.11
31 33 0.87
32 1 0.03
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.49
Consensus pattern (30 bp):
AATTTTAGTCCTAGAATTTTTAAATTGTGA
Found at i:1557886 original size:51 final size:51
Alignment explanation
Indices: 1557826--1558051 Score: 278
Period size: 51 Copynumber: 4.7 Consensus size: 51
1557816 TACAAATCAA
* *
1557826 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTACATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
*
1557877 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
*
1557928 ATCTCTAA-AAT-T---AT-A-A---TATAATA-T-CATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* * *
1557967 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* * *
1558018 ATCTCTAAGATTATAAAATCATATCTTTTAAGAT
1 ATCTCTAAGAATATAAAATAATATCTTATAAGAT
1558052 CATGTTTCCA
Statistics
Matches: 154, Mismatches: 9, Indels: 24
0.82 0.05 0.13
Matches are distributed among these distances:
39 23 0.15
40 3 0.02
41 7 0.05
44 3 0.02
45 2 0.01
46 3 0.02
49 7 0.05
50 4 0.03
51 102 0.66
ACGTcount: A:0.43, C:0.13, G:0.05, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
Found at i:1557902 original size:22 final size:22
Alignment explanation
Indices: 1557826--1557902 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
1557816 TACAAATCAA
*
1557826 ATCTCTAAGAATATAAAATCAT
1 ATCTCTAAGAATATAAAATAAT
** *
1557848 ATCTTCTAAGATTACATATCATATCTAAG
1 ATC-TCTAAG---A-ATAT-A-AAATAAT
1557877 ATCTCTAAGAATATAAAATAAT
1 ATCTCTAAGAATATAAAATAAT
1557899 ATCT
1 ATCT
1557903 TATAAGATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 11 0.27
23 7 0.17
24 4 0.10
25 1 0.02
26 1 0.02
27 4 0.10
28 7 0.17
29 6 0.15
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.35
Consensus pattern (22 bp):
ATCTCTAAGAATATAAAATAAT
Found at i:1557957 original size:39 final size:39
Alignment explanation
Indices: 1557912--1557991 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
1557902 TTATAAGATT
1557912 TCATATCATATCTAAGATCTCTAAAATTATAATATAATA
1 TCATATCATATCTAAGATCTCTAAAATTATAATATAATA
*
1557951 TCATATCATATCTAAGATCTCTAAGATTATAATATAATA
1 TCATATCATATCTAAGATCTCTAAAATTATAATATAATA
1557990 TC
1 TC
1557992 TTATAAGATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.14, G:0.04, T:0.39
Consensus pattern (39 bp):
TCATATCATATCTAAGATCTCTAAAATTATAATATAATA
Found at i:1558011 original size:90 final size:90
Alignment explanation
Indices: 1557862--1558042 Score: 308
Period size: 90 Copynumber: 2.0 Consensus size: 90
1557852 TCTAAGATTA
*
1557862 CATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAA
1 CATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTAA
*
1557927 GATCTCTAAAATTATAATATAATAT
66 GATCTCTAAAATTATAAAATAATAT
* *
1557952 CATATCATATCTAAGATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAA
1 CATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTAA
* *
1558017 GATCTCTAAGATTATAAAATCATAT
66 GATCTCTAAAATTATAAAATAATAT
1558042 C
1 C
1558043 TTTTAAGATC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.38
Consensus pattern (90 bp):
CATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTAA
GATCTCTAAAATTATAAAATAATAT
Found at i:1559122 original size:96 final size:95
Alignment explanation
Indices: 1558956--1559148 Score: 235
Period size: 96 Copynumber: 2.0 Consensus size: 95
1558946 TCGCTTCTTT
* * * * *
1558956 TTGCTCCTTTTAGCCCTCTTGGCTTCGACTTTACCCTTGTTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTTTTAGCCCTCTTGGCTTCGACTTTACCCTTGCTAGAACCAAGCTTCCTAGGCTCCGT
* * * *
1559021 GTCTGCTCCATCGTTCCCTTCGATGACAGAC
66 ATCTGCT-CATCATTCCCATCGATAACAGAC
* * * *
1559052 TTGCTCCTCTTT-GCCCTCTTGGCTTCGGCTTTTCTCTTGCTAGAACCAAGCTTCCTAGGCTTCG
1 TTGCTCCT-TTTAGCCCTCTTGGCTTCGACTTTACCCTTGCTAGAACCAAGCTTCCTAGGCTCCG
*
1559116 TATCTGCTGATCATTCCCATCGATAACAGAC
65 TATCTGCTCATCATTCCCATCGATAACAGAC
1559147 TT
1 TT
1559149 CTTCGGACAC
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
95 21 0.26
96 58 0.71
97 3 0.04
ACGTcount: A:0.14, C:0.32, G:0.17, T:0.37
Consensus pattern (95 bp):
TTGCTCCTTTTAGCCCTCTTGGCTTCGACTTTACCCTTGCTAGAACCAAGCTTCCTAGGCTCCGT
ATCTGCTCATCATTCCCATCGATAACAGAC
Found at i:1560855 original size:51 final size:51
Alignment explanation
Indices: 1560795--1560979 Score: 289
Period size: 51 Copynumber: 3.6 Consensus size: 51
1560785 TACAAATCAA
* *
1560795 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTACATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
*
1560846 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* * *
1560897 ATCTCTAAGATTATAATATAATATCTTATAAGATTGCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* * *
1560948 ATCTCTAAGATTATAAAATCATATCTTTTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAG
1560980 CTCATGTTTC
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 125 1.00
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
Found at i:1560871 original size:22 final size:22
Alignment explanation
Indices: 1560795--1560871 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
1560785 TACAAATCAA
*
1560795 ATCTCTAAGAATATAAAATCAT
1 ATCTCTAAGAATATAAAATAAT
** *
1560817 ATCTTCTAAGATTACATATCATATCTAAG
1 ATC-TCTAAG---A-ATAT-A-AAATAAT
1560846 ATCTCTAAGAATATAAAATAAT
1 ATCTCTAAGAATATAAAATAAT
1560868 ATCT
1 ATCT
1560872 TATAAGATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 11 0.27
23 7 0.17
24 4 0.10
25 1 0.02
26 1 0.02
27 4 0.10
28 7 0.17
29 6 0.15
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.35
Consensus pattern (22 bp):
ATCTCTAAGAATATAAAATAAT
Found at i:1560891 original size:22 final size:22
Alignment explanation
Indices: 1560866--1560944 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
1560856 ATATAAAATA
1560866 ATATCTTATAAGATTTCATATC
1 ATATCTTATAAGATTTCATATC
* * *
1560888 ATATCTAAGATCTCTAAGATTATAATATA
1 ATATC-----T-TATAAGATT-TCATATC
*
1560917 ATATCTTATAAGATTGCATATC
1 ATATCTTATAAGATTTCATATC
1560939 ATATCT
1 ATATCT
1560945 AAGATCTCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
22 15 0.35
23 8 0.19
24 1 0.02
27 1 0.02
28 8 0.19
29 10 0.23
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (22 bp):
ATATCTTATAAGATTTCATATC
Found at i:1560920 original size:29 final size:29
Alignment explanation
Indices: 1560821--1560922 Score: 85
Period size: 29 Copynumber: 3.8 Consensus size: 29
1560811 AATCATATCT
* *
1560821 TCTAAGATTA-CATATCATATCTAAGATC
1 TCTAAGATTATAATATAATATCTAAGATC
* *
1560849 TCTAAGAATATAAAATAATATC-----T-
1 TCTAAGATTATAATATAATATCTAAGATC
* * *
1560872 TATAAGATT-TCATATCATATCTAAGATC
1 TCTAAGATTATAATATAATATCTAAGATC
1560900 TCTAAGATTATAATATAATATCT
1 TCTAAGATTATAATATAATATCT
1560923 TATAAGATTG
Statistics
Matches: 54, Mismatches: 12, Indels: 15
0.67 0.15 0.19
Matches are distributed among these distances:
22 9 0.17
23 7 0.13
24 1 0.02
27 1 0.02
28 17 0.31
29 19 0.35
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (29 bp):
TCTAAGATTATAATATAATATCTAAGATC
Found at i:1566504 original size:12 final size:12
Alignment explanation
Indices: 1566489--1566513 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1566479 TAATCCTGAT
1566489 TCTAAAAAATTA
1 TCTAAAAAATTA
1566501 TCTAAAAAATTA
1 TCTAAAAAATTA
1566513 T
1 T
1566514 AAAATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (12 bp):
TCTAAAAAATTA
Found at i:1570887 original size:31 final size:29
Alignment explanation
Indices: 1570802--1570893 Score: 73
Period size: 31 Copynumber: 3.1 Consensus size: 29
1570792 ATGTAATTTA
*
1570802 ATATATGAACTTTAA-TTTGATGCAATCAT
1 ATATATGAACTTTAATTTTGATTCAA-CAT
* * * *
1570831 ATACATGGAACTTTACTTGTAATTCAA-AT
1 ATATAT-GAACTTTAATTTTGATTCAACAT
1570860 GGATATATGAAACTTTAATTTTGATTCAAC-T
1 --ATATATG-AACTTTAATTTTGATTCAACAT
1570891 ATA
1 ATA
1570894 CATATTTATT
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
29 10 0.21
30 9 0.19
31 29 0.60
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (29 bp):
ATATATGAACTTTAATTTTGATTCAACAT
Found at i:1582272 original size:17 final size:17
Alignment explanation
Indices: 1582250--1582307 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
1582240 TAATTTTTTG
1582250 GTAGTCATTTTACTAAT
1 GTAGTCATTTTACTAAT
* *** **
1582267 GTAGTCGTTTCGTTTTT
1 GTAGTCATTTTACTAAT
1582284 GGTAGTCATTTTACTAAT
1 -GTAGTCATTTTACTAAT
1582302 GTAGTC
1 GTAGTC
1582308 GTTTCGGTTT
Statistics
Matches: 28, Mismatches: 12, Indels: 2
0.67 0.29 0.05
Matches are distributed among these distances:
17 17 0.61
18 11 0.39
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48
Consensus pattern (17 bp):
GTAGTCATTTTACTAAT
Found at i:1582283 original size:35 final size:35
Alignment explanation
Indices: 1582244--1582313 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
1582234 TCTTTTTAAT
1582244 TTTTTGGTAGTCATTTTACTAATGTAGTCGTTTCG
1 TTTTTGGTAGTCATTTTACTAATGTAGTCGTTTCG
1582279 TTTTTGGTAGTCATTTTACTAATGTAGTCGTTTCG
1 TTTTTGGTAGTCATTTTACTAATGTAGTCGTTTCG
1582314 GTTTACTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.51
Consensus pattern (35 bp):
TTTTTGGTAGTCATTTTACTAATGTAGTCGTTTCG
Found at i:1591222 original size:19 final size:19
Alignment explanation
Indices: 1591198--1591236 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
1591188 TTAATTTGGA
*
1591198 TAAATTTTGAATTTAAATT
1 TAAATTTTAAATTTAAATT
*
1591217 TAAATTTTAAATTTAGATT
1 TAAATTTTAAATTTAAATT
1591236 T
1 T
1591237 TGTAAATAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TAAATTTTAAATTTAAATT
Found at i:1592043 original size:27 final size:27
Alignment explanation
Indices: 1592005--1592058 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
1591995 TTCTAAATCA
1592005 GTCTTAAGTTTCAAAACGTTATAATTG
1 GTCTTAAGTTTCAAAACGTTATAATTG
1592032 GTCTTAAGTTTCAAAACGTTATAATTG
1 GTCTTAAGTTTCAAAACGTTATAATTG
1592059 AACTTTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (27 bp):
GTCTTAAGTTTCAAAACGTTATAATTG
Found at i:1612110 original size:14 final size:14
Alignment explanation
Indices: 1612087--1612117 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1612077 TTGAAAATAT
1612087 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
1612101 GTTGATTTGGATTG
1 GTTGAATTGGATTG
1612115 GTT
1 GTT
1612118 TCGATATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.48
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:1616338 original size:19 final size:19
Alignment explanation
Indices: 1616314--1616356 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
1616304 CTGCAGTGTT
1616314 GAAAATATTAAATGTTTTC
1 GAAAATATTAAATGTTTTC
1616333 GAAAATATTAAATGTTTTC
1 GAAAATATTAAATGTTTTC
1616352 GAAAA
1 GAAAA
1616357 ATTTTCTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.37
Consensus pattern (19 bp):
GAAAATATTAAATGTTTTC
Found at i:1619818 original size:31 final size:31
Alignment explanation
Indices: 1619783--1619844 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
1619773 TTATGGTAGT
*
1619783 AGAGGGGCTACAGTCAAAATTTGACCAAATA
1 AGAGGGGCTAAAGTCAAAATTTGACCAAATA
1619814 AGAGGGGCTAAAGTCAAAATTTGACCAAATA
1 AGAGGGGCTAAAGTCAAAATTTGACCAAATA
1619845 TATTTACATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.19
Consensus pattern (31 bp):
AGAGGGGCTAAAGTCAAAATTTGACCAAATA
Found at i:1628454 original size:27 final size:26
Alignment explanation
Indices: 1628385--1628479 Score: 72
Period size: 26 Copynumber: 3.7 Consensus size: 26
1628375 TTAATTATTT
* *
1628385 TTTAAAATTTTAAAA-TATTAAAA-A
1 TTTAATATTTTAAAATTTTTAAAATA
* * *
1628409 TAT-ATATATTAATACATTTTTAATAGT-
1 TTTAATATTTTAA-A-ATTTTTAA-AATA
1628436 TTTAATGATTTTAAAATTTTTAAAATA
1 TTTAAT-ATTTTAAAATTTTTAAAATA
*
1628463 TTTAATTTTTTAAAATT
1 TTTAATATTTTAAAATT
1628480 AATTAAATGC
Statistics
Matches: 54, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
23 7 0.13
24 3 0.06
25 1 0.02
26 17 0.31
27 17 0.31
28 3 0.06
29 6 0.11
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (26 bp):
TTTAATATTTTAAAATTTTTAAAATA
Found at i:1628485 original size:18 final size:17
Alignment explanation
Indices: 1628452--1628485 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1628442 GATTTTAAAA
*
1628452 TTTTTAAAATATTTAAT
1 TTTTTAAAATAATTAAT
1628469 TTTTTAAAATTAATTAA
1 TTTTTAAAA-TAATTAA
1628486 ATGCTAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTAAAATAATTAAT
Found at i:1637796 original size:52 final size:52
Alignment explanation
Indices: 1637734--1637838 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
1637724 TTAAATATCA
1637734 AGCTAACAAACTTAATTCGGTGAACTGTGTTTTAAGTATTAATTATGATAAT
1 AGCTAACAAACTTAATTCGGTGAACTGTGTTTTAAGTATTAATTATGATAAT
1637786 AGCTAACAAACTTAATTCGGTGAACTGTGTTTTAAGTATTAATTATGATAAT
1 AGCTAACAAACTTAATTCGGTGAACTGTGTTTTAAGTATTAATTATGATAAT
1637838 A
1 A
1637839 TTTCAAGCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (52 bp):
AGCTAACAAACTTAATTCGGTGAACTGTGTTTTAAGTATTAATTATGATAAT
Found at i:1640134 original size:30 final size:30
Alignment explanation
Indices: 1640098--1640158 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
1640088 CACGGGCTGG
*
1640098 CACATGGGCATGTGGCCTGCCCGTGTGGAT
1 CACATGGCCATGTGGCCTGCCCGTGTGGAT
* *
1640128 CACATGGCCATGTGGCCTTCTCGTGTGGAT
1 CACATGGCCATGTGGCCTGCCCGTGTGGAT
1640158 C
1 C
1640159 CTGAAAACTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.13, C:0.28, G:0.33, T:0.26
Consensus pattern (30 bp):
CACATGGCCATGTGGCCTGCCCGTGTGGAT
Found at i:1644909 original size:29 final size:29
Alignment explanation
Indices: 1644837--1644948 Score: 111
Period size: 29 Copynumber: 3.9 Consensus size: 29
1644827 ACCCCTACAT
* *
1644837 ACATGCATATGGCCCACTAGGCCCAA-TC
1 ACATTCATATGACCCACTAGGCCCAATTC
* * *
1644865 TCATTCATATGGCCCATCT-GGCCCAGTTC
1 ACATTCATATGACCCA-CTAGGCCCAATTC
* *
1644894 ATATTCTTATGACCCACTAGGCCCAATTC
1 ACATTCATATGACCCACTAGGCCCAATTC
* * *
1644923 ACATTCATATGGCACATTAGGCCCAA
1 ACATTCATATGACCCACTAGGCCCAA
1644949 ATCATATTAT
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
28 22 0.32
29 46 0.68
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGACCCACTAGGCCCAATTC
Found at i:1644946 original size:58 final size:57
Alignment explanation
Indices: 1644844--1644956 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
1644834 CATACATGCA
* * * **
1644844 TATGGCCCACTAGGCCCAATCTCATTCATATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGACCCACTAGGCCCAATCACATTCATATGGCACATCTGGCCCAAATCATATTCT
1644901 TATGACCCACTAGGCCCAATTCACATTCATATGGCACAT-TAGGCCCAAATCATATT
1 TATGACCCACTAGGCCCAA-TCACATTCATATGGCACATCT-GGCCCAAATCATATT
1644957 ATACTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 19 0.39
58 30 0.61
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (57 bp):
TATGACCCACTAGGCCCAATCACATTCATATGGCACATCTGGCCCAAATCATATTCT
Found at i:1645210 original size:24 final size:24
Alignment explanation
Indices: 1645152--1645202 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
1645142 ACTTTTGGTA
*
1645152 TTTCGGTATTTCGGCATTTTAGCT
1 TTTCAGTATTTCGGCATTTTAGCT
*
1645176 TTTCAGTATTTCGGCATTTTGGCT
1 TTTCAGTATTTCGGCATTTTAGCT
1645200 TTT
1 TTT
1645203 GCTGATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.16, G:0.20, T:0.53
Consensus pattern (24 bp):
TTTCAGTATTTCGGCATTTTAGCT
Found at i:1655221 original size:30 final size:30
Alignment explanation
Indices: 1655185--1655242 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
1655175 ACATGCCATT
1655185 TATTAGTTAAATTAACGGTTTCCATAACAG
1 TATTAGTTAAATTAACGGTTTCCATAACAG
1655215 TATTAGTTAAATTAACGGTTTCCATAAC
1 TATTAGTTAAATTAACGGTTTCCATAAC
1655243 GGTAATGCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (30 bp):
TATTAGTTAAATTAACGGTTTCCATAACAG
Found at i:1655834 original size:19 final size:19
Alignment explanation
Indices: 1655810--1655848 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
1655800 CATCTTTCCA
1655810 TTCCTAATCACATTTTTTC
1 TTCCTAATCACATTTTTTC
1655829 TTCCTAATCACATTTTTTC
1 TTCCTAATCACATTTTTTC
1655848 T
1 T
1655849 CTCTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.54
Consensus pattern (19 bp):
TTCCTAATCACATTTTTTC
Found at i:1660472 original size:39 final size:39
Alignment explanation
Indices: 1660412--1660500 Score: 151
Period size: 39 Copynumber: 2.3 Consensus size: 39
1660402 GCTCTGATGA
* *
1660412 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGC
*
1660451 GCTTTAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGC
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGC
1660490 GCTTCAGTTAG
1 GCTTCAGTTAG
1660501 ATTTCGGGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGC
Found at i:1660494 original size:21 final size:20
Alignment explanation
Indices: 1660429--1660494 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
1660419 TTAGCCTTCG
1660429 GGCTTCCGTTTAGCACTTAT
1 GGCTTCCGTTTAGCACTTAT
**
1660449 GTGCTTTAG-TTAGC-CTTCA-
1 G-GCTTCCGTTTAGCACTT-AT
1660468 GGCTTCCGTTTAGCACTTAT
1 GGCTTCCGTTTAGCACTTAT
1660488 GCGCTTC
1 G-GCTTC
1660495 AGTTAGATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 11
0.71 0.08 0.22
Matches are distributed among these distances:
18 5 0.14
19 10 0.28
20 11 0.31
21 10 0.28
ACGTcount: A:0.14, C:0.26, G:0.21, T:0.39
Consensus pattern (20 bp):
GGCTTCCGTTTAGCACTTAT
Found at i:1666809 original size:18 final size:18
Alignment explanation
Indices: 1666786--1666878 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
1666776 CCCAACTACT
*
1666786 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
1666804 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
1666822 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* * *
1666840 ATATATGTGAATAGTGCC
1 GTATACGTGAATAGTACC
1666858 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
1666876 GTA
1 GTA
1666879 AACGGTCGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:1666838 original size:36 final size:36
Alignment explanation
Indices: 1666787--1666878 Score: 148
Period size: 36 Copynumber: 2.6 Consensus size: 36
1666777 CCAACTACTG
*
1666787 TATACGTGAACAGTACCGTATACGTGAATAGTGCCA
1 TATACGTGAATAGTACCGTATACGTGAATAGTGCCA
* * *
1666823 TATACGTGAATAGTACCATATATGTGAATAGTGCCG
1 TATACGTGAATAGTACCGTATACGTGAATAGTGCCA
1666859 TATACGTGAATAGTACCGTA
1 TATACGTGAATAGTACCGTA
1666879 AACGGTCGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (36 bp):
TATACGTGAATAGTACCGTATACGTGAATAGTGCCA
Found at i:1678712 original size:18 final size:18
Alignment explanation
Indices: 1678661--1678722 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
1678651 TATCGATATC
*
1678661 ATTCAGTAACAATCAATT
1 ATTCAGTAACAATCAGTT
* * *
1678679 TTTCAATAGCAATCAGTT
1 ATTCAGTAACAATCAGTT
* *
1678697 ATTCAGTAACAGTCAGTC
1 ATTCAGTAACAATCAGTT
1678715 ATTCAGTA
1 ATTCAGTA
1678723 CCTTTATCCA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (18 bp):
ATTCAGTAACAATCAGTT
Found at i:1678929 original size:44 final size:44
Alignment explanation
Indices: 1678875--1678966 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
1678865 CCGATGTAAT
* * *
1678875 AGTAATAGTACGACACACATGGTGCCTCATCGACTTGAA-GTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGAC-TCAAGGTCGA
** *
1678919 AGTAACAGTACGACACTTATAGTGCCTCATTGACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAGGTCGA
1678963 AGTA
1 AGTA
1678967 TCTCTGAACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 3 0.07
44 38 0.93
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAGGTCGA
Found at i:1684691 original size:27 final size:27
Alignment explanation
Indices: 1684643--1684801 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
1684633 GCAAGGCTGC
* *
1684643 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
1684670 CAGATATTATGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
1684696 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
1684723 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
1684750 CAGATATATGTGGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
1684777 CAGAAAATTGTGGCATAGCCACCAG
1 CAG-ATATTGTGGCAGAGCCACCAG
1684802 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 98 0.86
28 6 0.05
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:1684737 original size:54 final size:54
Alignment explanation
Indices: 1684643--1684801 Score: 223
Period size: 54 Copynumber: 3.0 Consensus size: 54
1684633 GCAAGGCTGC
* * * * *
1684643 CAGATAT-TGTGACGAAGTCACCAGATACAGAT-ATTATGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* *
1684696 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
*
1684750 CAGATATATGTGGCAAAGCCACCAGATCAGAAAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1684802 GACGCTTCCT
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 12 0.13
54 82 0.87
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:1686455 original size:26 final size:26
Alignment explanation
Indices: 1686424--1686531 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
1686414 TGAAATGCCC
*
1686424 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
1686450 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
1686476 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
1686502 ACCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
1686528 ATCA
1 ATCA
1686532 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:1688942 original size:5 final size:5
Alignment explanation
Indices: 1688932--1688965 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
1688922 AACTATGTGT
*
1688932 AAATA AAATA AAATA AAATG AAATA AAGATA AAA
1 AAATA AAATA AAATA AAATA AAATA AA-ATA AAA
1688966 AATAAAGAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:1700760 original size:39 final size:39
Alignment explanation
Indices: 1700725--1700837 Score: 156
Period size: 39 Copynumber: 2.9 Consensus size: 39
1700715 TGAAGCAAAT
* *
1700725 AAGTGCTGAACGAAAGCCCGAAGGCTAATTAAAGCACAC
1 AAGTGCTAAACGAAAGCCCGAAGGCTAACTAAAGCACAC
* * *
1700764 AAGTGCTAAACGGAAGTCCGAAGGCTAACTGAAGCACAC
1 AAGTGCTAAACGAAAGCCCGAAGGCTAACTAAAGCACAC
*
1700803 AAGTGCTAAAC-AGAAGCCCGAAGGCTAACTGAAGC
1 AAGTGCTAAACGA-AAGCCCGAAGGCTAACTAAAGC
1700838 TCATCAGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.40, C:0.23, G:0.25, T:0.12
Consensus pattern (39 bp):
AAGTGCTAAACGAAAGCCCGAAGGCTAACTAAAGCACAC
Found at i:1700917 original size:21 final size:19
Alignment explanation
Indices: 1700875--1700918 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
1700865 AGGGTTAACT
* *
1700875 GAAACTCATATGAGTTAAC
1 GAAACTCATAAGAGTAAAC
1700894 GAAAGCTCATAAGAGCTAAAC
1 GAAA-CTCATAAGAG-TAAAC
1700915 GAAA
1 GAAA
1700919 AGCAAACACG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 9 0.43
21 8 0.38
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (19 bp):
GAAACTCATAAGAGTAAAC
Found at i:1706543 original size:37 final size:37
Alignment explanation
Indices: 1706493--1706577 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
1706483 ATCAGTGACA
1706493 AGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATC
1 AGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATC
* *
1706530 AGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
1 AGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATC
*
1706567 AGTGACAAGTG
1 AGTGATAAGTG
1706578 ATAAATGTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (37 bp):
AGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATC
Found at i:1707805 original size:21 final size:21
Alignment explanation
Indices: 1707781--1707820 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1707771 TGAAATTCCA
*
1707781 AAAGATAAATACAAATAAAAT
1 AAAGATAAATAAAAATAAAAT
*
1707802 AAAGATAATTAAAAATAAA
1 AAAGATAAATAAAAATAAA
1707821 TGAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAGATAAATAAAAATAAAAT
Found at i:1708386 original size:28 final size:28
Alignment explanation
Indices: 1708257--1708387 Score: 133
Period size: 28 Copynumber: 4.8 Consensus size: 28
1708247 CGCATACTCG
* * * **
1708257 ATGTCTCGGACATTAAGTGCCACCATCA
1 ATGTCTCGCACACTAAGTGTCATAATCA
1708285 ATGTCTCGCACA--AAGTG-CGATAATCA
1 ATGTCTCGCACACTAAGTGTC-ATAATCA
* * *
1708311 ATGTCTCACATACTAAGTGCCATAATCA
1 ATGTCTCGCACACTAAGTGTCATAATCA
* *
1708339 AAGTCTCGCACACTAAGTGTCATAAACA
1 ATGTCTCGCACACTAAGTGTCATAATCA
*
1708367 ATGTCTCGCACGCTAAGTGTC
1 ATGTCTCGCACACTAAGTGTC
1708388 GTACATAGCC
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
25 1 0.01
26 20 0.23
28 65 0.75
29 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (28 bp):
ATGTCTCGCACACTAAGTGTCATAATCA
Found at i:1708879 original size:42 final size:42
Alignment explanation
Indices: 1708820--1708904 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
1708810 TCCCTAGCAG
1708820 CCCAAAACTTTCATTTATTTCACATTTCAACCCCTGAATTTA
1 CCCAAAACTTTCATTTATTTCACATTTCAACCCCTGAATTTA
1708862 CCCAAAACTTTCATTTATTTCACATTTCAACCCCTGAATTTA
1 CCCAAAACTTTCATTTATTTCACATTTCAACCCCTGAATTTA
1708904 C
1 C
1708905 ATTTTTCATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.31, C:0.29, G:0.02, T:0.38
Consensus pattern (42 bp):
CCCAAAACTTTCATTTATTTCACATTTCAACCCCTGAATTTA
Found at i:1714322 original size:27 final size:27
Alignment explanation
Indices: 1714280--1714420 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
1714270 AGGAAGCGTC
*
1714280 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
1714307 CTGATGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
1714333 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
1714361 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
1714388 CTGGTGGCTCTACCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
1714415 CTGGTG
1 CTGGTG
1714421 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 84 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:1714418 original size:54 final size:54
Alignment explanation
Indices: 1714277--1714420 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
1714267 TAGAGGAAGC
*
1714277 GTCCTGGTGGCTATGCCACAATTATCTGATCTGATGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1714331 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
1714385 GTTCTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
1714421 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:1714431 original size:27 final size:26
Alignment explanation
Indices: 1714293--1714435 Score: 98
Period size: 27 Copynumber: 5.3 Consensus size: 26
1714283 GTGGCTATGC
* *
1714293 CACAATTATCTG-ATCTGATGGCTCTGC
1 CACAA-TATCTGTATCTGGTGGCTC-GT
* * *
1714320 CACATATATCTGT-CCTGGTGGCTATGC
1 CACA-ATATCTGTATCTGGTGGCT-CGT
*
1714347 CACAATTATCTG-ATCTGGTGGCTCTGC
1 CACAA-TATCTGTATCTGGTGGCTC-GT
1714374 CACATATATCTGT-TCTGGTGGCTC-T
1 CACA-ATATCTGTATCTGGTGGCTCGT
*
1714399 ACCACAATATCTGTATCTGGTGACTTCGT
1 --CACAATATCTGTATCTGGTGGC-TCGT
1714428 CACAATAT
1 CACAATAT
1714436 TTGGCAGCCT
Statistics
Matches: 96, Mismatches: 7, Indels: 26
0.74 0.05 0.20
Matches are distributed among these distances:
26 9 0.09
27 82 0.85
28 4 0.04
29 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (26 bp):
CACAATATCTGTATCTGGTGGCTCGT
Found at i:1716302 original size:62 final size:63
Alignment explanation
Indices: 1716201--1716327 Score: 222
Period size: 62 Copynumber: 2.0 Consensus size: 63
1716191 TTCCCTGGAG
*
1716201 ATCTGATGGAGTTACCGTTCGAAGAGTTTGATCTTATTTTGGGAATGGA-TGGCTTGTTAAGC
1 ATCTGATGGAGTTACCGTTCGAAGAGTTTGATCTCATTTTGGGAATGGACTGGCTTGTTAAGC
1716263 ATCTGATGGAGTTACCGTTC-AGAGAGTTTGATCTCATTTTGGGAATGGACTGGCTTGTTAAGC
1 ATCTGATGGAGTTACCGTTCGA-AGAGTTTGATCTCATTTTGGGAATGGACTGGCTTGTTAAGC
1716326 AT
1 AT
1716328 AAGGCGACCC
Statistics
Matches: 62, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
61 1 0.02
62 46 0.74
63 15 0.24
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.36
Consensus pattern (63 bp):
ATCTGATGGAGTTACCGTTCGAAGAGTTTGATCTCATTTTGGGAATGGACTGGCTTGTTAAGC
Found at i:1721565 original size:54 final size:54
Alignment explanation
Indices: 1721425--1721568 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
1721415 TGGAGGAAGC
* *
1721425 GTCCTGGTGGCTATACCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
1721479 GTCCTGGGGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
1721533 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
1721569 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.07
54 77 0.93
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:1721579 original size:27 final size:27
Alignment explanation
Indices: 1721428--1721586 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
1721418 AGGAAGCGTC
* *
1721428 CTGGTGGCTATACCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
1721455 CTAGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
1721482 CTGGGGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
1721509 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
1721536 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
1721563 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
1721587 GCAGCCTCGC
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.09
27 100 0.89
28 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:1721580 original size:81 final size:80
Alignment explanation
Indices: 1721428--1721586 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 80
1721418 AGGAAGCGTC
*
1721428 CTGGTGGCTATACCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGGGGCTAT
1 CTGGTGGCTATACCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGGGACTAT
1721493 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * * * *
1721509 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATACCACAAT-TATCTGATCTAGTGGCTCTGCCACATATATCTGT-CCTGGGGACT
*
1721572 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
1721587 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.33
Consensus pattern (80 bp):
CTGGTGGCTATACCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGGGACTAT
GCCACAATATCTGAT
Found at i:1723151 original size:46 final size:46
Alignment explanation
Indices: 1723091--1723356 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
1723081 TTTGACGTGA
* * * * * *
1723091 TGCCATAGTGTCTTTTAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
1723137 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1723183 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
1723229 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCCGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1723275 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1723313 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1723357 AGAGCACACT
Statistics
Matches: 196, Mismatches: 15, Indels: 18
0.86 0.07 0.08
Matches are distributed among these distances:
38 32 0.16
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 150 0.77
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:1723323 original size:38 final size:38
Alignment explanation
Indices: 1723272--1723345 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
1723262 TTTCATATCC
1723272 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
1 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
1723310 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1723346 TTTCATATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (38 bp):
GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
Found at i:1728183 original size:23 final size:25
Alignment explanation
Indices: 1728157--1728203 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
1728147 TATCATTCAT
*
1728157 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
1728180 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
1728204 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:1728525 original size:46 final size:46
Alignment explanation
Indices: 1728464--1728774 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
1728454 TTTGACGTGA
* * * * *
1728464 TGCCAT-GTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
**** * *
1728509 TGCCATGGTATCTTTCAACCATGGTCTTATTTTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
1728555 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
1728601 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
1728647 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCCGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1728693 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1728731 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1728775 AGAGCACACT
Statistics
Matches: 238, Mismatches: 18, Indels: 19
0.87 0.07 0.07
Matches are distributed among these distances:
38 32 0.13
39 1 0.00
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 11 0.05
46 186 0.78
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:1728741 original size:38 final size:38
Alignment explanation
Indices: 1728690--1728763 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
1728680 TTTCATATCC
1728690 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
1 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
1728728 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1728764 TTTCATATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (38 bp):
GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
Found at i:1733114 original size:25 final size:25
Alignment explanation
Indices: 1733080--1733131 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
1733070 ATTTTACATC
1733080 ACTTGAAAGATTTAAAGAAATAATT
1 ACTTGAAAGATTTAAAGAAATAATT
1733105 ACTTGAAAGATTTAAAGAAATAATT
1 ACTTGAAAGATTTAAAGAAATAATT
1733130 AC
1 AC
1733132 ACAAGTGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.31
Consensus pattern (25 bp):
ACTTGAAAGATTTAAAGAAATAATT
Found at i:1742701 original size:22 final size:23
Alignment explanation
Indices: 1742676--1742718 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
1742666 ACTTAAATTT
1742676 TTAAATT-TAAAAAATAAAAAAA
1 TTAAATTCTAAAAAATAAAAAAA
*
1742698 TTAAATTCTTAAAAATAAAAA
1 TTAAATTCTAAAAAATAAAAA
1742719 TATAAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
TTAAATTCTAAAAAATAAAAAAA
Done.