Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 40 of 344
Found at i:13383128 original size:3 final size:3
Alignment explanation
Indices: 13383120--13383191 Score: 78
Period size: 3 Copynumber: 24.7 Consensus size: 3
13383110 ACAACTTTTT
* *
13383120 TAC TAC TAC TAT TA- TAC TAC TAC TA- TAC TAC TAC TAC TAC TAT TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
* *
13383166 CAC TA- TCAC TAC CAC TAC TAC TAC TA
1 TAC TAC T-AC TAC TAC TAC TAC TAC TA
13383192 TTGGTAAGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
2 5 0.09
3 52 0.90
4 1 0.02
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
TAC
Found at i:13383139 original size:11 final size:11
Alignment explanation
Indices: 13383123--13383164 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
13383113 ACTTTTTTAC
13383123 TACTACTATTA
1 TACTACTATTA
*
13383134 TACTACTACTA
1 TACTACTATTA
*
13383145 TACTACTA--C
1 TACTACTATTA
13383154 TACTACTATTA
1 TACTACTATTA
13383165 CCACTATCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 8 0.31
11 18 0.69
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (11 bp):
TACTACTATTA
Found at i:13383142 original size:17 final size:17
Alignment explanation
Indices: 13383120--13383164 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 17
13383110 ACAACTTTTT
13383120 TACTACTACTATTATAC
1 TACTACTACTATTATAC
*
13383137 TACTACTA-TA--CTAC
1 TACTACTACTATTATAC
13383151 TACTACTACTATTA
1 TACTACTACTATTA
13383165 CCACTATCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 11 0.48
15 2 0.09
16 2 0.09
17 8 0.35
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (17 bp):
TACTACTACTATTATAC
Found at i:13388198 original size:19 final size:19
Alignment explanation
Indices: 13388156--13388201 Score: 78
Period size: 18 Copynumber: 2.5 Consensus size: 19
13388146 ATAATATTAA
13388156 TTAA-TAAAATATTTTTAC
1 TTAATTAAAATATTTTTAC
13388174 TT-ATTAAAATATTTTTAC
1 TTAATTAAAATATTTTTAC
13388192 TTAATTAAAA
1 TTAATTAAAA
13388202 ATCATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 1 0.04
18 18 0.69
19 7 0.27
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAATTAAAATATTTTTAC
Found at i:13395038 original size:12 final size:12
Alignment explanation
Indices: 13395021--13395045 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13395011 TACTTTTATT
13395021 TTTTTAATTTTA
1 TTTTTAATTTTA
13395033 TTTTTAATTTTA
1 TTTTTAATTTTA
13395045 T
1 T
13395046 ATTATGAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTAATTTTA
Found at i:13395449 original size:15 final size:15
Alignment explanation
Indices: 13395419--13395447 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
13395409 ATTATTAGTA
13395419 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
13395434 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
13395448 TACCATACGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:13395880 original size:27 final size:26
Alignment explanation
Indices: 13395836--13395891 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
13395826 AAATTTTTTA
*
13395836 AAAAAATTGGTCTATTTTTATAATATTT
1 AAAAAATTGGCCTATTTTTA-AA-ATTT
*
13395864 AAAAAA-TGGCCTTTTTTTAAAATTT
1 AAAAAATTGGCCTATTTTTAAAATTT
13395889 AAA
1 AAA
13395892 CACGGGCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.27
26 2 0.08
27 11 0.42
28 6 0.23
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (26 bp):
AAAAAATTGGCCTATTTTTAAAATTT
Found at i:13395888 original size:25 final size:28
Alignment explanation
Indices: 13395836--13395891 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 28
13395826 AAATTTTTTA
* *
13395836 AAAAAATTGGTCTATTTTTATAATATTT
1 AAAAAATTGGCCTATTTTTATAAAATTT
13395864 AAAAAA-TGGCCT-TTTTT-TAAAATTT
1 AAAAAATTGGCCTATTTTTATAAAATTT
13395889 AAA
1 AAA
13395892 CACGGGCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 10 0.38
26 5 0.19
27 5 0.19
28 6 0.23
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (28 bp):
AAAAAATTGGCCTATTTTTATAAAATTT
Found at i:13397254 original size:29 final size:29
Alignment explanation
Indices: 13397211--13397266 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
13397201 TGAGAACTCA
13397211 ATGTCTTTGAACCAAATCCAAACCAATTG
1 ATGTCTTTGAACCAAATCCAAACCAATTG
*
13397240 ATGTCTTTGATCCAAATCCAAACCAAT
1 ATGTCTTTGAACCAAATCCAAACCAAT
13397267 CTCTAGGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.29
Consensus pattern (29 bp):
ATGTCTTTGAACCAAATCCAAACCAATTG
Found at i:13403027 original size:16 final size:16
Alignment explanation
Indices: 13403006--13403049 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
13402996 TATGAAATTT
13403006 TAATATTTTATTAAAA
1 TAATATTTTATTAAAA
*
13403022 TAATATTTTAATTAAGA
1 TAATATTTT-ATTAAAA
*
13403039 TCAT-TTTTATT
1 TAATATTTTATT
13403050 TAACAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 13 0.52
17 9 0.36
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (16 bp):
TAATATTTTATTAAAA
Found at i:13407027 original size:3 final size:3
Alignment explanation
Indices: 13407019--13407082 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
13407009 GTATATTAAA
13407019 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
13407067 TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT T
13407083 ATTATTATTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TGT
Found at i:13407532 original size:11 final size:12
Alignment explanation
Indices: 13407502--13407535 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
13407492 GTATATTTAC
13407502 TTATTATATAAG
1 TTATTATATAAG
13407514 TATATTAT-TAAG
1 T-TATTATATAAG
13407526 TTATTATATA
1 TTATTATATA
13407536 TATAAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:13408507 original size:18 final size:19
Alignment explanation
Indices: 13408486--13408526 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
13408476 AATGAAATGA
13408486 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
13408504 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
13408523 GAAA
1 GAAA
13408527 CATGAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:13429280 original size:15 final size:16
Alignment explanation
Indices: 13429254--13429283 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13429244 TTTGCCCGGG
13429254 CTAAAAAGCCCAACAT
1 CTAAAAAGCCCAACAT
13429270 CTAAAAA-CCCAACA
1 CTAAAAAGCCCAACA
13429284 GCCCAAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.33, G:0.03, T:0.10
Consensus pattern (16 bp):
CTAAAAAGCCCAACAT
Found at i:13429390 original size:13 final size:13
Alignment explanation
Indices: 13429372--13429453 Score: 74
Period size: 13 Copynumber: 6.9 Consensus size: 13
13429362 TCTTCACTCC
13429372 AACCACTCCACTA
1 AACCACTCCACTA
13429385 AACCAC-CCTACTA
1 AACCACTCC-ACTA
13429398 AACCAC-CC-C--
1 AACCACTCCACTA
*
13429407 AACCACCCCACTA
1 AACCACTCCACTA
*
13429420 AACCACCCCACTA
1 AACCACTCCACTA
13429433 AACCA-TCC-C--
1 AACCACTCCACTA
13429442 AACCACTCCACT
1 AACCACTCCACT
13429454 TGCCTACAAA
Statistics
Matches: 60, Mismatches: 1, Indels: 17
0.77 0.01 0.22
Matches are distributed among these distances:
9 11 0.18
10 5 0.08
11 4 0.07
12 4 0.07
13 36 0.60
ACGTcount: A:0.37, C:0.52, G:0.00, T:0.11
Consensus pattern (13 bp):
AACCACTCCACTA
Found at i:13429410 original size:22 final size:22
Alignment explanation
Indices: 13429385--13429429 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
13429375 CACTCCACTA
*
13429385 AACCACCCTACTAAACCACCCC
1 AACCACCCCACTAAACCACCCC
13429407 AACCACCCCACTAAACCACCCC
1 AACCACCCCACTAAACCACCCC
13429429 A
1 A
13429430 CTAAACCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.56, G:0.00, T:0.07
Consensus pattern (22 bp):
AACCACCCCACTAAACCACCCC
Found at i:13429418 original size:35 final size:35
Alignment explanation
Indices: 13429370--13429453 Score: 141
Period size: 35 Copynumber: 2.4 Consensus size: 35
13429360 TATCTTCACT
*
13429370 CCAACCACTCCACTAAACCACCCTACTAAACCACC
1 CCAACCACTCCACTAAACCACCCCACTAAACCACC
* *
13429405 CCAACCACCCCACTAAACCACCCCACTAAACCATC
1 CCAACCACTCCACTAAACCACCCCACTAAACCACC
13429440 CCAACCACTCCACT
1 CCAACCACTCCACT
13429454 TGCCTACAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.36, C:0.54, G:0.00, T:0.11
Consensus pattern (35 bp):
CCAACCACTCCACTAAACCACCCCACTAAACCACC
Found at i:13429952 original size:23 final size:23
Alignment explanation
Indices: 13429868--13429952 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
13429858 CTAATACCAC
* *
13429868 TATTATCATCATTATTACTATTA-
1 TATTATTAT-ATTTTTACTATTAT
* * *
13429891 TATTATAATACATTTTCATTATTAT
1 TATTAT--TATATTTTTACTATTAT
* * *
13429916 TACTATTGTGTTTTTACTATTAT
1 TATTATTATATTTTTACTATTAT
13429939 TATTATTATATTTT
1 TATTATTATATTTT
13429953 CTTTTTTGTA
Statistics
Matches: 45, Mismatches: 14, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
23 29 0.64
24 10 0.22
25 6 0.13
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATTATATTTTTACTATTAT
Found at i:13437549 original size:21 final size:19
Alignment explanation
Indices: 13437525--13437563 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
13437515 TAAGCACAAA
*
13437525 AAGCAGAGATGGAGAGGCGCC
1 AAGC-GAGAAGGA-AGGCGCC
13437546 AAGCGAGAAGGAAGGCGC
1 AAGCGAGAAGGAAGGCGC
13437564 GTTTAACGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.36, C:0.18, G:0.44, T:0.03
Consensus pattern (19 bp):
AAGCGAGAAGGAAGGCGCC
Found at i:13443176 original size:16 final size:17
Alignment explanation
Indices: 13443144--13443176 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13443134 TTTATAAGTA
*
13443144 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
13443161 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
13443177 GTTTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:13443629 original size:92 final size:92
Alignment explanation
Indices: 13443472--13443682 Score: 332
Period size: 92 Copynumber: 2.3 Consensus size: 92
13443462 TGCCATAGTG
* * *
13443472 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
* *
13443537 TTCTTTTCATGTCACGCTCCCACGGTA
66 TTCGTTTCATATCACGCTCCCACGGTA
*
13443564 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
* * *
13443629 TTCGTTTCATATCACGTTGCCATGGTA
66 TTCGTTTCATATCACGCTCCCACGGTA
*
13443656 TCTTTCAACCATGGTCTTACACATTTC
1 TCTTTCAACCATGGTCTTACTCATTTC
13443683 ATATCAGAGA
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 108 1.00
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.42
Consensus pattern (92 bp):
TCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
TTCGTTTCATATCACGCTCCCACGGTA
Found at i:13443688 original size:46 final size:46
Alignment explanation
Indices: 13443462--13443684 Score: 286
Period size: 46 Copynumber: 4.8 Consensus size: 46
13443452 TTTGACATGA
* * * * *
13443462 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGT
* *
13443508 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* * ** *
13443554 TCCCACGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* *
13443600 TGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
**
13443646 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
13443685 ATCAGAGAGC
Statistics
Matches: 152, Mismatches: 24, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
45 4 0.03
46 148 0.97
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
Found at i:13448135 original size:38 final size:38
Alignment explanation
Indices: 13448093--13448172 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
13448083 GATAAATCCC
*
13448093 GCAGGCCTAGTGCTGGTATAT-ATCGGGCCTCGTGCCTA
1 GCAGGCCTAGTGCCGGTATATGATCGGGCCT-GTGCCTA
* * * *
13448131 GCAGGCTTAGTGCCGGTATGTGTTCGGGCCTTTGCCTA
1 GCAGGCCTAGTGCCGGTATATGATCGGGCCTGTGCCTA
13448169 GCAG
1 GCAG
13448173 CTTCGCCGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
38 28 0.78
39 8 0.22
ACGTcount: A:0.14, C:0.25, G:0.34, T:0.28
Consensus pattern (38 bp):
GCAGGCCTAGTGCCGGTATATGATCGGGCCTGTGCCTA
Found at i:13458982 original size:5 final size:5
Alignment explanation
Indices: 13458968--13458996 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
13458958 ACATAAGTGC
13458968 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
13458997 ATTGTTTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:13471113 original size:44 final size:46
Alignment explanation
Indices: 13470999--13471113 Score: 137
Period size: 46 Copynumber: 2.5 Consensus size: 46
13470989 ATACAGGTCT
* * *
13470999 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAATGTCAGATCC
* *
13471045 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGT-A-ATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAAT-GTCAGATCC
* *
13471089 TATCTCCTTGAGATTACAATGGAGC
1 TATCTCCCTGAGATTACAGTGGAGC
13471114 GGATTATAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 25 0.42
45 3 0.05
46 32 0.53
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAATGTCAGATCC
Found at i:13471172 original size:41 final size:41
Alignment explanation
Indices: 13471125--13471500 Score: 216
Period size: 41 Copynumber: 8.7 Consensus size: 41
13471115 GATTATAGGA
* *
13471125 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
1 TCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAATCAGG
* * *
13471166 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGA
1 TCTTATCTCTCTGAAGTTACAGTGGAGTAGATC---GAA-T-CAGG
* * * * **
13471212 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAT-ATAA
1 TCTTATCTCTCTGAAGTTACAGTGGAGTAGATCG-A-ATCA-GG
* * ** ** *
13471255 TCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAAATAAAGG
1 TCTTATCTCTCTGAAGTTACAGTGGAGTAGA-T-CGAAT-CAGG
* *
13471299 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAATCAGG
* * *
13471341 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGA
1 TCTTATCTCTCTGAAGTTACAGTGGAGTAGATC---GAA-T-CAGG
* * ** ** *
13471387 TCTTATCCCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAGG
1 TCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAATC--AGG
* * * *
13471430 ATCTTATCTCTCTGAAATTATAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAATCAGG
* **
13471472 AT-TTATCTCCCTGTGGTTACAGTGGAGTA
1 -TCTTATCTCTCTGAAGTTACAGTGGAGTA
13471501 CATTGAAGCC
Statistics
Matches: 255, Mismatches: 59, Indels: 42
0.72 0.17 0.12
Matches are distributed among these distances:
41 82 0.32
42 9 0.04
43 37 0.15
44 36 0.14
45 30 0.12
46 61 0.24
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (41 bp):
TCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAATCAGG
Found at i:13471216 original size:46 final size:45
Alignment explanation
Indices: 13471123--13471413 Score: 246
Period size: 46 Copynumber: 6.6 Consensus size: 45
13471113 CGGATTATAG
* *
13471123 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA-TCA
1 GATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAAGAATTCA
* * *
13471164 GGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
1 GATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAAGAATT-CA
* * * *
13471210 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAG-ATAT-A
1 GATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAAGAAT-TCA
* * ** * * **
13471254 -ATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT-TAAAAATAAA
1 GATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAAGAATTCA
* *
13471297 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA-TCA
1 -GATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAAGAATTCA
* * *
13471339 GGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
1 GATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAAGAATT-CA
* *
13471385 GATCTTATCCCCCTGAAGTTACAGTGGAG
1 GATCTTATCTCTCTGAAGTTACAGTGGAG
13471414 CGGATTAAAA
Statistics
Matches: 199, Mismatches: 35, Indels: 27
0.76 0.13 0.10
Matches are distributed among these distances:
41 62 0.31
42 3 0.02
43 33 0.17
44 5 0.03
45 32 0.16
46 64 0.32
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (45 bp):
GATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGAAGAATTCA
Found at i:13471348 original size:175 final size:170
Alignment explanation
Indices: 13470992--13471414 Score: 652
Period size: 175 Copynumber: 2.5 Consensus size: 170
13470982 GTTCATAATA
* * ** * *
13470992 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
* *
13471057 ATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTATA
66 GTTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTATA
13471122 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
131 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
13471162 CAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
* *
13471227 GTTACAGCGGAGCAGATCGAAGATA-TAATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAA
66 GTTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAGA-TTACAATGGAGCGGATT--
13471290 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
128 --AT--AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* *
13471337 CAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCCCCCTGAA
1 CAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
*
13471402 GTTACAGTGGAGC
66 GTTACAGCGGAGC
13471415 GGATTAAAAC
Statistics
Matches: 233, Mismatches: 13, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
168 1 0.00
169 32 0.14
170 82 0.35
173 2 0.01
175 116 0.50
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (170 bp):
CAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
GTTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTATA
GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
Found at i:13471461 original size:131 final size:130
Alignment explanation
Indices: 13471210--13471500 Score: 428
Period size: 131 Copynumber: 2.2 Consensus size: 130
13471200 AAGAATTGCA
* * * *
13471210 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGATATAATCCTATCCCCCTGAAGTTAC
* *
13471275 AGTGGAGCGGATTAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 AGTGGAGCGGATTAAAAACAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAG
* *
13471340 G-TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTGCAGATCTTATCCCCCTGAAG
1 GATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGATA-T--A-ATCCTATCCCCCTGAAG
*
13471403 TTACAGTGGAGCGGATT-AAAACAAAGGATCTTATCTCTCTGAAATTATAGTAGAGTAGATCGCA
62 TTACAGTGGAGCGGATTAAAAACAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCA
13471467 TCAG
127 TCAG
*
13471471 GAT-TTATCTCCCTGTGGTTACAGTGGAGTA
1 GATCTTATCTCCCTGAGGTTACAGTGGAGTA
13471501 CATTGAAGCC
Statistics
Matches: 145, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
128 1 0.01
129 35 0.24
130 1 0.01
131 75 0.52
132 33 0.23
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (130 bp):
GATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGATATAATCCTATCCCCCTGAAGTTAC
AGTGGAGCGGATTAAAAACAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAG
Found at i:13473602 original size:5 final size:5
Alignment explanation
Indices: 13473588--13473616 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
13473578 ACATAAGTGC
13473588 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
13473617 ATTGTTTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:13479608 original size:6 final size:6
Alignment explanation
Indices: 13479597--13479630 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
13479587 ATGATCATTT
13479597 CAATTC CAATTC CAATTC CAATTC CAATTC CAAT
1 CAATTC CAATTC CAATTC CAATTC CAATTC CAAT
13479631 AATTTGGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (6 bp):
CAATTC
Found at i:13479769 original size:5 final size:5
Alignment explanation
Indices: 13479761--13479793 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
13479751 AGTAGTTCCA
*
13479761 ACTCA ACTCC ACTCC ACTCC ACTCC ACTCC ACT
1 ACTCC ACTCC ACTCC ACTCC ACTCC ACTCC ACT
13479794 ACTCAAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.24, C:0.55, G:0.00, T:0.21
Consensus pattern (5 bp):
ACTCC
Found at i:13483713 original size:23 final size:24
Alignment explanation
Indices: 13483687--13483744 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
13483677 AAATAAATAT
*
13483687 TATGATATGAATT-TATTTTGTA-A
1 TATGATAT-AATTATATTTAGTACA
*
13483710 TATGACATAATTATATTTAGTACA
1 TATGATATAATTATATTTAGTACA
*
13483734 TATTATATAAT
1 TATGATATAAT
13483745 ATAAAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 4 0.14
23 15 0.52
24 10 0.34
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.48
Consensus pattern (24 bp):
TATGATATAATTATATTTAGTACA
Found at i:13484846 original size:19 final size:20
Alignment explanation
Indices: 13484822--13484860 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
13484812 TCTTATTTTT
13484822 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
13484841 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
13484861 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:13484878 original size:25 final size:23
Alignment explanation
Indices: 13484822--13484886 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
13484812 TCTTATTTTT
*
13484822 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
13484841 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
13484864 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
13484887 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:13486747 original size:31 final size:29
Alignment explanation
Indices: 13486704--13486814 Score: 91
Period size: 31 Copynumber: 3.7 Consensus size: 29
13486694 ATCTCAAAAT
* *
13486704 TATATATGAACTTTGATTTAGTGTGCAATTG
1 TATACATGAACTTTAATTT-G-GTGCAATTG
13486735 TATACATGAACTTTAATTTGGTGCAA-T-
1 TATACATGAACTTTAATTTGGTGCAATTG
* * *
13486762 TATACATCTGAAACTCTAATTGTGGTTCAAATG
1 TATACA--TG-AACTTTAATT-TGGTGCAATTG
*
13486795 TATACTTGAAACTTTAATTT
1 TATACATG-AACTTTAATTT
13486815 TGATTTAATC
Statistics
Matches: 68, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
27 6 0.09
28 1 0.01
29 8 0.12
30 11 0.16
31 36 0.53
32 1 0.01
33 5 0.07
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.42
Consensus pattern (29 bp):
TATACATGAACTTTAATTTGGTGCAATTG
Found at i:13495345 original size:2 final size:2
Alignment explanation
Indices: 13495338--13495364 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13495328 AGTTATCTTT
13495338 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
13495365 GAGGTTACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13497005 original size:23 final size:23
Alignment explanation
Indices: 13496962--13497006 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13496952 ATGATAGGGG
* *
13496962 TTTTAATTAATTTAGTTAATTAA
1 TTTTAATTAATTCACTTAATTAA
13496985 TTTTAATTAA-TCACTTGAATTA
1 TTTTAATTAATTCACTT-AATTA
13497007 TTTGGTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (23 bp):
TTTTAATTAATTCACTTAATTAA
Found at i:13498364 original size:12 final size:12
Alignment explanation
Indices: 13498336--13498371 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
13498326 TTGATCTATT
*
13498336 ATTTATGTTTAGA
1 ATTTATGATT-GA
13498349 ATTTATGATTGA
1 ATTTATGATTGA
13498361 ATTTATGATTG
1 ATTTATGATTG
13498372 TTTGCATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 13 0.59
13 9 0.41
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.53
Consensus pattern (12 bp):
ATTTATGATTGA
Found at i:13522605 original size:43 final size:42
Alignment explanation
Indices: 13522543--13522706 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
13522533 TACCATACCA
** *
13522543 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCACATCG
* * * *
13522585 ATGCCAATAGCCCAGCTATGGTCTTATATGAAATCTCACATTG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCACATCG
* * * *
13522628 ATGACATATCCCAGATATGGTCTTACACGAAGTCTCACATCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCACATCG
* * *
13522670 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
13522707 ACTAACTCTA
Statistics
Matches: 102, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 68 0.67
43 34 0.33
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCACATCG
Found at i:13526335 original size:24 final size:24
Alignment explanation
Indices: 13526307--13526358 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
13526297 TTTGTAGGTC
13526307 AAATAAATTATACTAATAAATACA
1 AAATAAATTATACTAATAAATACA
* * * *
13526331 AAATATATTATATTAATAGATACT
1 AAATAAATTATACTAATAAATACA
13526355 AAAT
1 AAAT
13526359 CTTTTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACA
Found at i:13526628 original size:24 final size:24
Alignment explanation
Indices: 13526577--13526622 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
13526567 TTCATAGGTC
*
13526577 AAATAAATTATGCTAATAAATATG
1 AAATAAATTATACTAATAAATATG
*
13526601 AAATATATTATACTAATAAATA
1 AAATAAATTATACTAATAAATA
13526623 CTAAATCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATATG
Found at i:13526796 original size:270 final size:271
Alignment explanation
Indices: 13526282--13526828 Score: 848
Period size: 270 Copynumber: 2.0 Consensus size: 271
13526272 TAAAAGTGTT
** *
13526282 TATTTATAGACTAAATTTGTAGGTCAAATAAATTATACTAATAAATACAAAATATATTATATTAA
1 TATTTATAGACTAAATTCATAGGTCAAATAAATTATACTAATAAATACAAAATATATTATACTAA
* * **
13526347 TAGATACTAAATCTTTTAGAAAGAAAATATATTTTGTTTAACTTGACTTGCAAGTAATCTCTTAT
66 TAAATACTAAATCTTCTAGAAAGAAAATATATTTTGTTTAACTTGACTTGCAAACAATCTCTTAT
* *
13526412 TTTATTTAATAAGAATTTGGGTCACACATATATTTATTAATTTATAATTAAAATTAATTTTAAAA
131 TTTATTTAACAAGAATTTAGGTCACACATATATTTATTAATTTATAATTAAAATTAATTTTAAAA
** *
13526477 AATATTTTTAATCTAATAGGTACATTAACTAGAAAAATATTA-CATATATATATTCTTATTATAA
196 AATATTTTTAATCTAATAAATACATTAACTAGAAAAATATTATAATATATATATTCTTATTATAA
13526541 TGGGTCTCACA
261 TGGGTCTCACA
* * **
13526552 TATTTATAGATTAAATTCATAGGTCAAATAAATTATGCTAATAAATATGAAATATATTATACTAA
1 TATTTATAGACTAAATTCATAGGTCAAATAAATTATACTAATAAATACAAAATATATTATACTAA
*
13526617 TAAATACTAAATCTTCTAGAAAGAAAATATATATTT-TTTAACTTGACTTGCAAACAATGTCTTA
66 TAAATACTAAATCTTCTAGAAAGAAAATATAT-TTTGTTTAACTTGACTTGCAAACAATCTCTTA
* *
13526681 TTTTATTTGACAAGAATTTAGGTCACACATATATTTATTAATTTATAATTAAAATTAATTTTTTT
130 TTTTATTTAACAAGAATTTAGGTCACACATATATTTATTAATTTATAATTAAAATTAA--TTTTA
* *
13526746 AAAAATATTTTTAATCTAATAAATTCATTAACTAGACAAATATTAT-ATATATATATTCTTATTA
193 AAAAATATTTTTAATCTAATAAATACATTAACTAGAAAAATATTATAATATATATATTCTTATTA
*
13526810 TAATGGGTTTCACA
258 TAATGGGTCTCACA
13526824 TATTT
1 TATTT
13526829 TTATTATACT
Statistics
Matches: 252, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
270 168 0.67
271 3 0.01
272 81 0.32
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (271 bp):
TATTTATAGACTAAATTCATAGGTCAAATAAATTATACTAATAAATACAAAATATATTATACTAA
TAAATACTAAATCTTCTAGAAAGAAAATATATTTTGTTTAACTTGACTTGCAAACAATCTCTTAT
TTTATTTAACAAGAATTTAGGTCACACATATATTTATTAATTTATAATTAAAATTAATTTTAAAA
AATATTTTTAATCTAATAAATACATTAACTAGAAAAATATTATAATATATATATTCTTATTATAA
TGGGTCTCACA
Found at i:13528314 original size:17 final size:17
Alignment explanation
Indices: 13528285--13528317 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13528275 TATTGGTAAG
13528285 CTTGCAGTCTTGGTGAA
1 CTTGCAGTCTTGGTGAA
13528302 CTTGCAGAT-TTGGTGA
1 CTTGCAG-TCTTGGTGA
13528318 GTTCAAAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.18, C:0.15, G:0.30, T:0.36
Consensus pattern (17 bp):
CTTGCAGTCTTGGTGAA
Found at i:13530747 original size:56 final size:56
Alignment explanation
Indices: 13530675--13530821 Score: 231
Period size: 56 Copynumber: 2.6 Consensus size: 56
13530665 GTCTCATCAG
** *
13530675 GGTCTTACTCATACACATATATCGGAATCACATATAAATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATAAATGCCAACGTATTAAACGT
* **
13530731 GGTCTTACTCGCACACATATATCGGAATCACATGTCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATAAATGCCAACGTATTAAACGT
*
13530787 GGTCTTACTCGCACACATATATCGAAATCACATAT
1 GGTCTTACTCGCACACATATATCGGAATCACATAT
13530822 CACAAGTCGA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 83 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATAAATGCCAACGTATTAAACGT
Found at i:13537108 original size:32 final size:32
Alignment explanation
Indices: 13537072--13537135 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
13537062 TAAGTAGAAG
13537072 TGGAGGCTTGATCATTGACATCCTCAGCCCAA
1 TGGAGGCTTGATCATTGACATCCTCAGCCCAA
13537104 TGGAGGCTTGATCATTGACATCCTCAGCCCAA
1 TGGAGGCTTGATCATTGACATCCTCAGCCCAA
13537136 CCCCCATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (32 bp):
TGGAGGCTTGATCATTGACATCCTCAGCCCAA
Found at i:13539846 original size:51 final size:50
Alignment explanation
Indices: 13539712--13539856 Score: 129
Period size: 51 Copynumber: 2.9 Consensus size: 50
13539702 AAACTCTTTT
* * *
13539712 ATTTATTACTTATCT-TTTATTAATTT-AATTAATTAGAGATAAAATAATC
1 ATTTAATA-TTATCTCTTAATTAATTTAAATTAATTAGAGATAAAATAATA
* ** * * *
13539761 ATTTAATATTATCACTTAATTACA-TTATTTTTAATTAGTGGTAATATAA-A
1 ATTTAATATTATCTCTTAATTA-ATTTA-AATTAATTAGAGATAAAATAATA
13539811 ATTTTAATATTTATCTCTTAATTAATTTAAATTAATTAGAGA-AAAA
1 A-TTTAATA-TTATCTCTTAATTAATTTAAATTAATTAGAGATAAAA
13539857 CATTTATGAC
Statistics
Matches: 74, Mismatches: 15, Indels: 13
0.73 0.15 0.13
Matches are distributed among these distances:
48 5 0.07
49 15 0.20
50 5 0.07
51 33 0.45
52 16 0.22
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.48
Consensus pattern (50 bp):
ATTTAATATTATCTCTTAATTAATTTAAATTAATTAGAGATAAAATAATA
Found at i:13545719 original size:3 final size:3
Alignment explanation
Indices: 13545711--13545767 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
13545701 ACTCAACATA
13545711 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13545759 TAT TAT TAT
1 TAT TAT TAT
13545768 AAGAAGAAGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13546797 original size:23 final size:22
Alignment explanation
Indices: 13546761--13546834 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 22
13546751 ACATGCTAAA
* *
13546761 AATAATATACATATGTATATATT
1 AATAAAATATATAT-TATATATT
*
13546784 AATAAAATATATATTACATATTT
1 AATAAAATATATATTATATA-TT
* *
13546807 AAGT-AAATATATATAATATAAT
1 AA-TAAAATATATATTATATATT
13546829 AATAAA
1 AATAAA
13546835 GTAAATATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
21 1 0.02
22 10 0.24
23 30 0.71
24 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (22 bp):
AATAAAATATATATTATATATT
Found at i:13546845 original size:22 final size:20
Alignment explanation
Indices: 13546821--13546890 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 20
13546811 AAATATATAT
13546821 AATATAATAATAAAGTAAATA
1 AATA-AATAATAAAGTAAATA
13546842 TAATAAAATAA-ATAAGTAAATGA
1 -AAT-AAATAATA-AAGTAAAT-A
13546865 AATAAATAAATAAA-TAAATA
1 AATAAAT-AATAAAGTAAATA
13546885 AATAAA
1 AATAAA
13546891 AGATTAGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
20 7 0.16
21 10 0.23
22 23 0.53
23 3 0.07
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (20 bp):
AATAAATAATAAAGTAAATA
Found at i:13546856 original size:4 final size:4
Alignment explanation
Indices: 13546810--13546890 Score: 83
Period size: 4 Copynumber: 19.0 Consensus size: 4
13546800 CATATTTAAG
* *
13546810 TAAA TATA TATAA TATAA T-AA TAAA GTAAA TATAA TAAAA TAAA TAAG
1 TAAA TAAA TA-AA TA-AA TAAA TAAA -TAAA TA-AA T-AAA TAAA TAAA
13546858 TAAA TGAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA
13546891 AGATTAGAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
3 3 0.04
4 42 0.63
5 21 0.31
6 1 0.01
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:13548171 original size:16 final size:16
Alignment explanation
Indices: 13548135--13548187 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
13548125 GTTATAAACT
* *
13548135 CATGAATTGAGTATGG
1 CATGAAATGAGTATTG
*
13548151 TATGAAATGATGTATT-
1 CATGAAATGA-GTATTG
*
13548167 CATGAATTGAGTATTG
1 CATGAAATGAGTATTG
13548183 CATGA
1 CATGA
13548188 CTGATGCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (16 bp):
CATGAAATGAGTATTG
Found at i:13551529 original size:29 final size:24
Alignment explanation
Indices: 13551473--13551522 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
13551463 TATTCTCTGT
13551473 TGCTCTTTTGTTTTGTTGCAAGTA
1 TGCTCTTTTGTTTTGTTGCAAGTA
13551497 TGCTCTTTTGTTTTGTTGCAAGTA
1 TGCTCTTTTGTTTTGTTGCAAGTA
13551521 TG
1 TG
13551523 ATATGCTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.12, C:0.12, G:0.22, T:0.54
Consensus pattern (24 bp):
TGCTCTTTTGTTTTGTTGCAAGTA
Found at i:13553936 original size:46 final size:43
Alignment explanation
Indices: 13553817--13553948 Score: 128
Period size: 42 Copynumber: 3.0 Consensus size: 43
13553807 GTACACATAG
* *
13553817 AGCATCATCGAATAAATCAAAGCAATCATATTGGCACATAAGTGC
1 AGCATCA-CGGATAAA-CTAAGCAATCATATTGGCACATAAGTGC
13553862 -GCCATCA--GATAAACTGAAGCAATCATATTGGCACA-ATAGTGC
1 AG-CATCACGGATAAACT-AAGCAATCATATTGGCACATA-AGTGC
* *
13553904 AAGCATCACCGGATAAACCTAAGCAATCATATTAGTACATAAGTG
1 -AGCATCA-CGGATAAA-CTAAGCAATCATATTGGCACATAAGTG
13553949 TATCATCAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 19
0.76 0.04 0.20
Matches are distributed among these distances:
41 2 0.03
42 29 0.40
43 5 0.07
44 2 0.03
45 5 0.07
46 27 0.37
47 3 0.04
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (43 bp):
AGCATCACGGATAAACTAAGCAATCATATTGGCACATAAGTGC
Found at i:13555523 original size:12 final size:11
Alignment explanation
Indices: 13555506--13555539 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
13555496 AAAGATAAGT
13555506 AGGGGAGAATGA
1 AGGGGAGAA-GA
13555518 AGGGGAGAAGA
1 AGGGGAGAAGA
13555529 AGAGGGAGAAG
1 AG-GGGAGAAG
13555540 GAGAGTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.44, C:0.00, G:0.53, T:0.03
Consensus pattern (11 bp):
AGGGGAGAAGA
Found at i:13561829 original size:26 final size:26
Alignment explanation
Indices: 13561793--13561900 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
13561783 TGAAATGCCC
* *
13561793 ATCATGGAACATTTACCTAAACCGTT
1 ATCATGGAACATTTACCTAACCCATT
13561819 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
13561845 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
13561871 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
13561897 ATCA
1 ATCA
13561901 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:13568927 original size:26 final size:26
Alignment explanation
Indices: 13568896--13569003 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
13568886 TGAAATGCCC
*
13568896 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
13568922 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
13568948 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
13568974 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
13569000 ATCA
1 ATCA
13569004 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:13569615 original size:40 final size:40
Alignment explanation
Indices: 13569550--13569645 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 40
13569540 ACAACTCCGA
* *
13569550 CCAACCCAACACACC--ATGTGGGGATAAAATCGACCCAT
1 CCAACCCTACACACCATATATGGGGATAAAATCGACCCAT
* * * *
13569588 CCATCCCTGCACACCATATATGGGGATATAATTGACCCAT
1 CCAACCCTACACACCATATATGGGGATAAAATCGACCCAT
13569628 CCAACCCTACACACCATA
1 CCAACCCTACACACCATA
13569646 AGGTACCGCA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 12 0.25
40 36 0.75
ACGTcount: A:0.34, C:0.35, G:0.12, T:0.18
Consensus pattern (40 bp):
CCAACCCTACACACCATATATGGGGATAAAATCGACCCAT
Found at i:13579140 original size:26 final size:26
Alignment explanation
Indices: 13579111--13579218 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
13579101 TGGTACAAAT
13579111 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
13579137 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
13579163 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
13579189 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
13579215 TGAT
1 TGAT
13579219 GGGCATTTAA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:13586147 original size:41 final size:41
Alignment explanation
Indices: 13586101--13586362 Score: 332
Period size: 41 Copynumber: 6.4 Consensus size: 41
13586091 CAGAGCAATA
* * * **
13586101 GTAAAACGCCGCTAAAAA-CGGAGCAATACCGGCATTTTTTG
1 GTAAAACGCCGCTAAAAACCAGAGCATTAGCGGC-GCTTTTG
* * *
13586142 TTAAAACGCCGCTAAAAA-CAGAGAAATAGCGGCGCTTTTG
1 GTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG
* *
13586182 GTAAAACGCCGCTAAAAACCAGAGTATTAGCGGCACTTTTG
1 GTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG
* *
13586223 GTAAAACGCCGCTAAAAACCAGAGCATTAGCGACGTTTTTG
1 GTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG
* *
13586264 ATATAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG
1 GTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG
* *
13586305 GTAAAACGCCGCTATAAACCAGAGTATTAGCGGCGCTATTT-
1 GTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCT-TTTG
*
13586346 GTAAAACGCCACTAAAA
1 GTAAAACGCCGCTAAAA
13586363 GTCATATAAC
Statistics
Matches: 195, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 22 0.11
41 170 0.87
42 3 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (41 bp):
GTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG
Found at i:13586324 original size:123 final size:122
Alignment explanation
Indices: 13586101--13586362 Score: 375
Period size: 123 Copynumber: 2.1 Consensus size: 122
13586091 CAGAGCAATA
* * * *
13586101 GTAAAACGCCGCTAAAAACGGAGCAATACCGGCATTTTTTGTTAAAACGCCGCTAAAAACAGAGA
1 GTAAAACGCCGCTAAAAACAGAGCAATACCGACAGTTTTTGATAAAACGCCGCTAAAAACAGAGA
13586166 AATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGTATTAGCGGCACT-TTT
66 AATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGTATTAGCGGCACTATTT
* * *
13586222 GGTAAAACGCCGCTAAAAACCAGAGCATTAGCGAC-GTTTTTGATATAACGCCGCTAAAAACCAG
1 -GTAAAACGCCGCTAAAAA-CAGAGCAATACCGACAGTTTTTGATAAAACGCCGCTAAAAA-CAG
* * * *
13586286 AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTATAAACCAGAGTATTAGCGGCGCTATTT
63 AGAAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGTATTAGCGGCACTATTT
*
13586346 GTAAAACGCCACTAAAA
1 GTAAAACGCCGCTAAAA
13586363 GTCATATAAC
Statistics
Matches: 125, Mismatches: 12, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
122 40 0.32
123 82 0.66
124 3 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (122 bp):
GTAAAACGCCGCTAAAAACAGAGCAATACCGACAGTTTTTGATAAAACGCCGCTAAAAACAGAGA
AATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGTATTAGCGGCACTATTT
Found at i:13586914 original size:21 final size:21
Alignment explanation
Indices: 13586888--13586943 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
13586878 GAGTTACTAT
*
13586888 TTTAAGGTTTAGGGATTATGG
1 TTTAAGGTTTAGGGATTAAGG
* * *
13586909 TTTAAGGGTTGGGGTTTAAGG
1 TTTAAGGTTTAGGGATTAAGG
13586930 TTT-AGGTGTTAGGG
1 TTTAAGGT-TTAGGG
13586944 GTTAGGGGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (21 bp):
TTTAAGGTTTAGGGATTAAGG
Found at i:13586941 original size:7 final size:7
Alignment explanation
Indices: 13586931--13586989 Score: 73
Period size: 7 Copynumber: 8.4 Consensus size: 7
13586921 GGTTTAAGGT
*
13586931 TTAGGTG
1 TTAGGGG
13586938 TTAGGGG
1 TTAGGGG
13586945 TTAGGGG
1 TTAGGGG
*
13586952 TTAGGAG
1 TTAGGGG
13586959 TTAGGGG
1 TTAGGGG
*
13586966 TTAGAGG
1 TTAGGGG
*
13586973 TTAGAGG
1 TTAGGGG
*
13586980 TTAAGGG
1 TTAGGGG
13586987 TTA
1 TTA
13586990 AGTGTTCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.22, C:0.00, G:0.46, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:13590414 original size:18 final size:17
Alignment explanation
Indices: 13590393--13590427 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
13590383 TTATTATTTA
13590393 ATATATTTTAATTAAAAT
1 ATATATTTTAA-TAAAAT
13590411 ATATATTTTAATAAAAT
1 ATATATTTTAATAAAAT
13590428 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTTTAATAAAAT
Found at i:13590596 original size:47 final size:46
Alignment explanation
Indices: 13590530--13590696 Score: 146
Period size: 47 Copynumber: 3.6 Consensus size: 46
13590520 TTAATTAAAA
*
13590530 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTATCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTATCT
* * * * * *
13590577 TATATGAATTTGTATAATTTAAAATAATTATTATTACATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTATCT
* * * *
13590622 TA-AT-AATAATATATAATTTCATAA-AATTCTTAATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATT-ATAATAATAAATTATCT
*
13590668 TATATGAATTTATACAATTTAAAATAATT
1 TATATGAATTTATATAATTTAAAATAATT
13590697 CGGATCAATC
Statistics
Matches: 92, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
43 3 0.03
44 15 0.16
45 14 0.15
46 13 0.14
47 40 0.43
48 7 0.08
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTATCT
Found at i:13590618 original size:26 final size:28
Alignment explanation
Indices: 13590589--13590660 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
13590579 TATGAATTTG
*
13590589 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
13590615 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
13590643 TAAAATTCTTAATAATAA
1 TATAA-T-TTAATAATAA
13590661 ATTTTCTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 10 0.26
27 6 0.15
28 12 0.31
29 1 0.03
30 10 0.26
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:13590856 original size:22 final size:22
Alignment explanation
Indices: 13590828--13590872 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
13590818 ACTAAGCTTG
13590828 AATTTCATTAAATTACTTTCAA
1 AATTTCATTAAATTACTTTCAA
13590850 AATTTCATTAAATTACTTTCAA
1 AATTTCATTAAATTACTTTCAA
13590872 A
1 A
13590873 GTTAAGGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (22 bp):
AATTTCATTAAATTACTTTCAA
Found at i:13595278 original size:19 final size:19
Alignment explanation
Indices: 13595256--13595296 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
13595246 TTTATTGATA
13595256 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
13595274 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
13595293 TTTT
1 TTTT
13595297 GATTCTAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:13595615 original size:43 final size:43
Alignment explanation
Indices: 13595551--13595686 Score: 227
Period size: 43 Copynumber: 3.2 Consensus size: 43
13595541 ATTTTATGGC
*
13595551 CTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGAT
13595594 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGAT
* * * *
13595637 TTTTAGCGGCATTTATGGAAAAAGCGCCGCTAAAGGTCATGAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGAT
13595680 CTTTAGC
1 CTTTAGC
13595687 AACGTTTTTT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGAT
Found at i:13596017 original size:26 final size:26
Alignment explanation
Indices: 13595986--13596093 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
13595976 TGATACAAAT
*
13595986 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * *
13596012 TTATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13596038 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
13596064 TGATAATGGTTTAAGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13596090 TGAT
1 TGAT
13596094 GGGAATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.05, G:0.22, T:0.40
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:13597450 original size:19 final size:19
Alignment explanation
Indices: 13597426--13597472 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
13597416 TTTGGGCTTA
13597426 ATGGGCCAAAATTGGAATG
1 ATGGGCCAAAATTGGAATG
13597445 ATGGGCCAAAATTGGAATG
1 ATGGGCCAAAATTGGAATG
13597464 ATGGGCCAA
1 ATGGGCCAA
13597473 CGGGCCCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.32, T:0.19
Consensus pattern (19 bp):
ATGGGCCAAAATTGGAATG
Found at i:13599305 original size:33 final size:33
Alignment explanation
Indices: 13599249--13599329 Score: 83
Period size: 33 Copynumber: 2.4 Consensus size: 33
13599239 ACATCGCCGT
*
13599249 TCCAACCAAACACA-CAAGATGCTCACACGAGCCAA
1 TCCAACC-AACACATC-A-ATGCTCACAAGAGCCAA
** * *
13599284 TCCCTCCAACACATCAATGCTCATAAGAGCTAA
1 TCCAACCAACACATCAATGCTCACAAGAGCCAA
13599317 TCCAACCAACACA
1 TCCAACCAACACA
13599330 CCAAACAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
33 25 0.66
34 7 0.18
35 6 0.16
ACGTcount: A:0.41, C:0.37, G:0.09, T:0.14
Consensus pattern (33 bp):
TCCAACCAACACATCAATGCTCACAAGAGCCAA
Found at i:13602494 original size:20 final size:20
Alignment explanation
Indices: 13602459--13602509 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
13602449 GCAAAACAAG
**
13602459 AGTATCGATA-TTTATTATT
1 AGTATCGATACTTTATTAAA
*
13602478 TGTATCGATACTTTATTAAA
1 AGTATCGATACTTTATTAAA
13602498 AGTATCGATACT
1 AGTATCGATACT
13602510 CATATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
AGTATCGATACTTTATTAAA
Found at i:13602517 original size:20 final size:20
Alignment explanation
Indices: 13602479--13602526 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
13602469 TTTATTATTT
*
13602479 GTATCGATACTTTATTAAAA
1 GTATCGATACTATATTAAAA
13602499 GTATCGATACTCATA-TAAAA
1 GTATCGATACT-ATATTAAAA
13602519 --ATCGATAC
1 GTATCGATAC
13602527 CATTTTAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 8 0.31
20 16 0.62
21 2 0.08
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (20 bp):
GTATCGATACTATATTAAAA
Found at i:13605136 original size:43 final size:42
Alignment explanation
Indices: 13604981--13605137 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
13604971 TGTGTTTCCG
* * * *
13604981 TGTAAGACCATGTCTGGGACGTTGGCAACGACT-TATGATTTA
1 TGTAAGACCATGTCTGGGACATTGGCATCGA-TATTTGATTCA
** *
13605023 TGTGTAAGACCATGTCTGGGACATCAGCATCG-TATTTGATTTCG
1 --TGTAAGACCATGTCTGGGACATTGGCATCGATATTTGA-TTCA
* * *
13605067 TGTAAGACCCTGTCTGGGATAATGGCATCGATATTTGATTGCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATT-CA
*
13605110 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
13605138 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 28 0.30
43 36 0.39
44 28 0.30
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTCA
Found at i:13609264 original size:84 final size:84
Alignment explanation
Indices: 13609176--13609495 Score: 453
Period size: 84 Copynumber: 3.8 Consensus size: 84
13609166 TACTGGCACC
* *
13609176 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACAAAAGTGCATCATTGGATAAACCG
1 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
13609241 AAGCAATCATACTAAAACA
66 AAGCAATCATACTAAAACA
* * * * * * *
13609260 TAAGTGCATTATCAGATAAACCAAAGCAATCATACTAGCACATAAGTGCCTTATCAGATAAACTG
1 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
**
13609325 AAGCAATCATACTGGAACA
66 AAGCAATCATACTAAAACA
* * *
13609344 TAAGTGCATCATTGAATAAACCAAAGCAATTATACTGGCACATAAGTGCATCATCGGATAAACCG
1 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
* **
13609409 AAGCAATCATACTATAATG
66 AAGCAATCATACTAAAACA
* *
13609428 TAAGTGCATCATGGGATAAACCAAAGCAATCATACTGGCACATAACTGCATCATC-GACTAAACC
1 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGA-TAAACC
13609492 GAAG
65 GAAG
13609496 TATAAACTTG
Statistics
Matches: 206, Mismatches: 29, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
83 2 0.01
84 204 0.99
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (84 bp):
TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
AAGCAATCATACTAAAACA
Found at i:13609320 original size:126 final size:124
Alignment explanation
Indices: 13609093--13609495 Score: 418
Period size: 126 Copynumber: 3.2 Consensus size: 124
13609083 CTGGAACCGT
** * * * *
13609093 AGTGCATCATCAGATAAATCGAAGGATATATACTAGAACACAT-AGTGCATCT-TCGAGAAATCA
1 AGTGCATCATTGGATAAACCGAAGCA-ATATACTA-AA-ACATAAGTGCAT-TATCGATAAACCA
* * *
13609156 GAAGCAAAT-ATACTGGCACCTAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACAAA
62 -AAGC-AATCATACTAGCACATAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATA
13609220 AGTGCATCATTGGATAAACCGAAGCAATCATACTAAAACATAAGTGCATTATCAGATAAACCAAA
1 AGTGCATCATTGGATAAACCGAAGCAAT-ATACTAAAACATAAGTGCATTATC-GATAAACCAAA
* * * ** *
13609285 GCAATCATACTAGCACATAAGTGCCTTATCAGATAAACTGAAGCAATCATACTGGAACATA
64 GCAATCATACTAGCACATAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATA
* * *** * *
13609346 AGTGCATCATTGAATAAACCAAAGCAATTATACTGGCACATAAGTGCATCATCGGATAAACCGAA
1 AGTGCATCATTGGATAAACCGAAGCAA-TATACTAAAACATAAGTGCATTATC-GATAAACCAAA
** ** *
13609411 GCAATCATACTATAATGTAAGTGCATCATGGGATAAACCAAAGCAATCATACTGGCACATA
64 GCAATCATACTAGCACATAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATA
* *
13609472 ACTGCATCA-TCGACTAAACCGAAG
1 AGTGCATCATTGGA-TAAACCGAAG
13609496 TATAAACTTG
Statistics
Matches: 231, Mismatches: 38, Indels: 15
0.81 0.13 0.05
Matches are distributed among these distances:
125 10 0.04
126 185 0.80
127 36 0.16
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (124 bp):
AGTGCATCATTGGATAAACCGAAGCAATATACTAAAACATAAGTGCATTATCGATAAACCAAAGC
AATCATACTAGCACATAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATA
Found at i:13609490 original size:42 final size:42
Alignment explanation
Indices: 13609093--13609491 Score: 378
Period size: 42 Copynumber: 9.5 Consensus size: 42
13609083 CTGGAACCGT
* * * *
13609093 AGTGCATCATCAGATAAATCGAAGGATAT-ATACTAGAACACAT-
1 AGTGCATCATCAGATAAACCAAAGCA-ATCATACT-G-GCACATA
* * * *
13609136 AGTGCATCTTC-GAGAAATCAGAAGCAAAT-ATACTGGCACCTA
1 AGTGCATCATCAGATAAACCA-AAGC-AATCATACTGGCACATA
* *
13609178 AGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACAAA
1 AGTGCATCATCAGATAAACCAAAGCAATCATACTGGCACATA
** * ***
13609220 AGTGCATCATTGGATAAACCGAAGCAATCATACTAAAACATA
1 AGTGCATCATCAGATAAACCAAAGCAATCATACTGGCACATA
* *
13609262 AGTGCATTATCAGATAAACCAAAGCAATCATACTAGCACATA
1 AGTGCATCATCAGATAAACCAAAGCAATCATACTGGCACATA
* * ** *
13609304 AGTGCCTTATCAGATAAACTGAAGCAATCATACTGGAACATA
1 AGTGCATCATCAGATAAACCAAAGCAATCATACTGGCACATA
* *
13609346 AGTGCATCAT-TGAATAAACCAAAGCAATTATACTGGCACATA
1 AGTGCATCATCAG-ATAAACCAAAGCAATCATACTGGCACATA
* * *** **
13609388 AGTGCATCATCGGATAAACCGAAGCAATCATACTATAATGTA
1 AGTGCATCATCAGATAAACCAAAGCAATCATACTGGCACATA
**
13609430 AGTGCATCATGGGATAAACCAAAGCAATCATACTGGCACATA
1 AGTGCATCATCAGATAAACCAAAGCAATCATACTGGCACATA
*
13609472 ACTGCATCATC-GACTAAACC
1 AGTGCATCATCAGA-TAAACC
13609492 GAAGTATAAA
Statistics
Matches: 296, Mismatches: 52, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
41 10 0.03
42 257 0.87
43 28 0.09
44 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.22
Consensus pattern (42 bp):
AGTGCATCATCAGATAAACCAAAGCAATCATACTGGCACATA
Found at i:13609573 original size:16 final size:18
Alignment explanation
Indices: 13609552--13609585 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
13609542 TATAGTTCAA
13609552 TTCAATTT-TCAT-AATT
1 TTCAATTTATCATCAATT
13609568 TTCAATTTATCATCAATT
1 TTCAATTTATCATCAATT
13609586 AACCATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (18 bp):
TTCAATTTATCATCAATT
Found at i:13610356 original size:85 final size:83
Alignment explanation
Indices: 13610260--13610428 Score: 270
Period size: 84 Copynumber: 2.0 Consensus size: 83
13610250 AGATCCCATG
*
13610260 ATAAAAAATCTATAAAAAT-AA-AAAAATAGCTTAGGGACTTACTTACAAATAATGGTCGAAAGC
1 ATAAAAAATCTATAAAAATAAATAAAAATAGCTTAGGG----ACTTACAAATAATAGTCGAAAGC
13610323 TAGCTATCAATGGCGATTCTTT
62 TAGCTATCAATGGCGATTCTTT
13610345 ATAAAAAATCTATAAAAATAAAATAAAAATAGCTTAGGGACTTACAAATAATAGTCGAAAGCTAG
1 ATAAAAAATCTATAAAAAT-AAATAAAAATAGCTTAGGGACTTACAAATAATAGTCGAAAGCTAG
13610410 CTATCAATGGCGATTCTTT
65 CTATCAATGGCGATTCTTT
13610429 CTCTTTTTCT
Statistics
Matches: 80, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
84 44 0.55
85 19 0.24
87 2 0.03
88 15 0.19
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (83 bp):
ATAAAAAATCTATAAAAATAAATAAAAATAGCTTAGGGACTTACAAATAATAGTCGAAAGCTAGC
TATCAATGGCGATTCTTT
Found at i:13615305 original size:3 final size:3
Alignment explanation
Indices: 13615299--13615352 Score: 56
Period size: 3 Copynumber: 17.0 Consensus size: 3
13615289 AATAGGGGTG
*
13615299 ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CATA TATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA
13615347 ATA ATA
1 ATA ATA
13615353 GTAGTCAGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 1 0.02
3 34 0.74
4 11 0.24
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:13615440 original size:3 final size:3
Alignment explanation
Indices: 13615427--13615504 Score: 56
Period size: 3 Copynumber: 25.3 Consensus size: 3
13615417 GAGGGTATAT
13615427 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
13615471 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A
13615505 AAAAATAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
2 7 0.11
3 43 0.70
4 9 0.15
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:13615451 original size:12 final size:12
Alignment explanation
Indices: 13615427--13615504 Score: 72
Period size: 12 Copynumber: 6.3 Consensus size: 12
13615417 GAGGGTATAT
13615427 ATAATAT-AATA
1 ATAATATAAATA
13615438 ATAATATAAATA
1 ATAATATAAATA
13615450 ATAATATATACATGA
1 ATAATATA-A-AT-A
13615465 GA-AATA-ATAATA
1 -ATAATATA-AATA
13615477 ATAATATAAATA
1 ATAATATAAATA
* *
13615489 ATAGTAAAAATA
1 ATAATATAAATA
13615501 ATAA
1 ATAA
13615505 AAAAATAAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
11 8 0.14
12 34 0.60
13 4 0.07
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:13615518 original size:9 final size:10
Alignment explanation
Indices: 13615432--13615516 Score: 76
Period size: 9 Copynumber: 9.1 Consensus size: 10
13615422 TATATATAAT
13615432 ATAAT-AATA
1 ATAATAAATA
13615441 AT-ATAAATA
1 ATAATAAATA
*
13615450 ATAATATATA
1 ATAATAAATA
* *
13615460 CATGAGAAATA
1 -ATAATAAATA
13615471 ATAAT-AATA
1 ATAATAAATA
13615480 AT-ATAAATA
1 ATAATAAATA
*
13615489 ATAGTAAA-A
1 ATAATAAATA
13615498 ATAATAAA-A
1 ATAATAAATA
13615507 A-AATAAATA
1 ATAATAAATA
13615516 A
1 A
13615517 AACAAAGTTC
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
8 10 0.16
9 32 0.52
10 13 0.21
11 7 0.11
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (10 bp):
ATAATAAATA
Found at i:13616545 original size:68 final size:68
Alignment explanation
Indices: 13616424--13616729 Score: 431
Period size: 68 Copynumber: 4.5 Consensus size: 68
13616414 TTGATCTTTT
*
13616424 TCCGCTGAAACTTCAAGGAGATCTG-CTGTGGCTTTTAGCCGCTCCAACGCCATTTCA-GGAAGG
1 TCCGCTGAAACTTCAAGGAGATCTGTC-GTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAA-A
*
13616487 AGAAA
64 AGAGA
* * *
13616492 TCCACTGAAACTTCAAGGAGATCTGTCGTGGCTTTTAGCCGCTCTAACACCATTTCA-GGAAGAA
1 TCCGCTGAAACTTCAAGGAGATCTGTCGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAA-AA
*
13616556 GAGG
65 GAGA
* * *
13616560 TTCGCTGAAACTTCAAGGAGATCTG-CTGTGGCTTTTAACCGCTCCAATGCCATTTCAGGGAAAA
1 TCCGCTGAAACTTCAAGGAGATCTGTC-GTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAA
13616624 GAGA
65 GAGA
* *
13616628 TCCGTTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAG
1 TCCGCTGAAACTTCAAGGAGATCTGTCGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAG
13616693 AGA
66 AGA
* *
13616696 TCTGCTGAAACTTCAAGGAGATCTGTTGTGGCTT
1 TCCGCTGAAACTTCAAGGAGATCTGTCGTGGCTT
13616730 CAAGAAGATA
Statistics
Matches: 214, Mismatches: 20, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
67 1 0.00
68 208 0.97
69 5 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (68 bp):
TCCGCTGAAACTTCAAGGAGATCTGTCGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAG
AGA
Found at i:13617065 original size:87 final size:87
Alignment explanation
Indices: 13616847--13617790 Score: 1265
Period size: 87 Copynumber: 10.9 Consensus size: 87
13616837 TTTCAGCCTA
* * * * *
13616847 TTACCCTATTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGCTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* *
13616912 TAAGATCT-TGAAAATCCAGCCAG
66 TAAGATCTGT-AAATTCCA-CCTG
* ** *
13616935 TTACCCTACTACTTAGGGGTTTAAGGTATATCGCCTTCGATCTGTTTCCCTACTACTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
13617000 TAAGATCTGTAAATTCCACCTG
66 TAAGATCTGTAAATTCCACCTG
* * ** * *
13617022 TTACCCTACTGTTTAGGGGTTTAAGGTCCATCACCTTTTATCTGTTTCCCTAGTACTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* **
13617087 TAAGATCTATAAATTTAACCTG
66 TAAGATCTGTAAATTCCACCTG
* *
13617109 TTACCCTATTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTACTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
13617174 TAAGATCTGTAAATTCCACCTG
66 TAAGATCTGTAAATTCCACCTG
* *
13617196 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTATTTCCCTACTACTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
*
13617261 TAAGATTTGTAAATTCCACCTG
66 TAAGATCTGTAAATTCCACCTG
* * *
13617283 TTACCCTACTGCTTAGAGGTTTAAGGTCCATCGCCTTTGATCTGATTCCCTACTGCTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
*
13617348 TAAGATCTGTAAATTCCACATG
66 TAAGATCTGTAAATTCCACCTG
* *
13617370 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGTCTTTGATCTGTTTCCCTACTGCTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
*
13617435 TAAGATTTGTAAA-TCCAACCTG
66 TAAGATCTGTAAATTCC-ACCTG
* * * *
13617457 TTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATATGTTTCCCTACTGCTTAAGGGTT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* *
13617522 TAAGATCTATAAATT-TAGCCTG
66 TAAGATCTGTAAATTCCA-CCTG
* * *
13617544 TTACCCTACTACTTAGGGAG-TTAAGG-CTTATCGCTTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TTACCCTACTGCTTAGGG-GTTTAAGGTC-CATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGG
* *
13617607 GTTAAGATCTGTAAATTCAACCTA
64 GTTAAGATCTGTAAATTCCACCTG
* * * *
13617631 TTACCCTACTGCTTAGAGGTTTAAGGTTCATCGCATTCGATCTGTTTACCTACTGCTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* *
13617696 TAAGATCTTTAAATT-TAGCCTG
66 TAAGATCTGTAAATTCCA-CCTG
* * * * *
13617718 TTACCCTACTACTTAGGGAG-TTAAGGCCCGTCGCTTTCGATCTGTTTCCCTACTGCTTAGAGGG
1 TTACCCTACTGCTTAGGG-GTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGG
*
13617782 TCAA-ATCTG
65 TTAAGATCTG
13617791 CTATCTTCAA
Statistics
Matches: 761, Mismatches: 84, Indels: 24
0.88 0.10 0.03
Matches are distributed among these distances:
86 10 0.01
87 675 0.89
88 75 0.10
89 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (87 bp):
TTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
TAAGATCTGTAAATTCCACCTG
Found at i:13618020 original size:132 final size:132
Alignment explanation
Indices: 13617783--13618837 Score: 1723
Period size: 132 Copynumber: 8.0 Consensus size: 132
13617773 CTTAGAGGGT
* * * *
13617783 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATTCTGAAATCTTCAATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * *
13617848 CTTCACTGTAAGCACAGTAATGTCAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
13617913 GC
131 GC
*
13617915 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
13617980 CTTTACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
13618045 GC
131 GC
** *
13618047 CAAATCTATTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * *
13618112 CTTTACTGTAAGCACATGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
13618177 GC
131 GC
*
13618179 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGAATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * * *
13618244 CTTCACTGTAAGTATAGGAATGTTAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
13618309 GC
131 GC
* *
13618311 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGACCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
13618376 CTTCACTGTAAGCACAGGAATATCAAATCTGTTATCTTCGATCTATTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
13618441 GC
131 GC
* *
13618443 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTCGATCTA
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
*
13618508 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
13618573 GC
131 GC
* * *
13618575 CAAACCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGAATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
13618640 CTTCACTGTAAGTACAGGAATGTTAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
13618705 GC
131 GC
* *
13618707 CAAATTTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * *
13618772 CTTCGCTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTATTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
13618837 G
131 G
13618838 TCATGCTGAA
Statistics
Matches: 857, Mismatches: 66, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 857 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (132 bp):
CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
GC
Found at i:13618922 original size:87 final size:88
Alignment explanation
Indices: 13617935--13618949 Score: 687
Period size: 88 Copynumber: 11.5 Consensus size: 88
13617925 ATTTTCAACT
*
13617935 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTACTGTAAGCACAGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
*
13618000 TGTCAGATCTGTTATCTTCGATC
66 TGTCAGATCTGCTATCTTCGATC
* * * * *
13618023 TGTTCCCTATAAGCACAGGGATGCCAAAT-CT-ATTATTTTC-AACTTG-TTCCCTATAAGCACA
1 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGA-AATCTTCGATC-TGCTTCACTGTAAGCACA
* * ** *
13618084 GGGATG-C-CATGCTGAAATCTTTGATC
62 GGAATGTCAGAT-CTGCTATCTTCGATC
** * * * * ** * *
13618110 TGCTTTACTGTAAGCACATGAATGTCA-GATCTGTTATCTTCGATCTG-TTCCCTATAAGCACAG
1 TG-TTCCCTATAAGCACAGGGATGCCATG--CTGAAATCTTCGATCTGCTTCACTGTAAGCACAG
* * * * *
13618173 GGATGCCAAATCTGCTATTTTC-AAC
63 GAATGTCAGATCTGCTATCTTCGATC
* * *
13618198 TTGTTCCCTATAAGCACAGGAATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGTATAGGA
1 -TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGA
* *
13618263 ATGTTAGATCTGCTATCTTCGATA
65 ATGTCAGATCTGCTATCTTCGATC
* ** * * * *
13618287 TGTTCCCTATAAACACAGGGATGCCAAAT-CTGTTATTTTC-AACTTG-TTCCCTATAAGCACAG
1 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGATC-TGCTTCACTGTAAGCACAG
* * ** *
13618349 GGATG-C-CATGCTGAAATCTTCGACC
63 GAATGTCAGAT-CTGCTATCTTCGATC
* * * * * ** * * *
13618374 TGCTTCACTGTAAGCACAGGAATATCAAAT-CTGTTATCTTCGATCT-ATTCCCTATAAGCACAG
1 TG-TTCCCTATAAGCACAGGGAT-GC-CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAG
* * * * *
13618437 GGATGCCAAATCTGCTATTTTC-AAC
63 GAATGTCAGATCTGCTATCTTCGATC
* *
13618462 TTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGA
1 -TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGA
*
13618527 ATGTCAGATCTGCTATCTTTGATC
65 ATGTCAGATCTGCTATCTTCGATC
** ** * * * * *
13618551 TGTTCCCTATAAGCACAGGGATGCCAAACCTGCTATTTTC-AACTTG-TTCCCTATAAGCACAAG
1 TGTTCCCTATAAGCACAGGGATGCC-ATGCTGAAATCTTCGATC-TGCTTCACTGTAAGCACAGG
* **
13618614 AATG-C-CATGCTGAAATCTTCGATC
64 AATGTCAGAT-CTGCTATCTTCGATC
* * * * ** ** * * * *
13618638 TGCTTCACTGTAAGTACAGGAATGTTA-GATCTGCTATCTTCGATATG-TTCCCTATAAACACAG
1 TG-TTCCCTATAAGCACAGGGATGCCATG--CTGAAATCTTCGATCTGCTTCACTGTAAGCACAG
* * * * * * *
13618701 GGATGCCAAATTTGTTATTTTC-AAC
63 GAATGTCAGATCTGCTATCTTCGATC
*
13618726 TTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGA
1 -TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGA
*
13618791 ATGTCAGATCTGTTATCTTCGATC
65 ATGTCAGATCTGCTATCTTCGATC
* * *
13618815 TATTCCCTATAAGCACAGGGATGTCATGCTGAAATCTTCGATCTGCTTCACTG-AAGCACGGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
*
13618879 TGTCAGATCTGCTATCTTTGATC
66 TGTCAGATCTGCTATCTTCGATC
** * *
13618902 TGTTCCCTATAAATATAGGGATGCCAAAT-CTGCAATCTTCGATCTGCT
1 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGATCTGCT
13618950 CTCCGCCGCT
Statistics
Matches: 725, Mismatches: 155, Indels: 94
0.74 0.16 0.10
Matches are distributed among these distances:
86 9 0.01
87 139 0.19
88 492 0.68
89 75 0.10
90 10 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (88 bp):
TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
TGTCAGATCTGCTATCTTCGATC
Found at i:13619070 original size:88 final size:88
Alignment explanation
Indices: 13618937--13619168 Score: 403
Period size: 88 Copynumber: 2.6 Consensus size: 88
13618927 AAATCTGCAA
* * * *
13618937 TCTTCGATCTGCTCTCCGCC-GCTACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
13619001 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
13619024 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
*
13619089 ACGTGAAAGCCAAATTAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
*
13619112 TTTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCA
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCA
13619169 GCGAACGTCA
Statistics
Matches: 138, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
87 19 0.14
88 119 0.86
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (88 bp):
TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
ACGTGAAAGCCAAATCAGCTATG
Found at i:13619101 original size:41 final size:41
Alignment explanation
Indices: 13618968--13619103 Score: 107
Period size: 41 Copynumber: 3.2 Consensus size: 41
13618958 CTACAGAGAC
*
13618968 GCCAAATCATCTTGGATTTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
* ** * * *
13619009 GCCAAATCAGCTATGTCTTCGATCTGC-TCCCCGCCTGATACA-GAG-AT
1 GCCAAAT---C-A--TCTTGGATCTGCTTCAACG--T-AAACACGTGAAA
13619056 GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
13619097 GCCAAAT
1 GCCAAAT
13619104 TAGCTATGTT
Statistics
Matches: 70, Mismatches: 13, Indels: 24
0.65 0.12 0.22
Matches are distributed among these distances:
39 4 0.06
40 3 0.04
41 26 0.37
42 4 0.06
43 1 0.01
44 2 0.03
45 1 0.01
46 4 0.06
47 18 0.26
48 3 0.04
49 4 0.06
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (41 bp):
GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
Found at i:13619148 original size:47 final size:47
Alignment explanation
Indices: 13619009--13619150 Score: 122
Period size: 47 Copynumber: 3.1 Consensus size: 47
13618999 ACACGTGAAA
*
13619009 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
1 GCCAAATTAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
* ** * * *
13619056 GCCAAA-T--C-A--TCTTGGATCTGCTTCAACG--T-AAACACGTGAAA
1 GCCAAATTAGCTATGTCTTCGATCTGC-TCCCCGCCTGATACA-GAG-AT
*
13619097 GCCAAATTAGCTATGTTTTCGATCTGCTCCCCGCCTGATACAGAGAT
1 GCCAAATTAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
13619144 GCCAAAT
1 GCCAAAT
13619151 CATCTTGGAT
Statistics
Matches: 69, Mismatches: 14, Indels: 24
0.64 0.13 0.22
Matches are distributed among these distances:
39 4 0.06
40 3 0.04
41 18 0.26
42 5 0.07
43 1 0.01
44 2 0.03
45 1 0.01
46 4 0.06
47 24 0.35
48 3 0.04
49 4 0.06
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (47 bp):
GCCAAATTAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
Found at i:13621053 original size:9 final size:9
Alignment explanation
Indices: 13621041--13621120 Score: 60
Period size: 9 Copynumber: 8.7 Consensus size: 9
13621031 CTTTTTGGCA
13621041 TTTTTTG-T
1 TTTTTTGTT
13621049 TTTTTTGTT
1 TTTTTTGTT
13621058 TTTTTTG-T
1 TTTTTTGTT
*
13621066 TGTTTTGTT
1 TTTTTTGTT
*
13621075 TTCTTCTTCTT
1 TT-TT-TTGTT
13621086 CTTTTTTGTGT
1 -TTTTTTGT-T
13621097 TTTTTT-TT
1 TTTTTTGTT
13621105 TATTTTT-TT
1 T-TTTTTGTT
13621114 TATTTTT
1 T-TTTTT
13621121 TAAATTTTGA
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
8 16 0.26
9 25 0.41
10 11 0.18
11 7 0.11
12 2 0.03
ACGTcount: A:0.03, C:0.05, G:0.09, T:0.84
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:13625890 original size:130 final size:130
Alignment explanation
Indices: 13625647--13625890 Score: 293
Period size: 130 Copynumber: 1.9 Consensus size: 130
13625637 ATTAGGTTGG
* * *
13625647 ATATAATGATAATAATAATATTAAAGTAAAGTAAATAATAATACTATATATAAATATATATATAT
1 ATATAATAAAAATAATAATATTAAAGTAAAG-AAAAAATAATACTATATATAAATATATATATA-
* * * *
13625712 GTATATAATAGAAATACACACTACTATATAATAATAATCATAATAAATATAGAAATACAGAAAGC
64 GTACATAATAGAAATACACAATACTATATAATAATAATAATAAAAAATATAGAAATACAGAAAGC
13625777 AA
129 AA
*
13625779 ATATAATAAAAATATTAA-ATTAAAGTAATA-AAAAAATAATACTATATATAAATATATATATA-
1 ATATAATAAAAATAATAATATTAAAGTAA-AGAAAAAATAATACTATATATAAATATATATATAG
*
13625841 TACATAA-A-AACATACACTAATA-TATAATAATAATAGTAATAGCAAAAATA
65 TACATAATAGAA-ATACAC-AATACTAT-ATAATAATAATAATA--AAAAATA
13625891 ATGAAAATAT
Statistics
Matches: 97, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
126 2 0.02
127 10 0.10
128 22 0.23
130 37 0.38
131 10 0.10
132 16 0.16
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.31
Consensus pattern (130 bp):
ATATAATAAAAATAATAATATTAAAGTAAAGAAAAAATAATACTATATATAAATATATATATAGT
ACATAATAGAAATACACAATACTATATAATAATAATAATAAAAAATATAGAAATACAGAAAGCAA
Found at i:13625962 original size:3 final size:3
Alignment explanation
Indices: 13625956--13626023 Score: 77
Period size: 3 Copynumber: 22.0 Consensus size: 3
13625946 AATAGGGGTG
*
13625956 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
13626001 ATA CAT- ATA TATA TATA ATA ATA
1 ATA -ATA ATA -ATA -ATA ATA ATA
13626024 GTAGTCAGAA
Statistics
Matches: 59, Mismatches: 1, Indels: 10
0.84 0.01 0.14
Matches are distributed among these distances:
2 3 0.05
3 46 0.78
4 10 0.17
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:13626111 original size:3 final size:3
Alignment explanation
Indices: 13626098--13626186 Score: 62
Period size: 3 Copynumber: 29.3 Consensus size: 3
13626088 GAGGGTATAT
13626098 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* * *
13626142 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA AAA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13626186 A
1 A
13626187 AACAAGGATC
Statistics
Matches: 69, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
2 9 0.13
3 49 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:13626128 original size:30 final size:30
Alignment explanation
Indices: 13626094--13626186 Score: 82
Period size: 33 Copynumber: 2.9 Consensus size: 30
13626084 TGGAGAGGGT
13626094 ATATATAATATAATAATAATATAAATAATA
1 ATATATAATATAATAATAATATAAATAATA
*
13626124 ATATATACATGAGAAATAATAATAATAATATAAATA
1 ATATATA-AT-A-TAATAATAAT-ATAA-AT-AATA
* *
13626160 ATAGTA-AAAATAATAA-AATAAAAATAA
1 ATA-TATAATATAATAATAATATAAATAA
13626187 AACAAGGATC
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
29 2 0.04
30 9 0.17
31 5 0.10
32 4 0.08
33 14 0.27
34 5 0.10
35 3 0.06
36 8 0.15
37 2 0.04
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (30 bp):
ATATATAATATAATAATAATATAAATAATA
Found at i:13626142 original size:21 final size:18
Alignment explanation
Indices: 13626103--13626162 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
13626093 TATATATAAT
*
13626103 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
13626121 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
13626142 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
13626160 ATA
1 ATA
13626163 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:13626187 original size:30 final size:30
Alignment explanation
Indices: 13626098--13626187 Score: 80
Period size: 30 Copynumber: 3.0 Consensus size: 30
13626088 GAGGGTATAT
* * *
13626098 ATAATA-TAATAATAATATAAATAATAATAT
1 ATAATAGTAAAAATAATA-AAATAAAAATAA
* *
13626128 ATACAT-G-AGAAATAATAATAAT-AATATAA
1 ATA-ATAGTAAAAATAATAA-AATAAAAATAA
13626157 ATAATAGTAAAAATAATAAAATAAAAATAA
1 ATAATAGTAAAAATAATAAAATAAAAATAA
13626187 A
1 A
13626188 ACAAGGATCT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
28 2 0.04
29 12 0.26
30 31 0.66
31 2 0.04
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (30 bp):
ATAATAGTAAAAATAATAAAATAAAAATAA
Found at i:13627142 original size:24 final size:24
Alignment explanation
Indices: 13627091--13627143 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
13627081 AGTTGCAATA
*
13627091 GTTTTTGGCTTTAAGGTTTTAATT
1 GTTTTTGGCTTTAAGGTTTTAATG
13627115 GTTTTTGGCTTT-AGTTGTTTTAA-G
1 GTTTTTGGCTTTAAG--GTTTTAATG
13627139 GTTTT
1 GTTTT
13627144 AATTGGTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 2 0.08
24 17 0.65
25 7 0.27
ACGTcount: A:0.13, C:0.04, G:0.23, T:0.60
Consensus pattern (24 bp):
GTTTTTGGCTTTAAGGTTTTAATG
Found at i:13630381 original size:37 final size:38
Alignment explanation
Indices: 13630318--13630412 Score: 97
Period size: 37 Copynumber: 2.6 Consensus size: 38
13630308 CAGAAAATAG
* **
13630318 TAAGATTT-ACTCAGTTA-AGCTCCATTCAATATAACGG
1 TAAGATTTGACTC-GATAGAGCTCCATTCAATATAACAA
* * * *
13630355 TATGATTTG-CTCGATTGAGCTTCATTCAGTATAACAA
1 TAAGATTTGACTCGATAGAGCTCCATTCAATATAACAA
13630392 TAAGATTTGACTCGATAGAGC
1 TAAGATTTGACTCGATAGAGC
13630413 GTACTTCTAG
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
36 2 0.04
37 34 0.74
38 10 0.22
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (38 bp):
TAAGATTTGACTCGATAGAGCTCCATTCAATATAACAA
Found at i:13634333 original size:29 final size:29
Alignment explanation
Indices: 13634300--13634362 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
13634290 GGTGGGATGG
*
13634300 GAAGGGAGTAAAAGTTTTAGGGGAAAATA
1 GAAGGGAGTAAAAATTTTAGGGGAAAATA
*
13634329 GAAGGGAGTAAAAATTTTGGGGGAAAATA
1 GAAGGGAGTAAAAATTTTAGGGGAAAATA
*
13634358 AAAGG
1 GAAGG
13634363 TTTTGAGGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.35, T:0.19
Consensus pattern (29 bp):
GAAGGGAGTAAAAATTTTAGGGGAAAATA
Found at i:13634616 original size:18 final size:18
Alignment explanation
Indices: 13634572--13634617 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
13634562 TATAGTTTGA
*
13634572 TATTCGATTTATTCGAGT
1 TATTCGAATTATTCGAGT
*
13634590 TAGTT-GAATTATTTGAGT
1 TA-TTCGAATTATTCGAGT
13634608 TATTCGAATT
1 TATTCGAATT
13634618 CAAAAACTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 2 0.08
18 20 0.83
19 2 0.08
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (18 bp):
TATTCGAATTATTCGAGT
Found at i:13635986 original size:42 final size:40
Alignment explanation
Indices: 13635862--13635987 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 40
13635852 GAGAAAGCTG
* * * *
13635862 AAGCAAATATACTAGCACCTAAGTGCATCATCGGTCAAATCG
1 AAGC-AATATACTGGCACATAAGTGCATCATCGGT-AAACCA
* *
13635904 AAGCAATTATACTGGTACACAT-AGTGCATCATTAGATAAACCA
1 AAGCAA-TATACTGG--CACATAAGTGCATCA-TCGGTAAACCA
13635947 AAGCAATCATACTGGCACATAAGTGCATCATCGGCTAAACC
1 AAGCAAT-ATACTGGCACATAAGTGCATCATCGG-TAAACC
13635988 GAAGTATAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
41 9 0.13
42 27 0.39
43 26 0.38
44 7 0.10
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (40 bp):
AAGCAATATACTGGCACATAAGTGCATCATCGGTAAACCA
Found at i:13637026 original size:14 final size:13
Alignment explanation
Indices: 13637007--13637048 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 13
13636997 ATGGTTATTC
13637007 TTTAATTAATTTTA
1 TTTAATT-ATTTTA
13637021 TTTAATTATTTTAA
1 TTTAATTATTTT-A
13637035 TTATAATTATTTTA
1 TT-TAATTATTTTA
13637049 ACTTTAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.19
14 11 0.42
15 10 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATTATTTTA
Found at i:13637043 original size:15 final size:14
Alignment explanation
Indices: 13637007--13637056 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 14
13636997 ATGGTTATTC
13637007 TTTAATTAATTTT-A
1 TTTAATT-ATTTTAA
13637021 TTTAATTATTTTAA
1 TTTAATTATTTTAA
13637035 TTATAATTATTTTAA
1 TT-TAATTATTTTAA
13637050 CTTTAAT
1 -TTTAAT
13637057 GGCCAACATC
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.15
14 10 0.30
15 16 0.48
16 2 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTAATTATTTTAA
Found at i:13643735 original size:20 final size:20
Alignment explanation
Indices: 13643699--13643737 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13643689 TAATACTATT
*
13643699 TATAAAAATATATATATACG
1 TATAAAAATATACATATACG
13643719 TATAATAAA-ATACATATAC
1 TATAA-AAATATACATATAC
13643738 TAATATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (20 bp):
TATAAAAATATACATATACG
Found at i:13643772 original size:21 final size:20
Alignment explanation
Indices: 13643686--13643776 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 20
13643676 GGATATATGA
*
13643686 AAATAATACTATTTATAAAAAT
1 AAAT-ATACTA-TAATAAAAAT
13643708 ATATATATACGTATAAT-AAAAT
1 A-A-ATATAC-TATAATAAAAAT
* * *
13643730 ACATATACTAATATTAATAAT
1 AAATATACT-ATAATAAAAAT
*
13643751 AAATATACTAGGAATAAAAAT
1 AAATATACTA-TAATAAAAAT
13643772 AAATA
1 AAATA
13643777 AAATAATAGT
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
19 1 0.02
20 11 0.20
21 24 0.44
22 7 0.13
23 8 0.15
24 4 0.07
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.33
Consensus pattern (20 bp):
AAATATACTATAATAAAAAT
Found at i:13644208 original size:21 final size:22
Alignment explanation
Indices: 13644184--13644231 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
13644174 TAATGGTAAT
*
13644184 AATATTAAAATACAA-AAAAAG
1 AATAATAAAATACAATAAAAAG
* *
13644205 AATAATAAAATATAATAAAAAT
1 AATAATAAAATACAATAAAAAG
13644227 AATAA
1 AATAA
13644232 AGTAATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (22 bp):
AATAATAAAATACAATAAAAAG
Found at i:13645041 original size:13 final size:13
Alignment explanation
Indices: 13644998--13645044 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
13644988 AAAAGGTACA
*
13644998 TTTTTTAT-TATT
1 TTTTTTATATGTT
* *
13645010 ATTTTT-TATGCT
1 TTTTTTATATGTT
13645022 TTTTTTATATGTT
1 TTTTTTATATGTT
13645035 TTTTTTATAT
1 TTTTTTATAT
13645045 ATATGTATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
11 1 0.04
12 12 0.43
13 15 0.54
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (13 bp):
TTTTTTATATGTT
Found at i:13645558 original size:35 final size:35
Alignment explanation
Indices: 13645509--13645610 Score: 152
Period size: 35 Copynumber: 2.9 Consensus size: 35
13645499 AGGGTTTTAA
*
13645509 TGGGT-ATTAGGTTGTATTTGGGTTTTAGGGGATT
1 TGGGTAATTGGGTTGTATTTGGGTTTTAGGGGATT
*
13645543 TGGGTAATTGGGTTGTATTTGGGTTTTAGGGGGTT
1 TGGGTAATTGGGTTGTATTTGGGTTTTAGGGGATT
* *
13645578 TGGATAATTGGGGCTGTATTTGGGTTTTAGGGG
1 TGGGTAATT-GGGTTGTATTTGGGTTTTAGGGG
13645611 GTTAGTGGGT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
34 5 0.08
35 35 0.56
36 22 0.35
ACGTcount: A:0.14, C:0.01, G:0.41, T:0.44
Consensus pattern (35 bp):
TGGGTAATTGGGTTGTATTTGGGTTTTAGGGGATT
Found at i:13651251 original size:13 final size:15
Alignment explanation
Indices: 13651228--13651260 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
13651218 TTTGTTTTGT
13651228 TTTTCTTTCTTTTC-
1 TTTTCTTTCTTTTCA
13651242 TTTT-TTTCTTTTCA
1 TTTTCTTTCTTTTCA
13651256 TTTTC
1 TTTTC
13651261 CTCAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTCTTTTCA
Found at i:13657957 original size:28 final size:29
Alignment explanation
Indices: 13657915--13657975 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 29
13657905 TTTACTCTTT
*
13657915 AAAAGTATATAAAAAT-TAA-ATGTTT-TA
1 AAAAATATATAAAAATATAACAT-TTTCTA
13657942 AAAAATATATGAAAAATATAACATTTTCTA
1 AAAAATATAT-AAAAATATAACATTTTCTA
13657972 AAAA
1 AAAA
13657976 TTTCAATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 9 0.31
28 6 0.21
29 6 0.21
30 8 0.28
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (29 bp):
AAAAATATATAAAAATATAACATTTTCTA
Found at i:13657975 original size:29 final size:26
Alignment explanation
Indices: 13657912--13657976 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 26
13657902 ATCTTTACTC
*
13657912 TTTAAAAGTATATAAAAATTAAATGT
1 TTTAAAAATATATAAAAATTAAATGT
13657938 TTTAAAAAATATATGAAAAATATAACAT-T
1 TTT-AAAAATATAT-AAAAAT-TAA-ATGT
13657967 TTCTAAAAAT
1 TT-TAAAAAT
13657977 TTCAATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
26 3 0.09
27 9 0.27
28 6 0.18
29 12 0.36
30 3 0.09
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (26 bp):
TTTAAAAATATATAAAAATTAAATGT
Found at i:13658136 original size:21 final size:22
Alignment explanation
Indices: 13658112--13658152 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
13658102 TTTTTTCGAA
13658112 TTGAGTCGAGT-GAAATGAAAT
1 TTGAGTCGAGTCGAAATGAAAT
*
13658133 TTGAGTCGAGTCGAATTGAA
1 TTGAGTCGAGTCGAAATGAA
13658153 TCGAGTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.29
Consensus pattern (22 bp):
TTGAGTCGAGTCGAAATGAAAT
Found at i:13663440 original size:49 final size:49
Alignment explanation
Indices: 13663363--13663456 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 49
13663353 TGCTATGTAA
* * * *
13663363 TGATAAACTTGGTCTTTCATTGCCTACACTTTTATCACTATTTATACAT
1 TGATAAACTTAGTCTTCCACTGCCTACACTCTTATCACTATTTATACAT
**
13663412 TGATAAACTTAGTCTTCCACTGTTTACACTCTTATCACTATTTAT
1 TGATAAACTTAGTCTTCCACTGCCTACACTCTTATCACTATTTAT
13663457 CCCTTCTTGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.45
Consensus pattern (49 bp):
TGATAAACTTAGTCTTCCACTGCCTACACTCTTATCACTATTTATACAT
Found at i:13664915 original size:27 final size:26
Alignment explanation
Indices: 13664894--13664948 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
13664884 TCATTTTAAG
13664894 TTTCACATCTCATTTCATCATTTCATA
1 TTTCACATCTCATTTC-TCATTTCATA
**
13664921 TTTCATTTCTCATTTCTCATTTCATA
1 TTTCACATCTCATTTCTCATTTCATA
13664947 TT
1 TT
13664949 CATTTCTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTCACATCTCATTTCTCATTTCATA
Found at i:13664935 original size:19 final size:19
Alignment explanation
Indices: 13664903--13664958 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
13664893 GTTTCACATC
13664903 TCATTTCATCATTTCAT-ATT
1 TCATTTC-TCATTTC-TCATT
13664923 TCATTTCTCATTTCTCATT
1 TCATTTCTCATTTCTCATT
*
13664942 TCATAT-TCATTTCTCAT
1 TCATTTCTCATTTCTCAT
13664959 CTTTGCCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
18 12 0.35
19 15 0.44
20 7 0.21
ACGTcount: A:0.21, C:0.23, G:0.00, T:0.55
Consensus pattern (19 bp):
TCATTTCTCATTTCTCATT
Found at i:13664956 original size:25 final size:27
Alignment explanation
Indices: 13664901--13664958 Score: 102
Period size: 25 Copynumber: 2.2 Consensus size: 27
13664891 AAGTTTCACA
13664901 TCTCATTTCATCATTTCATATTTCATT
1 TCTCATTTCATCATTTCATATTTCATT
13664928 TCTCATTTC-TCATTTCATA-TTCATT
1 TCTCATTTCATCATTTCATATTTCATT
13664953 TCTCAT
1 TCTCAT
13664959 CTTTGCCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 12 0.39
26 10 0.32
27 9 0.29
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (27 bp):
TCTCATTTCATCATTTCATATTTCATT
Found at i:13664989 original size:43 final size:43
Alignment explanation
Indices: 13664933--13665017 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
13664923 TCATTTCTCA
* *
13664933 TTTCTCATTTCATATTCATTTCTCATCTTTGCCATTTCAATAT
1 TTTCTCATCTCATATTCATTTCCCATCTTTGCCATTTCAATAT
*
13664976 TTTCTCATCTCATATTTATTTCCCATCTTTGCCATTTCAATA
1 TTTCTCATCTCATATTCATTTCCCATCTTTGCCATTTCAATA
13665018 ATAATCACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.21, C:0.25, G:0.02, T:0.52
Consensus pattern (43 bp):
TTTCTCATCTCATATTCATTTCCCATCTTTGCCATTTCAATAT
Found at i:13666941 original size:14 final size:15
Alignment explanation
Indices: 13666910--13666941 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13666900 TCCATAACAC
*
13666910 TTTTCAAAATTAATT
1 TTTTCAAAATCAATT
13666925 TTTTCAAAATCAATT
1 TTTTCAAAATCAATT
13666940 TT
1 TT
13666942 CAAGAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTCAAAATCAATT
Done.