Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 44 of 344
Found at i:14621070 original size:19 final size:19
Alignment explanation
Indices: 14621046--14621085 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
14621036 AAGAAGGCAA
*
14621046 GCTTTGTTTGTTGATCACT
1 GCTTTGTTCGTTGATCACT
14621065 GCTTTGTTCGTTGATCACT
1 GCTTTGTTCGTTGATCACT
14621084 GC
1 GC
14621086 AGTTGTGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.47
Consensus pattern (19 bp):
GCTTTGTTCGTTGATCACT
Found at i:14621341 original size:20 final size:22
Alignment explanation
Indices: 14621299--14621344 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
14621289 TTAAATATAA
*
14621299 ATATAAATATTTATTTTATTTT
1 ATATAAATATTTAGTTTATTTT
14621321 ATATAAATATTT-GTTTA-TTT
1 ATATAAATATTTAGTTTATTTT
14621341 ATAT
1 ATAT
14621345 TCATATTTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.30
21 4 0.17
22 12 0.52
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
ATATAAATATTTAGTTTATTTT
Found at i:14625108 original size:93 final size:90
Alignment explanation
Indices: 14624919--14625108 Score: 211
Period size: 93 Copynumber: 2.1 Consensus size: 90
14624909 AGTTTAATAG
*
14624919 TATGCAAACACTAGTGGTTTATCCACAAACTTACTGGCAGCTCTTATTTGCAAATACGTTGTGTA
1 TATGCAAACACTAGTGGTTTATCCACAAACTTACTGGCAGCTCTTATCTGCAAATACGTTGTGTA
* *
14624984 ATCACAACTATTGGCAGCGTTTTAA
66 ATCACAACTACTGGCAGCGTATTAA
** * * ** * *
14625009 CCTGCAAGCACTAGTGGTTTATCCATAATTTTTTTACTGGCAGCTGTTATCTGCAAACT-TGTTG
1 TATGCAAACACTAGTGGTTTATCCACAA---ACTTACTGGCAGCTCTTATCTGCAAA-TACGTTG
** *
14625073 TGTAATCACAACTACTGGTGGTGTATTAA
62 TGTAATCACAACTACTGGCAGCGTATTAA
14625102 TATGCAA
1 TATGCAA
14625109 TACTGGTGGC
Statistics
Matches: 80, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
90 24 0.30
93 55 0.69
94 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (90 bp):
TATGCAAACACTAGTGGTTTATCCACAAACTTACTGGCAGCTCTTATCTGCAAATACGTTGTGTA
ATCACAACTACTGGCAGCGTATTAA
Found at i:14627237 original size:17 final size:19
Alignment explanation
Indices: 14627207--14627249 Score: 63
Period size: 17 Copynumber: 2.3 Consensus size: 19
14627197 TAATAGAAAT
14627207 TATTTTAAGCATATATTT-A
1 TATTTTAA-CATATATTTAA
14627226 TATTTTAA-ATATATTTAA
1 TATTTTAACATATATTTAA
14627244 TATTTT
1 TATTTT
14627250 CTTTTAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.35
18 7 0.30
19 8 0.35
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
TATTTTAACATATATTTAA
Found at i:14627969 original size:23 final size:23
Alignment explanation
Indices: 14627943--14627987 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
14627933 AAAAAATATG
14627943 TTGTTTTCTCATTAATTTTAAAT
1 TTGTTTTCTCATTAATTTTAAAT
*
14627966 TTGTTTTGTCATTAATTTTAAA
1 TTGTTTTCTCATTAATTTTAAA
14627988 CACGAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (23 bp):
TTGTTTTCTCATTAATTTTAAAT
Found at i:14628896 original size:23 final size:25
Alignment explanation
Indices: 14628870--14628916 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
14628860 TATCATTCAT
*
14628870 TTCATTATATC-A-ATATTTTATGC
1 TTCATCATATCTATATATTTTATGC
*
14628893 TTCATCATTTCTATATATTTTATG
1 TTCATCATATCTATATATTTTATG
14628917 AATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.55
Consensus pattern (25 bp):
TTCATCATATCTATATATTTTATGC
Found at i:14629237 original size:46 final size:46
Alignment explanation
Indices: 14629177--14629442 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
14629167 TTTGACGTGA
* * * * * *
14629177 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
14629223 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
14629269 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
14629315 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
14629361 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
14629399 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
14629443 AGAGCACACT
Statistics
Matches: 198, Mismatches: 13, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
38 33 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 151 0.76
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:14629407 original size:38 final size:38
Alignment explanation
Indices: 14629356--14629431 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
14629346 CATTTCATAT
14629356 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
14629394 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
14629432 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:14634682 original size:18 final size:17
Alignment explanation
Indices: 14634659--14634700 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
14634649 AAACATAATG
14634659 ATATATAAAAA-TAATACT
1 ATATATAAAAAGT-ATA-T
14634677 ATATATAAAAAGTATAT
1 ATATATAAAAAGTATAT
14634694 ATATATA
1 ATATATA
14634701 CACGTATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.35
18 14 0.61
19 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
ATATATAAAAAGTATAT
Found at i:14634812 original size:22 final size:21
Alignment explanation
Indices: 14634782--14634832 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
14634772 CATGTACATA
*
14634782 ATATGGTATTTAAAAAATATAT
1 ATATAGTATTT-AAAAATATAT
*
14634804 ATATAGTA-TTAAAAATGTAT
1 ATATAGTATTTAAAAATATAT
*
14634824 ACATAGTAT
1 ATATAGTAT
14634833 ATATACTAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 16 0.64
21 2 0.08
22 7 0.28
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (21 bp):
ATATAGTATTTAAAAATATAT
Found at i:14634817 original size:20 final size:20
Alignment explanation
Indices: 14634794--14634832 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14634784 ATGGTATTTA
*
14634794 AAAAATATATATATAGTATT
1 AAAAATATATACATAGTATT
*
14634814 AAAAATGTATACATAGTAT
1 AAAAATATATACATAGTAT
14634833 ATATACTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
AAAAATATATACATAGTATT
Found at i:14635674 original size:22 final size:21
Alignment explanation
Indices: 14635649--14635712 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
14635639 ACGATAATGG
*
14635649 TAATGGTAAATATAATAATAAA
1 TAATGGTAAAAATAATAA-AAA
**
14635671 TAATATTAAAAATAATAAAAA
1 TAATGGTAAAAATAATAAAAA
*
14635692 -AATGGTAAAAGTAATATAAAA
1 TAATGGTAAAAATAATA-AAAA
14635713 AAACTAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
20 13 0.37
21 7 0.20
22 15 0.43
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (21 bp):
TAATGGTAAAAATAATAAAAA
Found at i:14637664 original size:20 final size:21
Alignment explanation
Indices: 14637639--14637686 Score: 80
Period size: 22 Copynumber: 2.3 Consensus size: 21
14637629 TAATTTAATC
14637639 TTTAAAT-AAAAATAAATATA
1 TTTAAATAAAAAATAAATATA
14637659 TTTAAATAAAAAAATAAATATA
1 TTTAAAT-AAAAAATAAATATA
14637681 TTTAAA
1 TTTAAA
14637687 ATTACATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 7 0.27
22 19 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
TTTAAATAAAAAATAAATATA
Found at i:14638201 original size:39 final size:39
Alignment explanation
Indices: 14638158--14638232 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
14638148 TCACTTAATT
*
14638158 TTTTTCTCCATTTAATTAATCTAATTAAAATAATTGAAA
1 TTTTTCTCAATTTAATTAATCTAATTAAAATAATTGAAA
* * *
14638197 TTTTTCTTAATTTAATTACTTTAATTAAAATAATTG
1 TTTTTCTCAATTTAATTAATCTAATTAAAATAATTG
14638233 TGTGAATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.51
Consensus pattern (39 bp):
TTTTTCTCAATTTAATTAATCTAATTAAAATAATTGAAA
Found at i:14639548 original size:21 final size:18
Alignment explanation
Indices: 14639505--14639549 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 18
14639495 ACAAAAGTAT
14639505 ATACATAATATATATGAA
1 ATACATAATATATATGAA
14639523 A-ACATAATATAGTATTAGAA
1 ATACATAATATA-TA-T-GAA
14639543 ATACATA
1 ATACATA
14639550 TTAGAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 10 0.43
18 3 0.13
19 1 0.04
20 4 0.17
21 5 0.22
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.31
Consensus pattern (18 bp):
ATACATAATATATATGAA
Found at i:14640004 original size:11 final size:11
Alignment explanation
Indices: 14639843--14640043 Score: 106
Period size: 11 Copynumber: 17.2 Consensus size: 11
14639833 CACGAAATAG
*
14639843 TATAAAAAATA
1 TATAAAATATA
14639854 TATAACTAATA-A
1 TATAA--AATATA
14639866 TATTAAAATATA
1 TA-TAAAATATA
*
14639878 TACATGATAATATA
1 T--AT-AAAATATA
*
14639892 TA-AAAAAATA
1 TATAAAATATA
*
14639902 TTAGAAAATATA
1 -TATAAAATATA
*
14639914 TGTACACAATATA
1 TATA-A-AATATA
14639927 TATATAAATATA
1 TATA-AAATATA
* *
14639939 TACATAATATA
1 TATAAAATATA
*
14639950 GTATTAAA-ATA
1 -TATAAAATATA
14639961 T-TAAAATATAA
1 TATAAAATAT-A
14639972 TATTAAAA-ATA
1 TA-TAAAATATA
* *
14639983 CATATAATATA
1 TATAAAATATA
14639994 TATAAAATATA
1 TATAAAATATA
* *
14640005 TACACAATATA
1 TATAAAATATA
14640016 GTATTAAAATATA
1 -TA-TAAAATATA
14640029 TATACATAATATA
1 TATA-A-AATATA
14640042 TA
1 TA
14640044 CTTATTAGAT
Statistics
Matches: 146, Mismatches: 23, Indels: 40
0.70 0.11 0.19
Matches are distributed among these distances:
9 4 0.03
10 13 0.09
11 49 0.34
12 34 0.23
13 37 0.25
14 9 0.06
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.35
Consensus pattern (11 bp):
TATAAAATATA
Found at i:14640039 original size:13 final size:13
Alignment explanation
Indices: 14639873--14640043 Score: 67
Period size: 13 Copynumber: 13.4 Consensus size: 13
14639863 TAATATTAAA
*
14639873 ATATATACATGAT
1 ATATATACATAAT
* *
14639886 AATATATA-AAAAA
1 -ATATATACATAAT
* *
14639899 ATAT-TAGAAAAT
1 ATATATACATAAT
* *
14639911 ATATGTACACAAT
1 ATATATACATAAT
14639924 ATATAT--ATAA-
1 ATATATACATAAT
14639934 ATATATACATAAT
1 ATATATACATAAT
14639947 ATAGTATTA-A-AAT
1 ATA-TA-TACATAAT
* *
14639960 AT-TAAAATATAAT
1 ATAT-ATACATAAT
* *
14639973 AT-TAAAAATACAT
1 ATATATACATA-AT
* *
14639986 ATAATATATATAAA
1 AT-ATATACATAAT
*
14640000 ATATATACACAAT
1 ATATATACATAAT
14640013 ATAGTATTA-A-AAT
1 ATA-TA-TACATAAT
14640026 ATATATACATAAT
1 ATATATACATAAT
14640039 ATATA
1 ATATA
14640044 CTTATTAGAT
Statistics
Matches: 124, Mismatches: 16, Indels: 35
0.71 0.09 0.20
Matches are distributed among these distances:
10 6 0.05
11 9 0.07
12 27 0.22
13 56 0.45
14 16 0.13
15 10 0.08
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (13 bp):
ATATATACATAAT
Found at i:14640055 original size:26 final size:26
Alignment explanation
Indices: 14639934--14640067 Score: 70
Period size: 26 Copynumber: 5.7 Consensus size: 26
14639924 ATATATATAA
14639934 ATATATACATAATATAGTA-TT-AAA-
1 ATATATACATAATATA-TACTTAAAAG
14639958 ATAT-TA-A-AATATAATA-TTAAAA-
1 ATATATACATAATAT-ATACTTAAAAG
*
14639980 ATACAT--ATAATATATA--T-AAA-
1 ATATATACATAATATATACTTAAAAG
* *
14640000 ATATATACACAATATAGTA-TTAAAAT
1 ATATATACATAATATA-TACTTAAAAG
**
14640026 ATATATACATAATATATACTTATTAG
1 ATATATACATAATATATACTTAAAAG
14640052 ATATA-A-ATAA-ATATAC
1 ATATATACATAATATATAC
14640068 GTACATACAT
Statistics
Matches: 92, Mismatches: 7, Indels: 23
0.75 0.06 0.19
Matches are distributed among these distances:
20 8 0.09
21 10 0.11
22 19 0.21
23 16 0.17
24 9 0.10
25 6 0.07
26 24 0.26
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (26 bp):
ATATATACATAATATATACTTAAAAG
Found at i:14640676 original size:24 final size:24
Alignment explanation
Indices: 14640646--14640702 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
14640636 TCGGCGATCG
*
14640646 GACCGCCGTCCGTCCTTCGCCAGC
1 GACCGCCGTCCGTCCGTCGCCAGC
* *
14640670 GATCGCCATCCGTCCGTCGCCAGC
1 GACCGCCGTCCGTCCGTCGCCAGC
14640694 GACCGCCGT
1 GACCGCCGT
14640703 ATACGGCGGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.11, C:0.47, G:0.26, T:0.16
Consensus pattern (24 bp):
GACCGCCGTCCGTCCGTCGCCAGC
Found at i:14642224 original size:14 final size:14
Alignment explanation
Indices: 14642205--14642253 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
14642195 GTTGATTTTT
*
14642205 TTGAAAAGTAGAAA
1 TTGAAAAGAAGAAA
*
14642219 TTGAAAAGAAAAAA
1 TTGAAAAGAAGAAA
*
14642233 TTGAAAAGCAGAAA
1 TTGAAAAGAAGAAA
14642247 TTGAAAA
1 TTGAAAA
14642254 TTCCTCAGCG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.61, C:0.02, G:0.18, T:0.18
Consensus pattern (14 bp):
TTGAAAAGAAGAAA
Found at i:14642364 original size:73 final size:73
Alignment explanation
Indices: 14642233--14642458 Score: 348
Period size: 73 Copynumber: 3.1 Consensus size: 73
14642223 AAAGAAAAAA
* * *
14642233 TTGAAAAGCAGAAATTGAAAATT-CCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATG
1 TTGAAAAACAGAAATTG-AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
14642297 AGTTGATTT
65 AGTTGATTT
* *
14642306 TTGACAAACAG-AATTCGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATG
1 TTGAAAAACAGAAATT-GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
14642370 AGTCGATTT
65 AGTTGATTT
*
14642379 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
14642444 GTTGATTTT
66 GTTGA-TTT
14642453 TTGAAA
1 TTGAAA
14642459 CATAAATTAA
Statistics
Matches: 139, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
72 9 0.06
73 117 0.84
74 13 0.09
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:14642526 original size:159 final size:157
Alignment explanation
Indices: 14642327--14642628 Score: 514
Period size: 159 Copynumber: 1.9 Consensus size: 157
14642317 AATTCGAAAT
*
14642327 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTCGATTTTTGAAAAACAGAA
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTCGATTTTTGAAAAACAGAA
14642392 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
66 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGA
*
14642457 AACATAAATTAAAAAACAAAAACTGAACA
130 AACAGAAA-TAAAAAACAAAAACTGAACA
* * * *
14642486 TACCTCAGCGTGCCCTGAGGCTTAGCTCACCTCTCGCAATATGAGTCGCTTTTTGAAAAACAGAA
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTCGATTTTTGAAAAACAGAA
* *
14642551 ATTGAAAATACCTTAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
66 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
14642616 ACAGAAATAAAAA
131 ACAGAAATAAAAA
14642629 TATTAGAATA
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
157 6 0.04
158 14 0.10
159 115 0.85
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (157 bp):
TACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTCGATTTTTGAAAAACAGAA
ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
ACAGAAATAAAAAACAAAAACTGAACA
Found at i:14642539 original size:86 final size:85
Alignment explanation
Indices: 14642382--14642543 Score: 243
Period size: 86 Copynumber: 1.9 Consensus size: 85
14642372 TCGATTTTTG
* * * *
14642382 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
14642447 GATTTTTTGAAACATAAATTA
66 GA-TTTTTGAAACATAAATTA
* * *
14642468 AAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTTAGCTCACCTCTCGCAATATGAGTC
1 AAAAACAAAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
*
14642533 GCTTTTTGAAA
66 GATTTTTGAAA
14642544 AACAGAAATT
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
85 9 0.13
86 59 0.87
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (85 bp):
AAAAACAAAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
GATTTTTGAAACATAAATTA
Found at i:14642588 original size:73 final size:73
Alignment explanation
Indices: 14642468--14642623 Score: 226
Period size: 73 Copynumber: 2.2 Consensus size: 73
14642458 ACATAAATTA
* * * *
14642468 AAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTTAGCTCACCTCTCGCAATATGAGTC
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCTCTCGCAATATGAGTC
*
14642533 GCTTTTTG
66 GATTTTTG
* * *
14642541 AAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCTCTCGCAATATGAGTC
14642606 GATTTTTG
66 GATTTTTG
14642614 --AAACAGAAAT
1 AAAAACAGAAAT
14642624 AAAAATATTA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
71 10 0.13
73 65 0.87
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (73 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCTCTCGCAATATGAGTC
GATTTTTG
Found at i:14651440 original size:29 final size:29
Alignment explanation
Indices: 14651398--14651456 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
14651388 TAGTCATAAG
14651398 TTCGACAGACATAATTTCATATTCGACGT
1 TTCGACAGACATAATTTCATATTCGACGT
*
14651427 TTCGACAGACATAATTTCATATTCGGCGT
1 TTCGACAGACATAATTTCATATTCGACGT
14651456 T
1 T
14651457 CTTCCTCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (29 bp):
TTCGACAGACATAATTTCATATTCGACGT
Found at i:14656407 original size:13 final size:13
Alignment explanation
Indices: 14656389--14656442 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
14656379 TGCAAGTATG
*
14656389 ATATGCGAGCTCA
1 ATATGCAAGCTCA
* *
14656402 ATATGCGAGCCCA
1 ATATGCAAGCTCA
* *
14656415 ATGTGCAAGCTCG
1 ATATGCAAGCTCA
*
14656428 ATATGTAAGCTCA
1 ATATGCAAGCTCA
14656441 AT
1 AT
14656443 GTGTGAACCA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (13 bp):
ATATGCAAGCTCA
Found at i:14657251 original size:10 final size:10
Alignment explanation
Indices: 14657236--14657265 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
14657226 CTTCATTGTA
14657236 TGATGAAGTG
1 TGATGAAGTG
14657246 TGATGAAGTG
1 TGATGAAGTG
14657256 TGATGAAGTG
1 TGATGAAGTG
14657266 CCATTGATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.40, T:0.30
Consensus pattern (10 bp):
TGATGAAGTG
Found at i:14658750 original size:9 final size:9
Alignment explanation
Indices: 14658736--14658765 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14658726 ATGTGTTATA
14658736 TTAGGGTTT
1 TTAGGGTTT
*
14658745 TTAGGGTTG
1 TTAGGGTTT
14658754 TTAGGGTTT
1 TTAGGGTTT
14658763 TTA
1 TTA
14658766 TTGTGTTAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.33, T:0.53
Consensus pattern (9 bp):
TTAGGGTTT
Found at i:14658772 original size:17 final size:18
Alignment explanation
Indices: 14658736--14658779 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
14658726 ATGTGTTATA
14658736 TTAGGGTTTTTAGGGTTG
1 TTAGGGTTTTTAGGGTTG
**
14658754 TTAGGGTTTTTATTG-TG
1 TTAGGGTTTTTAGGGTTG
14658771 TTAGGGTTT
1 TTAGGGTTT
14658780 AGGGTTATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.11, C:0.00, G:0.34, T:0.55
Consensus pattern (18 bp):
TTAGGGTTTTTAGGGTTG
Found at i:14661827 original size:32 final size:32
Alignment explanation
Indices: 14661791--14661866 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
14661781 TGTGGTTCTA
* *
14661791 TGAAATGATAACAAA-TATTAGCTTTC-ATTTTG
1 TGAAATGATAACAAATTA-CAAC-TTCAATTTTG
*
14661823 TGAAATGGTAACAAATTACAACTTCAATTTTG
1 TGAAATGATAACAAATTACAACTTCAATTTTG
14661855 TGAAATGATAAC
1 TGAAATGATAAC
14661867 GATAGGAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 3 0.08
32 33 0.87
33 2 0.05
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.36
Consensus pattern (32 bp):
TGAAATGATAACAAATTACAACTTCAATTTTG
Found at i:14662547 original size:36 final size:35
Alignment explanation
Indices: 14662475--14662547 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
14662465 TCAAAATTTC
*
14662475 ATTATTAACTTAACGATAAGATGACAAAAAATCAA
1 ATTATTAACTTAACGACAAGATGACAAAAAATCAA
* *
14662510 ATTATTAACTTTACGACAAGGTGACAAAAAAATCAA
1 ATTATTAACTTAACGACAAGATGAC-AAAAAATCAA
14662546 AT
1 AT
14662548 CTTAAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 22 0.65
36 12 0.35
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (35 bp):
ATTATTAACTTAACGACAAGATGACAAAAAATCAA
Found at i:14667336 original size:40 final size:40
Alignment explanation
Indices: 14667282--14667357 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
14667272 TCATCCCCGG
*
14667282 AAATCTTACCAGTGAATAGGTTCGAGTATTGTTTTCCCTA
1 AAATATTACCAGTGAATAGGTTCGAGTATTGTTTTCCCTA
* * *
14667322 AAATATTACTAGTGAATAGGTTCGGGTATTTTTTTC
1 AAATATTACCAGTGAATAGGTTCGAGTATTGTTTTC
14667358 TCAAAGCATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (40 bp):
AAATATTACCAGTGAATAGGTTCGAGTATTGTTTTCCCTA
Found at i:14673537 original size:48 final size:48
Alignment explanation
Indices: 14673480--14673612 Score: 176
Period size: 48 Copynumber: 2.8 Consensus size: 48
14673470 CTCACACGAT
* * *
14673480 AAGTACCTATACCATGGCCTGAAGCCAAATCAAGGTAACTTATCCCCG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAAATTATCCCCA
* * * ***
14673528 GAGTACCTATACCATGTCCCGAAGCCAAATTAAGGTAAATTATCTTTA
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAAATTATCCCCA
*
14673576 AAATACCTATACCATGGCCCGAAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTA
14673613 TAACTCACAC
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAAATTATCCCCA
Found at i:14685477 original size:18 final size:18
Alignment explanation
Indices: 14685456--14685491 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14685446 TCATATGTTC
14685456 GATAAAAATTGAATCATT
1 GATAAAAATTGAATCATT
14685474 GATAAAAATTGAATCATT
1 GATAAAAATTGAATCATT
14685492 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (18 bp):
GATAAAAATTGAATCATT
Found at i:14696458 original size:28 final size:28
Alignment explanation
Indices: 14696418--14696480 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 28
14696408 TGATTCTACT
*
14696418 ATTTATCTAACC-TGCAACATGTAAATCA
1 ATTTATCTAACCTTG-AACATGTAAACCA
14696446 ATTTATCTAACCTTGAACATGTAAACCA
1 ATTTATCTAACCTTGAACATGTAAACCA
14696474 ATTTATC
1 ATTTATC
14696481 ATTAATAGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
28 31 0.94
29 2 0.06
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (28 bp):
ATTTATCTAACCTTGAACATGTAAACCA
Found at i:14696761 original size:75 final size:75
Alignment explanation
Indices: 14696657--14696900 Score: 262
Period size: 75 Copynumber: 3.3 Consensus size: 75
14696647 TGCTCCTAGC
* *
14696657 GCTAGTCGAATTAACCGACAGTATTGAATGTGAGCCTAGCTCTATTTGGATAAACCAACGATATT
1 GCTAGTCGGATTAACCGACAATATTGAATGTGAGCCTAGCTCTATTTGGATAAACCAACGATATT
* *
14696722 TTCATCCAGT
66 TACACCCAGT
* * * * *
14696732 GCTACTCGGATTAATCGACAATATTGAATGTGAGCCCAGTTATAGTTT-GATAAACCAACGATAT
1 GCTAGTCGGATTAACCGACAATATTGAATGTGAGCCTAGCTCTA-TTTGGATAAACCAACGATAT
*
14696796 TTGCACCCAGT
65 TTACACCCAGT
* * * * * *
14696807 GCTAGTCGG-GTATACCGACGAT-TAT-AATTCTGAGCCTAGCTCTAGTTGGATAAACCAACAAA
1 GCTAGTCGGATTA-ACCGACAATAT-TGAA-TGTGAGCCTAGCTCTATTTGGATAAACCAACGAT
*
14696869 AATTACACCCAGT
63 ATTTACACCCAGT
*
14696882 GCTAGTCGGATAAACCGAC
1 GCTAGTCGGATTAACCGAC
14696901 GGGTGTGTGC
Statistics
Matches: 139, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
74 7 0.05
75 128 0.92
76 4 0.03
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (75 bp):
GCTAGTCGGATTAACCGACAATATTGAATGTGAGCCTAGCTCTATTTGGATAAACCAACGATATT
TACACCCAGT
Found at i:14699776 original size:22 final size:21
Alignment explanation
Indices: 14699746--14699792 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
14699736 TACAAATTAA
14699746 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
14699768 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
14699789 ATCT
1 ATCT
14699793 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:14699798 original size:19 final size:19
Alignment explanation
Indices: 14699763--14699841 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
14699753 AGATTACAAG
14699763 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
14699784 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
14699801 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14699820 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14699839 ATC
1 ATC
14699842 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14699818 original size:36 final size:38
Alignment explanation
Indices: 14699763--14699835 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
14699753 AGATTACAAG
14699763 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
14699801 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
14699836 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:14699850 original size:36 final size:35
Alignment explanation
Indices: 14699764--14699851 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
14699754 GATTACAAGA
14699764 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
14699800 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
14699836 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
14699852 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:14701844 original size:13 final size:14
Alignment explanation
Indices: 14701819--14701847 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14701809 ATTTAAACCG
14701819 TTTTAAAACCCCTT
1 TTTTAAAACCCCTT
14701833 TTTTAAAA-CCCTT
1 TTTTAAAACCCCTT
14701846 TT
1 TT
14701848 ATCCTGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTTAAAACCCCTT
Found at i:14702415 original size:21 final size:21
Alignment explanation
Indices: 14702398--14702439 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
14702388 TTCTTTGTAT
*
14702398 TTTGGGCTTGTACTTTTGTTA
1 TTTGGGCTTGTAATTTTGTTA
14702419 TTTGGGCTTGTAATTTTGTTA
1 TTTGGGCTTGTAATTTTGTTA
14702440 ATGGACTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.12, C:0.07, G:0.24, T:0.57
Consensus pattern (21 bp):
TTTGGGCTTGTAATTTTGTTA
Found at i:14703571 original size:15 final size:15
Alignment explanation
Indices: 14703543--14703597 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
14703533 AATACATGTT
*
14703543 AAATCAACTAAAATTA
1 AAATTAACT-AAATTA
14703559 AAATTAACTAAATATA
1 AAATTAACTAAAT-TA
14703575 AAATATAA-TAAATTAA
1 AAAT-TAACTAAATT-A
14703591 AAATTAA
1 AAATTAA
14703598 AATATATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
15 8 0.23
16 24 0.69
17 3 0.09
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATTAACTAAATTA
Found at i:14703598 original size:22 final size:24
Alignment explanation
Indices: 14703559--14703603 Score: 67
Period size: 22 Copynumber: 1.9 Consensus size: 24
14703549 ACTAAAATTA
14703559 AAATTAACTAAATATAAAATATAAT
1 AAATTAAC-AAATATAAAATATAAT
14703584 AAATTAA-AAAT-TAAAATATA
1 AAATTAACAAATATAAAATATA
14703604 TTTAATCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
23 4 0.20
25 7 0.35
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
AAATTAACAAATATAAAATATAAT
Found at i:14705228 original size:7 final size:7
Alignment explanation
Indices: 14705216--14705263 Score: 80
Period size: 7 Copynumber: 7.0 Consensus size: 7
14705206 TGATATAAGC
14705216 TCTTTTT
1 TCTTTTT
14705223 TCTTTTT
1 TCTTTTT
*
14705230 TCTTCTT
1 TCTTTTT
14705237 TCTTTTT
1 TCTTTTT
14705244 TCTTTTT
1 TCTTTTT
14705251 TCTTTTT
1 TCTTTTT
14705258 T-TTTTT
1 TCTTTTT
14705264 CACTTTCTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
6 5 0.13
7 34 0.87
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TCTTTTT
Found at i:14705269 original size:14 final size:14
Alignment explanation
Indices: 14705216--14705275 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
14705206 TGATATAAGC
*
14705216 TCTTTTTTCTTTTT
1 TCTTTTTACTTTTT
14705230 TCTTCTTT-CTTTTT
1 TCTT-TTTACTTTTT
*
14705244 TCTTTTTTCTTTTT
1 TCTTTTTACTTTTT
*
14705258 T-TTTTTCACTTTCT
1 TCTTTTT-ACTTTTT
14705272 TCTT
1 TCTT
14705276 GAAAACCCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
13 8 0.20
14 27 0.68
15 5 0.12
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (14 bp):
TCTTTTTACTTTTT
Found at i:14705269 original size:21 final size:21
Alignment explanation
Indices: 14705218--14705275 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
14705208 ATATAAGCTC
*
14705218 TTTTTTCTTTTTTCTTCTTTC
1 TTTTTCCTTTTTTCTTCTTTC
* *
14705239 TTTTTTCTTTTTTCTT-TTTT
1 TTTTTCCTTTTTTCTTCTTTC
*
14705259 TTTTTCACTTTCTTCTT
1 TTTTTC-CTTTTTTCTT
14705276 GAAAACCCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 8 0.24
21 25 0.76
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTCCTTTTTTCTTCTTTC
Found at i:14706287 original size:31 final size:31
Alignment explanation
Indices: 14706247--14706314 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
14706237 ATATCTACAG
14706247 TTTT-TTTAATCTTATATTATCTATAATATT
1 TTTTCTTTAATCTTATATTATCTATAATATT
14706277 TTTTCTTTAATCTTATATTATCTATAATATT
1 TTTTCTTTAATCTTATATTATCTATAATATT
14706308 TTTTCTT
1 TTTTCTT
14706315 ATATAATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 33 0.89
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (31 bp):
TTTTCTTTAATCTTATATTATCTATAATATT
Found at i:14715959 original size:26 final size:27
Alignment explanation
Indices: 14715896--14715959 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
14715886 ATATGAATGC
14715896 ATTTTAATTTTAATATTTTGAATTTCA
1 ATTTTAATTTTAATATTTTGAATTTCA
* * * *
14715923 A--TGAACTTTTTATATTTTTAATTTTA
1 ATTTTAA-TTTTAATATTTTGAATTTCA
14715949 ATTTTAATTTT
1 ATTTTAATTTT
14715960 TTATAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
25 3 0.10
26 18 0.62
27 5 0.17
28 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (27 bp):
ATTTTAATTTTAATATTTTGAATTTCA
Found at i:14716525 original size:20 final size:19
Alignment explanation
Indices: 14716476--14716525 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
14716466 TTTATCATAG
**
14716476 AAATAAATATTTTTTAATTA
1 AAAT-AATATTTTTTAAGGA
14716496 AAATAA-ATTTTTTAAAGGA
1 AAATAATATTTTTT-AAGGA
14716515 AAATAATATTT
1 AAATAATATTT
14716526 ATCTTAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 7 0.27
19 11 0.42
20 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
AAATAATATTTTTTAAGGA
Found at i:14716800 original size:13 final size:13
Alignment explanation
Indices: 14716784--14716810 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14716774 TAATTAAAGG
14716784 GTTAAAATTTAAA
1 GTTAAAATTTAAA
14716797 GTTAAAATTTAAA
1 GTTAAAATTTAAA
14716810 G
1 G
14716811 ATGATAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:14716907 original size:43 final size:42
Alignment explanation
Indices: 14716860--14716999 Score: 173
Period size: 43 Copynumber: 3.4 Consensus size: 42
14716850 AAAACTTTGG
* * * *
14716860 ATCATAACTTACATAATTTATATAATACAAAAATATGTATTAT
1 ATCATAACTTACATAACTTACATAATAC-AAAATATATATCAT
*
14716903 ATCATAAATTACATAACTTACATAGAT-----ATATATATCAT
1 ATCATAACTTACATAACTTACATA-ATACAAAATATATATCAT
14716941 ATCATAACTTACATAACTTACATAATACATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAATACA-AAATATATATCAT
14716984 ATCATAACTTACATAA
1 ATCATAACTTACATAA
14717000 AATTTTGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
37 2 0.02
38 32 0.38
43 48 0.57
44 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.36
Consensus pattern (42 bp):
ATCATAACTTACATAACTTACATAATACAAAATATATATCAT
Found at i:14723030 original size:43 final size:43
Alignment explanation
Indices: 14722969--14723050 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
14722959 GTTTTTTCAC
14722969 AAACGCCGCCAAAGAACATAACTTTTAGCAGCGCTTTTACTAA
1 AAACGCCGCCAAAGAACATAACTTTTAGCAGCGCTTTTACTAA
* * * * *
14723012 AAACGTCGCTAAAGAACATGACTTTTAGCGGCGTTTTTA
1 AAACGCCGCCAAAGAACATAACTTTTAGCAGCGCTTTTA
14723051 GGGAAAGAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (43 bp):
AAACGCCGCCAAAGAACATAACTTTTAGCAGCGCTTTTACTAA
Found at i:14723372 original size:61 final size:61
Alignment explanation
Indices: 14723243--14723373 Score: 151
Period size: 61 Copynumber: 2.1 Consensus size: 61
14723233 CAATCTCAAT
* * *
14723243 TAGTTAGGTGACCAAATTAAAAAATTTGATAGTTAAGTAATCCAAAAAAGAAAAGAGGTAA
1 TAGTTGGGTGACCAAATTAAAAAATTTGATAGTCAAGTAATCCAAAAAAGAAAAGAGGCAA
** *
14723304 TAGTTGGGTGACCAAATTAAACAAA-TTGATAGTCGGGTGA-CCAAAAGAAGAAAATG-GGCAA
1 TAGTTGGGTGACCAAATTAAA-AAATTTGATAGTCAAGTAATCCAAAA-AAGAAAA-GAGGCAA
*
14723365 TATTTGGGT
1 TAGTTGGGT
14723374 AAATTGTGGT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
60 6 0.10
61 50 0.83
62 4 0.07
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.24
Consensus pattern (61 bp):
TAGTTGGGTGACCAAATTAAAAAATTTGATAGTCAAGTAATCCAAAAAAGAAAAGAGGCAA
Found at i:14730618 original size:50 final size:50
Alignment explanation
Indices: 14730562--14730662 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
14730552 AGTACAAAAT
14730562 TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
1 TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
*
14730612 TAGTCGAAAGCTCTAGAAGAGGTAATATATTAATATTTTGTAATGGTTAA
1 TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
14730662 T
1 T
14730663 CCATTGGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.37
Consensus pattern (50 bp):
TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
Found at i:14735779 original size:22 final size:22
Alignment explanation
Indices: 14735744--14735786 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14735734 CTGCGATATT
* *
14735744 TACGGCCTTTAGCCATCCTGTC
1 TACGGCATTGAGCCATCCTGTC
*
14735766 TACGGCATTGAGCCGTCCTGT
1 TACGGCATTGAGCCATCCTGT
14735787 TGACTTAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.33, G:0.23, T:0.30
Consensus pattern (22 bp):
TACGGCATTGAGCCATCCTGTC
Found at i:14735954 original size:27 final size:27
Alignment explanation
Indices: 14735906--14735958 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
14735896 GCATCTGATA
*
14735906 CTGATTCTGTACTGAGCTTAGGCCCAC
1 CTGATTCTGTAATGAGCTTAGGCCCAC
*
14735933 CTGATTCTGTTAATGGGC-TAGGCCCA
1 CTGATTCTG-TAATGAGCTTAGGCCCA
14735959 ACTGTTACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.19, C:0.26, G:0.25, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTAATGAGCTTAGGCCCAC
Found at i:14746705 original size:6 final size:7
Alignment explanation
Indices: 14746694--14746720 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14746684 AACTAAAACT
14746694 GAAAAAA
1 GAAAAAA
14746701 GAAAAAA
1 GAAAAAA
14746708 GAAAAAA
1 GAAAAAA
14746715 GAAAAA
1 GAAAAA
14746721 CTTATTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:14748073 original size:79 final size:77
Alignment explanation
Indices: 14747971--14748231 Score: 324
Period size: 79 Copynumber: 3.3 Consensus size: 77
14747961 ACAAAGTTGT
* * * * * *
14747971 GTTTCCAATAATATTTTTAGTATTTTGTTGCAAAATTGGTTTTCCAATAGGAATTATAGTAATAG
1 GTTTCCAATAAGAATTTTAGTATTTAGTTACAAAATTGATTTTCCAATAGGAATT-TATTAATAG
14748036 TTGAGAGATTATG
65 TTGAGAGATTATG
* * ** *
14748049 GTTTCCAATTAAGAATTTTAGTATTTGGTTACAAAATTGATTTTCCATTAAAAAATTTATTAGTA
1 GTTTCCAA-TAAGAATTTTAGTATTTAGTTACAAAATTGATTTTCCAAT-AGGAATTTATTAATA
14748114 GTTGAGAGATTATG
64 GTTGAGAGATTATG
* * *
14748128 ATTTCCAATTAAGAATTTTAGTATTTAGTTATAAAATTGATTTCCCAATAGGAATTTTATTAATA
1 GTTTCCAA-TAAGAATTTTAGTATTTAGTTACAAAATTGATTTTCCAATAGGAA-TTTATTAATA
*
14748193 GTTGAGAGATTATT
64 GTTGAGAGATTATG
* *
14748207 GTTTACAATAAGATTTTTAGTATTT
1 GTTTCCAATAAGAATTTTAGTATTT
14748232 GGATTTTTTA
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 27 0.17
79 126 0.80
80 5 0.03
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.44
Consensus pattern (77 bp):
GTTTCCAATAAGAATTTTAGTATTTAGTTACAAAATTGATTTTCCAATAGGAATTTATTAATAGT
TGAGAGATTATG
Found at i:14748145 original size:39 final size:38
Alignment explanation
Indices: 14748011--14748228 Score: 101
Period size: 39 Copynumber: 5.6 Consensus size: 38
14748001 CAAAATTGGT
* * * *
14748011 TTTCCAATAGGAATTATAGTAATAGTTGAGAGATTATGG
1 TTTCCAATAAGAATT-TATTAGTAGTTGAGAGATTATGA
* * **
14748050 TTTCCAATTAAGAA-TT-TTAGTATTTG-GTTACAAAATTGA
1 TTTCCAA-TAAGAATTTATTAGTAGTTGAG--AGATTA-TGA
* *
14748089 TTTTCCATTAAAAAATTTATTAGTAGTTGAGAGATTATGA
1 -TTTCCAAT-AAGAATTTATTAGTAGTTGAGAGATTATGA
* * * * *
14748129 TTTCCAATTAAGAATTTTAGTATTTAGTT-ATAAAAT-TGA
1 TTTCCAA-TAAGAA-TTTATTA-GTAGTTGAGAGATTATGA
* *
14748168 TTTCCCAATAGGAATTTTATTAATAGTTGAGAGATTATTG-
1 TTT-CCAATAAGAA-TTTATTAGTAGTTGAGAGATTA-TGA
*
14748208 TTTACAATAAG-ATTT-TTAGTA
1 TTTCCAATAAGAATTTATTAGTA
14748229 TTTGGATTTT
Statistics
Matches: 133, Mismatches: 30, Indels: 35
0.67 0.15 0.18
Matches are distributed among these distances:
36 6 0.05
37 10 0.08
38 10 0.08
39 49 0.37
40 36 0.27
41 12 0.09
42 9 0.07
43 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (38 bp):
TTTCCAATAAGAATTTATTAGTAGTTGAGAGATTATGA
Found at i:14749300 original size:15 final size:16
Alignment explanation
Indices: 14749280--14749310 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14749270 TAACTTGAAA
14749280 ATAATAA-GATAAAAT
1 ATAATAATGATAAAAT
14749295 ATAATAATGATAAAAT
1 ATAATAATGATAAAAT
14749311 GAGATCCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (16 bp):
ATAATAATGATAAAAT
Found at i:14762690 original size:15 final size:15
Alignment explanation
Indices: 14762670--14762708 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
14762660 GATGAGGTTA
*
14762670 TCGTGGTGG-TCTGTG
1 TCGTGGTGGCTATG-G
14762685 TCGTGGTGGCTATGG
1 TCGTGGTGGCTATGG
14762700 TCGTGGTGG
1 TCGTGGTGG
14762709 AGCAAGACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 19 0.86
16 3 0.14
ACGTcount: A:0.03, C:0.13, G:0.49, T:0.36
Consensus pattern (15 bp):
TCGTGGTGGCTATGG
Found at i:14762947 original size:17 final size:16
Alignment explanation
Indices: 14762916--14762969 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
14762906 AATAAAGTAA
*
14762916 AAAATAAATGCAAAAAT
1 AAAATAAAAG-AAAAAT
*
14762933 AAAATAAAAGAAAAAGA
1 AAAATAAAAGAAAAA-T
*
14762950 AAAACAAATAGAAAAAT
1 AAAATAAA-AGAAAAAT
14762967 AAA
1 AAA
14762970 TGGACTCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 5 0.16
17 19 0.61
18 7 0.23
ACGTcount: A:0.78, C:0.04, G:0.07, T:0.11
Consensus pattern (16 bp):
AAAATAAAAGAAAAAT
Found at i:14780635 original size:10 final size:10
Alignment explanation
Indices: 14780620--14780662 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
14780610 GCTATTAATT
14780620 CATACCAAAA
1 CATACCAAAA
14780630 CATACCAAAA
1 CATACCAAAA
*
14780640 CATGAGCCAAAGT
1 CAT-A-CCAAA-A
14780653 CATACCAAAA
1 CATACCAAAA
14780663 ATAAGATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 13 0.46
11 6 0.21
12 6 0.21
13 3 0.11
ACGTcount: A:0.53, C:0.28, G:0.07, T:0.12
Consensus pattern (10 bp):
CATACCAAAA
Found at i:14783974 original size:40 final size:40
Alignment explanation
Indices: 14783919--14784000 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
14783909 CCCACTTCGA
14783919 GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
1 GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
14783959 GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
1 GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
14783999 GA
1 GA
14784001 ACTTTGTAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (40 bp):
GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
Found at i:14789230 original size:21 final size:22
Alignment explanation
Indices: 14789182--14789240 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 22
14789172 CATTGAAGAG
*
14789182 TGTTGTGGCTGCATCT-GATTC
1 TGTTGTGGATGCATCTGGATTC
* *
14789203 TGGTGTGGATGCATCTGGCTT-
1 TGTTGTGGATGCATCTGGATTC
14789224 TGTTGTGGATGCATCTG
1 TGTTGTGGATGCATCTG
14789241 TGTATGCTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 30 0.91
22 3 0.09
ACGTcount: A:0.10, C:0.15, G:0.34, T:0.41
Consensus pattern (22 bp):
TGTTGTGGATGCATCTGGATTC
Found at i:14792403 original size:24 final size:24
Alignment explanation
Indices: 14792370--14792420 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
14792360 AGCTAGAGGG
14792370 GAAGAGAGAAA-AGAGAA-GAAGAAA
1 GAAGAGAGAAACA-A-AATGAAGAAA
*
14792394 GAAGATAGAAACAAAATGAAGAAA
1 GAAGAGAGAAACAAAATGAAGAAA
14792418 GAA
1 GAA
14792421 AGAATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 2 0.08
24 21 0.88
25 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.27, T:0.04
Consensus pattern (24 bp):
GAAGAGAGAAACAAAATGAAGAAA
Found at i:14795968 original size:21 final size:22
Alignment explanation
Indices: 14795944--14795990 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
14795934 ACTAAATACT
*
14795944 TTGTAAAAATTCTTAA-AAAAA
1 TTGTAAAAATTATTAATAAAAA
*
14795965 TTGTAAAAGTTATTAATTAAAAA
1 TTGTAAAAATTATTAA-TAAAAA
14795988 TTG
1 TTG
14795991 CAAATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
23 8 0.36
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (22 bp):
TTGTAAAAATTATTAATAAAAA
Found at i:14803669 original size:43 final size:43
Alignment explanation
Indices: 14803499--14803669 Score: 145
Period size: 43 Copynumber: 4.0 Consensus size: 43
14803489 ACATAAACTC
* * * *
14803499 ATACAATGCC-ATATCCCAGATATGTTCTTACATGTTATCAC-
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
* ** * * * * * *
14803540 ATATCGATGCCTCTGTCCAAGATAGGGTCTTACACGAAATC-GA
1 ATA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
*
14803583 ATA-ATGATGCCAATGTCCCAGACATGGTCTTAC-TCGTATTCACA
1 ATACA--ATGCCAATGTCCCAGACATGGTCTTACAT-GTAATCACA
14803627 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
14803670 TCTCGATAAC
Statistics
Matches: 100, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
41 3 0.03
42 6 0.06
43 85 0.85
44 5 0.05
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
Found at i:14820571 original size:63 final size:63
Alignment explanation
Indices: 14820472--14820592 Score: 199
Period size: 63 Copynumber: 1.9 Consensus size: 63
14820462 ATAAATCTAT
*
14820472 TCAACCAATATTCCATTTAGGCACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
1 TCAACCAATATTCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
* *
14820535 TCAACCAATATGT-CATTTCGACACCTCAATCACAACCAAGCATTCATGCTTACATTTG
1 TCAACCAATAT-TCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTG
14820593 CCTCAAAATG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 53 0.98
64 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.30
Consensus pattern (63 bp):
TCAACCAATATTCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
Found at i:14822146 original size:39 final size:40
Alignment explanation
Indices: 14822033--14822224 Score: 186
Period size: 39 Copynumber: 4.9 Consensus size: 40
14822023 ACAAAATTTT
*
14822033 ATAAGAGCTGATCCAACTGAAACACGCCAAACAGAAGCTC
1 ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
* * *
14822073 ATAAGAGC--ATCCAACCGAAATATGCCAAATAGAAGCTC
1 ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
*
14822111 ATAAGAGCTGGTCC-ACCGAAAACACGCCAAA-AGAAGCTC
1 ATAAGAGCTGATCCAACCG-AAACACGCCAAACAGAAGCTC
*
14822150 ATAAGAGCT-AGTCC-ACTCGAAA-ATTGCC-AACAGAAGCTC
1 ATAAGAGCTGA-TCCAAC-CGAAACA-CGCCAAACAGAAGCTC
* * * *
14822189 ATAAGAGCTTATCC-GCCTGAATCATGCCAAACAGAA
1 ATAAGAGCTGATCCAACC-GAAACACGCCAAACAGAA
14822225 AGTATAAAAC
Statistics
Matches: 130, Mismatches: 11, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
38 38 0.29
39 60 0.46
40 32 0.25
ACGTcount: A:0.41, C:0.26, G:0.18, T:0.15
Consensus pattern (40 bp):
ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
Found at i:14822218 original size:78 final size:78
Alignment explanation
Indices: 14822033--14822224 Score: 241
Period size: 78 Copynumber: 2.5 Consensus size: 78
14822023 ACAAAATTTT
*
14822033 ATAAGAGCTGATCCAACTGAAACACGCCAAACAGAAGCTCATAAGAGCATCCAACCGAAATATGC
1 ATAAGAGCTGATCCACCTGAAACACGCCAAACAGAAGCTCATAAGAGCATCCAACCGAAATATGC
*
14822098 CAAATAGAAGCTC
66 CAAACAGAAGCTC
*
14822111 ATAAGAGCTGGTCCACC-GAAAACACGCCAAA-AGAAGCTCATAAGAGCTAGTCC-ACTCGAAA-
1 ATAAGAGCTGATCCACCTG-AAACACGCCAAACAGAAGCTCATAAGAGC-A-TCCAAC-CGAAAT
14822172 ATTGCC-AACAGAAGCTC
62 A-TGCCAAACAGAAGCTC
* * * *
14822189 ATAAGAGCTTATCCGCCTGAATCATGCCAAACAGAA
1 ATAAGAGCTGATCCACCTGAAACACGCCAAACAGAA
14822225 AGTATAAAAC
Statistics
Matches: 99, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
77 17 0.17
78 65 0.66
79 17 0.17
ACGTcount: A:0.41, C:0.26, G:0.18, T:0.15
Consensus pattern (78 bp):
ATAAGAGCTGATCCACCTGAAACACGCCAAACAGAAGCTCATAAGAGCATCCAACCGAAATATGC
CAAACAGAAGCTC
Found at i:14824477 original size:43 final size:43
Alignment explanation
Indices: 14824427--14824566 Score: 167
Period size: 43 Copynumber: 3.3 Consensus size: 43
14824417 TATCCTAGAT
* * *
14824427 ATGGTCTTACAGGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * * *
14824470 AGGGTCTTACACGAAATTGA-ATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAA-TCACATATCGATGCCAATGTCCCAGAC
*
14824513 ATGGTCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
14824556 ATGGACTTACA
1 ATGGTCTTACA
14824567 TGCCAATGTC
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
42 3 0.04
43 76 0.94
44 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:14829507 original size:63 final size:63
Alignment explanation
Indices: 14829408--14829528 Score: 199
Period size: 63 Copynumber: 1.9 Consensus size: 63
14829398 ATAAATCTAT
*
14829408 TCAACCAATATTCCATTTAGGCACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
1 TCAACCAATATTCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
* *
14829471 TCAACCAATATGT-CATTTCGACACCTCAATCACAACCAAGCATTCATGCTTACATTTG
1 TCAACCAATAT-TCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTG
14829529 CCTCAAAATG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 53 0.98
64 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.30
Consensus pattern (63 bp):
TCAACCAATATTCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
Found at i:14831082 original size:39 final size:40
Alignment explanation
Indices: 14830969--14831160 Score: 186
Period size: 39 Copynumber: 4.9 Consensus size: 40
14830959 ACAAAATTTT
*
14830969 ATAAGAGCTGATCCAACTGAAACACGCCAAACAGAAGCTC
1 ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
* * *
14831009 ATAAGAGC--ATCCAACCGAAATATGCCAAATAGAAGCTC
1 ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
*
14831047 ATAAGAGCTGGTCC-ACCGAAAACACGCCAAA-AGAAGCTC
1 ATAAGAGCTGATCCAACCG-AAACACGCCAAACAGAAGCTC
*
14831086 ATAAGAGCT-AGTCC-ACTCGAAA-ATTGCC-AACAGAAGCTC
1 ATAAGAGCTGA-TCCAAC-CGAAACA-CGCCAAACAGAAGCTC
* * * *
14831125 ATAAGAGCTTATCC-GCCTGAATCATGCCAAACAGAA
1 ATAAGAGCTGATCCAACC-GAAACACGCCAAACAGAA
14831161 AGTATAAAAC
Statistics
Matches: 130, Mismatches: 11, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
38 38 0.29
39 60 0.46
40 32 0.25
ACGTcount: A:0.41, C:0.26, G:0.18, T:0.15
Consensus pattern (40 bp):
ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
Found at i:14831154 original size:78 final size:78
Alignment explanation
Indices: 14830969--14831160 Score: 241
Period size: 78 Copynumber: 2.5 Consensus size: 78
14830959 ACAAAATTTT
*
14830969 ATAAGAGCTGATCCAACTGAAACACGCCAAACAGAAGCTCATAAGAGCATCCAACCGAAATATGC
1 ATAAGAGCTGATCCACCTGAAACACGCCAAACAGAAGCTCATAAGAGCATCCAACCGAAATATGC
*
14831034 CAAATAGAAGCTC
66 CAAACAGAAGCTC
*
14831047 ATAAGAGCTGGTCCACC-GAAAACACGCCAAA-AGAAGCTCATAAGAGCTAGTCC-ACTCGAAA-
1 ATAAGAGCTGATCCACCTG-AAACACGCCAAACAGAAGCTCATAAGAGC-A-TCCAAC-CGAAAT
14831108 ATTGCC-AACAGAAGCTC
62 A-TGCCAAACAGAAGCTC
* * * *
14831125 ATAAGAGCTTATCCGCCTGAATCATGCCAAACAGAA
1 ATAAGAGCTGATCCACCTGAAACACGCCAAACAGAA
14831161 AGTATAAAAC
Statistics
Matches: 99, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
77 17 0.17
78 65 0.66
79 17 0.17
ACGTcount: A:0.41, C:0.26, G:0.18, T:0.15
Consensus pattern (78 bp):
ATAAGAGCTGATCCACCTGAAACACGCCAAACAGAAGCTCATAAGAGCATCCAACCGAAATATGC
CAAACAGAAGCTC
Found at i:14833418 original size:43 final size:43
Alignment explanation
Indices: 14833368--14833507 Score: 167
Period size: 43 Copynumber: 3.3 Consensus size: 43
14833358 TATCCTAGAT
* * *
14833368 ATGGTCTTACAGGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * * *
14833411 AGGGTCTTACACGAAATTGA-ATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAA-TCACATATCGATGCCAATGTCCCAGAC
*
14833454 ATGGTCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
14833497 ATGGACTTACA
1 ATGGTCTTACA
14833508 TGCCAATGTC
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
42 3 0.04
43 76 0.94
44 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:14843221 original size:12 final size:12
Alignment explanation
Indices: 14843204--14843229 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14843194 GTGACAAACT
14843204 AGTTCCATACCC
1 AGTTCCATACCC
14843216 AGTTCCATACCC
1 AGTTCCATACCC
14843228 AG
1 AG
14843230 CAAAATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.38, G:0.12, T:0.23
Consensus pattern (12 bp):
AGTTCCATACCC
Found at i:14847200 original size:13 final size:13
Alignment explanation
Indices: 14847182--14847206 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14847172 GGATGGAAAC
14847182 ACGGCCGTGCGAT
1 ACGGCCGTGCGAT
14847195 ACGGCCGTGCGA
1 ACGGCCGTGCGA
14847207 AAAAAGGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
ACGGCCGTGCGAT
Found at i:14855555 original size:23 final size:22
Alignment explanation
Indices: 14855521--14855581 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
14855511 GTAATTAGGT
14855521 TTAGAATTAAAAAATTAAGAATAAA
1 TTAGAA-TAAAAAATTAA-AAT-AA
*
14855546 TTA-AATAAAATATTAAAATAA
1 TTAGAATAAAAAATTAAAATAA
*
14855567 TTAGAATTAAAAATT
1 TTAGAATAAAAAATT
14855582 TTAGGTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 5 0.16
22 12 0.38
23 10 0.31
24 2 0.06
25 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
TTAGAATAAAAAATTAAAATAA
Found at i:14862484 original size:28 final size:27
Alignment explanation
Indices: 14862409--14862488 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
14862399 ACCCCAAGAC
* **
14862409 GGGTGAAATGACCAAAATACCCCTAAA
1 GGGTAAAATGACCATTATACCCCTAAA
* * *
14862436 GGGTAAAATGACTATTTTACCCCTAATT
1 GGGTAAAATGACCATTATACCCCTAA-A
* *
14862464 GGTTAAAATGACCGTTATACCCCTA
1 GGGTAAAATGACCATTATACCCCTA
14862489 GAGGTGGATT
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
27 21 0.50
28 21 0.50
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (27 bp):
GGGTAAAATGACCATTATACCCCTAAA
Found at i:14862642 original size:26 final size:27
Alignment explanation
Indices: 14862612--14862663 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
14862602 TGGAGGAAGT
14862612 TACTG-TACTGGTGGCTTTGCCACATA
1 TACTGTTACTGGTGGCTTTGCCACATA
*
14862638 TACTGTTACTGGTGGTTTTGCCACAT
1 TACTGTTACTGGTGGCTTTGCCACAT
14862664 TTATTGATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTTGCCACATA
Found at i:14862674 original size:27 final size:27
Alignment explanation
Indices: 14862612--14862676 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
14862602 TGGAGGAAGT
14862612 TACTG-TACTGGTGGCTTTGCCACATA
1 TACTGATACTGGTGGCTTTGCCACATA
* * *
14862638 TACTGTTACTGGTGGTTTTGCCACATT
1 TACTGATACTGGTGGCTTTGCCACATA
*
14862665 TATTGATACTGG
1 TACTGATACTGG
14862677 CAGCTTTACT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.15
27 29 0.85
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.40
Consensus pattern (27 bp):
TACTGATACTGGTGGCTTTGCCACATA
Found at i:14872009 original size:13 final size:13
Alignment explanation
Indices: 14871991--14872016 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14871981 GGTTTTCTCC
14871991 AAAATGAAAATGA
1 AAAATGAAAATGA
14872004 AAAATGAAAATGA
1 AAAATGAAAATGA
14872017 CTTGGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:14887255 original size:17 final size:19
Alignment explanation
Indices: 14887227--14887261 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14887217 GGATTACTCG
14887227 TGTGGACCCATAT-GCCCT
1 TGTGGACCCATATAGCCCT
14887245 TGTGG-CCCATATAGCCC
1 TGTGGACCCATATAGCCC
14887262 AAATTAGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.17, C:0.34, G:0.23, T:0.26
Consensus pattern (19 bp):
TGTGGACCCATATAGCCCT
Found at i:14895559 original size:25 final size:26
Alignment explanation
Indices: 14895531--14895590 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
14895521 TAATTAATAT
*
14895531 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
* *
14895556 AAAA-ATTAAATTATTAAATAAAATTT
1 AAAATATT-AATAATTAAATAAAATTG
14895582 AAAAT-TTAA
1 AAAATATTAA
14895591 GAGAAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:14896466 original size:29 final size:30
Alignment explanation
Indices: 14896407--14896467 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
14896397 GCCTTTTGAA
* * *
14896407 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCAACCAAATTTT
*
14896437 AATATTTATAAAAAGA-GCAACCAAATTTT
1 AATATTTACAAAAAGAGGCAACCAAATTTT
14896466 AA
1 AA
14896468 AAATAGTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCAACCAAATTTT
Found at i:14901348 original size:20 final size:20
Alignment explanation
Indices: 14901323--14901363 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14901313 GTTGGTTTGA
14901323 AGACTATTACTATAATGTAT
1 AGACTATTACTATAATGTAT
14901343 AGACTATTACTATAATGTAT
1 AGACTATTACTATAATGTAT
14901363 A
1 A
14901364 TGAGACTTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (20 bp):
AGACTATTACTATAATGTAT
Found at i:14901482 original size:49 final size:49
Alignment explanation
Indices: 14901402--14901500 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
14901392 AGAAGATAGT
* *
14901402 TATAATCAGTTTGTAATTTGATATTTTCTTGTCTAAATGTTATTGAATG
1 TATAATCAGTTTGTAATTTGATACTTGCTTGTCTAAATGTTATTGAATG
14901451 TATAATCAGTTTGTAATTTGATACTTGCTTGTCTAAATGTTATTGAATG
1 TATAATCAGTTTGTAATTTGATACTTGCTTGTCTAAATGTTATTGAATG
14901500 T
1 T
14901501 GATGAATTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.49
Consensus pattern (49 bp):
TATAATCAGTTTGTAATTTGATACTTGCTTGTCTAAATGTTATTGAATG
Found at i:14902916 original size:46 final size:46
Alignment explanation
Indices: 14902860--14903030 Score: 218
Period size: 46 Copynumber: 3.7 Consensus size: 46
14902850 TCTCGTAGCT
14902860 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACGTCACGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCACGAGGCC
* * *
14902906 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCACGAGGCC
* * * * * * *
14902952 AATGCCATGTCCTAGACATGTTCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACATG-TCTTACACTAGCTCTCGTCACGAGGCC
14903000 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
14903031 ACGTAAATGA
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
46 55 0.52
47 29 0.27
48 22 0.21
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCACGAGGCC
Found at i:14912831 original size:13 final size:13
Alignment explanation
Indices: 14912813--14912838 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14912803 CATACATCTT
14912813 TTAAATGTAGCAG
1 TTAAATGTAGCAG
14912826 TTAAATGTAGCAG
1 TTAAATGTAGCAG
14912839 GTGCATTACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
TTAAATGTAGCAG
Found at i:14916355 original size:41 final size:41
Alignment explanation
Indices: 14916306--14916386 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
14916296 TGTGAGAAGA
*
14916306 ATTATTTATGAATGCTATATAAAACACTTTGGTGAAGAAAG
1 ATTATTTATAAATGCTATATAAAACACTTTGGTGAAGAAAG
*
14916347 ATTATTTATAAATGCTATTTAAAACACTTTGGTGAAGAAA
1 ATTATTTATAAATGCTATATAAAACACTTTGGTGAAGAAA
14916387 AATATTTTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (41 bp):
ATTATTTATAAATGCTATATAAAACACTTTGGTGAAGAAAG
Found at i:14922306 original size:70 final size:70
Alignment explanation
Indices: 14922214--14922367 Score: 245
Period size: 70 Copynumber: 2.2 Consensus size: 70
14922204 CATTACAGGA
* * * *
14922214 CCAGTGTCCCAACATTGCATTTTGATTTTGAATTCTTTGGCTTTGAAGTTCGGTGTTGCGATACC
1 CCAGTGTCGCAACACTGCATTTTGATTTTGAATTCTTTGGCTTTAAAGTTCGGTGTTGCGACACC
14922279 ACATC
66 ACATC
* *
14922284 CCAGTGTCGCGACACTGTATTTTGATTTTGAATTCTTTGGCTTTAAAGTTCGGTGTTGCGACACC
1 CCAGTGTCGCAACACTGCATTTTGATTTTGAATTCTTTGGCTTTAAAGTTCGGTGTTGCGACACC
14922349 ACATC
66 ACATC
*
14922354 CTAGTGTCGCAACA
1 CCAGTGTCGCAACA
14922368 TTGCCATCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (70 bp):
CCAGTGTCGCAACACTGCATTTTGATTTTGAATTCTTTGGCTTTAAAGTTCGGTGTTGCGACACC
ACATC
Found at i:14926512 original size:38 final size:38
Alignment explanation
Indices: 14926461--14926544 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
14926451 ATTTGATGTG
* * *
14926461 TATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCAGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
* *
14926499 TATCCGGGATAAATCTCGCAGGCCTAGTGCTGGTATTA
1 TATCCAGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
*
14926537 TATTCAGG
1 TATCCAGG
14926545 CCTTTGTGCC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCAGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
Found at i:14926790 original size:43 final size:43
Alignment explanation
Indices: 14926537--14926777 Score: 383
Period size: 43 Copynumber: 5.6 Consensus size: 43
14926527 GCTGGTATTA
* * * *
14926537 TATTCAGGCCTTTGTGCCTAGTAGGCTTCGTGCCGGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
14926580 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
14926623 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
14926666 TATTCAGGCCTTCGTGCCCAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
14926709 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGAGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
14926752 TATTCGGGACTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
14926778 GTAATACCGG
Statistics
Matches: 182, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 182 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:14927220 original size:43 final size:44
Alignment explanation
Indices: 14927107--14927233 Score: 143
Period size: 45 Copynumber: 2.9 Consensus size: 44
14927097 TTGATTTGAT
* * * * *
14927107 TATTCGAGCCTTTGAGCTTAGCAGACTATAATGCCAGTGAGATAC
1 TATTCGGGCC-TTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
*
14927152 TATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTT-GAGCCTAGCAGGCTATAATGCCGGTGAAAT-AC
*
14927197 TA-TCGGGCCTTGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
14927234 TTTGAGAAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 11 0.15
43 14 0.19
44 10 0.14
45 36 0.50
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (44 bp):
TATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
Found at i:14928399 original size:39 final size:38
Alignment explanation
Indices: 14928322--14928399 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
14928312 TTATGAGTAT
* *
14928322 TGTGATATATGCTTAAATGTTATATGATTATATGTGTAA
1 TGTGATATATGCTTAAAAGTAATATGATTATA-GTGTAA
*
14928361 TGTGATATATGCTTAAAAGTGAATGTGATTACTA-TGTAA
1 TGTGATATATGCTTAAAAGT-AATATGATTA-TAGTGTAA
14928400 ATGAACTAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 24 0.71
40 8 0.24
41 2 0.06
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (38 bp):
TGTGATATATGCTTAAAAGTAATATGATTATAGTGTAA
Found at i:14929632 original size:24 final size:24
Alignment explanation
Indices: 14929605--14929654 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
14929595 CATGCATCGA
*
14929605 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
14929629 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
14929653 CA
1 CA
14929655 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:14929727 original size:94 final size:94
Alignment explanation
Indices: 14929610--14929985 Score: 689
Period size: 94 Copynumber: 4.0 Consensus size: 94
14929600 ATCGACATTC
* *
14929610 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
14929675 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
14929704 AAATCTACACACAAAGTGACATTTAATTCTGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
14929769 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
14929798 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
14929863 GGCAATTTACTTAATTCAAATAGCATATT
66 GGCAATTTACTTAATTCAAATAGCATATA
*
14929892 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
14929957 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
14929986 CGGTCACATT
Statistics
Matches: 272, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 272 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:14937458 original size:24 final size:26
Alignment explanation
Indices: 14937430--14937492 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 26
14937420 TCAACCAAAT
* *
14937430 TCGCACACATAGTGCT-A-ATTAAGC
1 TCGCACACATAGTGCTCATACTAAAC
14937454 TCGCACACATAGTG-TCATACTAAAC
1 TCGCACACATAGTGCTCATACTAAAC
14937479 -CGCACACATAGTGC
1 TCGCACACATAGTGC
14937493 CTGAAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 1 0.03
24 28 0.82
25 5 0.15
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (26 bp):
TCGCACACATAGTGCTCATACTAAAC
Found at i:14937544 original size:24 final size:24
Alignment explanation
Indices: 14937517--14937566 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
14937507 CATGCATCGA
*
14937517 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
14937541 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
14937565 CA
1 CA
14937567 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:14937809 original size:91 final size:94
Alignment explanation
Indices: 14937522--14937887 Score: 606
Period size: 93 Copynumber: 4.0 Consensus size: 94
14937512 ATCGACATTC
* *
14937522 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
14937587 GGCAATTTACTTAATTCAAATAG-ATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
14937615 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAA-AA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
14937679 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
14937708 AAA-CTGCACACAAAGTGACATTTAATTCCGCACACA-AGTGCCAATGTTAACTCATTATAA-AA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
14937770 GGCAA-TTACTT-ATTCAAATAGCATATAA
66 GGCAATTTACTTAATTCAAATAGCATAT-A
* * *
14937798 AAATCTACACAC-AACTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
14937862 GGCAACTTACTTAA-TCAAATAGCATA
66 GGCAATTTACTTAATTCAAATAGCATA
14937888 ACGGTCACAT
Statistics
Matches: 261, Mismatches: 5, Indels: 14
0.93 0.02 0.05
Matches are distributed among these distances:
89 15 0.06
90 33 0.13
91 62 0.24
92 64 0.25
93 86 0.33
94 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:14937824 original size:182 final size:185
Alignment explanation
Indices: 14937526--14937887 Score: 601
Period size: 182 Copynumber: 2.0 Consensus size: 185
14937516 ACATTCAAAT
* *
14937526 CTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCA
1 CTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCA
* *
14937591 ATTTACTTAATTCAAATAGATATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGT
66 ATTTACTTAATTCAAATAGATATAAAATCTACACACAAACTGACATTTAATTCCGCACACATAGT
*
14937656 GCCAATGTTAACTCATTATAA-AAGGCAATTTACTTAATTCAAATAGCATATAAAA
131 GCCAATGTTAACTCATTATAATAAGGCAACTTACTTAA-TCAAATAGCATATAAAA
14937711 CTGCACACAAAGTGACATTTAATTCCGCACACA-AGTGCCAATGTTAACTCATTATAA-AAGGCA
1 CTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCA
14937774 A-TTACTT-ATTCAAATAGCATATAAAAATCTACACAC-AACTGACATTTAATTCCGCACACATA
66 ATTTACTTAATTCAAATAG-ATAT-AAAATCTACACACAAACTGACATTTAATTCCGCACACATA
*
14937836 GTGCCAATGTTAACTCATTATAATATGGCAACTTACTTAATCAAATAGCATA
129 GTGCCAATGTTAACTCATTATAATAAGGCAACTTACTTAATCAAATAGCATA
14937888 ACGGTCACAT
Statistics
Matches: 168, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
181 10 0.06
182 70 0.42
183 33 0.20
184 24 0.14
185 31 0.18
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (185 bp):
CTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCA
ATTTACTTAATTCAAATAGATATAAAATCTACACACAAACTGACATTTAATTCCGCACACATAGT
GCCAATGTTAACTCATTATAATAAGGCAACTTACTTAATCAAATAGCATATAAAA
Found at i:14948873 original size:18 final size:18
Alignment explanation
Indices: 14948852--14948972 Score: 66
Period size: 19 Copynumber: 6.0 Consensus size: 18
14948842 TGAACCCAAC
14948852 AAAAT-TTTTAAAATAATT
1 AAAATATTTTAAAA-AATT
*
14948870 AAAATAATTTTAAAAATTT
1 AAAAT-ATTTTAAAAAATT
*
14948889 AAAATATTTATAAAAATTCT
1 AAAATATTT-TAAAAAAT-T
*
14948909 AAAATTTATATTTTTAAAAATT
1 -AAA---ATATTTTAAAAAATT
14948931 ATAAA-ATTTCTAAAAAATTTCT
1 A-AAATATTT-TAAAAAA--T-T
14948953 AAAAAATATTTTAAAAAATT
1 --AAAATATTTTAAAAAATT
14948973 TTAAAATAAT
Statistics
Matches: 83, Mismatches: 4, Indels: 30
0.71 0.03 0.26
Matches are distributed among these distances:
18 13 0.16
19 23 0.28
20 10 0.12
21 6 0.07
22 4 0.05
23 16 0.19
24 11 0.13
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAATATTTTAAAAAATT
Found at i:14948887 original size:9 final size:9
Alignment explanation
Indices: 14948852--14948978 Score: 57
Period size: 10 Copynumber: 13.4 Consensus size: 9
14948842 TGAACCCAAC
*
14948852 AAAATTTTT
1 AAAAATTTT
* *
14948861 AAAATAATTA
1 AAAA-ATTTT
14948871 AAATAATTTT
1 AAA-AATTTT
14948881 AAAAA-TTT
1 AAAAATTTT
14948889 AAAATATTTAT
1 AAAA-ATTT-T
*
14948900 AAAAATTCT
1 AAAAATTTT
14948909 -AAAA-TTT
1 AAAAATTTT
* *
14948916 -ATATTTTT
1 AAAAATTTT
*
14948924 AAAAATTAT
1 AAAAATTTT
14948933 -AAAATTTCT
1 AAAAATTT-T
14948942 AAAAAATTTCT
1 -AAAAATTT-T
14948953 AAAAAATATTTT
1 --AAAA-ATTTT
14948965 AAAAAATTTT
1 -AAAAATTTT
14948975 AAAA
1 AAAA
14948979 TAATACTTTT
Statistics
Matches: 93, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
7 4 0.04
8 20 0.22
9 18 0.19
10 21 0.23
11 20 0.22
12 6 0.06
13 4 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAAATTTT
Found at i:14948893 original size:28 final size:27
Alignment explanation
Indices: 14948858--14948916 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
14948848 CAACAAAATT
*
14948858 TTTAAAATAATTA-AAATAATTTTAAAAA
1 TTTAAAATAATTATAAA-AATTCT-AAAA
*
14948886 TTTAAAATATTTATAAAAATTCTAAAA
1 TTTAAAATAATTATAAAAATTCTAAAA
14948913 TTTA
1 TTTA
14948917 TATTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 8 0.29
28 17 0.61
29 3 0.11
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
TTTAAAATAATTATAAAAATTCTAAAA
Found at i:14948926 original size:24 final size:24
Alignment explanation
Indices: 14948892--14948939 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
14948882 AAAATTTAAA
*
14948892 ATATTTATAAAAATTCTAAAATTT
1 ATATTTATAAAAATTATAAAATTT
*
14948916 ATATTTTTAAAAATTATAAAATTT
1 ATATTTATAAAAATTATAAAATTT
14948940 CTAAAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
ATATTTATAAAAATTATAAAATTT
Found at i:14948946 original size:42 final size:41
Alignment explanation
Indices: 14948870--14948979 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 41
14948860 TAAAATAATT
*
14948870 AAAATAATTTTAAAAATTTAAAATATT-TATAAAAA-TTCTAA
1 AAAATATTTTTAAAAATTTAAAAT-TTATA-AAAAATTTCTAA
* *
14948911 AATTTATATTTTTAAAAATTATAAAATTTCTAAAAAATTTCTAA
1 AA--AATATTTTTAAAAATT-TAAAATTTATAAAAAATTTCTAA
*
14948955 AAAATATTTTAAAAAATTTTAAAAT
1 AAAATATTTTTAAAAA-TTTAAAAT
14948980 AATACTTTTG
Statistics
Matches: 59, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
41 2 0.03
42 18 0.31
43 23 0.39
44 16 0.27
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (41 bp):
AAAATATTTTTAAAAATTTAAAATTTATAAAAAATTTCTAA
Found at i:14948956 original size:10 final size:11
Alignment explanation
Indices: 14948933--14948978 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
14948923 TAAAAATTAT
14948933 AAAATTTCTAA
1 AAAATTTCTAA
14948944 AAAATTTCTAA
1 AAAATTTCTAA
*
14948955 AAAATATTTTAA
1 AAAAT-TTCTAA
14948967 AAAATTT-TAA
1 AAAATTTCTAA
14948977 AA
1 AA
14948979 TAATACTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
10 5 0.15
11 18 0.55
12 10 0.30
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAATTTCTAA
Found at i:14948971 original size:23 final size:23
Alignment explanation
Indices: 14948868--14948988 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 23
14948858 TTTAAAATAA
14948868 TTAAAAT-A-ATTTT-AAAAA-T
1 TTAAAATAATATTTTAAAAAATT
*
14948887 TTAAAAT-AT-TTAT-AAAAATT
1 TTAAAATAATATTTTAAAAAATT
* * *
14948907 CTAAAATTTATATTTTTAAAAA--
1 TTAAAA-TAATATTTTAAAAAATT
* *
14948929 TTATAA-AAT-TTCTAAAAAATT
1 TTAAAATAATATTTTAAAAAATT
14948950 TCTAAAA-AATATTTTAAAAAATT
1 T-TAAAATAATATTTTAAAAAATT
14948973 TTAAAATAATACTTTT
1 TTAAAATAATA-TTTT
14948989 GGAACTAAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 19
0.73 0.09 0.17
Matches are distributed among these distances:
19 24 0.30
20 8 0.10
21 2 0.03
22 18 0.22
23 19 0.24
24 9 0.11
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (23 bp):
TTAAAATAATATTTTAAAAAATT
Found at i:14949068 original size:16 final size:16
Alignment explanation
Indices: 14949047--14949078 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14949037 TCTGTGACAA
14949047 AATTTTAAATATATAT
1 AATTTTAAATATATAT
*
14949063 AATTTTAAATTTATAT
1 AATTTTAAATATATAT
14949079 GCTTTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTTAAATATATAT
Found at i:14952608 original size:46 final size:46
Alignment explanation
Indices: 14952556--14953091 Score: 602
Period size: 46 Copynumber: 11.7 Consensus size: 46
14952546 TGATGCTATA
* *
14952556 GTATCTTTCAACTATGGTCTTACTTATTTTC-TGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTA-TTTCATGTCATGTTGCCATG
* * **
14952602 GTATCTTTCAACCATGGTCTT-GTTCATTTCATGTTACATTGCCATG
1 GTATCTTTCAACCATGGTCTTACTT-ATTTCATGTCATGTTGCCATG
* * **
14952648 GTATCTTTCAACCATGGTCTT-GTTCATTTCATGTTACATTGCCATG
1 GTATCTTTCAACCATGGTCTTACTT-ATTTCATGTCATGTTGCCATG
**
14952694 GTATCTTTCAACCATGGTCTTA-TTCA-TTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTT-ATTTCATGTCATGTTGCCATG
*
14952739 GTATCTTTCAACCATGGTCTTATTTATTT--TCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTATTTCAT-GTCATGTTGCCATG
* * ** *
14952784 GTATCTTTAAACCATGGTCTTA-TTCTTTTCATGTCACATTGTCATG
1 GTATCTTTCAACCATGGTCTTACTT-ATTTCATGTCATGTTGCCATG
** * *
14952830 GTATCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTATTTCATGTCATGTTGCCATG
** *
14952876 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTATTTCATGTCATGTTGCCATG
* ** * *
14952922 GTGTCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTATTTCATGTCATGTTGCCATG
** *
14952968 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTATTTCATGTCATGTTGCCATG
* ** *
14953014 GTGTCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTATTTCATGTCATGTTGCCATG
* **
14953060 GTATCTTTCAACCATGGCCTTACACATTTCAT
1 GTATCTTTCAACCATGGTCTTACTTATTTCAT
14953092 TTCAGAAAGC
Statistics
Matches: 447, Mismatches: 33, Indels: 20
0.89 0.07 0.04
Matches are distributed among these distances:
44 2 0.00
45 81 0.18
46 363 0.81
47 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTTATTTCATGTCATGTTGCCATG
Found at i:14952713 original size:92 final size:92
Alignment explanation
Indices: 14952556--14953091 Score: 666
Period size: 92 Copynumber: 5.8 Consensus size: 92
14952546 TGATGCTATA
* ** * *
14952556 GTATCTTTCAACTATGGTCTTACTTATTTTC-TGTCAGGTTGCCATGGTATCTTTCAACCATGGT
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATCTTTCAACCATGGT
* * **
14952620 CTTGTTCATTTCATGTTACATTGCCATG
65 CTTATTCATTTCATGTCATGTTGCCATG
*** * * **
14952648 GTATCTTTCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
**
14952713 TTATTCA-TTCCCGTCATGTTGCCATG
66 TTATTCATTTCATGTCATGTTGCCATG
*** * *
14952739 GTATCTTTCAACCATGGTCTTATTTATTT--TCGTCATGTTGCCATGGTATCTTTAAACCATGGT
1 GTATCTTTCAACCATGGTCTTACACATTTCAT-ATCATGTTGCCATGGTATCTTTCAACCATGGT
* ** *
14952802 CTTATTCTTTTCATGTCACATTGTCATG
65 CTTATTCATTTCATGTCATGTTGCCATG
*
14952830 GTATCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
** *
14952895 TTACACATTTCATATCATGTTGCCATG
66 TTATTCATTTCATGTCATGTTGCCATG
* *
14952922 GTGTCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
** *
14952987 TTACACATTTCATATCATGTTGCCATG
66 TTATTCATTTCATGTCATGTTGCCATG
* *
14953014 GTGTCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGCC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
**
14953079 TTACACATTTCAT
66 TTATTCATTTCAT
14953092 TTCAGAAAGC
Statistics
Matches: 399, Mismatches: 40, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
89 1 0.00
90 35 0.09
91 85 0.21
92 277 0.69
93 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (92 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
TTATTCATTTCATGTCATGTTGCCATG
Found at i:14952968 original size:138 final size:138
Alignment explanation
Indices: 14952556--14953088 Score: 671
Period size: 138 Copynumber: 3.9 Consensus size: 138
14952546 TGATGCTATA
* ** * *
14952556 GTATCTTTCAACTATGGTCTTACTTATTTTC-TGTCAGGTTGCCATGGTATCTTTCAACCATGGT
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATCTTTCAACCATGGT
*** * * ** *** * *
14952620 CTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGTTAC
65 CTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATGTCAC
14952685 ATTGCCATG
130 ATTGCCATG
** ***
14952694 GTATCTTTCAACCATGGTCTTATTCA-TTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
*** * * **
14952758 TTATTTATTT--TCGTCATGTTGCCATGGTATCTTTAAACCATGGTCTTATTC-TTTTCATGTCA
66 TTACACATTTCAT-ATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATGTCA
*
14952820 CATTGTCATG
129 CATTGCCATG
*
14952830 GTATCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
* * **
14952895 TTACACATTTCATATCATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTTATATCATG
66 TTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATGTCACA
14952960 TTGCCATG
131 TTGCCATG
*
14952968 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTGTCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
*
14953033 TTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGCCTTACACATTT
66 TTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
14953089 CATTTCAGAA
Statistics
Matches: 351, Mismatches: 37, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
135 4 0.01
136 75 0.21
137 81 0.23
138 186 0.53
139 5 0.01
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (138 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC
TTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATGTCACA
TTGCCATG
Found at i:14964088 original size:26 final size:26
Alignment explanation
Indices: 14964054--14964106 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14964044 TTTATAGTTT
*
14964054 TACCTCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
14964080 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
14964106 T
1 T
14964107 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:14970614 original size:32 final size:32
Alignment explanation
Indices: 14970578--14970642 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
14970568 TGTATGCATT
14970578 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
14970610 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
14970642 T
1 T
14970643 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:14972153 original size:26 final size:26
Alignment explanation
Indices: 14972124--14972176 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14972114 TTTACAGTTT
*
14972124 TACCTCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
14972150 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
14972176 T
1 T
14972177 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:14993882 original size:28 final size:28
Alignment explanation
Indices: 14993822--14993876 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
14993812 AACATGTAAG
* * *
14993822 AAAT-TATTAATAATATTATTTAAATCA
1 AAATATATTAATAATAATATTCAAACCA
14993849 AAATATATTAATAATAATATTCAAACCA
1 AAATATATTAATAATAATATTCAAACCA
14993877 TGATATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (28 bp):
AAATATATTAATAATAATATTCAAACCA
Found at i:14993910 original size:15 final size:15
Alignment explanation
Indices: 14993890--14993921 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14993880 TATTTTTTAT
*
14993890 TATTTTAATATTAAA
1 TATTTTAAAATTAAA
14993905 TATTTTAAAATTAAA
1 TATTTTAAAATTAAA
14993920 TA
1 TA
14993922 ATATTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTTAAAATTAAA
Found at i:14995929 original size:44 final size:44
Alignment explanation
Indices: 14995870--14995954 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
14995860 TATATATAAG
* * * * *
14995870 GCATCTGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
1 GCATCTAAACTCGTTGAATTGGTCCAAGTTCATAATGGATGCGA
14995914 GCATCTAAACTCGTTGAATTGGTCCAAGTTCATAATGGATG
1 GCATCTAAACTCGTTGAATTGGTCCAAGTTCATAATGGATG
14995955 TGATACATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (44 bp):
GCATCTAAACTCGTTGAATTGGTCCAAGTTCATAATGGATGCGA
Done.