Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 59 of 344
Found at i:19013771 original size:26 final size:26
Alignment explanation
Indices: 19013737--19013798 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
19013727 AAAAATACAT
19013737 AAAAATAAATACCGAAATGGATTTAC
1 AAAAATAAATACCGAAATGGATTTAC
*
19013763 AAAAATAAATACCGAAATGGGTTTAC
1 AAAAATAAATACCGAAATGGATTTAC
19013789 AAAAATAAAT
1 AAAAATAAAT
19013799 CCACATATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.56, C:0.10, G:0.11, T:0.23
Consensus pattern (26 bp):
AAAAATAAATACCGAAATGGATTTAC
Found at i:19025386 original size:29 final size:29
Alignment explanation
Indices: 19025354--19025428 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
19025344 GATTTTGTCC
*
19025354 TTTTTACTTTTAT-TTTTATTTTTTTTAAG
1 TTTTTACTTTT-TCTTTTATTCTTTTTAAG
* *
19025383 TTTTGT-CTTTTTCTTTTATTCTTTTTCAT
1 TTTT-TACTTTTTCTTTTATTCTTTTTAAG
**
19025412 TTTTTAAGTTTTCTTTT
1 TTTTTACTTTTTCTTTT
19025429 TTTTAACTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 2 0.05
29 35 0.92
30 1 0.03
ACGTcount: A:0.12, C:0.08, G:0.04, T:0.76
Consensus pattern (29 bp):
TTTTTACTTTTTCTTTTATTCTTTTTAAG
Found at i:19025429 original size:35 final size:36
Alignment explanation
Indices: 19025346--19025423 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 36
19025336 CTTCTGTTGA
19025346 TTTTGTCCTTTTTACTTTTATTTTTATTTTTTTTAAG
1 TTTTGT-CTTTTTACTTTTATTTTTATTTTTTTTAAG
19025383 TTTTGTCTTTTT-CTTTTATTCTTT-TTCATTTTTTAAG
1 TTTTGTCTTTTTACTTTTATT-TTTATT--TTTTTTAAG
19025420 TTTT
1 TTTT
19025424 CTTTTTTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
35 10 0.26
36 9 0.24
37 19 0.50
ACGTcount: A:0.12, C:0.09, G:0.05, T:0.74
Consensus pattern (36 bp):
TTTTGTCTTTTTACTTTTATTTTTATTTTTTTTAAG
Found at i:19025431 original size:37 final size:35
Alignment explanation
Indices: 19025354--19025431 Score: 95
Period size: 37 Copynumber: 2.2 Consensus size: 35
19025344 GATTTTGTCC
* *
19025354 TTTTTACTTTTATTTTTATTTTTTTTAAGTTTTGT
1 TTTTTTCTTTTATTTTTATTTTTTTTAAGTTTTCT
*
19025389 CTTTTTCTTTTATTCTTT-TTCATTTTTTAAGTTTTCT
1 TTTTTTCTTTTATT-TTTATT--TTTTTTAAGTTTTCT
19025426 TTTTTT
1 TTTTTT
19025432 TAACTTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
35 14 0.39
36 3 0.08
37 19 0.53
ACGTcount: A:0.12, C:0.08, G:0.04, T:0.77
Consensus pattern (35 bp):
TTTTTTCTTTTATTTTTATTTTTTTTAAGTTTTCT
Found at i:19025446 original size:17 final size:17
Alignment explanation
Indices: 19025424--19025458 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
19025414 TTTAAGTTTT
*
19025424 CTTTTTTTTAACTTTTAA
1 CTTTTTCTTAA-TTTTAA
19025442 CTTTTTCTTAATTTTAA
1 CTTTTTCTTAATTTTAA
19025459 AAAAAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (17 bp):
CTTTTTCTTAATTTTAA
Found at i:19025670 original size:22 final size:20
Alignment explanation
Indices: 19025635--19025675 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
19025625 TTATATTATT
*
19025635 AAAAATTATATTTAACATTTA
1 AAAAATAATATTTAA-ATTTA
19025656 AAAAATAATATTTTAAATTT
1 AAAAATAATA-TTTAAATTT
19025676 TAAATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
AAAAATAATATTTAAATTTA
Found at i:19025810 original size:20 final size:20
Alignment explanation
Indices: 19025785--19025839 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
19025775 AATAATAAAT
*
19025785 AAAATATATTT-AATATTTAA
1 AAAATAAATTTAAAT-TTTAA
19025805 AAAATAAATTTTAAATTTTAA
1 AAAATAAA-TTTAAATTTTAA
* *
19025826 AATATACATTTAAA
1 AAAATAAATTTAAA
19025840 ATATTATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 13 0.43
21 14 0.47
22 3 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAATAAATTTAAATTTTAA
Found at i:19025817 original size:21 final size:21
Alignment explanation
Indices: 19025785--19025850 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
19025775 AATAATAAAT
*
19025785 AAAATATA-TTTAATATTTAA
1 AAAATAAATTTTAATATTTAA
19025805 AAAATAAATTTTAA-ATTTTAA
1 AAAATAAATTTTAATA-TTTAA
* * *
19025826 AATATACATTTAAAATATTATAA
1 AAAATAAATTT-TAATATT-TAA
19025849 AA
1 AA
19025851 CTAATAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
20 8 0.22
21 19 0.51
22 4 0.11
23 6 0.16
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAATAAATTTTAATATTTAA
Found at i:19025928 original size:21 final size:21
Alignment explanation
Indices: 19025788--19025960 Score: 73
Period size: 20 Copynumber: 8.4 Consensus size: 21
19025778 AATAAATAAA
19025788 ATATATTTAATATTTAAAAA-
1 ATATATTTAATATTTAAAAAT
* *
19025808 ATAAATTTTAA-ATTTTAAAAT
1 ATATA-TTTAATATTTAAAAAT
* *
19025829 ATACATTTAAAATATTATAAAACT
1 ATATATTT--AATATT-TAAAAAT
* * **
19025853 A-ATA-ATAA-ACTTGAAAGGT
1 ATATATTTAATA-TTTAAAAAT
*
19025872 CATATCTTTAAATATTT--AAAT
1 -ATATATTT-AATATTTAAAAAT
* *
19025893 AT-TTTTTATTA-TTAAAAAT
1 ATATATTTAATATTTAAAAAT
19025912 ATATATTTAATATTTAATAAAT
1 ATATATTTAATATTTAA-AAAT
*
19025934 A-ATATTTAA-ACTTTAAAAAA
1 ATATATTTAATA-TTTAAAAAT
19025954 ATA-ATTT
1 ATATATTT
19025961 CAAAAATATA
Statistics
Matches: 114, Mismatches: 20, Indels: 38
0.66 0.12 0.22
Matches are distributed among these distances:
17 2 0.02
18 3 0.03
19 15 0.13
20 38 0.33
21 31 0.27
22 9 0.08
23 9 0.08
24 7 0.06
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (21 bp):
ATATATTTAATATTTAAAAAT
Found at i:19025955 original size:22 final size:21
Alignment explanation
Indices: 19025906--19025958 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
19025896 TTTTATTATT
19025906 AAAAATATATATTTAATATTTA
1 AAAAATA-ATATTTAATATTTA
*
19025928 ATAAATAATATTTAA-ACTTTAA
1 AAAAATAATATTTAATA-TTT-A
19025950 AAAAATAAT
1 AAAAATAAT
19025959 TTCAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 11 0.41
22 15 0.56
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATAATATTTAATATTTA
Found at i:19026036 original size:58 final size:58
Alignment explanation
Indices: 19025963--19026121 Score: 220
Period size: 58 Copynumber: 2.8 Consensus size: 58
19025953 AATAATTTCA
* *
19025963 AAAATATAT-ATTTAAAA-TTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGAC
1 AAAATATATAATTTAAAATTTAA-AATTAATAATAAATAAAATAAATAAGGATAAAGAC
* *
19026020 AACATTTA-AATTTTAAAATTTAAAATTAATAATAAAT-AAATAAAATAAGGATAAAGAC
1 AAAATATATAA-TTTAAAATTTAAAATTAATAATAAATAAAAT-AAATAAGGATAAAGAC
19026078 AAAATATATAA-TTAAAATTTAAAATTAATAATAAATAAAATAAA
1 AAAATATATAATTTAAAATTTAAAATTAATAATAAATAAAATAAA
19026122 CAAATTTAAA
Statistics
Matches: 90, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
57 39 0.43
58 45 0.50
59 6 0.07
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (58 bp):
AAAATATATAATTTAAAATTTAAAATTAATAATAAATAAAATAAATAAGGATAAAGAC
Found at i:19026191 original size:24 final size:24
Alignment explanation
Indices: 19026164--19026216 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
19026154 AAAATTAAGA
* *
19026164 AAAAGTTAAAAGTTA-AAAAACAAT
1 AAAAGTTAAAA-TAAGAAAAAAAAT
*
19026188 AAAACTTAAAATAAGAAAAAAAAT
1 AAAAGTTAAAATAAGAAAAAAAAT
19026212 AAAAG
1 AAAAG
19026217 AAAAAGACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.17
Consensus pattern (24 bp):
AAAAGTTAAAATAAGAAAAAAAAT
Found at i:19026416 original size:22 final size:20
Alignment explanation
Indices: 19026378--19026421 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
19026368 TCTTATATTA
*
19026378 TTAAAAAATTATATTTAACAT
1 TTAAAAAATAATATTTAA-AT
19026399 TTAAAAAATAATATTTTAAAT
1 TTAAAAAATAATA-TTTAAAT
19026420 TT
1 TT
19026422 TAAATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAAAATAATATTTAAAT
Found at i:19026417 original size:53 final size:51
Alignment explanation
Indices: 19026356--19026458 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 51
19026346 CATATCTTTA
* * *
19026356 AATATTTAAATGTCTTATATTATTAAAAAAT-TATATTTAACATTTAAAAAAT
1 AATATTTAAAT-T-TTAAATTATTAAAAAATATATATTTAAAACTTAAAAAAT
* **
19026408 AATATTTTAAATTTTAAATTTTTTTAAAATATATATTTAAAACTTAAAAAA
1 AATA-TTTAAATTTTAAATTATTAAAAAATATATATTTAAAACTTAAAAAA
19026459 AAGATTAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
51 13 0.30
52 23 0.53
53 7 0.16
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (51 bp):
AATATTTAAATTTTAAATTATTAAAAAATATATATTTAAAACTTAAAAAAT
Found at i:19026568 original size:7 final size:7
Alignment explanation
Indices: 19026558--19026582 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
19026548 CTTTATAAAA
19026558 TAAATTT
1 TAAATTT
19026565 TAAATTT
1 TAAATTT
19026572 TAAATTT
1 TAAATTT
19026579 TAAA
1 TAAA
19026583 ATATACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:19026704 original size:21 final size:20
Alignment explanation
Indices: 19026660--19026712 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
19026650 TTTTTTATTA
19026660 TTAAAAATATATATTTAATAT
1 TTAAAAATA-ATATTTAATAT
19026681 TTAATAAATAATATTTAA-ACT
1 TTAA-AAATAATATTTAATA-T
19026702 TTAAAAA-AATA
1 TTAAAAATAATA
19026713 ATTTCAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.13
20 4 0.13
21 17 0.57
22 5 0.17
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAAAAATAATATTTAATAT
Found at i:19026711 original size:22 final size:21
Alignment explanation
Indices: 19026662--19026714 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
19026652 TTTTATTATT
19026662 AAAAATATATATTTAATATTTA
1 AAAAATA-ATATTTAATATTTA
*
19026684 ATAAATAATATTTAA-ACTTTAA
1 AAAAATAATATTTAATA-TTT-A
19026706 AAAAATAAT
1 AAAAATAAT
19026715 TTCAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 11 0.41
22 15 0.56
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATAATATTTAATATTTA
Found at i:19026801 original size:65 final size:65
Alignment explanation
Indices: 19026726--19026884 Score: 225
Period size: 65 Copynumber: 2.4 Consensus size: 65
19026716 TCAAATATAT
* * *
19026726 ATTTAAAATTAAGAATAAAAAATAAATAAAAT-AAATAAGGATAAAGACAACATTTCA-ATTTTA
1 ATTTAAAATTAATAATAAAAAATAAATAAAATAAAATAAGGATAAAGACAAAATAT-ATA-TTTA
19026789 AA
64 AA
*
19026791 ATTTAAAATTAATAATAAATAATAAAT-AAATAAAATAAGGATAAAGACAAAATATATATTTAAA
1 ATTTAAAATTAATAATAAAAAATAAATAAAATAAAATAAGGATAAAGACAAAATATATATTTAAA
19026855 ATTTAAAATTAATAATAAATAAAATAAATA
1 ATTTAAAATTAATAAT-AA-AAAATAAATA
19026885 TATTTAAAAT
Statistics
Matches: 84, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
64 27 0.32
65 49 0.58
66 8 0.10
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (65 bp):
ATTTAAAATTAATAATAAAAAATAAATAAAATAAAATAAGGATAAAGACAAAATATATATTTAAA
Found at i:19026880 original size:282 final size:279
Alignment explanation
Indices: 19026309--19026880 Score: 596
Period size: 282 Copynumber: 2.0 Consensus size: 279
19026299 TTTATTTATT
*
19026309 ATAAAATATTATAAAATTAATAATAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTAT
1 ATAAAATATTATAAAACTAATAATAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTAT
* * **
19026374 ATTATTAAAAAATTATATTTAACATTTAAAAAATAATATTTTAAATTTTAAATTTTTTTAAAATA
66 ATTATTAAAAAATTATATTTAACATTTAAAAAATAATATTTTAAATTTAAAAATAATTTAAAATA
* * * *
19026439 TATATTTAAAACTTAAAAAAAAGATTAAAAAATATATTATACAATATTTCAAATACACATTTCAA
131 TATATTTAAAACTTAAAAAAAAGAATAAAAAATATATAATACAAGA-TTCAAAGACACATTTCAA
** * * **** *
19026504 GTTTTTTTAAAAGTAATAATAAGAATAAATAAAATTTATTTAATCTTTATAAAATAAATTTTAAA
195 GTTTTTTTAAAAGTAATAATAAGAATAAATAAAATAAAATAAATAAAGACAAAATAAATTTTAAA
* *
19026569 TTTTAAATTTTAAAATATAC
260 ATTTAAATATTAAAATATAC
* *
19026589 ATTTAAAATATTATAAAACTAATAATAAATTTGAAAGGTCATATCTTTAAATATTTAAATGTTTT
1 A--TAAAATATTATAAAACTAATAATAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTT
* * *
19026654 TTATTATT-AAAAATATATATTTAATATTTAATAAATAATA-TTTAAACTTTAAAAAAATAATTT
64 ATATTATTAAAAAAT-TATATTTAACATTTAAAAAATAATATTTTAAA-TTT--AAAAATAATTT
* *
19026717 CAAATATATATTTAAAA-TTAAGAATAAAA-AATAAATAAA-ATA-AATA-AGGA-T-AAAGACA
125 AAAATATATATTTAAAACTTAA-AA-AAAAGAATAAA-AAATATATAATACAAGATTCAAAGAC-
* *
19026775 ACATTTCAA-TTTTAAAATTTAAAATTAATAATAAATAATAAAT-AAATAAAATAAGGATAAAGA
186 ACATTTCAAGTTTT----TTTAAAAGTAATAAT-AAGAATAAATAAAATAAAATAA--ATAAAGA
*
19026838 CAAAATATATATTTAAAATTTAAA-ATTAATAATA-A-
244 CAAAATAAAT-TTTAAAATTTAAATATTAA-AATATAC
19026873 ATAAAATA
1 ATAAAATA
19026881 AATATATTTA
Statistics
Matches: 243, Mismatches: 30, Indels: 36
0.79 0.10 0.12
Matches are distributed among these distances:
279 9 0.04
280 11 0.05
281 12 0.05
282 101 0.42
283 28 0.12
284 43 0.18
285 23 0.09
286 16 0.07
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (279 bp):
ATAAAATATTATAAAACTAATAATAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTAT
ATTATTAAAAAATTATATTTAACATTTAAAAAATAATATTTTAAATTTAAAAATAATTTAAAATA
TATATTTAAAACTTAAAAAAAAGAATAAAAAATATATAATACAAGATTCAAAGACACATTTCAAG
TTTTTTTAAAAGTAATAATAAGAATAAATAAAATAAAATAAATAAAGACAAAATAAATTTTAAAA
TTTAAATATTAAAATATAC
Found at i:19026954 original size:756 final size:742
Alignment explanation
Indices: 19025522--19026982 Score: 2522
Period size: 756 Copynumber: 1.9 Consensus size: 742
19025512 AAATTTTAAA
19025522 TATATATTTTGTCTTTATCCTTATTTATTTTATTTATTTATTATAAAATATTATAAAATTAATAA
1 TATATATTTTGTCTTTATCCTTATTTATTTTATTTATTTATTATAAAATATTATAAAATTAATAA
*
19025587 TAAATTTGAAAGGTCATATCTTTAAATATTTAAATGTCTTATATTATTAAAAATTATATTTAACA
66 TAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTATATTATTAAAAATTATATTTAACA
19025652 TTTAAAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATATATCTAAAACTTCAAAAAAAAT
131 TTTAAAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATATATCTAAAACTTCAAAAAAAAT
* *
19025717 GATTAAAAATATATTATACAATATTTCAAATACACATTTCTAGTTTTTTAAAATTAATAATAATA
196 GATTAAAAATATATTATACAATATTTCAAATACACATTTCAAGTTTTTTAAAATTAATAAGAATA
19025782 AATAAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAAATATACATTTAAAATATTAT
261 AATAAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAAATATACATTTAAAATATTAT
19025847 AAAACTAATAATAAACTTGAAAGGTCATATCTTTAAATATTTAAATATTTTTTATTATTAAAAAT
326 AAAACTAATAATAAACTTGAAAGGTCATATCTTTAAATATTTAAATATTTTTTATTATTAAAAAT
19025912 ATATATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTCAAAAATATATATTTA
391 ATATATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTC-AAAATATATATTTA
19025977 AAATTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTAAATTTTAAAATTTA
455 AAATTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTAAATTTTAAAATTTA
19026042 AAATTAATAATAAATAAATAAAATAAGGATAAAGACAAAATATATAATTAAAATTTAAAATTAAT
520 AAATTAATAATAAATAAATAAAATAAGGATAAAGACAAAATATATAATTAAAATTTAAAATTAAT
*
19026107 AATAAATAAAATAAACAAATTTAAAATATACATTTAATGTTTTTTTTAAAATTAAGAAAAAGTTA
585 AATAAATAAAATAAACAAATTTAAAATATACATTTAAAG-TTTTTTTAAAATTAAGAAAAAGTTA
19026172 AAAGTTAAAAAACAATAAAACTTAAAATAAGAAAAAAAATAAAAGAAAAAGACAACTTAAAAAAA
649 AAAGTT-AAAAACAATAAAACTTAAAATAAGAAAAAAAATAAAAGAAAAAGACAACTTAAAAAAA
19026237 AAGTAAAAAGGAAAAAATCAACAGACAAAC
713 AAGTAAAAAGGAAAAAATCAACAGACAAAC
19026267 TATATATTTTGTCTTTATCCTTATTT-TATTTATTTATTTATTATAAAATATTATAAAATTAATA
1 TATATATTTTGTCTTTATCCTTATTTAT-TTTATTTATTTATTATAAAATATTATAAAATTAATA
19026331 ATAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTATATTATTAAAAAATTATATTTAA
65 ATAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTATATTATT-AAAAATTATATTTAA
* *
19026396 CATTTAAAAAATAATATTTTAAATTTTAAATTTTTTTAAAATATATATTTAAAACTT-AAAAAAA
129 CATTTAAAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATATATCTAAAACTTCAAAAAAA
19026460 A-GATTAAAAAATATATTATACAATATTTCAAATACACATTTCAAGTTTTTTTAAAAGTAATAAT
194 ATGATT-AAAAATATATTATACAATATTTCAAATACACATTTCAAG-TTTTTTAAAA-T--TAAT
* *
19026524 AAGAATAAATAAAATTTATTTAATCTTTATAAAATAAATTTTAAATTTTAAATTTTAAAATATAC
254 AAGAATAAATAAAATATATTTAAT-ATT-T-AAA-AAA---TAAATTTTAAATTTTAAAATATAC
* *
19026589 ATTTAAAATATTATAAAACTAATAATAAATTTGAAAGGTCATATCTTTAAATATTTAAATGTTTT
312 ATTTAAAATATTATAAAACTAATAATAAACTTGAAAGGTCATATCTTTAAATATTTAAATATTTT
19026654 TTATTATTAAAAATATATATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTC-
377 TTATTATTAAAAATATATATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTCA
*
19026718 AAATATATATTTAAAATTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTCA
442 AAATATATATTTAAAATTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTAA
19026783 ATTTTAAAATTTAAAATTAATAATAAATAATAAATAAATAAAATAAGGATAAAGACAAAATATAT
507 ATTTTAAAATTT--AA--AAT--T-AATAATAAATAAATAAAATAAGGATAAAGACAAAATATAT
* * *
19026848 ATTTAAAATTTAAAATTAATAATAAATAAAATAAATATATTTAAAATATACATTTAAAG-TTTTT
565 AATTAAAATTTAAAATTAATAATAAATAAAATAAACAAATTTAAAATATACATTTAAAGTTTTTT
*
19026912 TAAAATTAAGAAAAAGTTAAAAGTT-AAAA-AATAAAACTTAAAATAAGAAAAAGAATAAAAGAA
630 TAAAATTAAGAAAAAGTTAAAAGTTAAAAACAATAAAACTTAAAATAAGAAAAAAAATAAAAGAA
19026975 AAAGACAA
695 AAAGACAA
19026983 AGGTCAGCGC
Statistics
Matches: 680, Mismatches: 15, Indels: 31
0.94 0.02 0.04
Matches are distributed among these distances:
744 5 0.01
745 156 0.23
746 80 0.12
747 1 0.00
749 26 0.04
750 2 0.00
751 1 0.00
752 3 0.00
753 3 0.00
754 76 0.11
756 194 0.29
757 4 0.01
758 3 0.00
759 30 0.04
760 1 0.00
761 95 0.14
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (742 bp):
TATATATTTTGTCTTTATCCTTATTTATTTTATTTATTTATTATAAAATATTATAAAATTAATAA
TAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTATATTATTAAAAATTATATTTAACA
TTTAAAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATATATCTAAAACTTCAAAAAAAAT
GATTAAAAATATATTATACAATATTTCAAATACACATTTCAAGTTTTTTAAAATTAATAAGAATA
AATAAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAAATATACATTTAAAATATTAT
AAAACTAATAATAAACTTGAAAGGTCATATCTTTAAATATTTAAATATTTTTTATTATTAAAAAT
ATATATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTCAAAATATATATTTAA
AATTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTAAATTTTAAAATTTAA
AATTAATAATAAATAAATAAAATAAGGATAAAGACAAAATATATAATTAAAATTTAAAATTAATA
ATAAATAAAATAAACAAATTTAAAATATACATTTAAAGTTTTTTTAAAATTAAGAAAAAGTTAAA
AGTTAAAAACAATAAAACTTAAAATAAGAAAAAAAATAAAAGAAAAAGACAACTTAAAAAAAAAG
TAAAAAGGAAAAAATCAACAGACAAAC
Found at i:19028355 original size:20 final size:20
Alignment explanation
Indices: 19028330--19028369 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
19028320 ACTATGTATG
*
19028330 TTAATTAAATTATGTTTAAT
1 TTAATTAAACTATGTTTAAT
19028350 TTAATTAAACTATGTTTAAT
1 TTAATTAAACTATGTTTAAT
19028370 CAAGTTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.53
Consensus pattern (20 bp):
TTAATTAAACTATGTTTAAT
Found at i:19034927 original size:28 final size:28
Alignment explanation
Indices: 19034895--19034951 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
19034885 TCATGGGTTG
*
19034895 CGCATGGGAGCCCGCAACCATGACACAT
1 CGCATGGGAGCCCACAACCATGACACAT
19034923 CGCATGGGAGCCCACAACCATGACACAT
1 CGCATGGGAGCCCACAACCATGACACAT
19034951 C
1 C
19034952 TGTGTGAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.37, G:0.23, T:0.11
Consensus pattern (28 bp):
CGCATGGGAGCCCACAACCATGACACAT
Found at i:19040097 original size:28 final size:28
Alignment explanation
Indices: 19040066--19040122 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
19040056 TCATGGGTTG
19040066 CGCATGGGAGCCCGCAACCATGACACAT
1 CGCATGGGAGCCCGCAACCATGACACAT
19040094 CGCATGGGAGCCCGCAACCATGACACAT
1 CGCATGGGAGCCCGCAACCATGACACAT
19040122 C
1 C
19040123 TGTGTGAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.37, G:0.25, T:0.11
Consensus pattern (28 bp):
CGCATGGGAGCCCGCAACCATGACACAT
Found at i:19044768 original size:12 final size:12
Alignment explanation
Indices: 19044753--19044801 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
19044743 TATACCTTAT
* *
19044753 TATATATATCTA
1 TATATATGTATA
19044765 TATATATGTATA
1 TATATATGTATA
*
19044777 TGTATATGTATA
1 TATATATGTATA
*
19044789 TGTATATGTATA
1 TATATATGTATA
19044801 T
1 T
19044802 GATTATTTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (12 bp):
TATATATGTATA
Found at i:19044776 original size:6 final size:6
Alignment explanation
Indices: 19044767--19044802 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
19044757 TATATCTATA
19044767 TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG
19044803 ATTATTTGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:19044776 original size:18 final size:18
Alignment explanation
Indices: 19044755--19044801 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
19044745 TACCTTATTA
*
19044755 TATATATCTATATATATG
1 TATATATATATATATATG
* *
19044773 TATATGTATATGTATATG
1 TATATATATATATATATG
*
19044791 TATATGTATAT
1 TATATATATAT
19044802 GATTATTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (18 bp):
TATATATATATATATATG
Found at i:19046642 original size:34 final size:33
Alignment explanation
Indices: 19046564--19046642 Score: 88
Period size: 34 Copynumber: 2.4 Consensus size: 33
19046554 TTATACTATA
* * *
19046564 ATTATACTTACTTTTATGGTTATCATTATTCTT
1 ATTATACTTTCTTTTATCGTTATCATTATTATT
* *
19046597 ATTATTA-TTTCTTTATATCTTTGTCATTATTATT
1 ATTA-TACTTTCTTT-TATCGTTATCATTATTATT
19046631 ATTATACTTTCT
1 ATTATACTTTCT
19046643 CTTTTTTTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
33 12 0.32
34 26 0.68
ACGTcount: A:0.24, C:0.11, G:0.04, T:0.61
Consensus pattern (33 bp):
ATTATACTTTCTTTTATCGTTATCATTATTATT
Found at i:19048881 original size:30 final size:29
Alignment explanation
Indices: 19048845--19048906 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 29
19048835 ACCTAATAAG
19048845 CAAATGCCTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAAT-AAAAAATTAA
*
19048875 CAAATGCCTTTAAAATAATAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAATTAA
19048904 CAA
1 CAA
19048907 TAAAATAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.24
Consensus pattern (29 bp):
CAAATGCCTCTAAAATAATAAAAAATTAA
Found at i:19058862 original size:24 final size:24
Alignment explanation
Indices: 19058796--19058864 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 24
19058786 TATAGATTAT
* *
19058796 ATATTT-AAA-TTAAATTTTACAA
1 ATATTTAAAATTTATATTTTATAA
* * *
19058818 ATAATTAATATTAAT-TATTTATAA
1 ATATTTAAAATTTATAT-TTTATAA
19058842 ATATTTAAAATTTATATTTTATA
1 ATATTTAAAATTTATATTTTATA
19058865 TATGAAAATA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
22 5 0.14
23 3 0.09
24 26 0.74
25 1 0.03
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (24 bp):
ATATTTAAAATTTATATTTTATAA
Found at i:19065919 original size:23 final size:23
Alignment explanation
Indices: 19065889--19065934 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
19065879 CCTGAAATAG
* *
19065889 ATTTCCAAAATCAGTCTAATCTT
1 ATTTCCAAAATCAATATAATCTT
19065912 ATTTCCAAAATCAATATAATCTT
1 ATTTCCAAAATCAATATAATCTT
19065935 TACTAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (23 bp):
ATTTCCAAAATCAATATAATCTT
Found at i:19074650 original size:156 final size:156
Alignment explanation
Indices: 19074484--19074791 Score: 535
Period size: 156 Copynumber: 2.0 Consensus size: 156
19074474 ATAAGAATAT
*
19074484 TAATTATTAAGAATTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATGTTTA
1 TAATTATTAAGAATTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTTA
* *
19074549 AATATGATTAAATTATTTATTATTCATATTAATAATCTTATCAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAAT
19074614 AATAATTTACCAAAACAAATTTCTGG
131 AATAATTTACCAAAACAAATTTCTGG
* *
19074640 TAATTATTAAGAATTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAATTATGTTTA
1 TAATTATTAAGAATTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTTA
* *
19074705 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAAT
* *
19074770 AATCATTTACCAAAATAAATTT
131 AATAATTTACCAAAACAAATTT
19074792 ATGCTAAGGG
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
156 143 1.00
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (156 bp):
TAATTATTAAGAATTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTCTGG
Found at i:19074942 original size:16 final size:16
Alignment explanation
Indices: 19074921--19074988 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
19074911 GTTTTGCTAT
19074921 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
19074937 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
19074953 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
*
19074969 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
19074985 TACA
1 TACA
19074989 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:19086052 original size:25 final size:24
Alignment explanation
Indices: 19085987--19086076 Score: 65
Period size: 25 Copynumber: 3.6 Consensus size: 24
19085977 GCAGTAAATG
* * *
19085987 GGAAGCTCTTCCAAGCTGAATAACA
1 GGAAGCTCTTACGAGCT-AATATCA
*
19086012 GGAAGCTCATGA-GAGCTAAGTATCA
1 GGAAGCTC-TTACGAGCTAA-TATCA
* *
19086037 GGAAGCTCTTACGAGCTGATTATCG
1 GGAAGCTCTTACGAGCT-AATATCA
* *
19086062 GGAAACTCTTGCGAG
1 GGAAGCTCTTACGAG
19086077 TTGTGGTGTG
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
24 4 0.08
25 46 0.88
26 2 0.04
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (24 bp):
GGAAGCTCTTACGAGCTAATATCA
Found at i:19097646 original size:30 final size:30
Alignment explanation
Indices: 19097610--19097670 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
19097600 TCCTTAACTC
19097610 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
19097640 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
19097670 A
1 A
19097671 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:19099288 original size:13 final size:13
Alignment explanation
Indices: 19099284--19099308 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19099274 CAATTACCCA
19099284 ACCCAACCCAATT
1 ACCCAACCCAATT
19099297 ACCCAACCCAAT
1 ACCCAACCCAAT
19099309 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:19099293 original size:18 final size:18
Alignment explanation
Indices: 19099270--19099307 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
19099260 ATTGGATATT
19099270 AACCCAATTACCCAACCC
1 AACCCAATTACCCAACCC
19099288 AACCCAATTACCCAACCC
1 AACCCAATTACCCAACCC
19099306 AA
1 AA
19099308 TCATAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.47, G:0.00, T:0.11
Consensus pattern (18 bp):
AACCCAATTACCCAACCC
Found at i:19099352 original size:21 final size:20
Alignment explanation
Indices: 19099328--19099367 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
19099318 TACAAATAAT
19099328 TTAATAAATAAAAATAAAAAC
1 TTAAT-AATAAAAATAAAAAC
*
19099349 TTAATACTAAAAATAAAAA
1 TTAATAATAAAAATAAAAA
19099368 TAAAAAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (20 bp):
TTAATAATAAAAATAAAAAC
Found at i:19099411 original size:9 final size:9
Alignment explanation
Indices: 19099393--19099451 Score: 75
Period size: 9 Copynumber: 6.6 Consensus size: 9
19099383 TTTATAAAAA
*
19099393 TAATTTGGT
1 TAATTCGGT
19099402 TAATTCGGT
1 TAATTCGGT
19099411 TAATTCGGT
1 TAATTCGGT
* *
19099420 TAATTTGGG
1 TAATTCGGT
19099429 TAATTCAGG-
1 TAATTC-GGT
19099438 TAATTCGGT
1 TAATTCGGT
19099447 TAATT
1 TAATT
19099452 TTATACTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
8 2 0.05
9 40 0.91
10 2 0.05
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:19099432 original size:27 final size:27
Alignment explanation
Indices: 19099393--19099452 Score: 95
Period size: 27 Copynumber: 2.2 Consensus size: 27
19099383 TTTATAAAAA
*
19099393 TAATTTGGTTAATTC-GGTTAATTCGGT
1 TAATTTGGGTAATTCAGG-TAATTCGGT
19099420 TAATTTGGGTAATTCAGGTAATTCGGT
1 TAATTTGGGTAATTCAGGTAATTCGGT
19099447 TAATTT
1 TAATTT
19099453 TATACTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 29 0.94
28 2 0.06
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.47
Consensus pattern (27 bp):
TAATTTGGGTAATTCAGGTAATTCGGT
Found at i:19100693 original size:21 final size:21
Alignment explanation
Indices: 19100668--19100717 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
19100658 ATTCTTGAAA
19100668 TTAAAAGTATAAGACTAAATT
1 TTAAAAGTATAAGACTAAATT
*
19100689 TTAAAAATATAAGACTAAATT
1 TTAAAAGTATAAGACTAAATT
19100710 TTAAAAGT
1 TTAAAAGT
19100718 TCAAAGAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.34
Consensus pattern (21 bp):
TTAAAAGTATAAGACTAAATT
Found at i:19107966 original size:40 final size:40
Alignment explanation
Indices: 19107915--19108082 Score: 198
Period size: 41 Copynumber: 4.1 Consensus size: 40
19107905 GCAAAAATTG
* *
19107915 TAAAACACAGAGCAATAGCGGCGTTTTAC-CAAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTT-CGGAAAAACGCCGC
* *
19107956 TAAAAACAGAGCAATAGCGGCGTTTTAAC-AAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTT--CGGAAAAACGCCGC
*
19107997 TAAAAACAG-GTCAATAGCGGCGCTTTCGGTAAAACGCCGC
1 TAAAAACAGAG-CAATAGCGGCGCTTTCGGAAAAACGCCGC
* *
19108037 TAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTCGGAAAAACGCCGC
19108078 TAAAA
1 TAAAA
19108083 GTCATATAAC
Statistics
Matches: 117, Mismatches: 5, Indels: 10
0.89 0.04 0.08
Matches are distributed among these distances:
39 1 0.01
40 38 0.32
41 77 0.66
42 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.16
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTCGGAAAAACGCCGC
Found at i:19108097 original size:18 final size:18
Alignment explanation
Indices: 19108074--19108111 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
19108064 CGGTAAAACG
19108074 CCGCTAAAAGTCATATAA
1 CCGCTAAAAGTCATATAA
19108092 CCGCTAAAAGTCATATAA
1 CCGCTAAAAGTCATATAA
19108110 CC
1 CC
19108112 CCAAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21
Consensus pattern (18 bp):
CCGCTAAAAGTCATATAA
Found at i:19108125 original size:19 final size:18
Alignment explanation
Indices: 19108079--19108118 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
19108069 AAACGCCGCT
* *
19108079 AAAAGTCATATAACCGCT
1 AAAAGTCATATAACCCCA
19108097 AAAAGTCATATAACCCCA
1 AAAAGTCATATAACCCCA
19108115 AAAA
1 AAAA
19108119 AATCATAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.23, G:0.07, T:0.17
Consensus pattern (18 bp):
AAAAGTCATATAACCCCA
Found at i:19108363 original size:14 final size:15
Alignment explanation
Indices: 19108346--19108382 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
19108336 TAATATTTAA
19108346 GGTTTAAGG-TCTAT
1 GGTTTAAGGTTCTAT
*
19108360 GGTTTAGGGTTCTAT
1 GGTTTAAGGTTCTAT
19108375 GGTTTAAG
1 GGTTTAAG
19108383 TTTAATGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.43
Consensus pattern (15 bp):
GGTTTAAGGTTCTAT
Found at i:19113594 original size:85 final size:86
Alignment explanation
Indices: 19113487--19113670 Score: 253
Period size: 85 Copynumber: 2.2 Consensus size: 86
19113477 ATTTCATGAC
* * * * * *
19113487 CTTTAGCGGCGTTTGGGGAAAAAGTGCCGCTAAAGGTTATGATCTTTAGCGGCGTTTGC-GAAAA
1 CTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCAAAAAA
* *
19113551 AGCGCCGCTAAAGGTCGTGGT
66 AGCACCGCTAAAGGTCATGGT
* * *
19113572 CTTTAGCGGCGTTTGCGAAAAAAGCGTCGCTAAAGGTCATGGTCTTTAGCGGTATTTGCAAAAAA
1 CTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCAAAAAA
19113637 AGCACCGCTAAAGGTCATGGT
66 AGCACCGCTAAAGGTCATGGT
*
19113658 CTTTAGTGGCGTT
1 CTTTAGCGGCGTT
19113671 GCATATAGCG
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
85 51 0.59
86 35 0.41
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (86 bp):
CTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCAAAAAA
AGCACCGCTAAAGGTCATGGT
Found at i:19113608 original size:43 final size:43
Alignment explanation
Indices: 19113487--19113670 Score: 253
Period size: 43 Copynumber: 4.3 Consensus size: 43
19113477 ATTTCATGAC
* * * * *
19113487 CTTTAGCGGCGTTTGGGGAAAAAGTGCCGCTAAAGGTTATGAT
1 CTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGT
*
19113530 CTTTAGCGGCGTTTGCG-AAAAAGCGCCGCTAAAGGTCGTGGT
1 CTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGT
*
19113572 CTTTAGCGGCGTTTGCGAAAAAAGCGTCGCTAAAGGTCATGGT
1 CTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGT
** * *
19113615 CTTTAGCGGTATTTGCAAAAAAAGCACCGCTAAAGGTCATGGT
1 CTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGT
*
19113658 CTTTAGTGGCGTT
1 CTTTAGCGGCGTT
19113671 GCATATAGCG
Statistics
Matches: 125, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 38 0.30
43 87 0.70
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGT
Found at i:19116507 original size:27 final size:27
Alignment explanation
Indices: 19116458--19116613 Score: 142
Period size: 27 Copynumber: 5.8 Consensus size: 27
19116448 GCGAGGCTGC
* *
19116458 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
**
19116485 CAGATATTGTGGCAGAGTTACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
19116511 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
19116538 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
* * *
19116565 CAGATATATGTAGTAGAGCCATCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
19116592 CAGATAATTGTGGCATAGCCAC
1 CAGAT-ATTGTGGCAGAGCCAC
19116614 TAGGACGCTT
Statistics
Matches: 106, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
26 10 0.09
27 91 0.86
28 5 0.05
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:19116551 original size:54 final size:54
Alignment explanation
Indices: 19116476--19116613 Score: 188
Period size: 54 Copynumber: 2.6 Consensus size: 54
19116466 GTGACGAAGT
** *
19116476 CACCAGATACAGAT-ATTGTGGCAGAGTTACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTAGCAGAGC
* * *
19116530 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTAGTAGAGC
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTAGCAGAGC
* *
19116584 CATCAGATCAGATAATTGTGGCATAGCCAC
1 CACCAGATCAGATAATTGTGGCAGAGCCAC
19116614 TAGGACGCTT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
53 5 0.07
54 70 0.93
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTAGCAGAGC
Found at i:19121567 original size:29 final size:30
Alignment explanation
Indices: 19121508--19121565 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
19121498 TCCGAGCCTT
*
19121508 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
19121538 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
19121566 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:19121795 original size:13 final size:13
Alignment explanation
Indices: 19121777--19121808 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
19121767 TTTCCAGCAA
19121777 TTATGAATTTATT
1 TTATGAATTTATT
19121790 TTATGAATTTATT
1 TTATGAATTTATT
*
19121803 TGATGA
1 TTATGA
19121809 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:19122016 original size:50 final size:50
Alignment explanation
Indices: 19121903--19122144 Score: 288
Period size: 50 Copynumber: 4.7 Consensus size: 50
19121893 ATTTGGGTAA
* * * *
19121903 AGAGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
19121959 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
19122009 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
19122059 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
19122109 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
19122145 TTTGGCATGT
Statistics
Matches: 165, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:19122091 original size:100 final size:103
Alignment explanation
Indices: 19121903--19122152 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
19121893 ATTTGGGTAA
*
19121903 AGAGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
19121968 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
19122009 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
19122071 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
19122109 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
19122153 GTTATTATCA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.39
101 39 0.30
105 2 0.02
106 39 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:19127861 original size:48 final size:48
Alignment explanation
Indices: 19127806--19128132 Score: 320
Period size: 48 Copynumber: 6.8 Consensus size: 48
19127796 TGATATGTGT
* * **
19127806 GCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
19127854 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
* * *
19127902 GCTAGTGTAAGACCATGTTTGGAATATGACATCGGTAATGTTATGAGA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
* * * *
19127950 GCCAGTGTAAGACCATGTTTAGAATATGGCATCGGTAATGTTATGAGA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
* * * * * * ** *
19127998 GCCAGTGTAAGACGATGTCTGGGACATAGCAAT-GGCATTGAGATGAGG
1 GCTAGTGTAAGACCATGTTTGGAACATGGC-ATCGGCAATGTTATGAGA
* * * * * * **
19128046 GCTAGTGTAAGACAATGTCTGGGATATGGTATCGGC-CTCGACATGTA-A
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT-GTTATG-AGA
* *
19128094 GCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCAAT
1 GCTAGTGTAAGACCATGT-TTGGAACATGGCATCGGCAAT
19128133 TTACCCTCTT
Statistics
Matches: 237, Mismatches: 36, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
47 3 0.01
48 228 0.96
49 6 0.03
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
Found at i:19136396 original size:21 final size:21
Alignment explanation
Indices: 19136372--19136411 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
19136362 ACTATTTCTA
*
19136372 AAGTTAAAAGTCAAAACTATT
1 AAGTTAAAAGGCAAAACTATT
19136393 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
19136412 CGTCATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.10, G:0.12, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATT
Found at i:19140701 original size:18 final size:19
Alignment explanation
Indices: 19140680--19140717 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
19140670 AAGTTCAACA
19140680 ATTAAA-TTATTAA-AATAT
1 ATTAAAGTT-TTAATAATAT
19140698 ATTAAAGTTTTAATAATAT
1 ATTAAAGTTTTAATAATAT
19140717 A
1 A
19140718 AAAAATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTAAAGTTTTAATAATAT
Found at i:19144367 original size:16 final size:15
Alignment explanation
Indices: 19144341--19144375 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
19144331 TGATGTGAAT
19144341 AATATAAAATATTAA
1 AATATAAAATATTAA
*
19144356 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
19144372 AATA
1 AATA
19144376 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:19144558 original size:25 final size:25
Alignment explanation
Indices: 19144530--19144674 Score: 102
Period size: 25 Copynumber: 5.8 Consensus size: 25
19144520 TGATAATATT
*
19144530 AAAAATATGTACATAATATAGTGTA
1 AAAAATATATACATAATATAGTGTA
* *
19144555 AAAAATACATACATAATATAAT-T-
1 AAAAATATATACATAATATAGTGTA
* *
19144578 -AAAATATATACATAAGATAACATGTA
1 AAAAATATATACATAATAT-A-GTGTA
* * *
19144604 AAATATATATATAAATAATATAGTATT
1 AAA-A-ATATATACATAATATAGTGTA
* *
19144631 AAAGATATATACATAAAATA--GTA
1 AAAAATATATACATAATATAGTGTA
* * *
19144654 TAATATATATACGTAATATAG
1 AAAAATATATACATAATATAG
19144675 AATTTAGAAT
Statistics
Matches: 93, Mismatches: 19, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
22 16 0.17
23 18 0.19
24 3 0.03
25 34 0.37
27 7 0.08
28 2 0.02
29 13 0.14
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (25 bp):
AAAAATATATACATAATATAGTGTA
Found at i:19144621 original size:29 final size:29
Alignment explanation
Indices: 19144581--19144647 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
19144571 TATAATTAAA
*
19144581 ATATATACATAAGATAACATGTAAA-ATAT
1 ATATATAAATAAGATAACAT-TAAAGATAT
* **
19144610 ATATATAAATAATATAGTATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAGATAT
*
19144639 ATACATAAA
1 ATATATAAA
19144648 ATAGTATAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAGATAT
Found at i:19144638 original size:23 final size:23
Alignment explanation
Indices: 19144612--19144739 Score: 59
Period size: 23 Copynumber: 5.5 Consensus size: 23
19144602 TAAAATATAT
19144612 ATATAAATAATATAGTATTAAAG
1 ATATAAATAATATAGTATTAAAG
* *
19144635 ATATATACATAAAATAGTA-TAATAT
1 ATATA-A-ATAATATAGTATTAA-AG
** * *
19144660 ATATACGTAATATAGAATT-TAG
1 ATATAAATAATATAGTATTAAAG
** *
19144682 AATATACCTAATATA-T-TAAAAG
1 -ATATAAATAATATAGTATTAAAG
* *
19144704 AATATATATAATATAATATT-AAG
1 -ATATAAATAATATAGTATTAAAG
*
19144727 AAATATAATAATA
1 ATATA-AATAATA
19144740 ACAAAAAAAA
Statistics
Matches: 79, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
21 1 0.01
22 20 0.25
23 36 0.46
24 6 0.08
25 16 0.20
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (23 bp):
ATATAAATAATATAGTATTAAAG
Found at i:19145246 original size:18 final size:18
Alignment explanation
Indices: 19145223--19145276 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
19145213 ACAAGTGGTG
19145223 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
19145241 GT-G-G--AGT-TGG-T-
1 GTGGAGCAAGTGTGGCTA
19145252 GATGGAGCAAGTGTGGCTA
1 G-TGGAGCAAGTGTGGCTA
19145271 GTGGAG
1 GTGGAG
19145277 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 1 0.04
12 2 0.07
13 4 0.14
14 4 0.14
16 4 0.14
17 4 0.14
18 8 0.29
19 1 0.04
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.24
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:19145258 original size:30 final size:30
Alignment explanation
Indices: 19145218--19145282 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
19145208 TAGGTACAAG
*
19145218 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGATGGAGCAAGTGTGGCTAGTGGAGT
19145248 TGGTGATGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGATGGAGCAAGTGTGGCTAGTGGAGT
19145278 TGGTG
1 TGGTG
19145283 GTGGCAAAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.17, C:0.06, G:0.49, T:0.28
Consensus pattern (30 bp):
TGGTGATGGAGCAAGTGTGGCTAGTGGAGT
Found at i:19146225 original size:88 final size:88
Alignment explanation
Indices: 19145940--19146234 Score: 320
Period size: 88 Copynumber: 3.4 Consensus size: 88
19145930 GTGATCCTGA
* * *
19145940 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAC-TAGACATT-AAAAACCGA--AAT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTAAAACATA-A-ATTGAAAAAAC-ATTAAT
* * *
19146001 TGAAAATAGCTCAGCACGTGAGCCAAG
63 TGAAAATACCTCAG-ACGTGACCCGAG
* * * *
19146028 GCTCAATTCACTTCTCGCAATATGAGTTGATT-TTTAAAACA-AAATTTGTAAAACAGATT--TT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTAAAACATAAA-TTG-AAAAAACATTAATT
*
19146089 GAAAATACCTCAGTATGTGACCCGAG
64 GAAAATACCTCAG-ACGTGACCCGAG
* *
19146115 GCTCAACTCATTTCTCGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAAAACATTAATTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTAAAA-CATAAATTGAAAAAACATTAATTG
*
19146180 AAAATACCTCAG-CGTGCCCCGAG
65 AAAATACCTCAGACGTGACCCGAG
*
19146203 GCTCAACTCATTTCTCACAATATGAGTTGATT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATT
19146235 TTTTGATGAA
Statistics
Matches: 174, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
85 1 0.01
86 3 0.02
87 62 0.36
88 85 0.49
89 5 0.03
90 18 0.10
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (88 bp):
GCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTAAAACATAAATTGAAAAAACATTAATTGA
AAATACCTCAGACGTGACCCGAG
Found at i:19146365 original size:77 final size:77
Alignment explanation
Indices: 19146166--19146725 Score: 502
Period size: 77 Copynumber: 7.2 Consensus size: 77
19146156 CATAAATTGA
** * * ** *
19146166 AAAAACATTAATTGAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCATTTCTCACAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
19146229 TTGA-TTTTTTG
66 TTGATTTTTTTG
** * * ** * *
19146240 ATGAACAGAAATT-AAAACTACCTCA--ATGTGTCATGAGGCTCAACTCACCTCTTGCAACATGA
1 AAAAACAGAAATTGAAAAC-ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
19146302 GTTGATTTTTTTG
65 GTTGATTTTTTTG
* *
19146315 AAAAATAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
19146380 TTGATTTTTTTG
66 TTGATTTTTTTG
* * * * *
19146392 ACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTG-AAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
19146457 GTTGA-TTTTTTG
65 GTTGATTTTTTTG
* * *
19146469 AAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTC-A-ACTCAACTCACCTCTCGCAATATG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGA--CCCGAGGCTCAACTCACCTCTCGCAATATG
***
19146532 AGTTGATTTTTGAAAAAC
64 AGTTGATTTTT----TTG
* * * ** *
19146550 ATAAATTGAGCAGAAATTGAAAAAACCTCAACG-G-GTCTTGAGGCTCAACTCACCTCTTGCAAT
1 A-AAA---A-CAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAAT
19146613 ATGAGTTGATTTTTTTG
61 ATGAGTTGATTTTTTTG
* * * * *
19146630 ATAAAAATAGAATTTGAAAATATCTCAGCGTGT--CCTGAGGCTCAACTCACCTC-CGCAATATG
1 --AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
19146692 AGTTGA-TTTTTTG
64 AGTTGATTTTTTTG
19146705 AATTAAAACAGAAATTGAAAA
1 -A--AAAACAGAAATTGAAAA
19146726 TAGAAATAGA
Statistics
Matches: 398, Mismatches: 60, Indels: 54
0.78 0.12 0.11
Matches are distributed among these distances:
73 4 0.01
74 48 0.12
75 29 0.07
76 79 0.20
77 117 0.29
78 54 0.14
81 4 0.01
82 6 0.02
83 1 0.00
84 34 0.09
85 2 0.01
86 20 0.05
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29
Consensus pattern (77 bp):
AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTG
Found at i:19146617 original size:84 final size:81
Alignment explanation
Indices: 19146509--19146790 Score: 263
Period size: 77 Copynumber: 3.4 Consensus size: 81
19146499 TGAGGCTCAA
19146509 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATTGAAAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTGA--AGAAATTGAAAAA
*
19146574 ACCTCAACGGGTCTTGAGG
63 ACCTCAACGCGTCTTGAGG
* *** * * * *
19146593 CTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGATA-AAAA-T--AGAATTTGAAAATATC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTGAAGAAATTGAAAAAACC
* * *
19146654 TCAGCGTGTCCTGAGG
66 TCAACGCGTCTTGAGG
*
19146670 CTCAACTCACCTC-CGCAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAATAGAAATA
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-A--AAAACA-AAATTG---A-AGAAATT
*
19146734 GAAAACACCTC-A-GCGTCTTGAGG
57 GAAAAAACCTCAACGCGTCTTGAGG
* *
19146757 TTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
19146791 TTGAAACACG
Statistics
Matches: 159, Mismatches: 25, Indels: 25
0.76 0.12 0.12
Matches are distributed among these distances:
76 14 0.09
77 44 0.28
80 2 0.01
81 2 0.01
82 6 0.04
83 2 0.01
84 35 0.22
87 26 0.16
88 14 0.09
89 14 0.09
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (81 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTGAAGAAATTGAAAAAACC
TCAACGCGTCTTGAGG
Found at i:19146789 original size:164 final size:161
Alignment explanation
Indices: 19146241--19146796 Score: 501
Period size: 154 Copynumber: 3.5 Consensus size: 161
19146231 GATTTTTTGA
** * * * * *
19146241 TGAACAGAAATTA-AAACTACCTCAATGTGTCATGAGGCTCAACTCACCTCTTGCAACATGAGTT
1 TGAACAGAAA-TAGAAAAAACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
19146305 GATTTTTTTG-AAAAATAGAAGTTGAAAACACCTCAGC-GTGTGACC-CGAGGCTCAACTCACCT
65 GATTTTTTTGAAAAAACAGAAATTGAAAACACCTCAGCAGTGAG-CCTC-A-ACTCAACTCACCT
*
19146367 CTCGCAATATGAGTTGATTTTTTTGACAAACAGAAAT
127 CTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAAT
* *
19146404 TG-A-A-AAAT-------ACCTC-A-GCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGA
1 TGAACAGAAATAGAAAAAACCTCAACGCGTCT-TG---AGGCTCAACTCACCTCTCGCAATATGA
*
19146457 GTTGA-TTTTTTG-AAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCAACTCACC
62 GTTGATTTTTTTGAAAAAACAGAAATTGAAAACACCTCAGCA-GTGAGCCTCAACTCAACTCACC
*
19146520 TCTCGCAATATGAGTTGATTTTTGAAAAACATAAAT
126 TCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAT
* * * *
19146556 TGAGCAGAAATTGAAAAAACCTCAACGGGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
1 TGAACAGAAATAGAAAAAACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * * * *
19146621 ATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAGC-GTG-TCCTGAGGCTCAACTCACCTC-
66 ATTTTTTTGA-AAAAACAGAAATTGAAAACACCTCAGCAGTGAGCCTCA-ACTCAACTCACCTCT
19146683 CGCAATATGAGTTGATTTTTTGAATTAAAACAGAAAT
129 CGCAATATGAGTTGA-TTTTTG-A--AAAACAGAAAT
* * * *
19146720 TGAAAATAGAAATAGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TG--AACAGAAATAGAAAAAACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
19146783 TGATTTTTTTGAAA
64 TGATTTTTTTGAAA
19146797 CACGTAAATT
Statistics
Matches: 329, Mismatches: 35, Indels: 58
0.78 0.08 0.14
Matches are distributed among these distances:
151 3 0.01
152 20 0.06
153 5 0.02
154 62 0.19
155 36 0.11
156 5 0.02
159 1 0.00
160 52 0.16
161 30 0.09
162 7 0.02
163 29 0.09
164 61 0.19
165 1 0.00
166 17 0.05
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (161 bp):
TGAACAGAAATAGAAAAAACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTGAAAAAACAGAAATTGAAAACACCTCAGCAGTGAGCCTCAACTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAACAGAAAT
Found at i:19146819 original size:88 final size:86
Alignment explanation
Indices: 19146665--19146828 Score: 192
Period size: 88 Copynumber: 1.9 Consensus size: 86
19146655 CAGCGTGTCC
* * *
19146665 TGAGGCTCAACTCACCTCCGCAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAATAGA
1 TGAGGCTCAACTCACCTCCGCAATATGAGCTGATTTTTTGAA-TAAAACAGAAATTAAAAAAAGA
19146730 AA-TAGAAAACACCTCAGCGTCT
65 AATTA-AAAACACCTCAGCGTCT
* *
19146752 TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTT---TGAAACACGTAAATTAAAAAAA
1 TGAGGCTCAACTCACCTC-CGCAATATGAGCTGATTTTTTGAATAAAACA-G-AAATT--AAAAA
19146814 AAGAAATTAAAAACA
61 AAGAAATTAAAAACA
19146829 GAATTTGAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
84 6 0.09
85 1 0.02
86 5 0.08
87 17 0.26
88 35 0.53
89 2 0.03
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (86 bp):
TGAGGCTCAACTCACCTCCGCAATATGAGCTGATTTTTTGAATAAAACAGAAATTAAAAAAAGAA
ATTAAAAACACCTCAGCGTCT
Found at i:19146958 original size:75 final size:75
Alignment explanation
Indices: 19146855--19147204 Score: 350
Period size: 75 Copynumber: 4.5 Consensus size: 75
19146845 CGACGTGTGG
* * *
19146855 CCCGAGACTCAACTTACCTCTCGCAATATGAGTTGATTCTTTTGA-AAAGAAAAAATTGAAAATA
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAA-AAAAAATTGAAAATA
19146919 CCTCAGCGTGT
65 CCTCAGCGTGT
* * * *
19146930 CCCGAGGCTCAATTCACCTTTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAAT
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAAAA-A-AAATTGAAAAT
*
19146995 ATCTCAGCGTGT
64 ACCTCAGCGTGT
** * *
19147007 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTAC
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAAAAAAAATTGAAAATAC
19147070 CTCAGC--GT
66 CTCAGCGTGT
** * * *
19147078 CTTGAGGCTCAACTCACTTCTCGCAAAATGAGTTGATTTTTTTAAACATAAATTAAAAAAAACAA
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAC-----------AAAA-AA
19147143 AAATTGAAAATACCTCAGCGTGT
53 AAATTGAAAATACCTCAGCGTGT
* *
19147166 CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
19147205 GAAAAGCAGA
Statistics
Matches: 230, Mismatches: 25, Indels: 27
0.82 0.09 0.10
Matches are distributed among these distances:
71 36 0.16
73 21 0.09
74 3 0.01
75 53 0.23
76 4 0.02
77 53 0.23
85 3 0.01
86 20 0.09
88 37 0.16
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (75 bp):
CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAAAAAAAATTGAAAATAC
CTCAGCGTGT
Found at i:19147016 original size:77 final size:74
Alignment explanation
Indices: 19146862--19147136 Score: 330
Period size: 77 Copynumber: 3.7 Consensus size: 74
19146852 TGGCCCGAGA
* * *
19146862 CTCAACTTACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGAAAAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CAAAAATTGAAAATACCTCAGCG
**
19146927 TGTCCCGAGG
65 TGTCTTGAGG
* * *
19146937 CTCAATTCACCTTTCGCAATATGAGTTGATTTTTTTGATAAA-AATAGAATTTGAAAATATCTCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAA-A-AA-TTGAAAATACCTCA
19147001 GCGTGTCTTGAGG
62 GCGTGTCTTGAGG
*
19147014 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAGC-
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAAAAATTGAAAATACCTCAGCG
19147076 -GTCTTGAGG
65 TGTCTTGAGG
* * * *
19147085 CTCAACTCACTTCTCGCAAAATGAGTTGATTTTTTT--AAACATAAATTAAAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAAAAATTGAAAA
19147137 AAACAAAAAT
Statistics
Matches: 176, Mismatches: 17, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
70 13 0.07
71 36 0.20
73 19 0.11
74 4 0.02
75 46 0.26
76 7 0.04
77 51 0.29
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (74 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAAAAATTGAAAATACCTCAGCGT
GTCTTGAGG
Found at i:19147342 original size:14 final size:13
Alignment explanation
Indices: 19147307--19147351 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
19147297 TTGATTTTTG
19147307 AAAAACAGAAATT
1 AAAAACAGAAATT
*
19147320 AAAAGCAGAAATT
1 AAAAACAGAAATT
19147333 GAAAAACAGAAATT
1 -AAAAACAGAAATT
19147347 AAAAA
1 AAAAA
19147352 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:19147364 original size:100 final size:101
Alignment explanation
Indices: 19147135--19147410 Score: 398
Period size: 100 Copynumber: 2.8 Consensus size: 101
19147125 ATAAATTAAA
* *
19147135 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCA-CAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT-AGCAATATGAGT
* * * *
19147199 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* *
19147234 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTATTGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
*
19147299 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * *
19147334 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTAGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
19147399 GATTTTTGAAAA
66 GATTTTTGAAAA
19147411 GCATAAATCA
Statistics
Matches: 159, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
99 62 0.39
100 82 0.52
101 15 0.09
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:19147521 original size:75 final size:74
Alignment explanation
Indices: 19147331--19147779 Score: 544
Period size: 75 Copynumber: 6.0 Consensus size: 74
19147321 AAAGCAGAAA
* ** * ** * *
19147331 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTAGCAATATGA
1 TTGAAAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19147396 GTTGA-TTT
66 GTTGATTTT
* * * * *
19147404 TTGAAA-AGCATAAATCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGA-CAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
19147468 AGTTGATTATT
65 AGTTGATT-TT
* * *
19147479 TTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19147544 GTTGATTTT
66 GTTGATTTT
* * *
19147553 TTGAAAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGA
1 TTGAAAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19147618 GTTGAATTTTT
66 GTTG-A-TTTT
* * * *
19147629 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGA
1 TTGAAAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19147694 GTTGA-TTT
66 GTTGATTTT
** * * ** *
19147702 TTGAAAGGTAGAAATTGAAAATACCTCAACATGTCAGTCAAAGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTAAAAATACCTCAACGTGTC--TTGAGGCTCAACTCACCTCTCGCAATAT
*
19147767 GAGCTGATTTT
64 GAGTTGATTTT
19147778 TT
1 TT
19147780 TGAACCGTAG
Statistics
Matches: 338, Mismatches: 29, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
72 1 0.00
73 95 0.28
74 66 0.20
75 98 0.29
76 78 0.23
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (74 bp):
TTGAAAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:19147727 original size:149 final size:148
Alignment explanation
Indices: 19147331--19147783 Score: 591
Period size: 149 Copynumber: 3.0 Consensus size: 148
19147321 AAAGCAGAAA
* * * * ** *
19147331 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTAGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGA
* * * * * *
19147396 GTTGATTTTTGAAAAGCATAAATCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 GTTGATTTTTGAAAGGCAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
*
19147461 CAATATGAGTTGATTATT
131 CAATATGAGTTGATTTTT
* *
19147479 TTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGA
* * *
19147544 GTTGATTTTTTGAAAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTT
66 GTTGA-TTTTTGAAAGGCAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
19147609 GCAGTATGAGTTGAATTTTT
130 GCAATATGAGTTG-ATTTTT
* * * *
19147629 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGA
* * * ** *
19147694 GTTGATTTTTGAAAGGTAGAAATTGAAAATACCTCAACATGTCAGTCAAAGCTCAACTCACCTCT
66 GTTGATTTTTGAAAGGCAGAAATTAAAAATACCTCAACGTGTC--TTGAGGCTCAACTCACCTCT
*
19147759 CGCAATATGAGCTGATTTTT
129 CGCAATATGAGTTGATTTTT
19147779 TTGAA
1 TTGAA
19147784 CCGTAGAAAT
Statistics
Matches: 265, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
148 61 0.23
149 96 0.36
150 81 0.31
151 27 0.10
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (148 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGA
GTTGATTTTTGAAAGGCAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTT
Found at i:19150991 original size:472 final size:472
Alignment explanation
Indices: 19150107--19151058 Score: 1850
Period size: 472 Copynumber: 2.0 Consensus size: 472
19150097 GTTTCTCTGT
19150107 TTGCTTTGAATATTGAAGCCAAAGTAGCCAGGGCATCAGCCAATTGGTTTTCTTCTCGTGGGAGG
1 TTGCTTTGAATATTGAAGCCAAAGTAGCCAGGGCATCAGCCAATTGGTTTTCTTCTCGTGGGAGG
19150172 TAATTAAAAGTTATTTCTTCGAATTCTTTAATTAATTCTGCCACTAGATCACTGTATTTAACCAG
66 TAATTAAAAGTTATTTCTTCGAATTCTTTAATTAATTCTGCCACTAGATCACTGTATTTAACCAG
**
19150237 TTTTGAATCTCTCACTTCCCAATCTCCACAGATTTGGTATATCACCAAGGCTGAGTCTCCGTATA
131 TTTCAAATCTCTCACTTCCCAATCTCCACAGATTTGGTATATCACCAAGGCTGAGTCTCCGTATA
19150302 CCTCTAAAGTTTTGATGTTTCGTCCAATTGCTGCACGAAGTCCCATGATACAAGCCTCATATTCT
196 CCTCTAAAGTTTTGATGTTTCGTCCAATTGCTGCACGAAGTCCCATGATACAAGCCTCATATTCT
*
19150367 GCTATGTTATTGGTACAGAAAAAGTTCAGCCTGGCAGTGAGTGGGTAATGGTTCTTTTCTGGCGA
261 GCTATGTTATTGGTACAGAAAAAGTTCAGCCTGGCAGTGAGTGGGTAATGGTTCCTTTCTGGCGA
19150432 TACTAAGACTGCTCCAATCCCATGCCCCAATGCGTTCGATGCACCATCAAAGCTCATCTTCCATG
326 TACTAAGACTGCTCCAATCCCATGCCCCAATGCGTTCGATGCACCATCAAAGCTCATCTTCCATG
19150497 ACTTCTTTTTTGATGACTCGTATTCTTTTTCTGCAATACATATCAAGTCTTCATCCGGGAAATCA
391 ACTTCTTTTTTGATGACTCGTATTCTTTTTCTGCAATACATATCAAGTCTTCATCCGGGAAATCA
19150562 AATCTCAAGGGCTCATA
456 AATCTCAAGGGCTCATA
19150579 TTGCTTTGAATATTGAAGCCAAAGTAGCCAGGGCATCAGCCAATTGGTTTTCTTCTCGTGGGAGG
1 TTGCTTTGAATATTGAAGCCAAAGTAGCCAGGGCATCAGCCAATTGGTTTTCTTCTCGTGGGAGG
19150644 TAATTAAAAGTTATTTCTTCGAATTCTTTAATTAATTCTGCCACTAGATCACTGTATTTAACCAG
66 TAATTAAAAGTTATTTCTTCGAATTCTTTAATTAATTCTGCCACTAGATCACTGTATTTAACCAG
*
19150709 TTTCAAATCTCTCACTTCCCAATCTCCACGGATTTGGTATATCACCAAGGCTGAGTCTCCGTATA
131 TTTCAAATCTCTCACTTCCCAATCTCCACAGATTTGGTATATCACCAAGGCTGAGTCTCCGTATA
19150774 CCTCTAAAGTTTTGATGTTTCGTCCAATTGCTGCACGAAGTCCCATGATACAAGCCTCATATTCT
196 CCTCTAAAGTTTTGATGTTTCGTCCAATTGCTGCACGAAGTCCCATGATACAAGCCTCATATTCT
19150839 GCTATGTTATTGGTACAGAAAAAGTTCAGCCTGGCAGTGAGTGGGTAATGGTTCCTTTCTGGCGA
261 GCTATGTTATTGGTACAGAAAAAGTTCAGCCTGGCAGTGAGTGGGTAATGGTTCCTTTCTGGCGA
19150904 TACTAAGACTGCTCCAATCCCATGCCCCAATGCGTTCGATGCACCATCAAAGCTCATCTTCCATG
326 TACTAAGACTGCTCCAATCCCATGCCCCAATGCGTTCGATGCACCATCAAAGCTCATCTTCCATG
*
19150969 ACTTCTTTTTTGATGACTCGTATTCTTTTTCTGCAATACATATCAAGTCTTTATCCGGGAAATCA
391 ACTTCTTTTTTGATGACTCGTATTCTTTTTCTGCAATACATATCAAGTCTTCATCCGGGAAATCA
19151034 AATCTCAAGGGCTCATA
456 AATCTCAAGGGCTCATA
*
19151051 TTCCTTTG
1 TTGCTTTG
19151059 TCGTTCGAGC
Statistics
Matches: 474, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
472 474 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (472 bp):
TTGCTTTGAATATTGAAGCCAAAGTAGCCAGGGCATCAGCCAATTGGTTTTCTTCTCGTGGGAGG
TAATTAAAAGTTATTTCTTCGAATTCTTTAATTAATTCTGCCACTAGATCACTGTATTTAACCAG
TTTCAAATCTCTCACTTCCCAATCTCCACAGATTTGGTATATCACCAAGGCTGAGTCTCCGTATA
CCTCTAAAGTTTTGATGTTTCGTCCAATTGCTGCACGAAGTCCCATGATACAAGCCTCATATTCT
GCTATGTTATTGGTACAGAAAAAGTTCAGCCTGGCAGTGAGTGGGTAATGGTTCCTTTCTGGCGA
TACTAAGACTGCTCCAATCCCATGCCCCAATGCGTTCGATGCACCATCAAAGCTCATCTTCCATG
ACTTCTTTTTTGATGACTCGTATTCTTTTTCTGCAATACATATCAAGTCTTCATCCGGGAAATCA
AATCTCAAGGGCTCATA
Found at i:19164165 original size:20 final size:20
Alignment explanation
Indices: 19164140--19164180 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
19164130 GTTTCATATA
19164140 TCTTGCAAAATATGTTTACT
1 TCTTGCAAAATATGTTTACT
19164160 TCTTGCAAAATATGTTTACT
1 TCTTGCAAAATATGTTTACT
19164180 T
1 T
19164181 TCTCTTCGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (20 bp):
TCTTGCAAAATATGTTTACT
Found at i:19168265 original size:11 final size:11
Alignment explanation
Indices: 19168249--19168282 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
19168239 AAAATATAGG
19168249 TACATTATTTA
1 TACATTATTTA
19168260 TACATTATTTA
1 TACATTATTTA
*
19168271 TATATTTATTTA
1 TACA-TTATTTA
19168283 AATATTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (11 bp):
TACATTATTTA
Found at i:19172800 original size:46 final size:46
Alignment explanation
Indices: 19172735--19173054 Score: 444
Period size: 46 Copynumber: 7.0 Consensus size: 46
19172725 TTATCTTTGA
* * * * * *
19172735 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
19172781 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* ** **
19172827 CACGTTGCCATGGTATCTTTCAACCATGGTCTTTTTCATTTCCCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
** *
19172873 CATGTTGCCATGGTATCTTTCAACCATGGTCTTTTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
19172919 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
19172965 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
19173011 CATGTTGCCATGATATCTTTCAACCATGGTCTTACAT-ATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCAT
19173055 TTCAAAAAAC
Statistics
Matches: 250, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 250 1.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:19173031 original size:25 final size:25
Alignment explanation
Indices: 19172957--19173032 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
19172947 GTCTTACACA
*
19172957 TTTCATATCATGTTGCCATGGTATC
1 TTTCATATCATGTTGCCATGATATC
* * * *
19172982 TTTCA-ACCATG--GTC-TTACA-C
1 TTTCATATCATGTTGCCATGATATC
19173002 ATTTCATATCATGTTGCCATGATATC
1 -TTTCATATCATGTTGCCATGATATC
19173028 TTTCA
1 TTTCA
19173033 ACCATGGTCT
Statistics
Matches: 36, Mismatches: 9, Indels: 12
0.63 0.16 0.21
Matches are distributed among these distances:
20 1 0.03
21 7 0.19
22 7 0.19
24 7 0.19
25 13 0.36
26 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.42
Consensus pattern (25 bp):
TTTCATATCATGTTGCCATGATATC
Found at i:19173052 original size:21 final size:21
Alignment explanation
Indices: 19172982--19173053 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
19172972 CCATGGTATC
*
19172982 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACATA
* * * * *
19173003 TTTCATATCATGTTGCCATGATATC
1 TTTCA-ACCATG--GTC-TTACATA
19173028 TTTCAACCATGGTCTTACATA
1 TTTCAACCATGGTCTTACATA
19173049 TTTCA
1 TTTCA
19173054 TTTCAAAAAA
Statistics
Matches: 36, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
21 14 0.39
22 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACATA
Found at i:19174477 original size:10 final size:11
Alignment explanation
Indices: 19174437--19174483 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
19174427 CCCTTATTTT
*
19174437 CTTTCTCTACA
1 CTTTCTCTTCA
19174448 CTATTTCTCTTCA
1 C--TTTCTCTTCA
19174461 CTTTCTCTT-A
1 CTTTCTCTTCA
*
19174471 TTTTCTCTTCA
1 CTTTCTCTTCA
19174482 CT
1 CT
19174484 AACATATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 9 0.30
11 11 0.37
13 10 0.33
ACGTcount: A:0.13, C:0.32, G:0.00, T:0.55
Consensus pattern (11 bp):
CTTTCTCTTCA
Found at i:19174892 original size:8 final size:8
Alignment explanation
Indices: 19174879--19174912 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
19174869 CTAAATAAAT
19174879 AATAATAA
1 AATAATAA
19174887 AATAAT-A
1 AATAATAA
19174894 AA-AATAA
1 AATAATAA
19174901 AATAATAA
1 AATAATAA
19174909 AATA
1 AATA
19174913 TCTCATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 3 0.12
7 6 0.25
8 15 0.62
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAATAA
Found at i:19174893 original size:14 final size:13
Alignment explanation
Indices: 19174871--19174912 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 13
19174861 CTTTTATACT
19174871 AAATAAATAATAATA
1 AAAT-AATAA-AATA
19174886 AAATAATAAAAATA
1 AAATAAT-AAAATA
19174900 AAATAATAAAATA
1 AAATAATAAAATA
19174913 TCTCATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.23
14 14 0.54
15 6 0.23
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAATAAAATA
Found at i:19174940 original size:20 final size:18
Alignment explanation
Indices: 19174911--19174950 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
19174901 AATAATAAAA
*
19174911 TATCTCATTAAAATAATATT
1 TATCTAATT-AAATAAT-TT
19174931 TATCTAATTAAATAATTT
1 TATCTAATTAAATAATTT
19174949 TA
1 TA
19174951 AAATATCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (18 bp):
TATCTAATTAAATAATTT
Found at i:19182648 original size:28 final size:28
Alignment explanation
Indices: 19182613--19182667 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
19182603 TACATAAAAT
19182613 CACTCACAAATGTTACTAATGTTACTCA
1 CACTCACAAATGTTACTAATGTTACTCA
19182641 CACTCACAAATGTTACTAATGTTACTC
1 CACTCACAAATGTTACTAATGTTACTC
19182668 GATTGTGCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (28 bp):
CACTCACAAATGTTACTAATGTTACTCA
Found at i:19186304 original size:6 final size:6
Alignment explanation
Indices: 19186268--19186300 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
19186258 TTCCATCATA
*
19186268 ACGATC ACGATC ACGATC ACGATC ACGGTC ACG
1 ACGATC ACGATC ACGATC ACGATC ACGATC ACG
19186301 GTCAGAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.30, C:0.33, G:0.21, T:0.15
Consensus pattern (6 bp):
ACGATC
Found at i:19186595 original size:6 final size:6
Alignment explanation
Indices: 19186584--19186609 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
19186574 AGCATCATAA
19186584 TCCCTG TCCCTG TCCCTG TCCCTG TC
1 TCCCTG TCCCTG TCCCTG TCCCTG TC
19186610 ACGGTCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.50, G:0.15, T:0.35
Consensus pattern (6 bp):
TCCCTG
Found at i:19209628 original size:25 final size:25
Alignment explanation
Indices: 19209594--19209645 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
19209584 AGATGAAAAC
19209594 TCCTATTTTTAGTAAACTATCCCCT
1 TCCTATTTTTAGTAAACTATCCCCT
19209619 TCCTATTTTTAGTAAACTATCCCCT
1 TCCTATTTTTAGTAAACTATCCCCT
19209644 TC
1 TC
19209646 TCCTCACCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.29, G:0.04, T:0.44
Consensus pattern (25 bp):
TCCTATTTTTAGTAAACTATCCCCT
Found at i:19225223 original size:6 final size:7
Alignment explanation
Indices: 19225206--19225238 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
19225196 TATACATAGT
19225206 TTTTTTA
1 TTTTTTA
19225213 TTTTTTA
1 TTTTTTA
19225220 TTTTTTA
1 TTTTTTA
19225227 -TTTTTA
1 TTTTTTA
19225233 TTTTTT
1 TTTTTT
19225239 TTAGAACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:19225230 original size:13 final size:14
Alignment explanation
Indices: 19225206--19225238 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
19225196 TATACATAGT
19225206 TTTTTTATTTTTTA
1 TTTTTTATTTTTTA
19225220 TTTTTTA-TTTTTA
1 TTTTTTATTTTTTA
19225233 TTTTTT
1 TTTTTT
19225239 TTAGAACAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTATTTTTTA
Found at i:19233353 original size:20 final size:22
Alignment explanation
Indices: 19233325--19233377 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
19233315 CGGCCAGTAG
* *
19233325 CACGAGCGTGTCCC-AGG-GCA
1 CACGGGCGTGTCCCTAGGACCA
*
19233345 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
19233367 CACGGGCGTGT
1 CACGGGCGTGT
19233378 GAGCCCTGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 13 0.46
21 2 0.07
22 13 0.46
ACGTcount: A:0.15, C:0.34, G:0.36, T:0.15
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:19235984 original size:30 final size:31
Alignment explanation
Indices: 19235944--19236015 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 31
19235934 AATGAATAAA
* *
19235944 AAAAACAAAGA-AAAGATTT-CTCAAATTCTC
1 AAAAATAAAGACAAAG-TTTGCTCAAAGTCTC
*
19235974 AAAAATAAAGAGCAAAGTTTGCTCAAAGTCTG
1 AAAAATAAAGA-CAAAGTTTGCTCAAAGTCTC
*
19236006 AAAAGTAAAG
1 AAAAATAAAG
19236016 GTTGAGCATG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
30 10 0.29
31 3 0.09
32 22 0.63
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.21
Consensus pattern (31 bp):
AAAAATAAAGACAAAGTTTGCTCAAAGTCTC
Found at i:19235999 original size:32 final size:32
Alignment explanation
Indices: 19235955--19236015 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
19235945 AAAACAAAGA
*
19235955 AAAGATTTCTCAAATTCTCAAAAATAAAGAGC
1 AAAGATTTCTCAAAGTCTCAAAAATAAAGAGC
* *
19235987 AAAG-TTTGCTCAAAGTCTGAAAAGTAAAG
1 AAAGATTT-CTCAAAGTCTCAAAAATAAAG
19236016 GTTGAGCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 3 0.12
32 22 0.88
ACGTcount: A:0.48, C:0.13, G:0.15, T:0.25
Consensus pattern (32 bp):
AAAGATTTCTCAAAGTCTCAAAAATAAAGAGC
Found at i:19241458 original size:40 final size:40
Alignment explanation
Indices: 19241414--19241599 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
19241404 GCTCCTCGTT
* *
19241414 CAAATGCCTTCGGGACATAGCCCGG-TTATAGGAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGGAACTCGCA
*
19241454 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGGAACTCGCA
* *
19241494 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGGAACTCGCA
* * *
19241534 CAAATGCCTTCGGGACTTAACCCGGATAT-GGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGG-AAC-TCGCA
*
19241575 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
19241600 CATCATTCAA
Statistics
Matches: 133, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGGAACTCGCA
Found at i:19241498 original size:80 final size:81
Alignment explanation
Indices: 19241414--19241599 Score: 270
Period size: 80 Copynumber: 2.3 Consensus size: 81
19241404 GCTCCTCGTT
*
19241414 CAAATGCCTTCGGGACATAGCCCGG-TTATAGGAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGGAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
19241478 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* * *
19241494 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGGAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
19241559 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
19241575 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19241600 CATCATTCAA
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 84 0.89
81 10 0.11
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGGAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:19262207 original size:16 final size:17
Alignment explanation
Indices: 19262186--19262217 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
19262176 ATAAAAAGTA
19262186 TTTTTGA-GCATGATTT
1 TTTTTGATGCATGATTT
19262202 TTTTTGATGCATGATT
1 TTTTTGATGCATGATT
19262218 ATGTGCGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (17 bp):
TTTTTGATGCATGATTT
Found at i:19272826 original size:43 final size:44
Alignment explanation
Indices: 19272759--19272879 Score: 115
Period size: 45 Copynumber: 2.8 Consensus size: 44
19272749 TTTTCTCAAA
* *
19272759 TCACCGGTATT-TCGCCTGTTAGGCTCGAGGCCC-GATA-TCAGT-
1 TCACCGGTATTATAGCCTGCTAGGCTCGAGGCCCGGATAGT-A-TC
*
19272801 TCACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGGATAGTATC
1 TCACCGGTATTATAGCCTGCTAGGCTC-GAGGCCCGGATAGTATC
* ** *
19272846 TCACCGGCATTATAGTTTGCTAAGCTCGAAGGCC
1 TCACCGGTATTATAGCCTGCTAGGCTCG-AGGCC
19272880 TGAATAATCA
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
42 11 0.17
43 13 0.20
44 7 0.11
45 33 0.51
46 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.26
Consensus pattern (44 bp):
TCACCGGTATTATAGCCTGCTAGGCTCGAGGCCCGGATAGTATC
Found at i:19273268 original size:43 final size:43
Alignment explanation
Indices: 19273215--19273412 Score: 342
Period size: 43 Copynumber: 4.6 Consensus size: 43
19273205 CCGGTATTAC
*
19273215 GCCTGTTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
19273258 GCCTGCTAGGCACGAATGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
19273301 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
19273344 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
19273387 GCCTGCTAGGCATGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
19273413 TAATACCAGC
Statistics
Matches: 148, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 148 1.00
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:19273477 original size:38 final size:38
Alignment explanation
Indices: 19273405--19273488 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 38
19273395 GGCATGAAGG
* * *
19273405 CCCGAATATAATACCAGCACTAGTACTGCGGGATTTAT
1 CCCGAATATAATACCAGCACAAGTACTGCAGGATTTAA
* *
19273443 CCCGGATATAATACCAGCACGAAG-CCTGCAGGATTTAA
1 CCCGAATATAATACCAGCAC-AAGTACTGCAGGATTTAA
19273481 CCCGAATA
1 CCCGAATA
19273489 CACATCAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
38 37 0.95
39 2 0.05
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACAAGTACTGCAGGATTTAA
Found at i:19277689 original size:31 final size:31
Alignment explanation
Indices: 19277651--19277712 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
19277641 TTTGAAACCG
19277651 TTAGTACTCGGCCCGAGAAGCACTTGTTTAT
1 TTAGTACTCGGCCCGAGAAGCACTTGTTTAT
*
19277682 TTAGTACTCGGCCCGAGAAGCTCTTGTTTAT
1 TTAGTACTCGGCCCGAGAAGCACTTGTTTAT
19277713 AGTCTAAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (31 bp):
TTAGTACTCGGCCCGAGAAGCACTTGTTTAT
Found at i:19294728 original size:23 final size:25
Alignment explanation
Indices: 19294702--19294748 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
19294692 TATCATTCAT
*
19294702 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
19294725 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
19294749 TATATTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:19295069 original size:46 final size:46
Alignment explanation
Indices: 19295009--19295225 Score: 283
Period size: 46 Copynumber: 4.7 Consensus size: 46
19294999 TTTGACGTGA
* * * * * *
19295009 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** * * *
19295055 TGCCATGGTATCTTTCAACCATGGTCTTTTTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
19295101 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
19295147 TGCCATGGTATCTTTCAGCCACGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
19295193 TGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA
19295226 CAGGTTGTCA
Statistics
Matches: 152, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 4 0.03
46 148 0.97
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:19295173 original size:92 final size:90
Alignment explanation
Indices: 19295009--19295358 Score: 427
Period size: 84 Copynumber: 4.0 Consensus size: 90
19294999 TTTGACGTGA
* * * * * *
19295009 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA--TTCTATCAGGTTGCCATGGTATCTTTCAAC
*** * * *
19295074 CATGGTCTTTTTCTTTTCATGTCACGT
64 CATGGTCTTACACATTTCATATCAGGT
*
19295101 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAT-TC-TATCAGGTTGCCATGGTATCTTTCAAC
*
19295166 CACGGTCTTACACATTTCATATCAGGT
64 CATGGTCTTACACATTTCATATCAGGT
*
19295193 TGCCATGGTATCTTTCAACCATGGTCTT--ACA--C-A-CAGGTTGTCATGGTATCTTTCAACCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTCTATCAGGTTGCCATGGTATCTTTCAACCA
19295252 TGGTCTTACACATTTCATATCAGGT
66 TGGTCTTACACATTTCATATCAGGT
* *
19295277 TGCCATGGTATCTTTCAACCATGGTCTT--AC--GC-A-CAGGTTGTCATGGTATCTTTCAACCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTCTATCAGGTTGCCATGGTATCTTTCAACCA
19295336 TGGTCTTACACATTTCATATCAG
66 TGGTCTTACACATTTCATATCAG
19295359 AGAGTACACT
Statistics
Matches: 238, Mismatches: 17, Indels: 14
0.88 0.06 0.05
Matches are distributed among these distances:
84 129 0.54
85 1 0.00
87 1 0.00
90 4 0.02
91 2 0.01
92 101 0.42
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (90 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTCTATCAGGTTGCCATGGTATCTTTCAACCA
TGGTCTTACACATTTCATATCAGGT
Found at i:19295239 original size:38 final size:38
Alignment explanation
Indices: 19295188--19295347 Score: 221
Period size: 38 Copynumber: 4.0 Consensus size: 38
19295178 CATTTCATAT
19295188 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
19295226 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A
*
19295271 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACGCA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
19295310 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
19295348 TTTCATATCA
Statistics
Matches: 109, Mismatches: 5, Indels: 16
0.84 0.04 0.12
Matches are distributed among these distances:
38 68 0.62
39 1 0.01
40 3 0.03
41 1 0.01
43 1 0.01
44 2 0.02
45 1 0.01
46 32 0.29
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:19295290 original size:130 final size:122
Alignment explanation
Indices: 19295099--19295347 Score: 372
Period size: 130 Copynumber: 2.0 Consensus size: 122
19295089 TTCATGTCAC
19295099 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCA
* *
19295164 GCCACGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
66 ACCACGGTCTT--AC---GC--A-CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
* *
19295229 GTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCA
* *
19295294 ACCATGGTCTTACGCACAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACA
66 ACCACGGTCTTACGCACAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
19295348 TTTCATATCA
Statistics
Matches: 113, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
122 37 0.33
123 1 0.01
125 1 0.01
128 2 0.02
130 72 0.64
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (122 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCA
ACCACGGTCTTACGCACAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
Found at i:19297543 original size:31 final size:32
Alignment explanation
Indices: 19297486--19297568 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 32
19297476 CTTTATATAC
*
19297486 TAATAAAATAATAAAATATCTTATTAAAGT-AT
1 TAATAAAATAATAAAATATCTAATTAAA-TAAT
**
19297518 TAATAAAATAAT-ATTTATCTAATTAAATAAT
1 TAATAAAATAATAAAATATCTAATTAAATAAT
19297549 T-ATAAAAT-ATCAAAATATCT
1 TAATAAAATAAT-AAAATATCT
19297569 CTAGCATCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
29 2 0.05
30 8 0.19
31 21 0.49
32 12 0.28
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (32 bp):
TAATAAAATAATAAAATATCTAATTAAATAAT
Found at i:19300846 original size:42 final size:43
Alignment explanation
Indices: 19300764--19300854 Score: 123
Period size: 42 Copynumber: 2.1 Consensus size: 43
19300754 CTTACATGGG
**
19300764 ATCTCATATCGATGCTAATAGCCCAGCTATGGTCTTACACG-A
1 ATCTCATATCGATGCTAATAGCCCAAATATGGTCTTACACGTA
* *
19300806 AGTCTCATATCGATGC-CATATCCCAAATATGGTCTTACACGTA
1 A-TCTCATATCGATGCTAATAGCCCAAATATGGTCTTACACGTA
19300849 ATCTCA
1 ATCTCA
19300855 AATAACCTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (43 bp):
ATCTCATATCGATGCTAATAGCCCAAATATGGTCTTACACGTA
Found at i:19302726 original size:21 final size:22
Alignment explanation
Indices: 19302683--19302728 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
19302673 TCATCAATTT
* *
19302683 AACATTCATAATACCAACTATC
1 AACAATCATAATACCAACCATC
*
19302705 AACAATCATTATA-CAACCATC
1 AACAATCATAATACCAACCATC
19302726 AAC
1 AAC
19302729 CAACTCAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (22 bp):
AACAATCATAATACCAACCATC
Found at i:19309375 original size:15 final size:15
Alignment explanation
Indices: 19309355--19309410 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
19309345 GGGAGCTTTT
*
19309355 TGATGGTGGTGGTGG
1 TGATGGTGATGGTGG
*
19309370 TGATGGTGATGGTGA
1 TGATGGTGATGGTGG
* * *
19309385 TGCTGATGATGGTGA
1 TGATGGTGATGGTGG
*
19309400 TGATGATGATG
1 TGATGGTGATG
19309411 AAGCTGGTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.18, C:0.02, G:0.46, T:0.34
Consensus pattern (15 bp):
TGATGGTGATGGTGG
Found at i:19311902 original size:11 final size:12
Alignment explanation
Indices: 19311868--19312010 Score: 58
Period size: 12 Copynumber: 12.1 Consensus size: 12
19311858 GTTTTATTTT
*
19311868 TATTTTTATATCA
1 TATTATTATAT-A
19311881 TA-TATTATATA
1 TATTATTATATA
*
19311892 -ATTATTTTATA
1 TATTATTATATA
*
19311903 TATTACTCATAT-
1 TATTA-TTATATA
19311915 TA-T-TTATATA
1 TATTATTATATA
19311925 TATTA-TATAT-
1 TATTATTATATA
19311935 TATT-TTCACATATA
1 TATTATT---ATATA
*
19311949 TACTT-TTTTAT-
1 TA-TTATTATATA
*
19311960 TATATATTATATT
1 TAT-TATTATATA
19311973 TATT-TTATAT-
1 TATTATTATATA
*
19311983 TATTATGTCATTTTA
1 TATTAT-T-A-TATA
19311998 TATTATTATATA
1 TATTATTATATA
19312010 T
1 T
19312011 TTTTATCTAT
Statistics
Matches: 101, Mismatches: 9, Indels: 41
0.67 0.06 0.27
Matches are distributed among these distances:
9 5 0.05
10 13 0.13
11 26 0.26
12 27 0.27
13 15 0.15
14 5 0.05
15 10 0.10
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (12 bp):
TATTATTATATA
Found at i:19311947 original size:22 final size:21
Alignment explanation
Indices: 19311879--19311988 Score: 76
Period size: 20 Copynumber: 5.5 Consensus size: 21
19311869 ATTTTTATAT
19311879 CATATATTATATAATTATTTT-
1 CATATATTATAT-ATTATTTTA
19311900 -ATATATTACTCATATTA-TTTA
1 CATATATTA-T-ATATTATTTTA
*
19311921 TATATATTATATATTATTTT-
1 CATATATTATATATTATTTTA
* *
19311941 CACATA-TATA-CTT-TTTTA
1 CATATATTATATATTATTTTA
*
19311959 TTATATATTATAT-TTATTTTA
1 -CATATATTATATATTATTTTA
*
19311980 TAT-TATTAT
1 CATATATTAT
19311989 GTCATTTTAT
Statistics
Matches: 74, Mismatches: 5, Indels: 22
0.73 0.05 0.22
Matches are distributed among these distances:
17 4 0.05
18 2 0.03
19 14 0.19
20 30 0.41
21 14 0.19
22 10 0.14
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
CATATATTATATATTATTTTA
Found at i:19311975 original size:13 final size:13
Alignment explanation
Indices: 19311868--19311988 Score: 58
Period size: 13 Copynumber: 9.1 Consensus size: 13
19311858 GTTTTATTTT
* *
19311868 TATTTTTATATCA
1 TATTTATATATTA
19311881 TATATTATATAATTA
1 TAT-TTATAT-ATTA
19311896 T-TTTATATATTA
1 TATTTATATATTA
*
19311908 CTCATATTATTTA-TA
1 -T-AT-TTATATATTA
19311923 TATATTATATATTA
1 TAT-TTATATATTA
*
19311937 T-TTTCACATA-TA
1 TATTT-ATATATTA
*
19311949 TACTTT-TTTATTA
1 TA-TTTATATATTA
19311962 TATATTATAT-TTA
1 TAT-TTATATATTA
19311975 T-TTTATATTATTA
1 TATTTATA-TATTA
19311988 T
1 T
19311989 GTCATTTTAT
Statistics
Matches: 85, Mismatches: 8, Indels: 30
0.69 0.07 0.24
Matches are distributed among these distances:
11 5 0.06
12 14 0.16
13 38 0.45
14 15 0.18
15 7 0.08
16 6 0.07
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTTATATATTA
Found at i:19312014 original size:18 final size:18
Alignment explanation
Indices: 19311896--19312016 Score: 72
Period size: 18 Copynumber: 6.3 Consensus size: 18
19311886 TATATAATTA
19311896 TTTTATA-TATTACTCATAT
1 TTTTATATTATTA-T-ATAT
19311915 TATTTATATATATTATATAT
1 T-TTTATAT-TATTATATAT
*
19311935 TATTT-TCA-CA-TATATACTT
1 T-TTTAT-ATTATTATATA--T
*
19311954 TTTTATTATATATTATATTT
1 TTTTA-TAT-TATTATATAT
*
19311974 ATTTTATATTATTATGTCA-
1 -TTTTATATTATTATAT-AT
19311993 TTTTATATTATTATATAT
1 TTTTATATTATTATATAT
19312011 TTTTAT
1 TTTTAT
19312017 CTATGGCGAT
Statistics
Matches: 82, Mismatches: 6, Indels: 29
0.70 0.05 0.25
Matches are distributed among these distances:
17 7 0.09
18 25 0.30
19 12 0.15
20 21 0.26
21 7 0.09
22 10 0.12
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (18 bp):
TTTTATATTATTATATAT
Found at i:19315064 original size:40 final size:40
Alignment explanation
Indices: 19314860--19315064 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
19314850 CGGAATTTAA
** *
19314860 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
19314900 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
19314940 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
19314980 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTGGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
19315020 CCGGATATGGTCACTTAGCACAAA-CCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
19315060 CCGGA
1 CCGGA
19315065 CATCATTCAA
Statistics
Matches: 144, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.03
40 129 0.90
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:19323064 original size:40 final size:40
Alignment explanation
Indices: 19322919--19323050 Score: 223
Period size: 40 Copynumber: 3.3 Consensus size: 40
19322909 GCTACTCGTT
* *
19322919 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
19322959 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
19322998 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
19323038 CAAATGCCTTCGG
1 CAAATGCCTTCGG
19323051 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
39 34 0.39
40 54 0.61
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:19330737 original size:79 final size:82
Alignment explanation
Indices: 19330617--19330801 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
19330607 GCTACTCGTT
* *
19330617 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
19330680 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
19330697 CAAATGCCTTCGGG-CTTAACCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
19330760 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
19330777 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19330802 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:19330801 original size:40 final size:40
Alignment explanation
Indices: 19330598--19330801 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
19330588 TCGAATTTAA
** *
19330598 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
19330638 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
19330678 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
19330717 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
19330757 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
19330797 CCGGA
1 CCGGA
19330802 CATCATTCAA
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 35 0.24
40 94 0.66
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:19344205 original size:47 final size:47
Alignment explanation
Indices: 19344147--19344455 Score: 423
Period size: 47 Copynumber: 6.5 Consensus size: 47
19344137 CAGCCAAGAC
*
19344147 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
19344194 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
19344241 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
19344288 AGTGTATATATGTGATAAGGCCTAATGGGCTATGATGTGATGAAT-TGCA
1 AGTGTATATATGTGATAAGGCCTAAT-GGC--CGATGTGATGAATGTGAA
*
19344337 AGTGTATATAAGTGATAGAGGCCTCAATGGCCG--GTGACTGAATGGTGAA
1 AGTGTATATATGTGATA-AGGCCT-AATGGCCGATGTGA-TGAAT-GTGAA
*
19344386 AGTGTATAGTA--TGATAAAGG-CTAATATGCCGATGTGATGCAATGTGAA
1 AGTGTATA-TATGTGAT-AAGGCCTAAT-GGCCGATGTGATG-AATGTGAA
*
19344434 AATGTATATATGTGATAAGGCC
1 AGTGTATATATGTGATAAGGCC
19344456 AAGAATAATA
Statistics
Matches: 237, Mismatches: 8, Indels: 32
0.86 0.03 0.12
Matches are distributed among these distances:
46 7 0.03
47 132 0.56
48 29 0.12
49 43 0.18
50 23 0.10
51 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:19345942 original size:43 final size:43
Alignment explanation
Indices: 19345881--19345983 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
19345871 TTAGTTTTCA
19345881 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
19345924 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
19345967 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
19345984 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:19346000 original size:29 final size:29
Alignment explanation
Indices: 19345965--19346038 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
19345955 GTTGTGAGAT
* *
19345965 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
19345994 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
19346023 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
19346039 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:19346406 original size:40 final size:40
Alignment explanation
Indices: 19346349--19346569 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
19346339 TTGAATGATG
* * * *
19346349 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATA
*
19346389 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* *
19346429 TTCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
19346469 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
** * *
19346509 TCCGTG-CTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCG-GACTAAGTTC-CGAAGAGCATTCGTGCTAGTGATATA
* *
19346549 TCCGGGCT-AGGTCCG-AGAGCA
1 TCCGGACTAAGTTCCGAAGAGCA
19346570 ATCATGCTGG
Statistics
Matches: 161, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
38 6 0.04
39 5 0.03
40 135 0.84
41 8 0.05
42 7 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:19346488 original size:80 final size:79
Alignment explanation
Indices: 19346386--19346594 Score: 244
Period size: 80 Copynumber: 2.6 Consensus size: 79
19346376 CTAAGTGACC
**
19346386 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATTCGGACT-AAGTTCCGAAGAG
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATTCGG-CTAAACCT-CGAAGAG
19346450 CATTCGTGCTAGTGAT
64 CATTCGTGCTAGTGAT
* * *
19346466 GTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCTCGAAGAGC
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATTCG-GCTAAACCTCGAAGAGC
* *
19346531 ATTCGTGCTGGTGTT
65 ATTCGTGCTAGTGAT
* * * * *
19346546 ATATCCGGGCT-AGGTCCG-AGAGCAATCATGCTGGTGACATGTATTCGGC
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG--ATGTATTCGGC
19346595 CTTCGTGCCT
Statistics
Matches: 110, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
78 15 0.14
79 8 0.07
80 83 0.75
81 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (79 bp):
ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATTCGGCTAAACCTCGAAGAGCA
TTCGTGCTAGTGAT
Done.