Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 42 of 344
Found at i:14036170 original size:32 final size:33
Alignment explanation
Indices: 14036103--14036175 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
14036093 TGGAAAAACT
* * *
14036103 AATATTTTCTAGTGTTTGGATGAATTCGTGTAA
1 AATATTTTCTAGTGTTTGGATAAATTCCTGAAA
*
14036136 AATATTTTCTATTGTTTGGA-AAATTCCCT-AAA
1 AATATTTTCTAGTGTTTGGATAAATT-CCTGAAA
14036168 AATATTTT
1 AATATTTT
14036176 ATAAAAGTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 14 0.40
33 21 0.60
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.47
Consensus pattern (33 bp):
AATATTTTCTAGTGTTTGGATAAATTCCTGAAA
Found at i:14037692 original size:31 final size:31
Alignment explanation
Indices: 14037657--14037719 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
14037647 ATCAGTCCAC
*
14037657 ATAGTTTGTGCAATTTCCTCTCTCTTAGTAG
1 ATAGTTTATGCAATTTCCTCTCTCTTAGTAG
*
14037688 ATAGTTTATGCAATTTCTTCTCTCTTAGTAG
1 ATAGTTTATGCAATTTCCTCTCTCTTAGTAG
14037719 A
1 A
14037720 CTATTCTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.46
Consensus pattern (31 bp):
ATAGTTTATGCAATTTCCTCTCTCTTAGTAG
Found at i:14038782 original size:30 final size:30
Alignment explanation
Indices: 14038746--14038805 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
14038736 AGATAGAAAA
14038746 ATTTGACACAGAAATTTAAAGTGGTTCGGC
1 ATTTGACACAGAAATTTAAAGTGGTTCGGC
14038776 ATTTGACACAGAAATTTAAAGTGGTTCGGC
1 ATTTGACACAGAAATTTAAAGTGGTTCGGC
14038806 CCAAATTGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.30
Consensus pattern (30 bp):
ATTTGACACAGAAATTTAAAGTGGTTCGGC
Found at i:14038854 original size:57 final size:57
Alignment explanation
Indices: 14038790--14038902 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
14038780 GACACAGAAA
14038790 TTTAAAGTGGTTCGGCCCAAATTGCCTACTACACTACCATAGCTTTCCACTACTAAT
1 TTTAAAGTGGTTCGGCCCAAATTGCCTACTACACTACCATAGCTTTCCACTACTAAT
* * *
14038847 TTTAAAGTGGTTCGGCCCCAGTTGCCTACTCCACTACCATAGCTTTCCACTACTAA
1 TTTAAAGTGGTTCGGCCCAAATTGCCTACTACACTACCATAGCTTTCCACTACTAA
14038903 CGATTTTCCC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (57 bp):
TTTAAAGTGGTTCGGCCCAAATTGCCTACTACACTACCATAGCTTTCCACTACTAAT
Found at i:14041646 original size:27 final size:27
Alignment explanation
Indices: 14041615--14041792 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14041605 TGAATTGTAC
14041615 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14041642 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14041668 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14041696 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14041724 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14041751 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14041778 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14041793 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14041729 original size:82 final size:81
Alignment explanation
Indices: 14041616--14041771 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14041606 GAATTGTACA
* *
14041616 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14041680 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14041697 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14041762 TGCGAGTTGA
65 TGCGAATTGA
14041772 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14041783 original size:82 final size:81
Alignment explanation
Indices: 14041612--14041792 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14041602 GATTGAATTG
* *
14041612 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14041677 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14041693 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14041757 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14041775 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14041793 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14045667 original size:15 final size:15
Alignment explanation
Indices: 14045647--14045677 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14045637 AATTACAAAT
*
14045647 ATGTAGCTCAAAAAC
1 ATGTAGATCAAAAAC
14045662 ATGTAGATCAAAAAC
1 ATGTAGATCAAAAAC
14045677 A
1 A
14045678 CGATAACTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.16, G:0.13, T:0.19
Consensus pattern (15 bp):
ATGTAGATCAAAAAC
Found at i:14048170 original size:35 final size:35
Alignment explanation
Indices: 14048086--14048246 Score: 173
Period size: 35 Copynumber: 4.6 Consensus size: 35
14048076 AATACTCAAG
* *
14048086 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* **
14048121 G-ACAATATATCATCACATATGACTGAATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * * * *
14048155 GCTCAATATAACATCACATGT-AGTCAAATATTCAA
1 GTTCAATATATCATCACATATGA-CCAAATATACAA
* * * *
14048190 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
14048225 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
14048247 TACATACCTA
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
34 30 0.29
35 73 0.71
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGACCAAATATACAA
Found at i:14052146 original size:22 final size:22
Alignment explanation
Indices: 14052095--14052139 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
14052085 CATTAGTAAG
14052095 TCTGAATGGCATAACTAGAAAC
1 TCTGAATGGCATAACTAGAAAC
14052117 TCTGAATGGCATAACTAGAAAC
1 TCTGAATGGCATAACTAGAAAC
14052139 T
1 T
14052140 TATAATGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (22 bp):
TCTGAATGGCATAACTAGAAAC
Found at i:14055744 original size:35 final size:35
Alignment explanation
Indices: 14055674--14055853 Score: 200
Period size: 35 Copynumber: 5.1 Consensus size: 35
14055664 TACTTACTTG
* * *
14055674 TATGGCCGAATACT-CAAGGTTCATTATATCTTCACA
1 TATGGCCAAATA-TACAA-GTTCAATATATCATCACA
*
14055710 TATGGCCAAATATACAAGTACAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * *
14055745 TATGACCGAATATACAAGCTCAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * *
14055780 TGTAGTCAAATATTCAAGTTTAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
*
14055815 TGTGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
14055850 TATG
1 TATG
14055854 TACATACCTA
Statistics
Matches: 120, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
35 106 0.88
36 14 0.12
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:14060699 original size:20 final size:20
Alignment explanation
Indices: 14060662--14060699 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14060652 ATTGAATATG
*
14060662 AATTATATTTAATTGATTTA
1 AATTATATTTAATAGATTTA
14060682 AATT-TATTTGAATAGATT
1 AATTATATTT-AATAGATT
14060700 CGGTTAGACC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (20 bp):
AATTATATTTAATAGATTTA
Found at i:14061019 original size:25 final size:25
Alignment explanation
Indices: 14060972--14061041 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
14060962 TTTAAGCTAT
*
14060972 TATGAGCTTACCGA-TACTCAGCTCA
1 TATGAGCTTACC-ATTATTCAGCTCA
* *
14060997 TATGAGCTTACCATTATTTAGCTTA
1 TATGAGCTTACCATTATTCAGCTCA
*
14061022 GATGAGCTTACCATTATTCA
1 TATGAGCTTACCATTATTCA
14061042 ACTCGGAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (25 bp):
TATGAGCTTACCATTATTCAGCTCA
Found at i:14066938 original size:27 final size:26
Alignment explanation
Indices: 14066908--14066962 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
14066898 AGTTAATAAA
* **
14066908 TTCTCTTTGAGTTTTCTTTTTAAGAAT
1 TTCTC-TTGAGTTTCCTTTAGAAGAAT
14066935 TTCTCTTGAGTTTCCTTTAGAAGAAT
1 TTCTCTTGAGTTTCCTTTAGAAGAAT
14066961 TT
1 TT
14066963 TAACAATCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.55
Consensus pattern (26 bp):
TTCTCTTGAGTTTCCTTTAGAAGAAT
Found at i:14067840 original size:33 final size:33
Alignment explanation
Indices: 14067803--14067869 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
14067793 GATACATTTG
14067803 AGGCCAATTTGACTAAGTGTCAAACGAAACTAC
1 AGGCCAATTTGACTAAGTGTCAAACGAAACTAC
* * *
14067836 AGGCCAATTTGACTAAGTTTCGAACGGAACTAC
1 AGGCCAATTTGACTAAGTGTCAAACGAAACTAC
14067869 A
1 A
14067870 AGAGAACATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (33 bp):
AGGCCAATTTGACTAAGTGTCAAACGAAACTAC
Found at i:14070759 original size:20 final size:21
Alignment explanation
Indices: 14070734--14070773 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14070724 TTCTTGAAAT
14070734 AAGGC-ATACGCCCGTGTGGA
1 AAGGCAATACGCCCGTGTGGA
14070754 AAGGCAATACGCCCGTGTGG
1 AAGGCAATACGCCCGTGTGG
14070774 TCGTTATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (21 bp):
AAGGCAATACGCCCGTGTGGA
Found at i:14082585 original size:66 final size:69
Alignment explanation
Indices: 14082417--14082585 Score: 163
Period size: 72 Copynumber: 2.5 Consensus size: 69
14082407 AATATAGATG
* * * *
14082417 AAATGTAGCTAGGTCACATGTGTGATA-C--GGGATGTATC-CCATGTAGACAAGAGAGCTACGA
1 AAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAGGA-CACCATGTAGACAAGAGAGCTAC-A
14082478 GAGAGGGT
64 GAGA--GT
* * *
14082486 AAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTAC-GA
1 AAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAGGACACCATGTAGACAAGAGAGCTACAGA
14082550 GA-T
66 GAGT
* * *
14082553 AAAT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 AAATGTAGCTAGGTCACATGGGTGATACCAAGTG
14082586 TTCACCATGT
Statistics
Matches: 85, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
66 23 0.27
67 5 0.06
69 25 0.29
70 5 0.06
71 1 0.01
72 26 0.31
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.22
Consensus pattern (69 bp):
AAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAGGACACCATGTAGACAAGAGAGCTACAGA
GAGT
Found at i:14102215 original size:49 final size:50
Alignment explanation
Indices: 14102143--14102273 Score: 201
Period size: 49 Copynumber: 2.6 Consensus size: 50
14102133 TGTTTATAGT
*
14102143 TTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTGTACT-AAGG
1 TTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTGTACTAAAGA
* *
14102192 TTGAAAAACCTTATTCTCATCAATGTCAAATAGATGAAGTGTAGTAAAGA
1 TTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTGTACTAAAGA
* * *
14102242 TTGAAAAACCTTATTTTAATCTATGTAAAATA
1 TTGAAAAACCTTATTCTAATCAATGTCAAATA
14102274 AAAGTAGTTC
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 43 0.58
50 31 0.42
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (50 bp):
TTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTGTACTAAAGA
Found at i:14104764 original size:29 final size:28
Alignment explanation
Indices: 14104732--14104797 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
14104722 AGATGAAGCT
* *
14104732 ATCCCTTTCATTTTTCGATGGTCGTCACC
1 ATCCCTTTCATTGTT-GATAGTCGTCACC
* *
14104761 ATCCATTTTTATTGTTGATAGTCGTCACC
1 ATCC-CTTTCATTGTTGATAGTCGTCACC
14104790 ATCCCTTT
1 ATCCCTTT
14104798 TTATAATTCG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 3 0.10
29 20 0.65
30 8 0.26
ACGTcount: A:0.17, C:0.27, G:0.12, T:0.44
Consensus pattern (28 bp):
ATCCCTTTCATTGTTGATAGTCGTCACC
Found at i:14104831 original size:118 final size:119
Alignment explanation
Indices: 14104586--14104810 Score: 319
Period size: 118 Copynumber: 1.9 Consensus size: 119
14104576 TTGTCCCAAC
* * * *
14104586 CCTTTTCATAGCTCGATAGCCGAAGCTATCTCTTATCATTATTTGATGGTCATCACCATCCCTTT
1 CCTTTTCATAACTCGATAGACGAAGCTATCCCTTATCATTATTTGATGGTCATCACCATCCATTT
* * *
14104651 TTATTGTTCATGGTCGTCACTATCCCTTTTCATAATTTGATAACCAAAACTATA
66 TTATTGTTCATAGTCGTCACCATCCCTTTTCATAATTCGATAACCAAAACTATA
* * *
14104705 CCTTTTCATAATTCGATAGATGAAGCTATCCCTT-TCATT-TTTCGATGGTCGTCACCATCCATT
1 CCTTTTCATAACTCGATAGACGAAGCTATCCCTTATCATTATTT-GATGGTCATCACCATCCATT
* *
14104768 TTTATTGTTGATAGTCGTCACCATCCCTTTTTATAATTCGATA
65 TTTATTGTTCATAGTCGTCACCATCCCTTTTCATAATTCGATA
14104811 GCTGAGGCTA
Statistics
Matches: 93, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
117 3 0.03
118 61 0.66
119 29 0.31
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (119 bp):
CCTTTTCATAACTCGATAGACGAAGCTATCCCTTATCATTATTTGATGGTCATCACCATCCATTT
TTATTGTTCATAGTCGTCACCATCCCTTTTCATAATTCGATAACCAAAACTATA
Found at i:14109915 original size:19 final size:20
Alignment explanation
Indices: 14109877--14109917 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
14109867 TTTTTTATGT
14109877 AAGTATCGATAAAATAGACCA
1 AAGTATCGAT-AAATAGACCA
*
14109898 AAGTATCGAT-ACTAGACCA
1 AAGTATCGATAAATAGACCA
14109917 A
1 A
14109918 TTGAAGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
21 10 0.53
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.20
Consensus pattern (20 bp):
AAGTATCGATAAATAGACCA
Found at i:14125830 original size:42 final size:42
Alignment explanation
Indices: 14125782--14125870 Score: 169
Period size: 42 Copynumber: 2.1 Consensus size: 42
14125772 TAACGTGACA
14125782 GTGTGTCACACACGGCTAAGACACACTCCCGTGTCTCTGCCC
1 GTGTGTCACACACGGCTAAGACACACTCCCGTGTCTCTGCCC
*
14125824 GTGTGTCACACACGGCTGAGACACACTCCCGTGTCTCTGCCC
1 GTGTGTCACACACGGCTAAGACACACTCCCGTGTCTCTGCCC
14125866 GTGTG
1 GTGTG
14125871 GACAAAAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.17, C:0.36, G:0.25, T:0.22
Consensus pattern (42 bp):
GTGTGTCACACACGGCTAAGACACACTCCCGTGTCTCTGCCC
Found at i:14129955 original size:39 final size:40
Alignment explanation
Indices: 14129869--14130060 Score: 148
Period size: 39 Copynumber: 4.9 Consensus size: 40
14129859 ACTTGAAACC
** * * *
14129869 AATTACCAGCAC-AAGCCTGCGGGAATTTAAACTCGG-TAT
1 AATT-CCAGCACGAAGCCTGCGGGACCTTAAGCCCGGACAT
* * *
14129908 AATACCAGCTCGAAGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGACAT
* * * *
14129947 ATTTCCAGCACGTAGCCTGC-GGACCTTAAGTCCGGATAT
1 AATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGACAT
* * *
14129986 AATTCCAGCAC-ATAGCCTGC-GGACCCTAAGTCCGGATAT
1 AATTCCAGCACGA-AGCCTGCGGGACCTTAAGCCCGGACAT
* *
14130025 AATTCCAGCAC-ATAGCCTGC-GGACCCTAAGTCCGGA
1 AATTCCAGCACGA-AGCCTGCGGGACCTTAAGCCCGGA
14130061 TATACATCAC
Statistics
Matches: 132, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
38 16 0.12
39 116 0.88
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
AATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGACAT
Found at i:14129987 original size:78 final size:78
Alignment explanation
Indices: 14129905--14130064 Score: 207
Period size: 78 Copynumber: 2.1 Consensus size: 78
14129895 TTAAACTCGG
* * * * *
14129905 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
14129968 GACCTTAAGTCCGGA
64 GACCCTAAGTCCGGA
* * *
14129983 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
14130048 CCCTAAGTCCGGA
66 CCCTAAGTCCGGA
14130061 TATA
1 TATA
14130065 CATCACTGAA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
77 4 0.06
78 67 0.94
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCCGGA
Found at i:14130061 original size:39 final size:39
Alignment explanation
Indices: 14129939--14130064 Score: 216
Period size: 39 Copynumber: 3.2 Consensus size: 39
14129929 GGACTTTAGC
* * * *
14129939 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
14129978 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
14130017 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
14130056 CCGGATATA
1 CCGGATATA
14130065 CATCACTGAA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:14135391 original size:39 final size:39
Alignment explanation
Indices: 14135348--14135473 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
14135338 GGACTTTAGC
* * * * * *
14135348 CCGGACATATTTCCAGCACGTAGCCTACAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
14135387 CCGGATATAATTCCAGCACATAGCATGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
14135426 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
14135465 CCAGATATA
1 CCGGATATA
14135474 CATCACTGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:14136019 original size:21 final size:20
Alignment explanation
Indices: 14135980--14136019 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14135970 TTTGTTCTTC
*
14135980 TTTTCTTATTTCAATTAATA
1 TTTTCTTATTTCAAATAATA
*
14136000 TTTTTTTATTTCAAAATAAT
1 TTTTCTTATTTC-AAATAAT
14136020 GCAAATTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTCTTATTTCAAATAATA
Found at i:14138308 original size:20 final size:20
Alignment explanation
Indices: 14138268--14138309 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14138258 ATTACTTCTT
* *
14138268 AAAAGTACTTTTGGGACAAA
1 AAAAATACTTTTGAGACAAA
*
14138288 AAAAATACTTTTGAGATAAA
1 AAAAATACTTTTGAGACAAA
14138308 AA
1 AA
14138310 TATTGTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.26
Consensus pattern (20 bp):
AAAAATACTTTTGAGACAAA
Found at i:14138392 original size:20 final size:19
Alignment explanation
Indices: 14138367--14138417 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
14138357 AAAAAAAATA
14138367 TTTTGCAAAAGTACTTTTTT
1 TTTTGCAAAAGTAC-TTTTT
**
14138387 TTTTGCAAAACCACTTTTT
1 TTTTGCAAAAGTACTTTTT
14138406 TTTT-CAAAAGTA
1 TTTTGCAAAAGTA
14138418 GAAGTAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 6 0.22
19 9 0.33
20 12 0.44
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (19 bp):
TTTTGCAAAAGTACTTTTT
Found at i:14140065 original size:14 final size:14
Alignment explanation
Indices: 14140036--14140072 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
14140026 TTATATACTT
*
14140036 ATATTATCTTAAATA
1 ATATTAT-TCAAATA
14140051 ATATTATTCAAATA
1 ATATTATTCAAATA
14140065 ATATTATT
1 ATATTATT
14140073 ACACGTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (14 bp):
ATATTATTCAAATA
Found at i:14142266 original size:16 final size:16
Alignment explanation
Indices: 14142242--14142276 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
14142232 GGTAGTAAAT
14142242 TATGGTATAAAATTTA
1 TATGGTATAAAATTTA
*
14142258 TATGTTATAAAATTTA
1 TATGGTATAAAATTTA
14142274 TAT
1 TAT
14142277 TTTAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (16 bp):
TATGGTATAAAATTTA
Found at i:14142315 original size:22 final size:22
Alignment explanation
Indices: 14142252--14142315 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 22
14142242 TATGGTATAA
*
14142252 AATTTAT-ATGTTATAAAATTTAT
1 AATTTATAAT-TTAT-AAATGTAT
*
14142275 -ATTT-TAATTATTTACAATGTAT
1 AATTTATAATT-TATA-AATGTAT
14142297 AATTTATAATTTATAAATG
1 AATTTATAATTTATAAATG
14142316 AAAACAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 11
0.70 0.06 0.23
Matches are distributed among these distances:
21 3 0.09
22 18 0.55
23 7 0.21
24 5 0.15
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
AATTTATAATTTATAAATGTAT
Found at i:14150756 original size:4 final size:4
Alignment explanation
Indices: 14150749--14150780 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
14150739 CATGCATTCG
14150749 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
14150781 CGCATGCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:14153879 original size:20 final size:20
Alignment explanation
Indices: 14153828--14153880 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
14153818 AATTTCTTTC
14153828 AATTTTATA-ATTTTTATAA
1 AATTTTATATATTTTTATAA
* * *
14153847 AATTATATGTATTTTTCTAA
1 AATTTTATATATTTTTATAA
*
14153867 ATTTTTATATATTT
1 AATTTTATATATTT
14153881 ATTTTCATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 7 0.26
20 20 0.74
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
AATTTTATATATTTTTATAA
Found at i:14156084 original size:29 final size:31
Alignment explanation
Indices: 14156026--14156084 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
14156016 AAATTTCATG
* *
14156026 TATATATTTGAATCACAATCAAAGTTTAATA
1 TATATAATTGAATCACAATCAAAGTATAATA
*
14156057 TATATAATTGCATCA-AATCAAAG-ATAAT
1 TATATAATTGAATCACAATCAAAGTATAAT
14156085 GAATTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 8 0.32
31 13 0.52
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.36
Consensus pattern (31 bp):
TATATAATTGAATCACAATCAAAGTATAATA
Found at i:14156156 original size:102 final size:102
Alignment explanation
Indices: 14156045--14156259 Score: 421
Period size: 102 Copynumber: 2.1 Consensus size: 102
14156035 GAATCACAAT
*
14156045 CAAAGTTTAATATATATAATTGCATCAAATCAAAGATAATGAATTAAAATTCATGTAGTATAACT
1 CAAAGTTTAATATATATAATTACATCAAATCAAAGATAATGAATTAAAATTCATGTAGTATAACT
14156110 TCGACTATTCCAATATTTTCTTTGATAAATGCTTCTC
66 TCGACTATTCCAATATTTTCTTTGATAAATGCTTCTC
14156147 CAAAGTTTAATATATATAATTACATCAAATCAAAGATAATGAATTAAAATTCATGTAGTATAACT
1 CAAAGTTTAATATATATAATTACATCAAATCAAAGATAATGAATTAAAATTCATGTAGTATAACT
14156212 TCGACTATTCCAATATTTTCTTTGATAAATGCTTCTC
66 TCGACTATTCCAATATTTTCTTTGATAAATGCTTCTC
14156249 CAAAGTTTAAT
1 CAAAGTTTAAT
14156260 TGAATCTACG
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 112 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.38
Consensus pattern (102 bp):
CAAAGTTTAATATATATAATTACATCAAATCAAAGATAATGAATTAAAATTCATGTAGTATAACT
TCGACTATTCCAATATTTTCTTTGATAAATGCTTCTC
Found at i:14160884 original size:25 final size:25
Alignment explanation
Indices: 14160856--14160904 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14160846 ATATGTATAT
14160856 ATATATTT-TATATAATTTATTTTAA
1 ATAT-TTTGTATATAATTTATTTTAA
*
14160881 ATATTTTGTATATTATTTATTTTA
1 ATATTTTGTATATAATTTATTTTA
14160905 CTTTAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
ATATTTTGTATATAATTTATTTTAA
Found at i:14160972 original size:12 final size:12
Alignment explanation
Indices: 14160936--14161005 Score: 65
Period size: 12 Copynumber: 6.0 Consensus size: 12
14160926 AAAAAAATAG
*
14160936 TTATTTTATTATT
1 TTATTATATTA-T
* *
14160949 TTTTTGTATTAT
1 TTATTATATTAT
14160961 TTATTATATTAT
1 TTATTATATTAT
*
14160973 TTA-TATTTTA-
1 TTATTATATTAT
*
14160983 TT-GTATATTAT
1 TTATTATATTAT
14160994 TTATTATATTAT
1 TTATTATATTAT
14161006 GTATAATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
10 8 0.17
11 8 0.17
12 22 0.47
13 9 0.19
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (12 bp):
TTATTATATTAT
Found at i:14160974 original size:33 final size:34
Alignment explanation
Indices: 14160936--14161005 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
14160926 AAAAAAATAG
*
14160936 TTATTTTATTATTTT-TT-TGTATTATTTATTATA
1 TTATTTTA-TATTTTATTGTATATTATTTATTATA
14160969 TTA-TTTATATTTTATTGTATATTATTTATTATA
1 TTATTTTATATTTTATTGTATATTATTTATTATA
14161002 TTAT
1 TTAT
14161006 GTATAATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
31 6 0.18
32 6 0.18
33 21 0.64
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (34 bp):
TTATTTTATATTTTATTGTATATTATTTATTATA
Found at i:14161014 original size:19 final size:19
Alignment explanation
Indices: 14160953--14161014 Score: 53
Period size: 19 Copynumber: 3.5 Consensus size: 19
14160943 ATTATTTTTT
*
14160953 TGTATTATTTATTATATTA
1 TGTATAATTTATTATATTA
* * *
14160972 TTTATATTTTATTGTA-TA
1 TGTATAATTTATTATATTA
14160990 --T-T-ATTTATTATATTA
1 TGTATAATTTATTATATTA
14161005 TGTATAATTT
1 TGTATAATTT
14161015 TAAAATTTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
14 8 0.25
15 3 0.09
16 1 0.03
17 1 0.03
18 3 0.09
19 16 0.50
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (19 bp):
TGTATAATTTATTATATTA
Found at i:14161069 original size:15 final size:15
Alignment explanation
Indices: 14161030--14161070 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
14161020 TTTGTGAATT
14161030 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
14161045 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
14161058 ATTATTAAATATT
1 ATTATTAAATATT
14161071 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:14161408 original size:18 final size:18
Alignment explanation
Indices: 14161385--14161419 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14161375 ATCTCATAAA
14161385 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
14161403 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
14161420 ATATATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:14161573 original size:67 final size:63
Alignment explanation
Indices: 14161490--14161641 Score: 160
Period size: 67 Copynumber: 2.3 Consensus size: 63
14161480 TTATTGTACA
* ** * *
14161490 TATATTATGTAATTTATATTGTTATATTCATTGTTTTCTATTTTGTATTTTGCATGAAATGTTAA
1 TATATTATGTAATTTATATTGTCAT-TT-ATCATTTT-TATATTATA-TTTGCATGAAATGTTAA
*
14161555 TG
62 AG
* *
14161557 TATATTATGTAATTTATGTCGTCATTTATCATTTTTATATTATATTTGCATGAAATGTTAAAG
1 TATATTATGTAATTTATATTGTCATTTATCATTTTTATATTATATTTGCATGAAATGTTAAAG
* *
14161620 TATGTATCATGTAGTTTATATT
1 TA--TATTATGTAATTTATATT
14161642 ATTTAGTATT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
63 20 0.28
64 7 0.10
65 20 0.28
66 2 0.03
67 22 0.31
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.54
Consensus pattern (63 bp):
TATATTATGTAATTTATATTGTCATTTATCATTTTTATATTATATTTGCATGAAATGTTAAAG
Found at i:14173402 original size:90 final size:90
Alignment explanation
Indices: 14173125--14173668 Score: 772
Period size: 90 Copynumber: 6.1 Consensus size: 90
14173115 TAAACAGGGA
* * * **
14173125 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCATATCGAA-AGTGATAGATTTGAAG
1 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGAAGA-TGACAGATTTGGCG
14173189 TCTCTGTATTAGACGGGGAGCAGATC
65 TCTCTGTATTAGACGGGGAGCAGATC
* * * *
14173215 GAAGATAGCATATCTGACATTCATGTGTTTACATCGAAGCAAATTGAAGATGACAG-TTTGGCAT
1 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGT
*
14173279 CTCTGTATTAGACGGGAAGCAGATC
66 CTCTGTATTAGACGGGGAGCAGATC
* *
14173304 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGTAGATC-ACAGATGACAGGTTTGGCG
1 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGA-AGATGACAGATTTGGCG
14173368 TCTCTGTATTAGACGGGGAGCAGATC
65 TCTCTGTATTAGACGGGGAGCAGATC
* * * * * *
14173394 AAAGATAGCAGATTTGACATTCGTGTGTTTACATCGAAGTAGATCGAAGATGATAGATTTGGGGT
1 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGT
* * * * *
14173459 TTCTGTATCAGACAGGCAGTAGATC
66 CTCTGTATTAGACGGGGAGCAGATC
* *
14173484 GAAGGTAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGAAGATGATAGATTTGGCGT
1 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGT
*
14173549 CTTTGTATTAGACGGGGAGCAGATC
66 CTCTGTATTAGACGGGGAGCAGATC
* *
14173574 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAGGATGACAGATTTGGCGT
1 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGT
*
14173639 CTCTGTATTAGGC-GGGAGCAGATC
66 CTCTGTATTAGACGGGGAGCAGATC
*
14173663 AAAGAT
1 GAAGAT
14173669 TTCAGCATGG
Statistics
Matches: 405, Mismatches: 45, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
88 1 0.00
89 95 0.23
90 307 0.76
91 2 0.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (90 bp):
GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGT
CTCTGTATTAGACGGGGAGCAGATC
Found at i:14173453 original size:45 final size:44
Alignment explanation
Indices: 14173125--14173634 Score: 246
Period size: 45 Copynumber: 11.4 Consensus size: 44
14173115 TAAACAGGGA
* *
14173125 GAAGAT-AGCAGATCTGACATTCGTGTGTTTACATCGAAGCATATC
1 GAAGATGA-CAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* * * * *
14173170 GAA-AGTGATAGATTTGA-AGTCTCTGTATTAGA-CGGGGAGCAGATC
1 GAAGA-TGACAGATTTGACATTCTGTGT-TTACATC--GAAGCAGATC
* * * *
14173215 GAAGAT-AGCATATCTGACATTCATGTGTTTACATCGAAGCAAATT
1 GAAGATGA-CAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* * *
14173260 GAAGATGACAG-TTTGGCATCTCTGT-ATTAGA-CGGGAAGCAGATC
1 GAAGATGACAGATTTGACAT-TCTGTGTTTACATC--GAAGCAGATC
* *
14173304 GAAGAT-AGCAGATCTGACATTCATGTGTTTACATCGAAGTAGATC
1 GAAGATGA-CAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* * * * * *
14173349 -ACAGATGACAGGTTTGGCGTCTCTGT-ATTAGA-CGGGGAGCAGATC
1 GA-AGATGACAGATTTGACAT-TCTGTGTTTACATC--GAAGCAGATC
* *
14173394 AAAGAT-AGCAGATTTGACATTCGTGTGTTTACATCGAAGTAGATC
1 GAAGATGA-CAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* *** * ** * * *
14173439 GAAGATGATAGATTTGGGGTTTCTGTATCAGACA-GGCAGTAGATC
1 GAAGATGACAGATTT-GACATTCTGTGT-TTACATCGAAGCAGATC
* *
14173484 GAAGGT-AGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATC
1 GAAGATGA-CAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* * * * * *
14173529 GAAGATGATAGATTTGGC-GTCTTTGTATTAGA-CGGGGAGCAGATC
1 GAAGATGACAGATTTGACATTCTGTGT-TTACATC--GAAGCAGATC
*
14173574 GAAGAT-AGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATC
1 GAAGATGA-CAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
*
14173619 GAGGATGACAGATTTG
1 GAAGATGACAGATTTG
14173635 GCGTCTCTGT
Statistics
Matches: 339, Mismatches: 82, Indels: 88
0.67 0.16 0.17
Matches are distributed among these distances:
42 1 0.00
43 16 0.05
44 60 0.18
45 212 0.63
46 38 0.11
47 12 0.04
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
GAAGATGACAGATTTGACATTCTGTGTTTACATCGAAGCAGATC
Found at i:14175269 original size:25 final size:24
Alignment explanation
Indices: 14175228--14175275 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
14175218 CTTTATATAT
14175228 ATATTTTTATATAATTTATTTTAA
1 ATATTTTTATATAATTTATTTTAA
*
14175252 ATATTTTGTATATTATTTATTTTA
1 ATATTTT-TATATAATTTATTTTA
14175276 CTTTAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
ATATTTTTATATAATTTATTTTAA
Found at i:14175354 original size:10 final size:10
Alignment explanation
Indices: 14175336--14175375 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
14175326 CTACTATTTA
14175336 TTATATTATT
1 TTATATTATT
*
14175346 TTATTTTATT
1 TTATATTATT
*
14175356 GTATATTATT
1 TTATATTATT
14175366 TATATATTAT
1 T-TATATTAT
14175376 GTATAATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (10 bp):
TTATATTATT
Found at i:14175355 original size:18 final size:20
Alignment explanation
Indices: 14175332--14175380 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
14175322 TTTTCTACTA
14175332 TTTAT-TATATTATTT-TAT
1 TTTATGTATATTATTTATAT
14175350 TTTATTGTATATTATTTATAT
1 TTTA-TGTATATTATTTATAT
*
14175371 ATTATGTATA
1 TTTATGTATA
14175381 ATTTAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 4 0.15
19 1 0.04
20 16 0.59
21 6 0.22
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
TTTATGTATATTATTTATAT
Found at i:14175438 original size:15 final size:15
Alignment explanation
Indices: 14175399--14175439 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
14175389 TTTGTGAATT
14175399 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
14175414 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
14175427 ATTATTAAATATT
1 ATTATTAAATATT
14175440 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:14175773 original size:18 final size:18
Alignment explanation
Indices: 14175750--14175784 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14175740 ATCTCATAAA
14175750 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
14175768 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
14175785 ATATATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:14177982 original size:423 final size:423
Alignment explanation
Indices: 14177182--14178437 Score: 1992
Period size: 423 Copynumber: 3.0 Consensus size: 423
14177172 ATATGTTAAA
* * * * *
14177182 AACTTCAAATGCACGTCTTCCTCTTTGGTCGGGAGTTCCAATGTTTCGGATAATGATCCTGTTAA
1 AACTCCAAATCCACGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCCTGTTAA
* * * * * * *
14177247 TTCTGGTTTGTATCAACTCAATGTTAATAGGGCTGATTTGGGAAGAGCATATGATGAGAGTGGTG
66 TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
* * * *
14177312 ATTATAATCGATACTTAAGTGAATCCAATACTAAGAGTGAAAAGTCAAAGTTAAACATTTATTTG
131 GTTATAATCGATACTTAAGTGAATGCAATACTAAGAGTGAAAAGTCATAGTTGAACATTTATTTG
** * * * * *
14177377 GAAGAATTAGAGCTTGAGTTAAATAGCCAAATAGATGTATTGGATTACTGGAGCAAAACTTCAAT
196 GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
* * * * * *
14177442 TCAATATCATGAGCTTTCATTATTGGCTCGTTATCTTTTAGTAATTCCAATATCGACTGTAGCTT
261 TTAATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
* * *
14177507 TCGAGTTGGCTTTTAGCAT-GAGGAAGAAAGCTATCACAACTTCGAAGAGTTCACATAAACCAAA
326 TCAAGTTGGCTTTTAGCATGGA-GAAGAAAGTTATCACAACTTTGAAGAGTTCACATAAACCAAA
14177571 ACTGGTTCAAGTTGTTGTTTGCTTTGATGACTGG
390 ACTGGTTCAAGTTGTTGTTTGCTTTGATGACTGG
* *
14177605 AACTCCAAATCCATGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCATGTTAA
1 AACTCCAAATCCACGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCCTGTTAA
14177670 TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
66 TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
* *
14177735 GTTATAATCAATACTTAAGTGAATGCAATACTAAAAGTGAAAAGTCATAGTTGAACATTTATTTG
131 GTTATAATCGATACTTAAGTGAATGCAATACTAAGAGTGAAAAGTCATAGTTGAACATTTATTTG
14177800 GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
196 GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
*
14177865 TTGATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
261 TTAATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
* *
14177930 TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACACCTTTGAAGAGTTCACATAAATCAAAA
326 TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACAACTTTGAAGAGTTCACATAAACCAAAA
* * * *
14177995 TTAGTTCAATTTGTTGCTTGCTTTGATGACTGG
391 CTGGTTCAAGTTGTTGTTTGCTTTGATGACTGG
* *
14178028 AACTCCAAATCCACGTCTTCCTATTTGGTCAGAAGTTCCAATGTTTCAAATAATGATCCTGTTAA
1 AACTCCAAATCCACGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCCTGTTAA
*
14178093 TTCTTGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
66 TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
* *
14178158 GTTATAATCGATACTTAAGTGAATGCAATACTAAGAGTAAAAAGTCATAGTTGAGCATTTATTTG
131 GTTATAATCGATACTTAAGTGAATGCAATACTAAGAGTGAAAAGTCATAGTTGAACATTTATTTG
* *
14178223 GAGGAACCAAAGCTTAAGTTGAATAACCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
196 GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
* *
14178288 TTTATAGCATGAGCTTTCATTATTGGCTCATGATCGTTTGGCAATTCCAATATCGACTGTAGCTT
261 TTAATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
*
14178353 TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACATCTTTGAAGAGTTCACATAAACCAAAA
326 TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACAACTTTGAAGAGTTCACATAAACCAAAA
* **
14178418 CTGGTTTAAGCCGTTGTTTG
391 CTGGTTCAAGTTGTTGTTTG
14178438 TTTTTTGGCT
Statistics
Matches: 767, Mismatches: 65, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
423 765 1.00
424 2 0.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.33
Consensus pattern (423 bp):
AACTCCAAATCCACGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCCTGTTAA
TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
GTTATAATCGATACTTAAGTGAATGCAATACTAAGAGTGAAAAGTCATAGTTGAACATTTATTTG
GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
TTAATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACAACTTTGAAGAGTTCACATAAACCAAAA
CTGGTTCAAGTTGTTGTTTGCTTTGATGACTGG
Found at i:14179905 original size:18 final size:18
Alignment explanation
Indices: 14179874--14179919 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
14179864 AATATGATGA
14179874 AAAAG-AAA-ATGAAGAG
1 AAAAGAAAAGATGAAGAG
14179890 AAAAGAAAAGATGAAGAG
1 AAAAGAAAAGATGAAGAG
14179908 AAAGAGAAAAGA
1 AAA-AGAAAAGA
14179920 GGGAGGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.19
17 3 0.11
18 11 0.41
19 8 0.30
ACGTcount: A:0.70, C:0.00, G:0.26, T:0.04
Consensus pattern (18 bp):
AAAAGAAAAGATGAAGAG
Found at i:14180549 original size:19 final size:19
Alignment explanation
Indices: 14180525--14180561 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14180515 AATTAATTCA
14180525 ATAATTAATCATA-ATTAAG
1 ATAATTAAT-ATAGATTAAG
14180544 ATAATTAATATAGATTAA
1 ATAATTAATATAGATTAA
14180562 AACCAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (19 bp):
ATAATTAATATAGATTAAG
Found at i:14182442 original size:30 final size:30
Alignment explanation
Indices: 14182406--14182468 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
14182396 ACTTATTTTA
14182406 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
14182436 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
14182466 TTG
1 TTG
14182469 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:14182621 original size:12 final size:12
Alignment explanation
Indices: 14182591--14182623 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
14182581 TATATATTTT
14182591 AAAATT-ATATA
1 AAAATTAATATA
14182602 AAAA-TAATATA
1 AAAATTAATATA
14182613 AAAATTAATAT
1 AAAATTAATAT
14182624 GGGTGGGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:14183809 original size:16 final size:16
Alignment explanation
Indices: 14183788--14183818 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14183778 CATGTTAGAG
14183788 CACATAAATTTGAAAC
1 CACATAAATTTGAAAC
*
14183804 CACATATATTTGAAA
1 CACATAAATTTGAAA
14183819 AAGAATTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.29
Consensus pattern (16 bp):
CACATAAATTTGAAAC
Found at i:14185463 original size:16 final size:17
Alignment explanation
Indices: 14185431--14185463 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14185421 TTTAATTCAA
*
14185431 TCGATTTGTATTGATTC
1 TCGATTTGTACTGATTC
14185448 TCGATTT-TACTGATTC
1 TCGATTTGTACTGATTC
14185464 AAAATCACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.52
Consensus pattern (17 bp):
TCGATTTGTACTGATTC
Found at i:14188248 original size:2 final size:2
Alignment explanation
Indices: 14188241--14188276 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
14188231 CACATCAAAG
*
14188241 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14188277 TGTTCTACCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:14190565 original size:32 final size:32
Alignment explanation
Indices: 14190519--14190583 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
14190509 AATGTACTGA
14190519 AAGAATTGGTTTTGATGTGGAACACTAGTCTT
1 AAGAATTGGTTTTGATGTGGAACACTAGTCTT
*
14190551 AAGAGTTGGTTTTGATGTGGAACACTAGTCTT
1 AAGAATTGGTTTTGATGTGGAACACTAGTCTT
14190583 A
1 A
14190584 GTTACTAGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.37
Consensus pattern (32 bp):
AAGAATTGGTTTTGATGTGGAACACTAGTCTT
Found at i:14196643 original size:26 final size:26
Alignment explanation
Indices: 14196599--14196664 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 26
14196589 TTATGTATTT
*
14196599 TATATAAAATTAAATT-AA-ATTAAA
1 TATATAATATTAAATTAAATATTAAA
14196623 TATATAATATTATAATGTAAATATTAAA
1 TATATAATATTA-AAT-TAAATATTAAA
14196651 -ATAT-ATATTAAATT
1 TATATAATATTAAATT
14196665 CTTTATGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
24 12 0.32
25 6 0.16
26 7 0.19
27 6 0.16
28 6 0.16
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
TATATAATATTAAATTAAATATTAAA
Found at i:14196742 original size:18 final size:19
Alignment explanation
Indices: 14196709--14196749 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
14196699 AAAAAATAAG
*
14196709 AAAAGAAAATATTTAATTA
1 AAAAGAAAATAATTAATTA
14196728 AAAAGAAAA-AATTAATTA
1 AAAAGAAAATAATTAATTA
14196746 AAAA
1 AAAA
14196750 TAATATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (19 bp):
AAAAGAAAATAATTAATTA
Found at i:14214314 original size:316 final size:316
Alignment explanation
Indices: 14213741--14214372 Score: 1237
Period size: 316 Copynumber: 2.0 Consensus size: 316
14213731 TTGTGAGTTG
*
14213741 AGGATTTTGCTTGAGGACAAGAAAACGTTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
1 AGGATTTTGCTTGAGGACAAGAAAACGCTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
* *
14213806 ATATTTTTATCCCATGCTTAGCACATTTATGGATGATTTCTCTTTAGATTTGGTGAATTCGATGC
66 ATATATTTATCCCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGAATTCGATGC
14213871 ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
131 ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
14213936 GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
196 GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
14214001 AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGCACGACTTACACGGGTAGAC
261 AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGCACGACTTACACGGGTAGAC
14214057 AGGATTTTGCTTGAGGACAAGAAAACGCTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
1 AGGATTTTGCTTGAGGACAAGAAAACGCTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
14214122 ATATATTTATCCCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGAATTCGATGC
66 ATATATTTATCCCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGAATTCGATGC
14214187 ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
131 ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
14214252 GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
196 GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
14214317 AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGCACGACTTACACGGGTAGAC
261 AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGCACGACTTACACGGGTAGAC
14214373 CACATGCTCG
Statistics
Matches: 313, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
316 313 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (316 bp):
AGGATTTTGCTTGAGGACAAGAAAACGCTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
ATATATTTATCCCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGAATTCGATGC
ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGCACGACTTACACGGGTAGAC
Found at i:14219870 original size:48 final size:48
Alignment explanation
Indices: 14219805--14220097 Score: 514
Period size: 48 Copynumber: 6.1 Consensus size: 48
14219795 GCTGAAATTG
* *
14219805 ATGTATAAGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
14219853 ATGTATGAGATATGTATATGTGGTAAGGCCGAATGGCTAATGTTAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
14219901 ATGTATGAGATAAGTATATGTGGTAAGGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
14219949 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
14219997 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
14220045 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
14220093 ATGTA
1 ATGTA
14220098 GGCGATGTGT
Statistics
Matches: 236, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 236 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:14220351 original size:37 final size:37
Alignment explanation
Indices: 14220247--14220351 Score: 165
Period size: 37 Copynumber: 2.8 Consensus size: 37
14220237 ATATATTCCA
*
14220247 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
* *
14220284 GGTAAGACTCGATGACTACGTGTGAAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
* *
14220321 GGTAAGACCCGATAACTTCGTGTGGAGATTT
1 GGTAAGACCCGATGACTACGTGTGGAGATTT
14220352 CATCTGAGCT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
Found at i:14223097 original size:43 final size:43
Alignment explanation
Indices: 14222932--14223098 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
14222922 CATAAGCTCG
* * * * *
14222932 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* * * * * * *
14222973 TATCGATACCATTGTCCCAGACAGGGTCTTACACGAAAT-TGAG
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* *
14223016 TAACGATGCTAATGTCCCAGACATGGTCTTACACGTAATCTCAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* *
14223060 TACAATGCCAATGTCCTAGACATGGTCTTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
14223099 ACATTTCGAT
Statistics
Matches: 98, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 87 0.89
44 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
Found at i:14228154 original size:25 final size:25
Alignment explanation
Indices: 14228126--14228174 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
14228116 AATTGAATTT
*
14228126 TAATTATCTTAAATATTTTTTATGA
1 TAATTATCTTAAATATTTTATATGA
*
14228151 TAATTTTCTTAAATATTTTATATG
1 TAATTATCTTAAATATTTTATATG
14228175 GCTTTATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (25 bp):
TAATTATCTTAAATATTTTATATGA
Found at i:14232020 original size:14 final size:15
Alignment explanation
Indices: 14231984--14232020 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
14231974 CAAACATTTG
14231984 TCAACATTAATTATT
1 TCAACATTAATTATT
*
14231999 T-AATATTAATTATT
1 TCAACATTAATTATT
14232013 TCAA-ATTA
1 TCAACATTA
14232021 CATTTTATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 17 0.85
15 3 0.15
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (15 bp):
TCAACATTAATTATT
Found at i:14232101 original size:61 final size:61
Alignment explanation
Indices: 14232035--14232222 Score: 181
Period size: 61 Copynumber: 3.1 Consensus size: 61
14232025 TTATAGTATC
14232035 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * ** * *
14232096 ATATATTTTAATTATAATATATTTA-ATAATAATTATGTTAA--ATT-A-TCTTTTA-TAGTATC
1 ATATATTATGATTTTAATAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AATT
* * *
14232155 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
14232216 ATATATT
1 ATATATT
14232223 TTAATTATAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
57 3 0.03
58 2 0.02
59 30 0.32
60 14 0.15
61 39 0.41
62 2 0.02
63 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:14232117 original size:16 final size:16
Alignment explanation
Indices: 14232096--14232141 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
14232086 TTATTAAATT
14232096 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
14232112 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
14232127 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
14232142 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:14232208 original size:120 final size:120
Alignment explanation
Indices: 14231991--14232259 Score: 454
Period size: 120 Copynumber: 2.2 Consensus size: 120
14231981 TTGTCAACAT
* *
14231991 TAAT-TATTTAATATTAATTAT-TTCAAATTACATTTTATAGTATCATATATTATGATTTTAATA
1 TAATATATTTAATAATAATTATGTT-AAATTACATTTTATAGTATCATATATTATGATTTGAATA
14232054 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
65 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
*
14232110 TAATATATTTAATAATAATTATGTTAAATTATC-TTTTATAGTATCATATATTATGATTTGAGTA
1 TAATATATTTAATAATAATTATGTTAAATTA-CATTTTATAGTATCATATATTATGATTTGAATA
*
14232174 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTA
65 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
14232230 TAATATATTTAATAATAATTATGTTTAAAT
1 TAATATATTTAATAATAATTATG-TTAAAT
14232260 ATGATTAAAT
Statistics
Matches: 142, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
119 4 0.03
120 129 0.91
121 9 0.06
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
TAATATATTTAATAATAATTATGTTAAATTACATTTTATAGTATCATATATTATGATTTGAATAA
ATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
Found at i:14232219 original size:59 final size:58
Alignment explanation
Indices: 14232036--14232219 Score: 139
Period size: 57 Copynumber: 3.1 Consensus size: 58
14232026 TATAGTATCA
*
14232036 TATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAATAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * *
14232095 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTA-TGTTAA-ATTATCTTT-TATAGTA
1 TATATTATGATTTAAATA-AAT-TCATATAAGAAT-ATTATTATTAAGA--AT-TTTAT-TA-AA
14232153 T
58 T
* *
14232154 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAATAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
14232215 TATAT
1 TATAT
14232220 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 12, Indels: 36
0.66 0.08 0.25
Matches are distributed among these distances:
55 1 0.01
56 11 0.12
57 15 0.16
58 12 0.13
59 11 0.12
61 6 0.06
62 12 0.13
63 15 0.16
64 11 0.12
65 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (58 bp):
TATATTATGATTTAAATAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:14232237 original size:16 final size:16
Alignment explanation
Indices: 14232216--14232257 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14232206 TTATTAAATT
*
14232216 ATATATTTTAATTATA
1 ATATATTTTAATAATA
14232232 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
14232247 AT-TATGTTTAA
1 ATATAT-TTTAA
14232258 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:14232242 original size:15 final size:15
Alignment explanation
Indices: 14232207--14232248 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14232197 TTAAGAATTT
*
14232207 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14232221 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14232235 TATTTAATAATAAT
1 TATTTAATTATAAT
14232249 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14232481 original size:45 final size:43
Alignment explanation
Indices: 14232381--14232490 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
14232371 TTTTCCATTA
14232381 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
14232420 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
14232465 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
14232491 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:14232492 original size:16 final size:16
Alignment explanation
Indices: 14232471--14232538 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
14232461 GATTTGCTAT
*
14232471 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
14232487 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
14232503 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14232519 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14232535 TACA
1 TACA
14232539 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:14232835 original size:61 final size:58
Alignment explanation
Indices: 14232770--14232900 Score: 147
Period size: 61 Copynumber: 2.2 Consensus size: 58
14232760 ATTTAATAAG
* * * * *
14232770 ATTATTATTAGATATATTTTAATAACAATAAAAATAAATAATATAATTATATT-TTAACATA
1 ATTATTATTAAATACAATTTAATAA-AAT---AATAAATAATATAATAACATTCTTAACATA
* * *
14232831 ATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAATAATAAATAATATAATAACATTCTTAACATA
14232889 ATTATTATTAAA
1 ATTATTATTAAA
14232901 ATATGAATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
57 17 0.28
58 19 0.31
60 3 0.05
61 22 0.36
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAATACAATTTAATAAAATAATAAATAATATAATAACATTCTTAACATA
Found at i:14237504 original size:48 final size:48
Alignment explanation
Indices: 14237443--14237669 Score: 235
Period size: 48 Copynumber: 4.7 Consensus size: 48
14237433 GTACATGTGA
* * *
14237443 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCT-AGATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGATATGT
* * *
14237491 GATCCCATATAAGACCATGTGTGGGACATGGCATCGGCGTTGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGT
* * * * * * * *
14237539 G-TGCTAGTGTAAGACCATGTTTGGAACATGGCATTGACCTCGATATGT
1 GATCCCA-TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGT
*
14237587 GA-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGT
1 GATCCCA-TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGT
** * *
14237635 GATTTCGTGTAAGACCATGTCTGGGACATTGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATC
14237670 TTTATGAGAC
Statistics
Matches: 149, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
47 4 0.03
48 144 0.97
49 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGT
Found at i:14237569 original size:96 final size:96
Alignment explanation
Indices: 14237450--14237668 Score: 280
Period size: 96 Copynumber: 2.3 Consensus size: 96
14237440 TGAGATCCCA
* * *
14237450 TGTAAGACCATGTCTGGGACATGGCATTGGCATCTAGATGAGATCCCA-TATAAGACCATGTGTG
1 TGTAAGACCATGTCTGGGACATGGCATTGACATCGAGATGAGA-CCCAGTATAAGACCATGTCTG
*
14237514 GGACATGGCATCGGCGTTGATATGTG-TGCTAG
65 GGACATGGCATCGGCATTGATATGTGAT-CTAG
* * * * * * *
14237546 TGTAAGACCATGTTTGGAACATGGCATTGACCTCGATATGTGAGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATTGACATCGAGATGAGACCCAGTATAAGACCATGTCTGG
* *
14237611 GACATGGCATCGGCATTGATATGTGATTTCG
66 GACATGGCATCGGCATTGATATGTGATCTAG
*
14237642 TGTAAGACCATGTCTGGGACATTGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
14237669 CTTTATGAGA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
95 3 0.03
96 101 0.96
97 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATTGACATCGAGATGAGACCCAGTATAAGACCATGTCTGG
GACATGGCATCGGCATTGATATGTGATCTAG
Found at i:14240001 original size:185 final size:185
Alignment explanation
Indices: 14239689--14240057 Score: 675
Period size: 185 Copynumber: 2.0 Consensus size: 185
14239679 TAAGATTTAA
14239689 TACGAGAATGTAAAGAAACAGTTTGTACTTTCAAACAGCTAAAGTCACAATAAAAGAGAACTGTT
1 TACGAGAATGTAAAGAAACAGTTTGTACTTTCAAACAGCTAAAGTCACAATAAAAGAGAACTGTT
14239754 CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
66 CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
14239819 GAAAGAAAATATCATATGCTTATTGAATCCTAATGGGTTAAAGTATCTAATGTTG
131 GAAAGAAAATATCATATGCTTATTGAATCCTAATGGGTTAAAGTATCTAATGTTG
* * *
14239874 TACGAGAATGTAAAGAAATAGTTTGTACTTTCAGACGGCTAAAGTCACAATAAAAGAGAACTGTT
1 TACGAGAATGTAAAGAAACAGTTTGTACTTTCAAACAGCTAAAGTCACAATAAAAGAGAACTGTT
14239939 CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
66 CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
* * * *
14240004 GACAGAAAATGTCATATGCTTCTTGAATCCTATTGGGTTAAAGTATCTAATGTT
131 GAAAGAAAATATCATATGCTTATTGAATCCTAATGGGTTAAAGTATCTAATGTT
14240058 ACCGACAAAT
Statistics
Matches: 177, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
185 177 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (185 bp):
TACGAGAATGTAAAGAAACAGTTTGTACTTTCAAACAGCTAAAGTCACAATAAAAGAGAACTGTT
CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
GAAAGAAAATATCATATGCTTATTGAATCCTAATGGGTTAAAGTATCTAATGTTG
Found at i:14244374 original size:78 final size:78
Alignment explanation
Indices: 14244283--14244434 Score: 223
Period size: 78 Copynumber: 1.9 Consensus size: 78
14244273 GATTTATTCC
* * * *
14244283 TGATTCACCATGGTAACTTAAGGCGGATAGCATTTGATCTCAGAAGGTAATCCTGATTCGCTACA
1 TGATTCACCATGGTAACCTAAGGCGGATAGCATTTGACCTCAAAAGGTAATCCTGATTCACTACA
14244348 GTTACATGATATA
66 GTTACATGATATA
** * * *
14244361 TGATTCATTATGGTAACCTAAGGTGGATAGGATTTGACCTGAAAAGGTAATCCTGATTCACTACA
1 TGATTCACCATGGTAACCTAAGGCGGATAGCATTTGACCTCAAAAGGTAATCCTGATTCACTACA
14244426 GTTACATGA
66 GTTACATGA
14244435 GATGTGACTC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 65 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (78 bp):
TGATTCACCATGGTAACCTAAGGCGGATAGCATTTGACCTCAAAAGGTAATCCTGATTCACTACA
GTTACATGATATA
Found at i:14244960 original size:44 final size:42
Alignment explanation
Indices: 14244879--14244986 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 42
14244869 ATTGGCTGAG
* * *
14244879 TAAATGGCACTATGTGTGCGATATCGATATGAGTTCGGTTTAA
1 TAAATGGCACTAAGTGTGCGATATCAATATGAGTTCGG-CTAA
* *
14244922 TCTAATGGCACTAAGTGTGCTATAT-AATTAT-AGCTTCGGCTAA
1 T-AAATGGCACTAAGTGTGCGATATCAA-TATGAG-TTCGGCTAA
14244965 TAAATTGGCACTAAGTGTGCGA
1 TAAA-TGGCACTAAGTGTGCGA
14244987 GTTCGTTGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
42 2 0.04
43 24 0.44
44 28 0.52
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (42 bp):
TAAATGGCACTAAGTGTGCGATATCAATATGAGTTCGGCTAA
Found at i:14249895 original size:29 final size:30
Alignment explanation
Indices: 14249829--14249947 Score: 133
Period size: 29 Copynumber: 4.2 Consensus size: 30
14249819 TACATACATG
*
14249829 CATATGGCCCA-CTAGGCCCAA-TCTTATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
14249857 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * *
14249886 CTTATGGCCCA-CTAGGCTCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
14249915 CATATGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
14249944 -ATAT
1 CATAT
14249948 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
28 22 0.29
29 53 0.71
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.29
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:14249933 original size:58 final size:57
Alignment explanation
Indices: 14249831--14249943 Score: 147
Period size: 58 Copynumber: 2.0 Consensus size: 57
14249821 CATACATGCA
** **
14249831 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
* *
14249888 TATGGCCCACTAGGCTCAATTCACATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCAAATGGCCCATCT-GGCCCAAATCATATT
14249944 ATATTCATGC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 19 0.40
58 29 0.60
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:14253638 original size:12 final size:12
Alignment explanation
Indices: 14253621--14253648 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14253611 TGTGTTACAT
14253621 ATGAGGATAATG
1 ATGAGGATAATG
14253633 ATGAGGATAATG
1 ATGAGGATAATG
14253645 ATGA
1 ATGA
14253649 TAATGCATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (12 bp):
ATGAGGATAATG
Found at i:14259143 original size:42 final size:43
Alignment explanation
Indices: 14259088--14259168 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 43
14259078 CTTACATGTT
* *
14259088 ATCAAATACCGATGCCACTGTCCCAGACAAGGTCTTACACAAA
1 ATCAAATACCGATGCAAATGTCCCAGACAAGGTCTTACACAAA
* *
14259131 ATCATATA-CGATGCAAATGTCCCAGACATGGTCTTACA
1 ATCAAATACCGATGCAAATGTCCCAGACAAGGTCTTACA
14259169 TAATATCACA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 27 0.79
43 7 0.21
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (43 bp):
ATCAAATACCGATGCAAATGTCCCAGACAAGGTCTTACACAAA
Found at i:14264303 original size:13 final size:13
Alignment explanation
Indices: 14264285--14264309 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14264275 TAATGGTATA
14264285 TTGAATCCATGAC
1 TTGAATCCATGAC
14264298 TTGAATCCATGA
1 TTGAATCCATGA
14264310 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:14264895 original size:27 final size:27
Alignment explanation
Indices: 14264857--14265035 Score: 166
Period size: 27 Copynumber: 6.6 Consensus size: 27
14264847 TAAATTGTAC
*
14264857 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGGTTTGAATATGT
* ***
14264884 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGGTTTGAATATGT
** *
14264910 ATGCACTAAGTGTGCGAATTG-ATCATGC
1 A-GCACTAAGTGTGCGGTTTGAAT-ATGT
* *
14264938 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCG-GTTTGAATATGT
* *
14264966 AGCACTAAGTGTGCGATTTGAATACGT
1 AGCACTAAGTGTGCGGTTTGAATATGT
* *
14264993 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCG-GTTTGAATATGT
*
14265020 AGCACTGAGTGTGCGG
1 AGCACTAAGTGTGCGG
14265036 GCTCAATATA
Statistics
Matches: 125, Mismatches: 21, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.02
27 101 0.81
28 20 0.16
29 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGTTTGAATATGT
Found at i:14264918 original size:54 final size:54
Alignment explanation
Indices: 14264857--14265034 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 54
14264847 TAAATTGTAC
* * *
14264857 AGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGA-TATGTAGCACTAAGTGTGCGAATTGAATATGAT
* ** * *
14264912 -GCACTAAGTGTGCGAATTGATCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGAT-ATGTAGCACTAAGTGTGCGA-ATTGAATATGAT
* * *
14264966 AGCACTAAGTGTGCGATTTGAATACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTG-ATATGTAGCACTAAGTGTGCGAATTGAATATGAT
*
14265020 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14265035 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 14, Indels: 11
0.81 0.11 0.09
Matches are distributed among these distances:
53 1 0.01
54 59 0.57
55 42 0.40
56 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGATATGTAGCACTAAGTGTGCGAATTGAATATGAT
Found at i:14265025 original size:82 final size:81
Alignment explanation
Indices: 14264854--14265035 Score: 249
Period size: 82 Copynumber: 2.2 Consensus size: 81
14264844 GATTAAATTG
* *
14264854 TACAGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14264919 GTGTGCGAATTGATCA
66 GTGTGCGAATTGATCA
* * **
14264935 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGAATACG-TAGCACT
1 TACAGCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
14264999 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGATCA
* *
14265017 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
14265036 GCTCAATATA
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.21
82 69 0.79
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGATCA
Found at i:14272341 original size:13 final size:13
Alignment explanation
Indices: 14272323--14272347 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14272313 TAATGGTATA
14272323 TTGAATCCATGAC
1 TTGAATCCATGAC
14272336 TTGAATCCATGA
1 TTGAATCCATGA
14272348 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:14272933 original size:27 final size:27
Alignment explanation
Indices: 14272895--14273072 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
14272885 TAAATTGTAC
14272895 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *** *
14272922 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGGTTTGACTATGT
** * *
14272948 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGGTTTGACTATGT
*
14272976 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
* *
14273004 AGCACTAAGTGTGCGATTTGA-TACGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *
14273030 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
*
14273057 AGCACTGAGTGTGCGG
1 AGCACTAAGTGTGCGG
14273073 GCTCAATATA
Statistics
Matches: 125, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
26 24 0.19
27 79 0.63
28 22 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGTTTGACTATGT
Found at i:14272956 original size:54 final size:55
Alignment explanation
Indices: 14272895--14273071 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 55
14272885 TAAATTGTAC
* * *
14272895 AGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
* * ** * *
14272950 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-ATTGAATATGAT
* * *
14273004 AGCACTAAGTGTGCGATTTGA-TACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
*
14273057 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14273072 GGCTCAATAT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
53 22 0.21
54 55 0.53
55 26 0.25
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
Found at i:14273043 original size:81 final size:81
Alignment explanation
Indices: 14272896--14273050 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
14272886 AAATTGTACA
* *
14272896 GCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
14272961 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
**
14272977 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTG-ATACG-TAGCACTAAGT
1 GCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
14273040 GTGCGAGTTGA
64 GTGCGAATTGA
14273051 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 1 0.01
81 37 0.55
82 29 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14273062 original size:81 final size:81
Alignment explanation
Indices: 14272892--14273072 Score: 231
Period size: 81 Copynumber: 2.2 Consensus size: 81
14272882 GATTAAATTG
* *
14272892 TACAGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14272957 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * **
14272973 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTG-ATACG-TAGCACT
1 TACAGCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14273036 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14273054 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
14273073 GCTCAATATA
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
80 2 0.02
81 54 0.64
82 29 0.34
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14280848 original size:27 final size:27
Alignment explanation
Indices: 14280789--14280965 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
14280779 TAAATTGTAC
14280789 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
14280815 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
14280841 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
14280869 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
14280897 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
14280924 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
14280951 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14280966 GCTCAATATA
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
26 14 0.11
27 92 0.71
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:14280902 original size:82 final size:80
Alignment explanation
Indices: 14280790--14280944 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
14280780 AAATTGTACA
* *
14280790 GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
14280854 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
14280870 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14280935 TGCGAGTTGA
64 TGCGAATTGA
14280945 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:14280956 original size:82 final size:80
Alignment explanation
Indices: 14280786--14280965 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 80
14280776 GATTAAATTG
* *
14280786 TACAGCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
14280851 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
14280866 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14280930 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
14280948 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14280966 GCTCAATATA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 17 0.20
81 1 0.01
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:14283108 original size:35 final size:35
Alignment explanation
Indices: 14283062--14283165 Score: 183
Period size: 35 Copynumber: 3.0 Consensus size: 35
14283052 CTCATATTCA
14283062 AGGGTACCCAATTAGGGCACATAATCAGGAAGCAT
1 AGGGTACCCAATTAGGGCACATAATCAGGAAGCAT
*
14283097 AGGGTACCCAATTAGGGCACATAATTAGGAAGCAT
1 AGGGTACCCAATTAGGGCACATAATCAGGAAGCAT
*
14283132 A-GGTACCTAATTAGGGCACATAATCAGGAAGCAT
1 AGGGTACCCAATTAGGGCACATAATCAGGAAGCAT
14283166 TCTCTCGAGC
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
34 31 0.47
35 35 0.53
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.19
Consensus pattern (35 bp):
AGGGTACCCAATTAGGGCACATAATCAGGAAGCAT
Found at i:14285607 original size:40 final size:40
Alignment explanation
Indices: 14285547--14285730 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
14285537 TATTCGAATG
*
14285547 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
14285587 ATATCCGGACTAAGATCCGAAGGCATTTCTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
14285627 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
14285667 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
14285707 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
14285731 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:14285680 original size:80 final size:79
Alignment explanation
Indices: 14285547--14285764 Score: 266
Period size: 80 Copynumber: 2.8 Consensus size: 79
14285537 TATTCGAATG
* * * *
14285547 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCGAAGGCA
* *
14285612 TTTCTGCGAGTTG-CT
65 TTTATGCGAG-TGACC
*
14285627 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGAT-CCGAAGGC
*
14285691 ATTTATGCTAGTGACC
64 ATTTATGCGAGTGACC
* * *
14285707 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATAT-C-GGCTAA-ATCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCGAAG
14285765 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
76 6 0.05
77 7 0.06
78 1 0.01
79 18 0.15
80 90 0.74
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCGAAGGCAT
TTATGCGAGTGACC
Found at i:14291699 original size:38 final size:38
Alignment explanation
Indices: 14291640--14291745 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
14291630 GCATTTTAAG
*
14291640 AATAT-AAAGAATATATATAAGTATGTATATG-ATGTA-A
1 AATATGAAA-AATATATATAAGTATGTATAAGAAT-TAGA
* *
14291677 AATATGCATAAATATATGTAAGTA--TATAAGAATTATGA
1 AATATG-AAAAATATATATAAGTATGTATAAGAATTA-GA
*
14291715 AATATGAAAAATATATTTAAGTATGTATAAG
1 AATATGAAAAATATATATAAGTATGTATAAG
14291746 TACGTATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
36 7 0.12
37 22 0.39
38 20 0.35
39 8 0.14
ACGTcount: A:0.51, C:0.01, G:0.13, T:0.35
Consensus pattern (38 bp):
AATATGAAAAATATATATAAGTATGTATAAGAATTAGA
Found at i:14292124 original size:19 final size:18
Alignment explanation
Indices: 14292100--14292160 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
14292090 AGTATATACA
14292100 ATATAATATTAGAAAATAT
1 ATATAATATT-GAAAATAT
*
14292119 ATATAATAGTGTAAAATAT
1 ATATAATATTG-AAAATAT
14292138 AACTAATAATATT-AAAATAT
1 -A-T-ATAATATTGAAAATAT
14292158 ATA
1 ATA
14292161 CAATGATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
17 1 0.03
18 2 0.06
19 17 0.47
20 8 0.22
21 1 0.03
22 7 0.19
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (18 bp):
ATATAATATTGAAAATAT
Found at i:14292211 original size:64 final size:63
Alignment explanation
Indices: 14292092--14292222 Score: 162
Period size: 64 Copynumber: 2.1 Consensus size: 63
14292082 TAAACAACAG
*
14292092 TATATACAATATAATATTAGAAAATATATATAATAGTGTAAAATATAACTAATAATATTAAAA
1 TATATACAATATAATATTAAAAAATATATATAATAGTGTAAAATATAACTAATAATATTAAAA
* *
14292155 TATATACAATGATAATATATATAAAAGATATATGTATATA-TGT-ATATATAA-T-ATAATATTA
1 TATATACAAT-ATAATAT-TA-AAAA-ATATATATA-ATAGTGTAAAATATAACTAATAATATTA
14292216 AAA
61 AAA
14292219 TATA
1 TATA
14292223 ATAATACGAC
Statistics
Matches: 60, Mismatches: 3, Indels: 9
0.83 0.04 0.12
Matches are distributed among these distances:
63 10 0.17
64 23 0.38
65 3 0.05
66 10 0.17
67 11 0.18
68 3 0.05
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.37
Consensus pattern (63 bp):
TATATACAATATAATATTAAAAAATATATATAATAGTGTAAAATATAACTAATAATATTAAAA
Found at i:14292441 original size:3 final size:3
Alignment explanation
Indices: 14292426--14292459 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
14292416 AAGCATAAAC
*
14292426 TAA TAA AAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
14292460 GATGATAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:14292588 original size:23 final size:23
Alignment explanation
Indices: 14292569--14292632 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
14292559 TGTATACACG
14292569 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
*
14292592 TACATAATAATAATACTAATACTAA
1 TACATAATAAAAATA-T-ATACTAA
* *
14292617 TA-ATACTAATAATATA
1 TACATAATAAAAATATA
14292633 AAAATAACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
22 1 0.03
23 15 0.41
24 12 0.32
25 9 0.24
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:14292603 original size:3 final size:3
Alignment explanation
Indices: 14292572--14292639 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
14292562 ATACACGTAC
* * * *
14292572 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA CTA ATA CTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
14292619 ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
14292640 CAAGGATATT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:14293225 original size:8 final size:8
Alignment explanation
Indices: 14293212--14293274 Score: 54
Period size: 8 Copynumber: 7.2 Consensus size: 8
14293202 TAAAAAAATA
14293212 TATTTTTT
1 TATTTTTT
14293220 TATTTTTT
1 TATTTTTT
14293228 ATATATTTTT
1 -TAT-TTTTT
14293238 TATGTTTATAT
1 TAT-TTT-T-T
* *
14293249 TATATTGT
1 TATTTTTT
*
14293257 TATTTTTA
1 TATTTTTT
14293265 TATTTTTT
1 TATTTTTT
14293273 TA
1 TA
14293275 GTATATATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
8 23 0.52
9 9 0.20
10 8 0.18
11 4 0.09
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (8 bp):
TATTTTTT
Found at i:14293233 original size:19 final size:18
Alignment explanation
Indices: 14293209--14293273 Score: 71
Period size: 19 Copynumber: 3.6 Consensus size: 18
14293199 ACGTAAAAAA
14293209 ATATATTTTTTTATTTTT
1 ATATATTTTTTTATTTTT
*
14293227 -TATATATTTTTTATGTTT
1 ATATAT-TTTTTTATTTTT
* *
14293245 ATATTATATTGTTATTTTT
1 ATA-TATTTTTTTATTTTT
14293264 ATAT-TTTTTT
1 ATATATTTTTT
14293274 AGTATATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
17 9 0.24
18 12 0.32
19 14 0.37
20 3 0.08
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
ATATATTTTTTTATTTTT
Found at i:14293285 original size:19 final size:19
Alignment explanation
Indices: 14293209--14293286 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 19
14293199 ACGTAAAAAA
* *
14293209 ATATATTTTTTTATTTTTT
1 ATATATTTTTTTAGTTTAT
14293228 ATATA-TTTTTTATGTTTAT
1 ATATATTTTTTTA-GTTTAT
* *
14293247 AT-TATATTGTTA-TTT-T
1 ATATATTTTTTTAGTTTAT
*
14293263 -TATATTTTTTTAGTATAT
1 ATATATTTTTTTAGTTTAT
14293281 ATATAT
1 ATATAT
14293287 GGGAAAATAG
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
15 1 0.02
16 9 0.20
17 5 0.11
18 10 0.22
19 21 0.46
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (19 bp):
ATATATTTTTTTAGTTTAT
Found at i:14294575 original size:50 final size:49
Alignment explanation
Indices: 14294457--14294632 Score: 196
Period size: 50 Copynumber: 3.5 Consensus size: 49
14294447 TGAGGTCGCA
* * * *
14294457 TGTGTAGTACTAAGTGCAAGG-TACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGC-AGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
14294508 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
14294558 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
14294607 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
14294633 TGCGTACTAG
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 31 0.28
50 46 0.42
51 27 0.25
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:14299234 original size:39 final size:39
Alignment explanation
Indices: 14299183--14299264 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
14299173 TTTCACACGG
*
14299183 TTGAGACACATACCCGTGTTTCTACTCGTATGACCAATT
1 TTGAGACACATACCCGTGTCTCTACTCGTATGACCAATT
14299222 TTGAGACACATACCCGTGTCTCTACTCGTATGACCAATT
1 TTGAGACACATACCCGTGTCTCTACTCGTATGACCAATT
14299261 TTGA
1 TTGA
14299265 TCATTCTGTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (39 bp):
TTGAGACACATACCCGTGTCTCTACTCGTATGACCAATT
Found at i:14300915 original size:21 final size:21
Alignment explanation
Indices: 14300877--14300920 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14300867 AAATTTAACA
* *
14300877 TCAATTTAATCCATTTCATAT
1 TCAATTTAATCCAATTCACAT
*
14300898 TCAATTTAATTCAATTCACAT
1 TCAATTTAATCCAATTCACAT
14300919 TC
1 TC
14300921 TAGGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.45
Consensus pattern (21 bp):
TCAATTTAATCCAATTCACAT
Found at i:14304400 original size:42 final size:42
Alignment explanation
Indices: 14304353--14304570 Score: 265
Period size: 42 Copynumber: 5.2 Consensus size: 42
14304343 CGTGCTTTAC
*
14304353 TTTCTGTTCAGCTCTTACAAGCTTTTGTTCAACTCTTATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTTTGTTCAACTCTTATGAG
* * *
14304395 TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACTTTTATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTTTGTTCAACTCTTATGAG
* ** * * *
14304437 TTTCTGTTAAGCTCTTATAAGCTTCTGTTCAATTCTTACGAG
1 TTTCTGTTCAGCTCTTACGAGCTTTTGTTCAACTCTTATGAG
* ** * **
14304479 TTTCTTTTCAAATTTTACGAGCTTTTGTTCAACTCTTACAAG
1 TTTCTGTTCAGCTCTTACGAGCTTTTGTTCAACTCTTATGAG
* * *
14304521 CTTCTGTTCAGCTCCTACGAGCTTTTGTTCAGCTCTTATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTTTGTTCAACTCTTATGAG
14304563 TTTCTGTT
1 TTTCTGTT
14304571 AATGATGTAC
Statistics
Matches: 147, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 147 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTACGAGCTTTTGTTCAACTCTTATGAG
Found at i:14304463 original size:63 final size:62
Alignment explanation
Indices: 14304378--14304572 Score: 221
Period size: 63 Copynumber: 3.1 Consensus size: 62
14304368 TACAAGCTTT
* * *
14304378 TGTTCAACTCTTATGAGTTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACTTTTATGAGTTTC
1 TGTT-AACTCTTATAAGCTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTTTTATGAGTTTC
** * * * *
14304441 TGTTAAGCTCTTATAAGCTTCTGTTCAATTCTTACGAGTTTCTTTTCAAATTTTACGAGCTTT-
1 TGTTAA-CTCTTATAAGCTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTTTTATGAG-TTTC
* * * * *
14304504 TGTTCAACTCTTACAAGCTTCTGTTCAGCTCCTACGAGCTTTTGTTCAGCTCTTATGAGTTTC
1 TGTT-AACTCTTATAAGCTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTTTTATGAGTTTC
14304567 TGTTAA
1 TGTTAA
14304573 TGATGTACTC
Statistics
Matches: 108, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
62 7 0.06
63 96 0.89
64 5 0.05
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (62 bp):
TGTTAACTCTTATAAGCTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTTTTATGAGTTTC
Found at i:14304570 original size:21 final size:21
Alignment explanation
Indices: 14304353--14304570 Score: 183
Period size: 21 Copynumber: 10.4 Consensus size: 21
14304343 CGTGCTTTAC
* *
14304353 TTTCTGTTCAGCTCTTACAAG
1 TTTCTGTTCAACTCTTACGAG
*
14304374 CTTT-TGTTCAACTCTTATGAG
1 -TTTCTGTTCAACTCTTACGAG
* *
14304395 TTTCTGTTCAGCTCTTATGAG
1 TTTCTGTTCAACTCTTACGAG
* * *
14304416 CTTCTGTTCAACTTTTATGAG
1 TTTCTGTTCAACTCTTACGAG
**
14304437 TTTCTGTT-AAGCTCTTATAAG
1 TTTCTGTTCAA-CTCTTACGAG
* *
14304458 CTTCTGTTCAATTCTTACGAG
1 TTTCTGTTCAACTCTTACGAG
* * *
14304479 TTTCTTTTCAAATTTTACGAG
1 TTTCTGTTCAACTCTTACGAG
*
14304500 CTTT-TGTTCAACTCTTACAAG
1 -TTTCTGTTCAACTCTTACGAG
* * *
14304521 CTTCTGTTCAGCTCCTACGAG
1 TTTCTGTTCAACTCTTACGAG
* *
14304542 CTTT-TGTTCAGCTCTTATGAG
1 -TTTCTGTTCAACTCTTACGAG
14304563 TTTCTGTT
1 TTTCTGTT
14304571 AATGATGTAC
Statistics
Matches: 160, Mismatches: 29, Indels: 15
0.78 0.14 0.07
Matches are distributed among these distances:
20 10 0.06
21 140 0.88
22 10 0.06
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (21 bp):
TTTCTGTTCAACTCTTACGAG
Found at i:14308384 original size:28 final size:27
Alignment explanation
Indices: 14308345--14308399 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
14308335 TGAAGGAAGC
14308345 ATTTTGGTGGCTAAGCCACAAATATCT
1 ATTTTGGTGGCTAAGCCACAAATATCT
* **
14308372 ATTTCTGGTGGCTATGCCATGAATATCT
1 ATTT-TGGTGGCTAAGCCACAAATATCT
14308400 GTTCTGGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
ATTTTGGTGGCTAAGCCACAAATATCT
Found at i:14311923 original size:47 final size:47
Alignment explanation
Indices: 14311857--14312380 Score: 772
Period size: 47 Copynumber: 11.1 Consensus size: 47
14311847 GAAATGATAG
*
14311857 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14311904 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14311951 TAAGG-CTAATGG-CGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14311996 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGA
*
14312045 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14312091 TAAGGCCTAATGGCCGATGTGATGGATGTG-AAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
14312139 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
**
14312187 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14312234 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14312281 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * *
14312330 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14312377 TAAG
1 TAAG
14312381 TCCCGAAGGG
Statistics
Matches: 438, Mismatches: 27, Indels: 23
0.90 0.06 0.05
Matches are distributed among these distances:
45 37 0.08
46 61 0.14
47 192 0.44
48 38 0.09
49 110 0.25
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:14312204 original size:96 final size:96
Alignment explanation
Indices: 14311857--14312380 Score: 798
Period size: 96 Copynumber: 5.5 Consensus size: 96
14311847 GAAATGATAG
* *
14311857 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
14311922 GTGATGAATGTGAAAGTG--TATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* *
14311951 TAAGG-CTAATGG-CGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCAAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
14312014 GTGATGAATGTGAAAGTGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
14312045 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
14312109 GTGATGGATGTG-AAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
14312139 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGCTAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
14312203 ATGTGATGAATGTGAAAGTGTATATACA--TGA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGA
14312234 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
14312299 GTGATGAATGTGGAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
14312330 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14312381 TCCCGAAGGG
Statistics
Matches: 397, Mismatches: 21, Indels: 22
0.90 0.05 0.05
Matches are distributed among these distances:
92 65 0.16
93 35 0.09
94 96 0.24
95 60 0.15
96 129 0.32
97 12 0.03
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:14312378 original size:143 final size:142
Alignment explanation
Indices: 14311857--14312380 Score: 776
Period size: 143 Copynumber: 3.7 Consensus size: 142
14311847 GAAATGATAG
* *
14311857 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACA-GGCCTAATGGCCG
14311920 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGG-CGATGTGATGAATGTGAAAG
65 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
14311983 TGTATATATGAGA
130 TGTATATATGTGA
* * *
14311996 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA-CAGGCCTAATGGCCG
* *
14312061 ATGTGATGAATGTG-AAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGGATGTG-AAG
65 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
14312124 TGTATATATATGTGA
130 TG--TATATATGTGA
14312139 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG-CTAAGGCCTAATGGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAC--AGGCCTAATGGCC
**
14312202 GATGTGATGAATGTGAAAGTGTATATACATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
64 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
14312267 GTGTATATATGTGA
129 GTGTATATATGTGA
* * * *
14312281 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCTGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAGGCCT-AATGGCCG
* * *
14312346 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
65 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14312381 TCCCGAAGGG
Statistics
Matches: 349, Mismatches: 22, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
139 35 0.10
140 20 0.06
141 49 0.14
142 105 0.30
143 134 0.38
144 6 0.02
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (142 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATATGTGA
Found at i:14312555 original size:37 final size:37
Alignment explanation
Indices: 14312499--14312577 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14312489 CCGAGCTCTA
* * *
14312499 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
14312536 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14312573 AAGAC
1 AAGAC
14312578 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.