Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 47 of 344
Found at i:15641555 original size:14 final size:14
Alignment explanation
Indices: 15641480--15641551 Score: 90
Period size: 14 Copynumber: 5.1 Consensus size: 14
15641470 CATAAGGTTC
*
15641480 ACCCTAAACCATAA
1 ACCCTAAACCCTAA
* *
15641494 ACCATAAACCATAA
1 ACCCTAAACCCTAA
*
15641508 ACCCTAAACACTAA
1 ACCCTAAACCCTAA
15641522 ACCCTAAAACCCTAA
1 ACCCT-AAACCCTAA
*
15641537 ATCCTAAACCCTAA
1 ACCCTAAACCCTAA
15641551 A
1 A
15641552 TCCTCTAGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
14 39 0.76
15 12 0.24
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
ACCCTAAACCCTAA
Found at i:15643725 original size:23 final size:23
Alignment explanation
Indices: 15643674--15643725 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
15643664 AAAAGTGCAT
* *
15643674 AATAAAATAAAATATATAAATCT
1 AATAAAATAAAATAAATAAATCA
15643697 AA-AAAATAAAAATAAATAAAT-A
1 AATAAAAT-AAAATAAATAAATCA
15643719 AATAAAA
1 AATAAAA
15643726 ATAGGGCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (23 bp):
AATAAAATAAAATAAATAAATCA
Found at i:15647016 original size:14 final size:14
Alignment explanation
Indices: 15646997--15647041 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
15646987 CAAACAAAAG
15646997 AAAAATTAAAATAT
1 AAAAATTAAAATAT
15647011 AAAAATT-AAAT-T
1 AAAAATTAAAATAT
*
15647023 AAAAA-TAAAAAAT
1 AAAAATTAAAATAT
15647036 AAAAAT
1 AAAAAT
15647042 GGCTAAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
11 1 0.04
12 9 0.33
13 10 0.37
14 7 0.26
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATTAAAATAT
Found at i:15647021 original size:19 final size:18
Alignment explanation
Indices: 15646999--15647038 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
15646989 AACAAAAGAA
*
15646999 AAATTAAAATATAAAAATT
1 AAATTAAAA-ATAAAAAAT
15647018 AAATTAAAAATAAAAAAT
1 AAATTAAAAATAAAAAAT
15647036 AAA
1 AAA
15647039 AATGGCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
AAATTAAAAATAAAAAAT
Found at i:15653878 original size:31 final size:32
Alignment explanation
Indices: 15653823--15653888 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
15653813 GAAATTAGGG
15653823 TTAAGATTTAAGGTTTTTTAA-TTTTAAGTGT
1 TTAAGATTTAAGGTTTTTTAATTTTTAAGTGT
* *
15653854 TTAAG-TTTAGGGTTTTATTTATTTTTAAGTGT
1 TTAAGATTTAAGGTTTT-TTAATTTTTAAGTGT
15653886 TTA
1 TTA
15653889 TTAATTACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 10 0.32
31 8 0.26
32 13 0.42
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.58
Consensus pattern (32 bp):
TTAAGATTTAAGGTTTTTTAATTTTTAAGTGT
Found at i:15655631 original size:54 final size:51
Alignment explanation
Indices: 15655482--15655636 Score: 159
Period size: 53 Copynumber: 2.9 Consensus size: 51
15655472 TACACGAAAG
* * * *
15655482 CACTTATCACTTGTCTCTGATGCCATAGCCCAACTGTGGTCTTATACAGAT
1 CACTTATCACTTGTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGAT
* ** * * *
15655533 CGCTTGTATCACTTCAATT-CGAAGCCATAGCCCAGCTATAGTCTTATACGGGAAT
1 CAC-T-TATCACTT-GTTTCCGATGCCATAGCCCAGCTATGGTCTTATAC-AG-AT
15655588 CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACA
1 CACTTATCACTTG-TTTCCGATGCCATAGCCCAGCTATGGTCTTATACA
15655637 AATATCGATT
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
51 2 0.02
52 1 0.01
53 43 0.53
54 31 0.38
55 4 0.05
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (51 bp):
CACTTATCACTTGTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGAT
Found at i:15655649 original size:54 final size:51
Alignment explanation
Indices: 15655485--15655656 Score: 143
Period size: 54 Copynumber: 3.2 Consensus size: 51
15655475 ACGAAAGCAC
* * * * *
15655485 TTATCACTTG-TCTCTGATGCCATAGCCCAACTGTGGTCTTATACAGATCGCT
1 TTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACA-ATCG-A
*** * *
15655537 TGTATCACTTCAATT-CGAAGCCATAGCCCAGCTATAGTCTTATACGGGAATC-A
1 T-TATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATAC---AATCGA
15655590 CTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAAATATCGA
1 -TTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATAC--A-ATCGA
15655645 TTATCACTTGTT
1 TTATCACTTGTT
15655657 GCCATGGTCC
Statistics
Matches: 95, Mismatches: 16, Indels: 16
0.75 0.13 0.13
Matches are distributed among these distances:
52 1 0.01
53 44 0.46
54 45 0.47
55 4 0.04
56 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAATCGA
Found at i:15661122 original size:29 final size:29
Alignment explanation
Indices: 15661084--15661143 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
15661074 TCTTATTTAA
15661084 ATCGTACATTTAATTTAAGATCTCCAAAT
1 ATCGTACATTTAATTTAAGATCTCCAAAT
15661113 ATCGTACATTTAATTTAAGATCTCCAAAT
1 ATCGTACATTTAATTTAAGATCTCCAAAT
15661142 AT
1 AT
15661144 AACTAATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (29 bp):
ATCGTACATTTAATTTAAGATCTCCAAAT
Found at i:15669785 original size:46 final size:46
Alignment explanation
Indices: 15669692--15669777 Score: 113
Period size: 46 Copynumber: 1.9 Consensus size: 46
15669682 TACATCTCTC
* * **
15669692 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCAGACATGCCCAAACATAAGT
*
15669738 GAACTCGGACTCAACTCAACGAGTTC-G-GATGCCCAAACAT
1 GAACTCGGACTCAACTCAACGAGTTCAGACATGCCCAAACAT
15669778 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 8 0.23
45 1 0.03
46 26 0.74
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACATGCCCAAACATAAGT
Found at i:15673384 original size:14 final size:12
Alignment explanation
Indices: 15673372--15673403 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
15673362 AAATTTCTCC
15673372 CTTTTTCTTTCT
1 CTTTTTCTTTCT
15673384 CTTTTTCTTT-T
1 CTTTTTCTTTCT
15673395 CTTTTTCTT
1 CTTTTTCTT
15673404 CCTTCTCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (12 bp):
CTTTTTCTTTCT
Found at i:15683020 original size:21 final size:21
Alignment explanation
Indices: 15682996--15683047 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
15682986 TGTTAGATTG
*
15682996 ACACGGGCGTAGGGATTTCCC
1 ACACGGGCGTAGAGATTTCCC
15683017 ACACGGGCGTAGAGATTTCCC
1 ACACGGGCGTAGAGATTTCCC
15683038 ACACGGGCGT
1 ACACGGGCGT
15683048 GAAAGAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.21, C:0.29, G:0.33, T:0.17
Consensus pattern (21 bp):
ACACGGGCGTAGAGATTTCCC
Found at i:15686126 original size:40 final size:40
Alignment explanation
Indices: 15686066--15686153 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
15686056 GATCCATAAA
15686066 TCGAGTTAATGCAACCCTAGAGTGTTAATTATAGAAAAGTC
1 TCGA-TTAATGCAACCCTAGAGTGTTAATTATAGAAAAGTC
*
15686107 TCGATTAATGCAACCCTAGAGTGTTAATTATAGAAAATTC
1 TCGATTAATGCAACCCTAGAGTGTTAATTATAGAAAAGTC
15686147 TCGATTA
1 TCGATTA
15686154 TTCAATCTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (40 bp):
TCGATTAATGCAACCCTAGAGTGTTAATTATAGAAAAGTC
Found at i:15698870 original size:79 final size:79
Alignment explanation
Indices: 15698776--15698933 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
15698766 TCAACTCACT
15698776 TTTCAATTTCAATCAATATTCATTTCAATTCAATAATTGTATATACTCATATGATCAATTAAATT
1 TTTCAATTTCAATCAATATTCATTTCAATTCAATAATTGTATATACTCATATGATCAATTAAATT
15698841 TATTCAATACCATC
66 TATTCAATACCATC
15698855 TTTCAATTTCAATCAATATTCATTTCAATTCAATAATTGTATATACTCATATGATCAATTAAATT
1 TTTCAATTTCAATCAATATTCATTTCAATTCAATAATTGTATATACTCATATGATCAATTAAATT
15698920 TATTCAATACCATC
66 TATTCAATACCATC
15698934 ATATCCAATA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (79 bp):
TTTCAATTTCAATCAATATTCATTTCAATTCAATAATTGTATATACTCATATGATCAATTAAATT
TATTCAATACCATC
Found at i:15707606 original size:47 final size:47
Alignment explanation
Indices: 15707553--15707710 Score: 149
Period size: 51 Copynumber: 3.2 Consensus size: 47
15707543 AAAAACAACA
* *
15707553 AACAATGAAGCATAATTAAAACACCACTTTATTTATAAATGCAATAG
1 AACAATGAAGCATAATTAAAACACCACTTTATTTATGAATGCAAAAG
* * *
15707600 AACAATGAATGAAGCATAAATATAAAACA--ACTCTATGTATGAATGCAACAAA
1 AAC----AATGAAGCAT-AAT-TAAAACACCACTTTATTTATGAATGCAA-AAG
* *
15707652 ATAGTCAATGAAGCATAATTAAAACACCACTTTATTTATGGATGCAACAG
1 A-A--CAATGAAGCATAATTAAAACACCACTTTATTTATGAATGCAAAAG
15707702 AACAATGAA
1 AACAATGAA
15707711 TGAAGTATAA
Statistics
Matches: 89, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
47 10 0.11
49 8 0.09
50 5 0.06
51 52 0.58
52 5 0.06
53 8 0.09
55 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.25
Consensus pattern (47 bp):
AACAATGAAGCATAATTAAAACACCACTTTATTTATGAATGCAAAAG
Found at i:15707668 original size:102 final size:100
Alignment explanation
Indices: 15707549--15707845 Score: 391
Period size: 102 Copynumber: 3.0 Consensus size: 100
15707539 AAAAAAAAAC
* * *
15707549 AACAAACAATGAAGCATAATTAAAACACCACTTTATTTATAAATGCAATAGAACAATGAATGAAG
1 AACAATCAATGAAGCATAATTAAAACACCACTTTATTTATAGATGCAACAGAACAATGAATGAAG
* *
15707614 CATAAATATAAAACAACTCTATGTATGAATGCAACAA
66 CAT-AA-ATAAAGCAACTCTATTTATGAATGCAACAA
* * *
15707651 AATAGTCAATGAAGCATAATTAAAACACCACTTTATTTATGGATGCAACAGAACAATGAATGAAG
1 AACAATCAATGAAGCATAATTAAAACACCACTTTATTTATAGATGCAACAGAACAATGAATGAAG
* * * *
15707716 TATAAATAAAGCAACTCTTTTTATGAATGGAGCAA
66 CATAAATAAAGCAACTCTATTTATGAATGCAACAA
* * * * * *
15707751 AACAATCAATGAAGAATAAATAAAACA--ACTTTATTTCTTGATGCAACAAAACAATCAATGAAG
1 AACAATCAATGAAGCATAATTAAAACACCACTTTATTTATAGATGCAACAGAACAATGAATGAAG
*
15707814 CATAAATAAAGCAACTTTATTTATGAATGCAA
66 CATAAATAAAGCAACTCTATTTATGAATGCAA
15707846 GTATGCTTTA
Statistics
Matches: 170, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
98 59 0.35
100 48 0.28
101 2 0.01
102 61 0.36
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (100 bp):
AACAATCAATGAAGCATAATTAAAACACCACTTTATTTATAGATGCAACAGAACAATGAATGAAG
CATAAATAAAGCAACTCTATTTATGAATGCAACAA
Found at i:15707755 original size:49 final size:49
Alignment explanation
Indices: 15707549--15707845 Score: 319
Period size: 49 Copynumber: 5.9 Consensus size: 49
15707539 AAAAAAAAAC
* * * * *
15707549 AACAAACAATGAAGCATAATTAAAACACCACTTTATTTATAAATGCAATAG
1 AACAATCAATGAAGCATAAATAAAACA--ACTTTATTTATGAATGCAACAA
* * *
15707600 AACAATGAATGAAGCATAAATATAAAACAACTCTATGTATGAATGCAACAA
1 AACAATCAATGAAGCAT-AA-ATAAAACAACTTTATTTATGAATGCAACAA
* * * * *
15707651 AATAGTCAATGAAGCATAATTAAAACACCACTTTATTTATGGATGCAACAG
1 AACAATCAATGAAGCATAAATAAAACA--ACTTTATTTATGAATGCAACAA
* * * * *
15707702 AACAATGAATGAAGTATAAATAAAGCAACTCTT-TTTATGAATGGAGCAA
1 AACAATCAATGAAGCATAAATAAAACAACT-TTATTTATGAATGCAACAA
* *
15707751 AACAATCAATGAAGAATAAATAAAACAACTTTATTTCTTG-ATGCAACAA
1 AACAATCAATGAAGCATAAATAAAACAACTTTATTT-ATGAATGCAACAA
*
15707800 AACAATCAATGAAGCATAAATAAAGCAACTTTATTTATGAATGCAA
1 AACAATCAATGAAGCATAAATAAAACAACTTTATTTATGAATGCAA
15707846 GTATGCTTTA
Statistics
Matches: 203, Mismatches: 35, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
48 4 0.02
49 99 0.49
50 6 0.03
51 85 0.42
52 2 0.01
53 7 0.03
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (49 bp):
AACAATCAATGAAGCATAAATAAAACAACTTTATTTATGAATGCAACAA
Found at i:15716534 original size:5 final size:6
Alignment explanation
Indices: 15716517--15716541 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15716507 TTCCTCATGC
15716517 TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT T
15716542 TTGCATTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:15718824 original size:21 final size:22
Alignment explanation
Indices: 15718798--15718838 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
15718788 TGTATTTTGA
15718798 TGTTTAATGG-TAGA-AAATGCT
1 TGTTT-ATGGTTAGAGAAATGCT
15718819 TGTTTATGGTTAGAGAAATG
1 TGTTTATGGTTAGAGAAATG
15718839 ACTTTTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.32, C:0.02, G:0.27, T:0.39
Consensus pattern (22 bp):
TGTTTATGGTTAGAGAAATGCT
Found at i:15731354 original size:100 final size:100
Alignment explanation
Indices: 15731199--15731507 Score: 408
Period size: 100 Copynumber: 3.1 Consensus size: 100
15731189 CATAACCTAA
* * * * *
15731199 ATGAATACAACAAAAAAAAACAATGACGCATAATTAAACCACCACTTTATTTATGAATGCAACAG
1 ATGAATGCAAC-AAAATAATCAATGAAGCATAATTAAAACACCACTTTATTTATGAATGCAACAG
* * *
15731264 AACAATAAATGAAGCATAAATAAAACAGCTCTATAT
65 AACAATAAATGAAGCATAAATAAAGCAACTCTATTT
*
15731300 ATGAATGCAACAAAATAATCAATGAAGCATAATTAAAACACCACTTTATTTATGAATGCAATAGA
1 ATGAATGCAACAAAATAATCAATGAAGCATAATTAAAACACCACTTTATTTATGAATGCAACAGA
* *
15731365 ACAATGAATGAAGCATAACTAAAGCAACTCTATTT
66 ACAATAAATGAAGCATAAATAAAGCAACTCTATTT
* * * * *
15731400 ATGAATGCAACAAAATAATAAATTAAGCATAAATAAAACA--ACTTGT-TTTATGAATGCAAGAA
1 ATGAATGCAACAAAATAATCAATGAAGCATAATTAAAACACCACTT-TATTTATGAATGCAACAG
* * *
15731462 AACAATCAATAAAGCATAAATAAAGCAACTTTATTT
65 AACAATAAATGAAGCATAAATAAAGCAACTCTATTT
15731498 ATGAATGCAA
1 ATGAATGCAA
15731508 GTATATTGAA
Statistics
Matches: 187, Mismatches: 20, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
98 60 0.32
99 1 0.01
100 116 0.62
101 10 0.05
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.25
Consensus pattern (100 bp):
ATGAATGCAACAAAATAATCAATGAAGCATAATTAAAACACCACTTTATTTATGAATGCAACAGA
ACAATAAATGAAGCATAAATAAAGCAACTCTATTT
Found at i:15731508 original size:49 final size:49
Alignment explanation
Indices: 15731199--15731507 Score: 332
Period size: 49 Copynumber: 6.2 Consensus size: 49
15731189 CATAACCTAA
* * * * * *
15731199 ATGAATACAACAAAAAAAAACAATGACGCATAATTAAACCACCACTTTATTT
1 ATGAATGCAACAAAACAATA-AATGAAGCATAAATAAA--ACAACTTTATTT
* * * *
15731251 ATGAATGCAACAGAACAATAAATGAAGCATAAATAAAACAGCTCTATAT
1 ATGAATGCAACAAAACAATAAATGAAGCATAAATAAAACAACTTTATTT
* * *
15731300 ATGAATGCAACAAAATAATCAATGAAGCATAATTAAAACACCACTTTATTT
1 ATGAATGCAACAAAACAATAAATGAAGCATAAATAAAACA--ACTTTATTT
* * * * * *
15731351 ATGAATGCAATAGAACAATGAATGAAGCATAACTAAAGCAACTCTATTT
1 ATGAATGCAACAAAACAATAAATGAAGCATAAATAAAACAACTTTATTT
* *
15731400 ATGAATGCAACAAAATAATAAATTAAGCATAAATAAAACAACTTGT-TTT
1 ATGAATGCAACAAAACAATAAATGAAGCATAAATAAAACAACTT-TATTT
* * * *
15731449 ATGAATGCAAGAAAACAATCAATAAAGCATAAATAAAGCAACTTTATTT
1 ATGAATGCAACAAAACAATAAATGAAGCATAAATAAAACAACTTTATTT
15731498 ATGAATGCAA
1 ATGAATGCAA
15731508 GTATATTGAA
Statistics
Matches: 216, Mismatches: 37, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.00
49 143 0.66
50 1 0.00
51 55 0.25
52 16 0.07
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.25
Consensus pattern (49 bp):
ATGAATGCAACAAAACAATAAATGAAGCATAAATAAAACAACTTTATTT
Found at i:15732233 original size:38 final size:38
Alignment explanation
Indices: 15732191--15732279 Score: 142
Period size: 38 Copynumber: 2.3 Consensus size: 38
15732181 TAAGGTTTAA
* *
15732191 GTAGAAAGCTTAAGGTAGTTTCAATCTTAAGATTTTGG
1 GTAGAAAGCTTAAGGCAGTTGCAATCTTAAGATTTTGG
*
15732229 GTAGAAAGCTTAGGGCAGTTGCAATCTTAAGATTTTGG
1 GTAGAAAGCTTAAGGCAGTTGCAATCTTAAGATTTTGG
*
15732267 GTAGAAATCTTAA
1 GTAGAAAGCTTAA
15732280 TAGAGTTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.33, C:0.09, G:0.25, T:0.34
Consensus pattern (38 bp):
GTAGAAAGCTTAAGGCAGTTGCAATCTTAAGATTTTGG
Found at i:15733071 original size:10 final size:10
Alignment explanation
Indices: 15733053--15733102 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
15733043 ATATTTTGCC
15733053 TAATTATTAT
1 TAATTATTAT
*
15733063 TAGTTATTAT
1 TAATTATTAT
*
15733073 T--TTA-AAT
1 TAATTATTAT
15733080 TAATTATTATT
1 TAATTATTA-T
15733091 TAATTATTAT
1 TAATTATTAT
15733101 TA
1 TA
15733103 TAGTTCAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
7 3 0.09
8 3 0.09
9 3 0.09
10 14 0.42
11 10 0.30
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
TAATTATTAT
Found at i:15733086 original size:17 final size:16
Alignment explanation
Indices: 15733061--15733103 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
15733051 CCTAATTATT
*
15733061 ATTAGTTATTATTTTAA
1 ATTAATTATTATTTT-A
15733078 ATTAATTATTA-TTTA
1 ATTAATTATTATTTTA
15733093 ATT-ATTATTAT
1 ATTAATTATTAT
15733104 AGTTCAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 7 0.29
15 4 0.17
16 3 0.12
17 10 0.42
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTAATTATTATTTTA
Found at i:15733087 original size:14 final size:14
Alignment explanation
Indices: 15733055--15733103 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
15733045 ATTTTGCCTA
*
15733055 ATTATTATT-AGTT
1 ATTATTATTAAATT
15733068 ATTATT-TTAAATT
1 ATTATTATTAAATT
*
15733081 AATTATTATTTAATT
1 -ATTATTATTAAATT
15733096 ATTATTAT
1 ATTATTAT
15733104 AGTTCAATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 2 0.06
13 9 0.29
14 14 0.45
15 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (14 bp):
ATTATTATTAAATT
Found at i:15751341 original size:48 final size:48
Alignment explanation
Indices: 15751286--15751678 Score: 626
Period size: 48 Copynumber: 8.1 Consensus size: 48
15751276 ACACATCGCC
* *
15751286 TACATATTTCAAACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
15751334 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
15751382 TACCTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
15751432 TATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
15751480 TATATATATTCCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATAT-TT-CACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15751530 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
15751578 TATATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
15751626 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15751674 TACAT
1 TACAT
15751679 CAATTTCAGC
Statistics
Matches: 324, Mismatches: 15, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
48 232 0.72
49 5 0.02
50 86 0.27
51 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:15751607 original size:196 final size:194
Alignment explanation
Indices: 15751300--15751671 Score: 656
Period size: 196 Copynumber: 1.9 Consensus size: 194
15751290 TATTTCAAAC
15751300 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
* *
15751365 CACATATGCATATCTCATACCTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
66 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT--
*
15751430 TATATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTCATATATATATTCCGC
129 TATACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATATATATTCCGC
15751494 AT
193 AT
*
15751496 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
* *
15751561 CACATATACATATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTTA
66 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
15751626 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
131 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
15751672 TATACATCAA
Statistics
Matches: 169, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
194 45 0.27
195 1 0.01
196 123 0.73
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.36
Consensus pattern (194 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTCCGCAT
Found at i:15755696 original size:80 final size:80
Alignment explanation
Indices: 15755573--15755919 Score: 559
Period size: 80 Copynumber: 4.3 Consensus size: 80
15755563 CTAGCATGAT
* * * * *
15755573 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAATGCTCTTCGGGACTTAACCCTGATA
1 TGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
15755638 TAACTCTAGCACAAA
66 TAACTCTAGCACAAA
15755653 TGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
15755718 TAACTCTAGCACAAA
66 TAACTCTAGCACAAA
* *
15755733 TGCTCTTCGAGACTTAGCTCGGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
15755798 TAACTCTAGCACAAA
66 TAACTCTAGCACAAA
* *
15755813 TGCTCTTCGAGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATA
1 TGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* * *
15755878 TATCACTAGCACGAA
66 TAACTCTAGCACAAA
* * *
15755893 TGCTATTCGGGACTTAGCCCAGATATA
1 TGCTCTTCGAGACTTAGCCCGGATATA
15755920 TATAACTCTC
Statistics
Matches: 251, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 251 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (80 bp):
TGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
TAACTCTAGCACAAA
Found at i:15755920 original size:40 final size:40
Alignment explanation
Indices: 15755561--15755919 Score: 484
Period size: 40 Copynumber: 9.0 Consensus size: 40
15755551 GAATACACAT
* * * *
15755561 CACTAGCATGATTGCTCTTCGGGACCTAGCCCAGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
15755601 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
15755641 CTCTAGCACAAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
15755681 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
15755721 CTCTAGCACAAATGCTCTTCGAGACTTAGCTCGGACATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
15755761 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
15755801 CTCTAGCACAAATGCTCTTCGAGACTTAGCCCGGACATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
15755841 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAT
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
15755881 CACTAGCACGAATGCTATTCGGGACTTAGCCCAGATATA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
15755920 TATAACTCTC
Statistics
Matches: 277, Mismatches: 42, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 277 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:15757283 original size:37 final size:37
Alignment explanation
Indices: 15757176--15757284 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
15757166 AGCTCAGATG
* * * *
15757176 AAATCTCCACACGAAGTTATTGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
15757213 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
15757250 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
15757285 ATATATATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:15757488 original size:48 final size:48
Alignment explanation
Indices: 15757433--15757883 Score: 652
Period size: 48 Copynumber: 9.1 Consensus size: 48
15757423 ACACATCGCC
*
15757433 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
15757481 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15757529 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
15757581 TATATATTTCATATT-GACCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTC----A
* *
15757633 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15757681 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
15757731 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
15757779 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
15757831 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15757879 TACAT
1 TACAT
15757884 CAATTTCAGC
Statistics
Matches: 373, Mismatches: 18, Indels: 24
0.90 0.04 0.06
Matches are distributed among these distances:
48 188 0.50
50 46 0.12
51 1 0.00
52 137 0.37
53 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:15757688 original size:100 final size:98
Alignment explanation
Indices: 15757436--15757883 Score: 704
Period size: 100 Copynumber: 4.5 Consensus size: 98
15757426 CATCGCCTAC
* *
15757436 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
* *
15757501 TTCGGCTTTACCACATATGCATATCTC--ATAC
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
15757532 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCATATT-
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTA
15757596 GACCATTCGGCTTTACCACATATACATATCTCATATATAT
62 G-CCATTCGGCTTTACCACATATACATATCTC--ATATAT
*
15757636 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
15757701 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
15757734 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
15757799 TTCGACTTTACCACATATACATATCTCATATATAT
66 TTCGGCTTTACCACATATACATATCTC--ATATAT
*
15757834 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
15757884 CAATTTCAGC
Statistics
Matches: 328, Mismatches: 12, Indels: 20
0.91 0.03 0.06
Matches are distributed among these distances:
96 43 0.13
98 95 0.29
99 1 0.00
100 142 0.43
101 1 0.00
104 46 0.14
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:15760958 original size:11 final size:11
Alignment explanation
Indices: 15760927--15760963 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
15760917 TATATATAAA
15760927 TTTTATTATA-
1 TTTTATTATAT
*
15760937 TGTTA-TATAT
1 TTTTATTATAT
15760947 TTTTATTATAT
1 TTTTATTATAT
15760958 TTTTAT
1 TTTTAT
15760964 ATGTAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.17
10 8 0.35
11 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (11 bp):
TTTTATTATAT
Found at i:15772958 original size:44 final size:44
Alignment explanation
Indices: 15772899--15773027 Score: 179
Period size: 44 Copynumber: 2.9 Consensus size: 44
15772889 GATCTAAGAT
**
15772899 GATTTGGTGTCTCTGTATTGTCAGA-AGGCAGATTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGA-GCAGATTGAAGATAGCA
* * * *
15772943 GATTTGTCATTTCTGTATTGTCAGAGAGTAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATTGAAGATAGCA
*
15772987 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATTGAAGATA
15773028 TAGCAGATCT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
44 72 0.99
45 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAGATTGAAGATAGCA
Found at i:15773205 original size:87 final size:87
Alignment explanation
Indices: 15773114--15773523 Score: 407
Period size: 87 Copynumber: 4.7 Consensus size: 87
15773104 GAGAGCAGAC
* * *
15773114 ACATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGT
1 ACATAGCAGATCTGACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* * *
15773179 GTTTACAAGGAGTAAATCAAAG
66 GTCTACAAGAAGCAAATCAAAG
* * * * *** *
15773201 ACATAGCAGATCTGACTTTCAGAGGTTTTTACATCAAAGCAGATCCAAGAT-A-ACAG-AT-CTA
1 ACATAGCAGATCTGACCTTCAGATGTTTATAC-T-GAAGCAGATCCAAGATGATTTGGCATCCTT
* * * * * * * *
15773262 GCGTCTCCATATTCGACGGAGAGCAGAC
64 GTGTCTACA-A---GAAGCAAATCAAAG
*
15773290 ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTGACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
*
15773355 GTTTACAAGAAGCAAATCAAAG
66 GTCTACAAGAAGCAAATCAAAG
* *
15773377 ACATAGCAGGTCTGACCTTCAGATGTTTATACTGAAGCAGATCTAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTGACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* *
15773442 GTCGACAAGAAGCAAATCGAAG
66 GTCTACAAGAAGCAAATCAAAG
* * * ** * *
15773464 ACATAGCAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATC
1 ACATAGCAGATCTGACCTTCA-GATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATC
15773524 TCTATATTGT
Statistics
Matches: 261, Mismatches: 51, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
85 8 0.03
86 3 0.01
87 183 0.70
88 5 0.02
89 51 0.20
90 3 0.01
91 8 0.03
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (87 bp):
ACATAGCAGATCTGACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
GTCTACAAGAAGCAAATCAAAG
Found at i:15773281 original size:176 final size:176
Alignment explanation
Indices: 15773013--15773425 Score: 659
Period size: 176 Copynumber: 2.4 Consensus size: 176
15773003 ATTGTCAGAG
** *
15773013 AGCAAATTGAAGATATAGCAGATCTGACTTTCAGAGGTTTTTACATCAAAGCAGATCCAAGATAA
1 AGCAAATCAAAGACATAGCAGATCTGACTTTCAGAGGTTTTTACATCAAAGCAGATCCAAGATAA
* *
15773078 CAGATCGGGTATCTCCATATTCGACGGAGAGCAGACACATAACAGATCTAACCTTCAGATGTTTA
66 CAGATCGAGCATCTCCATATTCGACGGAGAGCAGACACATAACAGATCTAACCTTCAGATGTTTA
* *
15773143 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
131 TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGA
*
15773189 AGTAAATCAAAGACATAGCAGATCTGACTTTCAGAGGTTTTTACATCAAAGCAGATCCAAGATAA
1 AGCAAATCAAAGACATAGCAGATCTGACTTTCAGAGGTTTTTACATCAAAGCAGATCCAAGATAA
* * *
15773254 CAGATCTAGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
66 CAGATCGAGCATCTCCATATTCGACGGAGAGCAGACACATAACAGATCTAACCTTCAGATGTTTA
15773319 TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGA
131 TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGA
* * * * * *
15773365 AGCAAATCAAAGACATAGCAGGTCTGACCTTCAGATGTTTATAC-T-GAAGCAGATCTAAGAT
1 AGCAAATCAAAGACATAGCAGATCTGACTTTCAGAGGTTTTTACATCAAAGCAGATCCAAGAT
15773426 GATTTGGCAT
Statistics
Matches: 219, Mismatches: 18, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
174 14 0.06
175 1 0.00
176 204 0.93
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (176 bp):
AGCAAATCAAAGACATAGCAGATCTGACTTTCAGAGGTTTTTACATCAAAGCAGATCCAAGATAA
CAGATCGAGCATCTCCATATTCGACGGAGAGCAGACACATAACAGATCTAACCTTCAGATGTTTA
TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGA
Found at i:15776336 original size:24 final size:24
Alignment explanation
Indices: 15776304--15776411 Score: 74
Period size: 24 Copynumber: 4.5 Consensus size: 24
15776294 ATTTCAGCAA
* **
15776304 TATGTGTGCGAGGTTATGCGGCAC
1 TATGTGTGCGAGATTACACGGCAC
* * * *
15776328 TATGTGTGCAAAAACTACATGGCAC
1 TATGTGTGC-GAGATTACACGGCAC
* **
15776353 TATGTGTGCGAGATTATATAGCAC
1 TATGTGTGCGAGATTACACGGCAC
* * *
15776377 TATGTGTGCGAGGA-AACGCGACAC
1 TATGTGTGCGA-GATTACACGGCAC
15776401 TATGTGTGCGA
1 TATGTGTGCGA
15776412 ATGAGTAAGA
Statistics
Matches: 64, Mismatches: 18, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
24 45 0.70
25 19 0.30
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (24 bp):
TATGTGTGCGAGATTACACGGCAC
Found at i:15777955 original size:18 final size:17
Alignment explanation
Indices: 15777932--15777994 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
15777922 TATTTGTAAC
15777932 ATTATATATATAAATTTT
1 ATTATAT-TATAAATTTT
*
15777950 ATTATATGTTATATATTTTT
1 ATTATA--TTATA-AATTTT
**
15777970 ATTATATTATTTATTTT
1 ATTATATTATAAATTTT
15777987 ATTATATT
1 ATTATATT
15777995 TTTATATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 12 0.32
18 10 0.26
19 4 0.11
20 12 0.32
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTATATTATAAATTTT
Found at i:15777962 original size:23 final size:20
Alignment explanation
Indices: 15777946--15777993 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 20
15777936 TATATATAAA
15777946 TTTTATTATATGTTATATAT
1 TTTTATTATATGTTATATAT
*
15777966 TTTTATTATA--TTATTTA-
1 TTTTATTATATGTTATATAT
15777983 TTTTATTATAT
1 TTTTATTATAT
15777994 TTTTATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 10 0.38
18 6 0.23
20 10 0.38
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATTATATGTTATATAT
Found at i:15777971 original size:20 final size:18
Alignment explanation
Indices: 15777932--15778001 Score: 79
Period size: 18 Copynumber: 3.8 Consensus size: 18
15777922 TATTTGTAAC
* *
15777932 ATTATATATATAAATTTT
1 ATTATATTTATATATTTT
15777950 ATTATATGTTATATATTTTT
1 ATTATAT-TTATATA-TTTT
*
15777970 ATTATA-TTATTTATTTT
1 ATTATATTTATATATTTT
*
15777987 ATTATATTTTTATAT
1 ATTATATTTATATAT
15778002 GTAAAATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 10 0.23
18 19 0.43
19 5 0.11
20 10 0.23
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (18 bp):
ATTATATTTATATATTTT
Found at i:15778000 original size:25 final size:28
Alignment explanation
Indices: 15777948--15778001 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
15777938 TATATAAATT
*
15777948 TTATTATATGTTATATATTTTTATTATA
1 TTATTATATGTTATATATATTTATTATA
*
15777976 TTATT-TATTTTAT-TATATTT-TTATA
1 TTATTATATGTTATATATATTTATTATA
15778001 T
1 T
15778002 GTAAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.25
26 6 0.25
27 7 0.29
28 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (28 bp):
TTATTATATGTTATATATATTTATTATA
Found at i:15782845 original size:26 final size:26
Alignment explanation
Indices: 15782809--15782914 Score: 153
Period size: 26 Copynumber: 4.1 Consensus size: 26
15782799 GAAATGCCCG
*
15782809 TCATGGAACATTTACCTAAACCATTA
1 TCATGGAACATTTACCTAACCCATTA
15782835 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
* *
15782861 TCATGGAATATTTACCTAATCCA-TA
1 TCATGGAACATTTACCTAACCCATTA
*
15782886 TCAAT-TAACATTTACCTAACCCATTA
1 TC-ATGGAACATTTACCTAACCCATTA
15782912 TCA
1 TCA
15782915 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
25 20 0.28
26 52 0.72
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTA
Found at i:15782904 original size:51 final size:52
Alignment explanation
Indices: 15782809--15782914 Score: 162
Period size: 51 Copynumber: 2.1 Consensus size: 52
15782799 GAAATGCCCG
15782809 TCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTA
* * *
15782861 TCATGGAATATTTACCTAATCCA-TATCAAT-TAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAAACCATTATC-ATGGAACATTTACCTAACCCATTA
15782912 TCA
1 TCA
15782915 ATTTGTACCA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
51 27 0.54
52 23 0.46
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (52 bp):
TCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTA
Found at i:15792932 original size:26 final size:26
Alignment explanation
Indices: 15792902--15793034 Score: 221
Period size: 26 Copynumber: 5.1 Consensus size: 26
15792892 GAAATGCCCG
* *
15792902 TCATGGAACATTTACCTAAACCGTTA
1 TCATGGAACATTTACCTAACCCATTA
15792928 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
*
15792954 TCATGGAACGTTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
* *
15792980 TCATGGAATATTTACCTAATCCATTA
1 TCATGGAACATTTACCTAACCCATTA
15793006 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
15793032 TCA
1 TCA
15793035 ATTTGTACCA
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 99 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.32
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTA
Found at i:15802767 original size:27 final size:27
Alignment explanation
Indices: 15802737--15802914 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
15802727 ATATTGAGTC
* *
15802737 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
15802764 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
15802791 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
15802819 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
15802846 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
15802873 CGCACACTTAGTGCAACATAGTTAAAT
1 CGCACACTTAGTGCTACATAATCAACT
15802900 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
15802915 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:15802876 original size:82 final size:81
Alignment explanation
Indices: 15802758--15802913 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
15802748 TGCTATATAA
* *
15802758 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
15802823 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
15802840 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTTAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
15802904 CACTTAGTGC
65 CACTTAGTGC
15802914 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:15802903 original size:54 final size:54
Alignment explanation
Indices: 15802737--15802913 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
15802727 ATATTGAGTC
* * * *
15802737 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
15802791 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* ** *
15802846 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTTAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
15802900 CGCACACTTAGTGC
1 CGCACACTTAGTGC
15802914 TGTACAATTT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
54 56 0.54
55 45 0.44
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:15809794 original size:42 final size:43
Alignment explanation
Indices: 15809738--15809833 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 43
15809728 ACACACAGCC
15809738 AGAACACACGCCCAAGGGGCAAGCCGTGTGTCACATACAGCAT
1 AGAACACACGCCCAAGGGGCAAGCCGTGTGTCACATACAGCAT
* *
15809781 AGAA-ACATGCCCAAGGGGCAAGCCGTGTGTCACATACGGCAT
1 AGAACACACGCCCAAGGGGCAAGCCGTGTGTCACATACAGCAT
*
15809823 AG-ACAGACGCC
1 AGAACACACGCC
15809834 TGTTTGTCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
41 1 0.02
42 43 0.90
43 4 0.08
ACGTcount: A:0.32, C:0.29, G:0.27, T:0.11
Consensus pattern (43 bp):
AGAACACACGCCCAAGGGGCAAGCCGTGTGTCACATACAGCAT
Found at i:15812793 original size:14 final size:14
Alignment explanation
Indices: 15812757--15812795 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
15812747 ATATAAAGTA
15812757 AAACAAAAGAAAAAG
1 AAAC-AAAGAAAAAG
* *
15812772 AGAGAAAGAAAAAG
1 AAACAAAGAAAAAG
15812786 AAACAAAGAA
1 AAACAAAGAA
15812796 GGAGACGAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
14 18 0.90
15 2 0.10
ACGTcount: A:0.77, C:0.05, G:0.18, T:0.00
Consensus pattern (14 bp):
AAACAAAGAAAAAG
Found at i:15813100 original size:21 final size:21
Alignment explanation
Indices: 15813046--15813101 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
15813036 TATGAAATGG
* *
15813046 ATTGAATATTGATTATATTGA
1 ATTGATTATTGAATATATTGA
15813067 ATTGATT-TATGAATATATGTGA
1 ATTGATTAT-TGAATATAT-TGA
15813089 ATTG-TTATTGAAT
1 ATTGATTATTGAAT
15813102 TGAAATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 21 0.70
22 8 0.27
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (21 bp):
ATTGATTATTGAATATATTGA
Found at i:15813494 original size:5 final size:5
Alignment explanation
Indices: 15813467--15813523 Score: 51
Period size: 5 Copynumber: 11.2 Consensus size: 5
15813457 AGTGGAAAAG
* * * * *
15813467 TGAATT TGATT TGATT TGGAT TGAAT TGAAT GGAAT TGAAT TGAAT GGAAT
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT
*
15813518 GGAAT T
1 TGAAT T
15813524 ATGATTAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
5 40 0.93
6 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.40
Consensus pattern (5 bp):
TGAAT
Found at i:15813495 original size:15 final size:15
Alignment explanation
Indices: 15813486--15813523 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
15813476 TTTGATTTGG
15813486 ATTGAATTGAATGGA
1 ATTGAATTGAATGGA
15813501 ATTGAATTGAATGGA
1 ATTGAATTGAATGGA
*
15813516 ATGGAATT
1 ATTGAATT
15813524 ATGATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.34
Consensus pattern (15 bp):
ATTGAATTGAATGGA
Found at i:15814119 original size:45 final size:45
Alignment explanation
Indices: 15813932--15814126 Score: 219
Period size: 45 Copynumber: 4.3 Consensus size: 45
15813922 CTGTTACCGC
* * *
15813932 TACTGCTACTGTTATCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
** * * * *
15813977 TACTACTACTGTTATCGATTCGGCACTGTGTCTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * * *
15814022 TACTGTTACCATTACTGATTCGGCACTTTGTGTGTTGAACATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
** * *
15814067 TACTGTTACCGTTACCGATTCAACACTTTGTGTGTTGAATACTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
15814112 TATTGTTACTGTTAC
1 TACTGTTACCGTTAC
15814127 TATTCCGGAT
Statistics
Matches: 129, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 129 1.00
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:15814327 original size:18 final size:18
Alignment explanation
Indices: 15814306--15814496 Score: 135
Period size: 18 Copynumber: 10.6 Consensus size: 18
15814296 TAACTGATTA
15814306 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
15814324 TTACCGAATAACTGACTG
1 TTACTGAATAATTGACTG
*
15814342 TTACT-AGAT-ATTAGACTA
1 TTACTGA-ATAATT-GACTG
* * *
15814360 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
15814378 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
15814396 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
15814414 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* * *
15814432 CTACTAAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
15814451 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
15814468 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
15814486 TTAATGAATAA
1 TTACTGAATAA
15814497 CCGATCAATT
Statistics
Matches: 138, Mismatches: 21, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
17 19 0.14
18 103 0.75
19 16 0.12
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.36
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:15814346 original size:36 final size:36
Alignment explanation
Indices: 15814294--15814576 Score: 182
Period size: 36 Copynumber: 7.6 Consensus size: 36
15814284 AAAGGTATAA
* * *
15814294 AATAACTGATTATTACTGAATAATTGACTGTTACCG
1 AATAACTGACTGTTACTGAATAATTGACTGTTACTG
*
15814330 AATAACTGACTGTTACT-AGAT-ATTAGACTATTACTG
1 AATAACTGACTGTTACTGA-ATAATT-GACTGTTACTG
* * *
15814366 AATAACTGAATATTACTGAATAATTGA-TCATTACTG
1 AATAACTGACTGTTACTGAATAATTGACT-GTTACTG
* * * *
15814402 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTA
1 AATAACTGACTGTTACTGAAT-AATTGACTGTTACTG
* * *
15814438 AATAACTTAATAGTTACTGAAT-ATCTGA-TTTTACTG
1 AATAACTGACT-GTTACTGAATAAT-TGACTGTTACTG
* * **
15814474 AATAATTGACTGTTAATGAATAACCGATCAATTGATCGATACTG
1 AATAACTGACTGTTACTGAATAATTGA-C---TG-T---TACTG
** * * * *
15814518 AATAACTGGTTATTATTGAATAATTGATTGTTACCG
1 AATAACTGACTGTTACTGAATAATTGACTGTTACTG
15814554 AATAACTGACTGTTACTGAATAA
1 AATAACTGACTGTTACTGAATAA
15814577 ATAATTATTC
Statistics
Matches: 189, Mismatches: 38, Indels: 40
0.71 0.14 0.15
Matches are distributed among these distances:
35 17 0.09
36 123 0.65
37 19 0.10
39 1 0.01
40 3 0.02
41 1 0.01
44 25 0.13
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (36 bp):
AATAACTGACTGTTACTGAATAATTGACTGTTACTG
Found at i:15814556 original size:18 final size:18
Alignment explanation
Indices: 15814535--15814576 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
15814525 GGTTATTATT
* *
15814535 GAATAATTGATTGTTACC
1 GAATAACTGACTGTTACC
*
15814553 GAATAACTGACTGTTACT
1 GAATAACTGACTGTTACC
15814571 GAATAA
1 GAATAA
15814577 ATAATTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (18 bp):
GAATAACTGACTGTTACC
Found at i:15815906 original size:15 final size:16
Alignment explanation
Indices: 15815874--15815906 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
15815864 TCTTTGATCC
15815874 TTCTTTTCTTTCTCAT
1 TTCTTTTCTTTCTCAT
*
15815890 TTCTTTT-TTTCTTAT
1 TTCTTTTCTTTCTCAT
15815905 TT
1 TT
15815907 ATAAGGTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (16 bp):
TTCTTTTCTTTCTCAT
Found at i:15818286 original size:5 final size:5
Alignment explanation
Indices: 15818276--15818320 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
15818266 TTTTATGCGT
15818276 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
15818321 ATAGAAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:15823742 original size:52 final size:52
Alignment explanation
Indices: 15823676--15823775 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
15823666 TTACTATATT
15823676 TTTAAAACACTCTTAATTTATTTGTAAAATATAAAAACTCTAATAATAATTA
1 TTTAAAACACTCTTAATTTATTTGTAAAATATAAAAACTCTAATAATAATTA
* * * *
15823728 TTTAAAATATTCTTAATTTATTTGTGAAGTATAAAAACTCTAATAATA
1 TTTAAAACACTCTTAATTTATTTGTAAAATATAAAAACTCTAATAATA
15823776 GTTACCAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (52 bp):
TTTAAAACACTCTTAATTTATTTGTAAAATATAAAAACTCTAATAATAATTA
Found at i:15830267 original size:39 final size:39
Alignment explanation
Indices: 15830197--15830414 Score: 330
Period size: 39 Copynumber: 5.5 Consensus size: 39
15830187 ACAAAGCATG
* * * *
15830197 CGGGACTTTAAGCTCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
15830237 CGGGACTTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
15830277 CGGGACTTAGCCCGAATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
15830316 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
15830355 CGGGACTTAGCTCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
15830394 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
15830415 TTCTCCATTA
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 144 0.87
40 21 0.13
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:15832567 original size:27 final size:27
Alignment explanation
Indices: 15832537--15832590 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
15832527 TGTCATGTGA
* *
15832537 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
15832564 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
15832591 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:15835213 original size:39 final size:39
Alignment explanation
Indices: 15835114--15835215 Score: 177
Period size: 39 Copynumber: 2.6 Consensus size: 39
15835104 CATATTCACT
* *
15835114 TTTAAGCATATATCACATTACACATATAATCACATAAAA
1 TTTAAGCATATATCACAATACTCATATAATCACATAAAA
*
15835153 TTTAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAAAA
15835192 TTTAAGCATATATCACAATACTCA
1 TTTAAGCATATATCACAATACTCA
15835216 AAAACATGTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 60 1.00
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAAAA
Found at i:15835268 original size:15 final size:15
Alignment explanation
Indices: 15835248--15835290 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
15835238 ACATAATGGT
15835248 CACATATCATATAAA
1 CACATATCATATAAA
* *
15835263 CACATATCACAATACA
1 CACATATCA-TATAAA
15835279 CACATATTCATA
1 CACATA-TCATA
15835291 ATTTAAGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 9 0.39
16 11 0.48
17 3 0.13
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (15 bp):
CACATATCATATAAA
Found at i:15840027 original size:62 final size:59
Alignment explanation
Indices: 15839958--15840074 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 59
15839948 AGTGATTATC
* * *
15839958 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAACATTATATTATTTTAATAAGAT
*
15840020 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTATTTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAACATTATATTATTTTAATA
15840075 TTAAAGTGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.43
60 1 0.02
61 1 0.02
62 27 0.53
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAACATTATATTATTTTAATAAGAT
Found at i:15852015 original size:39 final size:40
Alignment explanation
Indices: 15851811--15852031 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
15851801 TTGAATGCTG
* * * * * *
15851811 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
15851851 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
15851891 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
15851931 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
15851971 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
15852010 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
15852032 CTTGAACGAG
Statistics
Matches: 159, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.21
40 118 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:15852053 original size:79 final size:80
Alignment explanation
Indices: 15851886--15852068 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
15851876 GTGCGAGATA
* * *
15851886 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
15851951 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
15851966 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
15852030 CACTT-GAACGAGGAG
66 CA-TTCGAACGAGGAG
* * *
15852045 CTATATCC-GGTTAAATTCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
15852069 TACGTGATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 13 0.15
79 44 0.51
80 29 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:15865252 original size:13 final size:13
Alignment explanation
Indices: 15865234--15865258 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15865224 GTAAGTGATT
15865234 TTGATGATTTTTC
1 TTGATGATTTTTC
15865247 TTGATGATTTTT
1 TTGATGATTTTT
15865259 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:15866147 original size:46 final size:47
Alignment explanation
Indices: 15866013--15866276 Score: 156
Period size: 46 Copynumber: 5.6 Consensus size: 47
15866003 TACGAGGGTG
* * *
15866013 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG-AGATG-AGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC--TGCAGATGTA-AGCC
*
15866061 AGTGTAAGA-CATGTTTGGGTCAT-GCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CTGC-AGATGTAAGCC
* *
15866107 AGTGTAAGA-CATGTGTGGGACAT-GCATCGGCTGCATGATGT--GTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCTGCA-GATGTAAGCC
* * * * *
15866151 AGTATAAGACCTTGTTTGGGACATGGCATCGG-TACGGATATGTGAGAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCT--GCAGATGT-A-AGCC
** * ** * *
15866201 AAAGTAAGACCATGCTTGGGACATGGCATCAACT-TA-ATGTGAGAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCTGCAGATGT-A-AGCC
* *
15866248 AGTGTAAGACCATGTCTGGGATATGGCAT
1 AGTGTAAGACCATGTTTGGGACATGGCAT
15866277 AGGCATTATA
Statistics
Matches: 176, Mismatches: 25, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
44 10 0.06
45 17 0.10
46 59 0.34
47 51 0.29
48 10 0.06
50 28 0.16
51 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCTGCAGATGTAAGCC
Found at i:15866220 original size:50 final size:46
Alignment explanation
Indices: 15866155--15866276 Score: 127
Period size: 47 Copynumber: 2.5 Consensus size: 46
15866145 TGTGTCAGTA
* *
15866155 TAAGACCTTGTTTGGGACATGGCATCGGTACGGATATGTGAGAGTCAAAG
1 TAAGACCATG-TTGGGACATGGCATC--AACGGA-ATGTGAGAGTCAAAG
** **
15866205 TAAGACCATGCTTGGGACATGGCATCAACTTAATGTGAGAGTCAGTG
1 TAAGACCATG-TTGGGACATGGCATCAACGGAATGTGAGAGTCAAAG
*
15866252 TAAGACCATGTCTGGGATATGGCAT
1 TAAGACCATGT-TGGGACATGGCAT
15866277 AGGCATTATA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
46 1 0.02
47 35 0.56
48 3 0.05
50 24 0.38
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.26
Consensus pattern (46 bp):
TAAGACCATGTTGGGACATGGCATCAACGGAATGTGAGAGTCAAAG
Found at i:15867287 original size:28 final size:28
Alignment explanation
Indices: 15867255--15867310 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
15867245 CAAGGTTTTT
15867255 AGACACAGACGTGTCAT-GGCCGTGTGAG
1 AGACACAGACGTGT-ATAGGCCGTGTGAG
* *
15867283 AGACACGGGCGTGTATCAGGCCGTGTGA
1 AGACACAGACGTGTAT-AGGCCGTGTGA
15867311 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 2 0.08
28 12 0.50
29 10 0.42
ACGTcount: A:0.23, C:0.21, G:0.38, T:0.18
Consensus pattern (28 bp):
AGACACAGACGTGTATAGGCCGTGTGAG
Found at i:15867379 original size:13 final size:13
Alignment explanation
Indices: 15867345--15867381 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
15867335 AATTTAATTC
*
15867345 ACACGGGCATGGG
1 ACACGGGCGTGGG
15867358 ACACGGGCGTGGG
1 ACACGGGCGTGGG
15867371 ACACGGGCGTG
1 ACACGGGCGTG
15867382 TCCCTAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.19, C:0.24, G:0.49, T:0.08
Consensus pattern (13 bp):
ACACGGGCGTGGG
Found at i:15867760 original size:24 final size:24
Alignment explanation
Indices: 15867731--15867779 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
15867721 GTATCAAAGC
15867731 ATGGTTTAGTCAGTTCTAGGACTA
1 ATGGTTTAGTCAGTTCTAGGACTA
15867755 ATGGTTTAGTCAGTTCTAGGACTA
1 ATGGTTTAGTCAGTTCTAGGACTA
15867779 A
1 A
15867780 CCTAGCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (24 bp):
ATGGTTTAGTCAGTTCTAGGACTA
Found at i:15873030 original size:13 final size:13
Alignment explanation
Indices: 15873012--15873036 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15873002 GTAAGTGATT
15873012 TTGATGATTTTTC
1 TTGATGATTTTTC
15873025 TTGATGATTTTT
1 TTGATGATTTTT
15873037 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:15873815 original size:47 final size:48
Alignment explanation
Indices: 15873745--15874105 Score: 216
Period size: 47 Copynumber: 7.7 Consensus size: 48
15873735 TTTGTGTGCT
*
15873745 AGTGTAAGA-CATGTCTGGCACAT-GCATCGGCCACATTGTAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTGTAAGAGCC
* * *
15873791 AGTGTAAGACCATGTCTGGGACATGGCATTGG---CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTG-TA--AGAGCC
* * * *
15873839 AGTGTAAGA-CATGTCTTGGACAT-GCATTGGCCTCGAGATGT-A-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-A-TTGTAAGAGCC
* ** * * *
15873885 AGTGTAAGA-CATGTCTGGGATAT-GCATCGGTTACA-TG-ATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTGTAAGAGCC
* * * * *
15873929 AGTATAAGACCATGTCTGGGACATGGCATCGG-CATGGATACGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA--CAT-TGTAAGAGCC
* ** * * * *
15873979 AGTGTAAGACCATGCCTGGGACATGGCATCAACTTA-A-CGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CACATTGTAAGAGCC
* * * ** **
15874026 AGTGTAAGACCATGTTTGGGACATGGCGTC-GACTTAGCGTAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTGTAAGAGCC
*
15874073 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
15874106 ATTATACCCT
Statistics
Matches: 248, Mismatches: 43, Indels: 46
0.74 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 10 0.04
45 20 0.08
46 56 0.23
47 100 0.40
48 21 0.08
49 3 0.01
50 33 0.13
51 2 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTGTAAGAGCC
Found at i:15873889 original size:46 final size:47
Alignment explanation
Indices: 15873745--15873911 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 47
15873735 TTTGTGTGCT
* * * *
15873745 AGTGTAAGACATGTCTGGCACATGCATCGGCCAC-A-TTGTAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGT-AGAGCC
* * * *
15873791 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGATGTAGAGCC
*
15873839 AGTGTAAGACATGTCTTGGACATGCATTGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGTAGAGCC
*
15873885 AGTGTAAGACATGTCTGGGATATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
15873912 CGGTTACATG
Statistics
Matches: 101, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 51 0.50
47 27 0.27
48 21 0.21
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGTAGAGCC
Found at i:15873983 original size:140 final size:141
Alignment explanation
Indices: 15873745--15874003 Score: 346
Period size: 140 Copynumber: 1.8 Consensus size: 141
15873735 TTTGTGTGCT
*
15873745 AGTGTAAGACATGTCTGGCACATGCATCGGCCACATTGTAAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGCACATGCATCGGCCACATTGTAAGAGCCAGTATAAGACCATGTCTGG
* * * *
15873810 GACATGGCATTGGCATTGAGACGAGAGCTAGTGTAAGA-CATGTCTTGGACATGCATTGGCCTCG
66 GACATGGCATCGGCATGGAGACGAGAGCTAGTGTAAGACCATGCCTGGGACATGCATTGGCCTCG
15873874 AGATGTAAGCC
131 AGATGTAAGCC
* * ** * * *
15873885 AGTGTAAGACATGTCTGGGATATGCATCGGTTACA-TG-ATGTGTCAGTATAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGCACATGCATCGGCCACATTGTAAGAGCCAGTATAAGACCATGTCTGG
*
15873948 GACATGGCATCGGCATGGATACGTGAGAG-TCAGTGTAAGACCATGCCTGGGACATG
66 GACATGGCATCGGCATGGAGAC--GAGAGCT-AGTGTAAGACCATGCCTGGGACATG
15874004 GCATCAACTT
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
138 41 0.40
139 3 0.03
140 45 0.44
141 13 0.13
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGCACATGCATCGGCCACATTGTAAGAGCCAGTATAAGACCATGTCTGG
GACATGGCATCGGCATGGAGACGAGAGCTAGTGTAAGACCATGCCTGGGACATGCATTGGCCTCG
AGATGTAAGCC
Found at i:15886287 original size:40 final size:39
Alignment explanation
Indices: 15886233--15886314 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 39
15886223 GACTTATCGA
* *
15886233 CTAAAATGGCACTTAGTGTG-AGGTTCGAAATAGCTTCGG
1 CTAAAATGACACTTAGTGTGCA-ATTCGAAATAGCTTCGG
* *
15886272 CTAAAAGTGACACTTAGTGTGCAATTTGAGATAGCTTCGG
1 CTAAAA-TGACACTTAGTGTGCAATTCGAAATAGCTTCGG
15886312 CTA
1 CTA
15886315 TATTTATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 6 0.16
40 30 0.81
41 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (39 bp):
CTAAAATGACACTTAGTGTGCAATTCGAAATAGCTTCGG
Found at i:15894714 original size:25 final size:25
Alignment explanation
Indices: 15894686--15894733 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
15894676 TTATAATGTG
* *
15894686 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
15894711 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
15894734 GATATGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:15894786 original size:10 final size:10
Alignment explanation
Indices: 15894773--15894811 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
15894763 CTGTTTTATA
15894773 CATGATATGC
1 CATGATATGC
15894783 CATGATATGC
1 CATGATATGC
15894793 ACATGATATGC
1 -CATGATATGC
15894804 CATGATAT
1 CATGATAT
15894812 ATTCATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:15894798 original size:21 final size:21
Alignment explanation
Indices: 15894772--15894811 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
15894762 ACTGTTTTAT
15894772 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
15894793 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
15894812 ATTCATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:15894891 original size:25 final size:25
Alignment explanation
Indices: 15894857--15894926 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
15894847 GAGGAAGTGC
* *
15894857 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
15894882 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
15894907 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
15894927 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:15894939 original size:24 final size:24
Alignment explanation
Indices: 15894856--15894953 Score: 85
Period size: 25 Copynumber: 4.0 Consensus size: 24
15894846 GGAGGAAGTG
* *
15894856 CAAAAG-GGCTTTGCCCTAGTTTAC
1 CAAAAGAGGCTTTGCCCCAG-TTAT
15894880 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAG-TTAT
15894905 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
15894929 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
15894954 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
24 20 0.31
25 44 0.69
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:15894950 original size:50 final size:50
Alignment explanation
Indices: 15894857--15894951 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
15894847 GAGGAAGTGC
* **
15894857 AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
15894907 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
15894952 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:15902516 original size:25 final size:25
Alignment explanation
Indices: 15902488--15902538 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
15902478 CTCTTATAAT
* *
15902488 GTGAAAATGACCATTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
15902513 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
15902538 G
1 G
15902539 GATATGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:15902591 original size:10 final size:10
Alignment explanation
Indices: 15902578--15902616 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
15902568 CTGTTTTATA
15902578 CATGATATGC
1 CATGATATGC
15902588 CATGATATGC
1 CATGATATGC
15902598 ACATGATATGC
1 -CATGATATGC
15902609 CATGATAT
1 CATGATAT
15902617 ATTCATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:15902603 original size:21 final size:21
Alignment explanation
Indices: 15902577--15902616 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
15902567 ACTGTTTTAT
15902577 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
15902598 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
15902617 ATTCATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:15902696 original size:25 final size:25
Alignment explanation
Indices: 15902662--15902731 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
15902652 GAGGAAGTGC
*
15902662 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
15902687 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
15902712 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
15902732 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:15902744 original size:24 final size:24
Alignment explanation
Indices: 15902661--15902744 Score: 116
Period size: 25 Copynumber: 3.4 Consensus size: 24
15902651 GGAGGAAGTG
*
15902661 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAT
15902685 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
15902710 CAAAAAGGGCTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
*
15902734 TAAAAGAGGCT
1 CAAAAG-GGCT
15902745 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
23 5 0.09
24 9 0.16
25 41 0.75
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:15902755 original size:50 final size:50
Alignment explanation
Indices: 15902662--15902756 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
15902652 GAGGAAGTGC
**
15902662 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
15902712 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
15902757 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:15913947 original size:43 final size:42
Alignment explanation
Indices: 15913899--15914068 Score: 157
Period size: 43 Copynumber: 4.0 Consensus size: 42
15913889 GTTATCGAGA
*
15913899 TGTGATTAGATGTAAGACAATGTCTAGGACATTGGCATTGTAT
1 TGTGATTAG-TGTAAGACCATGTCTAGGACATTGGCATTGTAT
* * *
15913942 TGTGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTTAT
1 TGTGATTA-GTGTAAGACCATGTCTAGGACATTGGCATTG-TAT
* * *
15913986 T-TGATTTCGTGTAAGACCTTGTCTAGGACAGTGGCATTG-AT
1 TGTGA-TTAGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
* * * * *
15914027 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 -TGTGATTA-GTGTAAGACCATGTCTAGGACATTGGCATTGTA
15914069 CAAGTTATAT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 10 0.10
43 84 0.82
44 7 0.07
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (42 bp):
TGTGATTAGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
Found at i:15914359 original size:35 final size:35
Alignment explanation
Indices: 15914319--15914389 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
15914309 TATTCATATG
15914319 ATGACTTTATTTGTATATGGATTACTAAGCTTTTA
1 ATGACTTTATTTGTATATGGATTACTAAGCTTTTA
15914354 ATGACTTTATTTGTATATGGATTACTAAGCTTTTA
1 ATGACTTTATTTGTATATGGATTACTAAGCTTTTA
15914389 A
1 A
15914390 AGCTTACTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.48
Consensus pattern (35 bp):
ATGACTTTATTTGTATATGGATTACTAAGCTTTTA
Found at i:15916856 original size:21 final size:20
Alignment explanation
Indices: 15916828--15916867 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
15916818 CAAAACTTGT
15916828 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
15916848 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
15916868 AAAATACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:15917861 original size:15 final size:15
Alignment explanation
Indices: 15917841--15917883 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
15917831 AAGTAACTTC
15917841 AATAATAATGAAAAT
1 AATAATAATGAAAAT
15917856 AATAATAAT-AAAGAT
1 AATAATAATGAAA-AT
15917871 AATAA-AATGAAAA
1 AATAATAATGAAAA
15917884 CAAAATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (15 bp):
AATAATAATGAAAAT
Found at i:15921289 original size:39 final size:39
Alignment explanation
Indices: 15921235--15921313 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
15921225 TCAATAGTGC
15921235 AAATATTTTAAGGTTGGAATTATCTAGAAACTAAGGAAA
1 AAATATTTTAAGGTTGGAATTATCTAGAAACTAAGGAAA
15921274 AAATATTTTAAGGTTGGAATTATCTAGAAACTAAGGAAA
1 AAATATTTTAAGGTTGGAATTATCTAGAAACTAAGGAAA
15921313 A
1 A
15921314 TGGATTAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.30
Consensus pattern (39 bp):
AAATATTTTAAGGTTGGAATTATCTAGAAACTAAGGAAA
Found at i:15921534 original size:22 final size:18
Alignment explanation
Indices: 15921503--15921555 Score: 52
Period size: 22 Copynumber: 2.7 Consensus size: 18
15921493 AATAAATAAA
*
15921503 TATTAGTTTATTAATATTT
1 TATTATTTTATT-ATATTT
15921522 TGATTTGATTTTAATTATATTT
1 T-A-TT-ATTTT-ATTATATTT
15921544 TATTATTTTATT
1 TATTATTTTATT
15921556 TAGTATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
18 3 0.10
19 6 0.21
20 3 0.10
21 3 0.10
22 11 0.38
23 3 0.10
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (18 bp):
TATTATTTTATTATATTT
Found at i:15923618 original size:101 final size:101
Alignment explanation
Indices: 15923439--15923667 Score: 296
Period size: 101 Copynumber: 2.3 Consensus size: 101
15923429 GAATTGATGG
* *
15923439 ATAAGACCATGGTTGGACCATGGCAATATTTATATGTAAGACCATAGCTGGGCTATGGCATTTTA
1 ATAAGACCATGGTTGGACCATGGCAATATTTATAAGTAAGACCATAGCTGGGCTATGGCATTCTA
**
15923504 ATGAAAATTCCATAACTAGTTTATGGCACTTTGAAC
66 ATGAAAAGACCATAACTAGTTTATGGCACTTTGAAC
* * *
15923540 ATAAGACCATGGTTGGACCATGGCAGTATTTATAAGTAAGACCATAGTTGGGCTATGGCATTCTG
1 ATAAGACCATGGTTGGACCATGGCAATATTTATAAGTAAGACCATAGCTGGGCTATGGCATTCTA
* * * * ** *
15923605 ATGATAAGACCATAACTGGGTTATGACACTACGAAT
66 ATGAAAAGACCATAACTAGTTTATGGCACTTTGAAC
* * * *
15923641 GTAAGATCATGGCTGGGCCATGGCAAT
1 ATAAGACCATGGTTGGACCATGGCAAT
15923668 GCATGTGTAA
Statistics
Matches: 109, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 109 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (101 bp):
ATAAGACCATGGTTGGACCATGGCAATATTTATAAGTAAGACCATAGCTGGGCTATGGCATTCTA
ATGAAAAGACCATAACTAGTTTATGGCACTTTGAAC
Found at i:15926654 original size:49 final size:49
Alignment explanation
Indices: 15926488--15926712 Score: 297
Period size: 49 Copynumber: 4.5 Consensus size: 49
15926478 TGAGGTCGCA
* * * * *
15926488 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * * **
15926539 TGTGTATTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
15926589 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
15926638 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
15926687 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
15926713 TGCGTACCAG
Statistics
Matches: 155, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 79 0.51
50 44 0.28
51 32 0.21
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:15926669 original size:99 final size:100
Alignment explanation
Indices: 15926481--15926720 Score: 313
Period size: 99 Copynumber: 2.4 Consensus size: 100
15926471 TCTATTGTGA
* * *
15926481 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* **
15926546 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
15926581 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTA
*
15926644 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
15926680 GGTCGCATGTGTAGTACTATGTGCAAGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
15926721 AGATAGGTTT
Statistics
Matches: 121, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 35 0.29
99 44 0.36
100 1 0.01
101 41 0.34
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:15929416 original size:46 final size:45
Alignment explanation
Indices: 15929349--15929523 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
15929339 TGTAACCCGC
* * *
15929349 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTAT
* *
15929395 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGTAT
* * * * * *
15929441 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTAT
*
15929488 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
15929524 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
45 2 0.02
46 65 0.62
47 33 0.32
48 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGTAT
Found at i:15929516 original size:93 final size:93
Alignment explanation
Indices: 15929357--15929527 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
15929347 GCCCATAAGT
* * * * *
15929357 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
15929422 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
15929450 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
15929515 CGAGTTCGGATGC
66 CGAGTTCGGATGC
15929528 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:15929982 original size:30 final size:30
Alignment explanation
Indices: 15929948--15930007 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
15929938 ATTTAATACG
*
15929948 AACTTTGGAAAAATTATACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
15929978 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
15930008 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:15949812 original size:16 final size:16
Alignment explanation
Indices: 15949791--15949827 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
15949781 AATATTTATG
15949791 ATATTTATTAATAATT
1 ATATTTATTAATAATT
* *
15949807 ATATTTATTATTTATT
1 ATATTTATTAATAATT
15949823 ATATT
1 ATATT
15949828 AAAATAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATATTTATTAATAATT
Found at i:15951039 original size:16 final size:16
Alignment explanation
Indices: 15951018--15951049 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15951008 AATTTATTTA
*
15951018 AATTAATTAATTTTCT
1 AATTAAATAATTTTCT
15951034 AATTAAATAATTTTCT
1 AATTAAATAATTTTCT
15951050 TAACCGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTAAATAATTTTCT
Found at i:15957710 original size:25 final size:26
Alignment explanation
Indices: 15957664--15957721 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
15957654 TTTAATTAAA
* * * *
15957664 TAAAAATATTAATGATTCAATAAATT
1 TAAAAATATAAATAATTAAATAAAAT
15957690 TAAAAATA-AAATAATTAAATAAAAT
1 TAAAAATATAAATAATTAAATAAAAT
15957715 TAAAAAT
1 TAAAAAT
15957722 TTAGGAGAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (26 bp):
TAAAAATATAAATAATTAAATAAAAT
Found at i:15958352 original size:17 final size:18
Alignment explanation
Indices: 15958325--15958358 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15958315 AATTAAATAT
15958325 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
15958343 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
15958359 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:15979831 original size:55 final size:54
Alignment explanation
Indices: 15979744--15979998 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
15979734 ATTAGGGTTT
* *
15979744 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * * *
15979799 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGG-C
* * *
15979855 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * *
15979907 AAGGATACCATGTAAGACCATGTCGAGACATGACAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * * *
15979956 AAGGATACCATATAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
15979999 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
52 6 0.04
53 42 0.25
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:15979950 original size:108 final size:110
Alignment explanation
Indices: 15979751--15979953 Score: 313
Period size: 108 Copynumber: 1.9 Consensus size: 110
15979741 TTTAAGGATA
*
15979751 CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
15979816 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGTAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGTAAAGGTC
* *
15979861 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
15979923 ACCATGTCGAGACATGACAATGGTAAGTTTC
65 ACCATGTCAAGACATGACAATGATAAGTTTC
15979954 AAAAGGATAC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.58
109 6 0.07
110 27 0.32
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGTAAAGGTC
Found at i:15985712 original size:29 final size:29
Alignment explanation
Indices: 15985670--15985728 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
15985660 ACACCCTAAG
* *
15985670 TGCCACATATATAGCCGAAGCTATCTCAA
1 TGCCACATATATAGACAAAGCTATCTCAA
15985699 TGCCACATATATAGACAAAGCTATCTCAA
1 TGCCACATATATAGACAAAGCTATCTCAA
15985728 T
1 T
15985729 CTCATATCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (29 bp):
TGCCACATATATAGACAAAGCTATCTCAA
Found at i:15991930 original size:21 final size:21
Alignment explanation
Indices: 15991906--15991951 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
15991896 GGCTGCAGGG
15991906 CTTCCTCATCTTCATCTTCTT
1 CTTCCTCATCTTCATCTTCTT
*
15991927 CTTCCTCATCTTCATTTTCTT
1 CTTCCTCATCTTCATCTTCTT
15991948 CTTC
1 CTTC
15991952 TTCAACATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.09, C:0.37, G:0.00, T:0.54
Consensus pattern (21 bp):
CTTCCTCATCTTCATCTTCTT
Found at i:15991975 original size:15 final size:15
Alignment explanation
Indices: 15991957--15992023 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
15991947 TCTTCTTCAA
* *
15991957 CATCCTCTTCATCCT
1 CATCCTCGTCATCAT
15991972 CATCCTC-TCCATCAT
1 CATCCTCGT-CATCAT
* *
15991987 CATCGTCGTCGTCAT
1 CATCCTCGTCATCAT
* * *
15992002 CCTCGTCGTCATCCT
1 CATCCTCGTCATCAT
15992017 CATCCTC
1 CATCCTC
15992024 ATCCTCAGGG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
14 1 0.02
15 40 0.95
16 1 0.02
ACGTcount: A:0.13, C:0.45, G:0.07, T:0.34
Consensus pattern (15 bp):
CATCCTCGTCATCAT
Found at i:15991976 original size:6 final size:6
Alignment explanation
Indices: 15991965--15992030 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
15991955 AACATCCTCT
* * * * * *
15991965 TCATCC TCATCC TC-T-C -CATCA TCATCG TCGTCG TCATCC TCGTCG
1 TCATCC TCATCC TCATCC TCATCC TCATCC TCATCC TCATCC TCATCC
15992010 TCATCC TCATCC TCATCC TCA
1 TCATCC TCATCC TCATCC TCA
15992031 GGGTCTTCAC
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
3 1 0.02
4 2 0.04
5 1 0.02
6 44 0.92
ACGTcount: A:0.15, C:0.44, G:0.08, T:0.33
Consensus pattern (6 bp):
TCATCC
Found at i:15992838 original size:26 final size:26
Alignment explanation
Indices: 15992788--15992840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15992778 ATATATATAT
**
15992788 ATGTTTAATATATTTAAAATTATAAA
1 ATGTTTAATATATTTAAAACAATAAA
15992814 ATGTTTAATATATTTAAAACAATAAA
1 ATGTTTAATATATTTAAAACAATAAA
15992840 A
1 A
15992841 CAAGTGGTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (26 bp):
ATGTTTAATATATTTAAAACAATAAA
Found at i:15995461 original size:17 final size:17
Alignment explanation
Indices: 15995439--15995480 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
15995429 TCCAAATGAA
15995439 AGAAAAAAAATA-GAGTG
1 AGAAAAAAAATATGAG-G
15995456 AGAAAAAAAATATGAGG
1 AGAAAAAAAATATGAGG
15995473 -GAAAAAAA
1 AGAAAAAAA
15995481 TTAGTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.33
17 13 0.54
18 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.21, T:0.10
Consensus pattern (17 bp):
AGAAAAAAAATATGAGG
Found at i:15997782 original size:22 final size:22
Alignment explanation
Indices: 15997730--15997782 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
15997720 ATCAATACTT
**
15997730 AAAAAAAGATTCTTTTGTTGTTC
1 AAAAAAA-ATTCTTTTGTTGACC
15997753 AAAAAAAATTCTTTTG-TGACC
1 AAAAAAAATTCTTTTGTTGACC
15997774 AAAATAAAA
1 AAAA-AAAA
15997783 ATGACATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 7 0.26
22 13 0.48
23 7 0.26
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.34
Consensus pattern (22 bp):
AAAAAAAATTCTTTTGTTGACC
Found at i:15999518 original size:23 final size:23
Alignment explanation
Indices: 15999490--15999533 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
15999480 ATACACTATA
15999490 AATTTTAACCTGTTGTAATAAAT
1 AATTTTAACCTGTTGTAATAAAT
* * *
15999513 AATTTTCACTTGTTTTAATAA
1 AATTTTAACCTGTTGTAATAA
15999534 TATTTGTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (23 bp):
AATTTTAACCTGTTGTAATAAAT
Found at i:16006114 original size:36 final size:36
Alignment explanation
Indices: 16006063--16006139 Score: 129
Period size: 36 Copynumber: 2.2 Consensus size: 36
16006053 TATTAATGCA
* *
16006063 TTAT-TAGTTTGTACTGTAACTCTGTTTGTTTGTTC
1 TTATCTAGTTTGTACTGTAACTATGTTTGTTTATTC
16006098 TTATCTAGTTTGTACTGTAACTATGTTTGTTTATTC
1 TTATCTAGTTTGTACTGTAACTATGTTTGTTTATTC
16006134 TTATCT
1 TTATCT
16006140 CCTTTGCCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 4 0.10
36 35 0.90
ACGTcount: A:0.17, C:0.12, G:0.14, T:0.57
Consensus pattern (36 bp):
TTATCTAGTTTGTACTGTAACTATGTTTGTTTATTC
Found at i:16010417 original size:25 final size:26
Alignment explanation
Indices: 16010394--16010475 Score: 87
Period size: 25 Copynumber: 3.1 Consensus size: 26
16010384 AATATAATTT
16010394 TTTTTATAAATTCATTAAAAAATTATA
1 TTTTTAT-AATTCATTAAAAAATTATA
* * * *
16010421 TATTT-TAATTCTTTTATAAATTATA
1 TTTTTATAATTCATTAAAAAATTATA
16010446 TTTTTATGAATTCATT-AAAAATATATA
1 TTTTTAT-AATTCATTAAAAAAT-TATA
16010473 TTT
1 TTT
16010476 CAAAAAATTA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
25 20 0.44
26 7 0.16
27 18 0.40
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (26 bp):
TTTTTATAATTCATTAAAAAATTATA
Found at i:16010515 original size:15 final size:14
Alignment explanation
Indices: 16010490--16010523 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
16010480 AAATTATATA
*
16010490 AAATATTTAAAAAT
1 AAATTTTTAAAAAT
16010504 ATAATTTTTAAAAAT
1 A-AATTTTTAAAAAT
16010519 AAATT
1 AAATT
16010524 GTAATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTTTTAAAAAT
Found at i:16019389 original size:19 final size:20
Alignment explanation
Indices: 16019361--16019400 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
16019351 CAATAAATGA
*
16019361 ATACATATGTAT-AAATAAT
1 ATACACATGTATAAAATAAT
16019380 ATACACATGTATAAAATAAT
1 ATACACATGTATAAAATAAT
16019400 A
1 A
16019401 AATAAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (20 bp):
ATACACATGTATAAAATAAT
Found at i:16019538 original size:12 final size:13
Alignment explanation
Indices: 16019516--16019545 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
16019506 AACATAAGGA
16019516 AAAAGAGAGAAAG
1 AAAAGAGAGAAAG
16019529 AAAA-AGAGAAAG
1 AAAAGAGAGAAAG
16019541 AAAAG
1 AAAAG
16019546 TGAAGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (13 bp):
AAAAGAGAGAAAG
Found at i:16020678 original size:45 final size:45
Alignment explanation
Indices: 16020627--16020719 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
16020617 AATGAGTATT
16020627 TGTGAATTAAATATGAATAATCAATATTATAATTCAAGTGATATG
1 TGTGAATTAAATATGAATAATCAATATTATAATTCAAGTGATATG
16020672 TGTGAATTAAATATGAATAATCAATATTATAATTCAAGTGATATG
1 TGTGAATTAAATATGAATAATCAATATTATAATTCAAGTGATATG
16020717 TGT
1 TGT
16020720 TGATATTGTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.39
Consensus pattern (45 bp):
TGTGAATTAAATATGAATAATCAATATTATAATTCAAGTGATATG
Done.