Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 6 of 344
Found at i:2163398 original size:18 final size:17
Alignment explanation
Indices: 2163367--2163411 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 17
2163357 TGATGTCATC
*
2163367 ATAAAAAATTTTAAAAA
1 ATAAAAAATATTAAAAA
2163384 ATAAAAAAGTATTAAAAA
1 ATAAAAAA-TATTAAAAA
2163402 ATTAAAAAAT
1 A-TAAAAAAT
2163412 TACAACAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 8 0.32
18 10 0.40
19 7 0.28
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (17 bp):
ATAAAAAATATTAAAAA
Found at i:2164130 original size:10 final size:10
Alignment explanation
Indices: 2164117--2164157 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
2164107 TTTCTAATCA
2164117 TTTTTAAA-T
1 TTTTTAAATT
2164126 TTTTTAAATAT
1 TTTTTAAAT-T
2164137 TTTTTATAATT
1 TTTTTA-AATT
2164148 TTTTTAAATT
1 TTTTTAAATT
2164158 CCAACATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 8 0.28
10 4 0.14
11 14 0.48
12 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:2170197 original size:50 final size:50
Alignment explanation
Indices: 2170119--2170295 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
2170109 CCATGGCAAC
*
2170119 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
*
2170169 AAATGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* *
2170219 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* **
2170269 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTAATAGCTTCGGCTAC
2170296 CTGATCAGTG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 95 0.81
51 23 0.19
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
Found at i:2170309 original size:31 final size:31
Alignment explanation
Indices: 2170271--2170450 Score: 288
Period size: 31 Copynumber: 5.8 Consensus size: 31
2170261 ACAAATGACA
2170271 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
2170302 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
2170333 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
2170364 AGTAAAAAATGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
2170395 AATGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
2170426 AATGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
2170451 AAGTGACAAG
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 141 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:2170538 original size:47 final size:46
Alignment explanation
Indices: 2170468--2170628 Score: 160
Period size: 47 Copynumber: 3.4 Consensus size: 46
2170458 AAGTGATTTC
* *
2170468 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
2170514 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * * * *
2170561 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTA
1 CGTATAAGACCATATCTGGGATATGGCATCG--GTGAGATATATGA-TA
* *
2170610 CGTGTAAGACCATAGCTGG
1 CGTATAAGACCATATCTGG
2170629 CTATGACATC
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
46 26 0.27
47 40 0.41
48 11 0.11
49 20 0.21
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:2170631 original size:48 final size:48
Alignment explanation
Indices: 2170519--2170643 Score: 166
Period size: 48 Copynumber: 2.6 Consensus size: 48
2170509 TGCTACTGTA
* * * *
2170519 TAAGACCATATCTGGGATATGACATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGACATCAATATGTGATATGTGATTCGTG
* *
2170565 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGACATCAATATGTGATATGTGATT-CGTG
2170614 TAAGACCATAGCT-GGCTATGACATCAATAT
1 TAAGACCATAGCTGGGCTATGACATCAATAT
2170644 ATGAAGATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 23 0.33
47 1 0.01
48 28 0.41
49 17 0.25
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGACATCAATATGTGATATGTGATTCGTG
Found at i:2189397 original size:18 final size:18
Alignment explanation
Indices: 2189374--2189412 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
2189364 CTGCTCCAGC
2189374 AAAGGACGCTAAAGATGG
1 AAAGGACGCTAAAGATGG
*
2189392 AAAGGATGCTAAAGATGG
1 AAAGGACGCTAAAGATGG
2189410 AAA
1 AAA
2189413 AGACTCGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.08, G:0.31, T:0.13
Consensus pattern (18 bp):
AAAGGACGCTAAAGATGG
Found at i:2199410 original size:31 final size:30
Alignment explanation
Indices: 2199352--2199419 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 30
2199342 TAAAAAATGA
2199352 TTATTAAATTATTGAAAAGTTTAATTTAA-
1 TTATTAAATTATTGAAAAGTTTAATTTAAG
*
2199381 TTCATTAAATTATTTG-AAAGTTTTTATTTAAG
1 TT-ATTAAATTA-TTGAAAAG-TTTAATTTAAG
2199413 TTATTAA
1 TTATTAA
2199420 GTTGTGTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
29 2 0.06
30 13 0.38
31 17 0.50
32 2 0.06
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.51
Consensus pattern (30 bp):
TTATTAAATTATTGAAAAGTTTAATTTAAG
Found at i:2201803 original size:11 final size:11
Alignment explanation
Indices: 2201787--2201816 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
2201777 TGTCTCATCT
2201787 TACAGTATCAC
1 TACAGTATCAC
*
2201798 TACAGTATTAC
1 TACAGTATCAC
2201809 TACAGTAT
1 TACAGTAT
2201817 ATAATTTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (11 bp):
TACAGTATCAC
Found at i:2209903 original size:13 final size:15
Alignment explanation
Indices: 2209870--2209906 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
2209860 AGTATTTTTT
*
2209870 TAATTTTAAAATATC
1 TAATTTTAAAATATA
2209885 TAATTTTAAAA-A-A
1 TAATTTTAAAATATA
2209898 TAATTTTAA
1 TAATTTTAA
2209907 CAATGTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 1 0.05
15 11 0.52
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
TAATTTTAAAATATA
Found at i:2215914 original size:30 final size:30
Alignment explanation
Indices: 2215872--2215935 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
2215862 AACTTATATC
*
2215872 TTTATAATTTTTAAAGGATTAAATTAAAAT
1 TTTATAATTTTTAAAGGATTAAAATAAAAT
** *
2215902 TTTATTAA-TTTTAGGGGGTTAAAATAAAAT
1 TTTA-TAATTTTTAAAGGATTAAAATAAAAT
2215932 TTTA
1 TTTA
2215936 ACTTTATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 26 0.90
31 3 0.10
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (30 bp):
TTTATAATTTTTAAAGGATTAAAATAAAAT
Found at i:2224279 original size:32 final size:32
Alignment explanation
Indices: 2224243--2224310 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
2224233 CCAAACTACT
*
2224243 TTTAGGTTTAAATGTGCCTCTAGTCCCTGTTC
1 TTTAGGTTTAAATGTGCCTCTAGTCCCTGTAC
2224275 TTTAGGTTTAAATGTGCCTCTAGTCCCTGTAC
1 TTTAGGTTTAAATGTGCCTCTAGTCCCTGTAC
2224307 TTTA
1 TTTA
2224311 TGGAAATTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (32 bp):
TTTAGGTTTAAATGTGCCTCTAGTCCCTGTAC
Found at i:2228823 original size:13 final size:13
Alignment explanation
Indices: 2228805--2228832 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2228795 AAAATGACAC
2228805 TTCCCATTTGAAT
1 TTCCCATTTGAAT
2228818 TTCCCATTTGAAT
1 TTCCCATTTGAAT
2228831 TT
1 TT
2228833 ATATAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (13 bp):
TTCCCATTTGAAT
Found at i:2233593 original size:56 final size:56
Alignment explanation
Indices: 2233507--2233617 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
2233497 GATAAAGATC
*
2233507 GATTAACACAGTTCTTACGACCATTCCCTATTATGCACAGTAATAAGAAAAACAGT
1 GATTAACACAGTTCATACGACCATTCCCTATTATGCACAGTAATAAGAAAAACAGT
*
2233563 GATTAACACAGTTCATACGACCATTTCCTATTATGCACAGTAATAAGAAAAACAG
1 GATTAACACAGTTCATACGACCATTCCCTATTATGCACAGTAATAAGAAAAACAG
2233618 ATGCAAATGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.26
Consensus pattern (56 bp):
GATTAACACAGTTCATACGACCATTCCCTATTATGCACAGTAATAAGAAAAACAGT
Found at i:2252305 original size:15 final size:15
Alignment explanation
Indices: 2252285--2252336 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
2252275 ATTACAAAAC
2252285 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
2252300 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
2252319 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
2252334 ATT
1 ATT
2252337 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:2252399 original size:16 final size:16
Alignment explanation
Indices: 2252368--2252404 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
2252358 ATGTGAATAA
2252368 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
2252384 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
2252400 TATTA
1 TATTA
2252405 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:2252448 original size:72 final size:73
Alignment explanation
Indices: 2252314--2252473 Score: 166
Period size: 72 Copynumber: 2.2 Consensus size: 73
2252304 ATAATTGTAA
* * *
2252314 TAAATATTTATTATTAAAATATTAATATTGAATATTTCAATAATATGTGAATAATATTATTTAAA
1 TAAA-ATTTATTATTAAAATA-TAATATTGAATATTTAAATAATATATGAATAATATAATTTAAA
*
2252379 ATTATTATTTT
64 ATTATTA-TAT
* * *
2252390 TAAAATTTATTATTAAAATA-AA-ATTGAA-ATATTAAATAATTTATTAA-AATAATAATTTATA
1 TAAAATTTATTATTAAAATATAATATTGAATAT-TTAAATAATATATGAATAAT-ATAATTTAAA
*
2252451 TTTATTATAT
64 ATTATTATAT
2252461 TAATAATTTATTA
1 TAA-AATTTATTA
2252474 CAAGATTAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
71 10 0.14
72 41 0.56
73 2 0.03
75 16 0.22
76 4 0.05
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.49
Consensus pattern (73 bp):
TAAAATTTATTATTAAAATATAATATTGAATATTTAAATAATATATGAATAATATAATTTAAAAT
TATTATAT
Found at i:2252454 original size:22 final size:22
Alignment explanation
Indices: 2252428--2252471 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
2252418 ATATTAAATA
2252428 ATTTATTAAAATAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
* *
2252450 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
2252472 TACAAGATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTATTAAAATAATAATTTAT
Found at i:2253146 original size:23 final size:23
Alignment explanation
Indices: 2253116--2253163 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
2253106 ATAAAGAATT
2253116 TACTCCGACACTCTCAATCAATG
1 TACTCCGACACTCTCAATCAATG
2253139 TACTCCGACACTCTCAATCAATG
1 TACTCCGACACTCTCAATCAATG
2253162 TA
1 TA
2253164 GCAATATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.27
Consensus pattern (23 bp):
TACTCCGACACTCTCAATCAATG
Found at i:2254339 original size:135 final size:135
Alignment explanation
Indices: 2254178--2254607 Score: 664
Period size: 135 Copynumber: 3.2 Consensus size: 135
2254168 TACAGCCCCT
* * * * * * *
2254178 AAGCAAATATGGCGACTGGTTTCAGCTTCTAGTAATGCAACCAATAGCGAGCTGAAAAAGGATGA
1 AAGCAAAAATGGAGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATAA
* *
2254243 ACCTTTGGAATCATCCAGTAGTGATAGTTCTCAGAATTCTTGTCAAACAAATGGGGATTCAAGAA
66 ACCTTTGGAATCATCTAGTAGTGATAGTTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGAA
2254308 CTGTA
131 CTGTA
* * * * *
2254313 AAGCAAAATTGGCA-ACCGATTTCAGCTTCCAGTAATACGAGTAATAGCAAGCTGAAAAAGGATA
1 AAGCAAAAATGG-AGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATA
*
2254377 AACCTTTGGAATCATCTAGTAGTGATAATTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGA
65 AACCTTTGGAATCATCTAGTAGTGATAGTTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGA
2254442 ACTGTA
130 ACTGTA
2254448 AAGCAAAAATGGAGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATAA
1 AAGCAAAAATGGAGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATAA
* * * *
2254513 ACCTTTGGAATCATCTAGTAGTGATAGTTGTCAGAATTATTGTCAAGCGAACGGGGATTCAAGAA
66 ACCTTTGGAATCATCTAGTAGTGATAGTTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGAA
*
2254578 TTGTA
131 CTGTA
2254583 AAGCAAAAATGGAGACCGGTTTCAG
1 AAGCAAAAATGGAGACCGGTTTCAG
2254608 GAGGCATTGT
Statistics
Matches: 267, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
134 1 0.00
135 266 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (135 bp):
AAGCAAAAATGGAGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATAA
ACCTTTGGAATCATCTAGTAGTGATAGTTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGAA
CTGTA
Found at i:2258536 original size:112 final size:112
Alignment explanation
Indices: 2258339--2258567 Score: 458
Period size: 112 Copynumber: 2.0 Consensus size: 112
2258329 TCTAAATTTG
2258339 GTTACTAAGTTCATTTTGGTACTTGTACACTTATTTTATTCACTTTGGTACTTGAATTTGTCAAT
1 GTTACTAAGTTCATTTTGGTACTTGTACACTTATTTTATTCACTTTGGTACTTGAATTTGTCAAT
2258404 TAAATTCATTTTAGGCCTTAAACTTGAAAAATACACTTTGAGATTGT
66 TAAATTCATTTTAGGCCTTAAACTTGAAAAATACACTTTGAGATTGT
2258451 GTTACTAAGTTCATTTTGGTACTTGTACACTTATTTTATTCACTTTGGTACTTGAATTTGTCAAT
1 GTTACTAAGTTCATTTTGGTACTTGTACACTTATTTTATTCACTTTGGTACTTGAATTTGTCAAT
2258516 TAAATTCATTTTAGGCCTTAAACTTGAAAAATACACTTTGAGATTGT
66 TAAATTCATTTTAGGCCTTAAACTTGAAAAATACACTTTGAGATTGT
2258563 GTTAC
1 GTTAC
2258568 GTAATAGGAC
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 117 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (112 bp):
GTTACTAAGTTCATTTTGGTACTTGTACACTTATTTTATTCACTTTGGTACTTGAATTTGTCAAT
TAAATTCATTTTAGGCCTTAAACTTGAAAAATACACTTTGAGATTGT
Found at i:2258602 original size:112 final size:110
Alignment explanation
Indices: 2258374--2258602 Score: 300
Period size: 112 Copynumber: 2.0 Consensus size: 110
2258364 TACACTTATT
2258374 TTATTCACTTTGGTACTTGAATTTGTCAATTAAATTCATTTTAGGCCTTAAACTTGAAAAATACA
1 TTATTCACTTTGGTACTTGAATTTGTCAATTAAATTCATTTTAGGCCTTAAACTTGAAAAATACA
** ** ** * * **
2258439 CTTTGAGATTGTGTTACTAAGTTCATTTTGGTACTTGTACACTTATT
66 CTTTGAGATTGTGTTACTAAGGACATAATGG-A-TTAAACAATCAGA
2258486 TTATTCACTTTGGTACTTGAATTTGTCAATTAAATTCATTTTAGGCCTTAAACTTGAAAAATACA
1 TTATTCACTTTGGTACTTGAATTTGTCAATTAAATTCATTTTAGGCCTTAAACTTGAAAAATACA
2258551 CTTTGAGATTGTGTTACGTAATAGGACA-AATGG-TTAAACAGATCAGA
66 CTTTGAGATTGTGTTAC-T-A-AGGACATAATGGATTAAACA-ATCAGA
2258598 TTATT
1 TTATT
2258603 GGTTCCCAAT
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
111 5 0.05
112 89 0.86
113 1 0.01
114 4 0.04
115 4 0.04
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.41
Consensus pattern (110 bp):
TTATTCACTTTGGTACTTGAATTTGTCAATTAAATTCATTTTAGGCCTTAAACTTGAAAAATACA
CTTTGAGATTGTGTTACTAAGGACATAATGGATTAAACAATCAGA
Found at i:2262252 original size:20 final size:20
Alignment explanation
Indices: 2262216--2262253 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2262206 TAAAAACTAG
*
2262216 TTTTTTTTGTTTTGTTTTTC
1 TTTTTTTTGTTTGGTTTTTC
2262236 TTTTTTTT-TTCTGGTTTT
1 TTTTTTTTGTT-TGGTTTT
2262254 AATTTGCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (20 bp):
TTTTTTTTGTTTGGTTTTTC
Found at i:2266517 original size:9 final size:9
Alignment explanation
Indices: 2266481--2266523 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
2266471 GCCGTCATTC
2266481 ATGATC-TG
1 ATGATCATG
*
2266489 ATGATGATG
1 ATGATCATG
*
2266498 ATGATGATG
1 ATGATCATG
*
2266507 ATGATCTTG
1 ATGATCATG
2266516 ATGATCAT
1 ATGATCAT
2266524 CACTTGAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
8 5 0.17
9 25 0.83
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (9 bp):
ATGATCATG
Found at i:2266520 original size:3 final size:3
Alignment explanation
Indices: 2266487--2266511 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2266477 ATTCATGATC
2266487 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
2266512 CTTGATGATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:2271858 original size:29 final size:29
Alignment explanation
Indices: 2271825--2271884 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
2271815 AATAAGCGTA
*
2271825 ATTATTTAAAAAAGTTTCAAAATGAATAC
1 ATTATCTAAAAAAGTTTCAAAATGAATAC
*
2271854 ATTATCTAAAAAGGTTTCAAAATGAATAC
1 ATTATCTAAAAAAGTTTCAAAATGAATAC
2271883 AT
1 AT
2271885 ACGTTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.33
Consensus pattern (29 bp):
ATTATCTAAAAAAGTTTCAAAATGAATAC
Found at i:2273654 original size:18 final size:18
Alignment explanation
Indices: 2273631--2273669 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
2273621 GAAATGTGAT
*
2273631 GAAAGTGAATAAATTGGA
1 GAAAGTGAATAAATAGGA
2273649 GAAAGTGAATAAATAGGA
1 GAAAGTGAATAAATAGGA
2273667 GAA
1 GAA
2273670 TATGTACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.28, T:0.18
Consensus pattern (18 bp):
GAAAGTGAATAAATAGGA
Found at i:2277754 original size:7 final size:7
Alignment explanation
Indices: 2277742--2277767 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
2277732 TTTTTATATG
2277742 AAAAAGA
1 AAAAAGA
2277749 AAAAAGA
1 AAAAAGA
2277756 AAAAAGA
1 AAAAAGA
2277763 AAAAA
1 AAAAA
2277768 TAATGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:2278305 original size:21 final size:20
Alignment explanation
Indices: 2278261--2278306 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
2278251 ATAAAAATAT
* *
2278261 TAAAATTTTTAATCTACTTT
1 TAAAATTTTTAATCTAATTA
*
2278281 TAAAATTTTTAGTCTAAATTA
1 TAAAATTTTTAATCT-AATTA
2278302 TAAAA
1 TAAAA
2278307 ATATTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (20 bp):
TAAAATTTTTAATCTAATTA
Found at i:2278340 original size:50 final size:50
Alignment explanation
Indices: 2278246--2278339 Score: 172
Period size: 50 Copynumber: 1.9 Consensus size: 50
2278236 ATTATTTATA
2278246 AAATTATAAAAATATTAAAATTTTTAATCTACTTTTAAAATTTTTAGTCT
1 AAATTATAAAAATATTAAAATTTTTAATCTACTTTTAAAATTTTTAGTCT
*
2278296 AAATTATAAAAATATTAAAATTTTTAGTCTA-TTTTAAAATTTTT
1 AAATTATAAAAATATTAAAATTTTTAATCTACTTTTAAAATTTTT
2278340 TGTAATTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 13 0.30
50 30 0.70
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (50 bp):
AAATTATAAAAATATTAAAATTTTTAATCTACTTTTAAAATTTTTAGTCT
Found at i:2279405 original size:13 final size:13
Alignment explanation
Indices: 2279373--2279419 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
2279363 ATTTTAATTT
2279373 TTTTAATATGCTTAA
1 TTTTAATAT--TTAA
*
2279388 ATTTAATATTTAA
1 TTTTAATATTTAA
2279401 TTTT-ATACTTTAA
1 TTTTAATA-TTTAA
2279414 TTTTAA
1 TTTTAA
2279420 ATAAAATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
12 3 0.11
13 16 0.57
14 1 0.04
15 8 0.29
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (13 bp):
TTTTAATATTTAA
Found at i:2305365 original size:32 final size:32
Alignment explanation
Indices: 2305322--2305386 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
2305312 GTGGGTATCT
*
2305322 TTAATTGTCTTATTTCTTGAATCTATCCATTC
1 TTAATTATCTTATTTCTTGAATCTATCCATTC
2305354 TTAATTATCTTATTTCTTGAATCTATCCATTC
1 TTAATTATCTTATTTCTTGAATCTATCCATTC
2305386 T
1 T
2305387 AGATCCAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.54
Consensus pattern (32 bp):
TTAATTATCTTATTTCTTGAATCTATCCATTC
Found at i:2305386 original size:16 final size:16
Alignment explanation
Indices: 2305335--2305386 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
2305325 ATTGTCTTAT
2305335 TTCTTGAATCTATCCA
1 TTCTTGAATCTATCCA
*
2305351 TTCTT-AAT-TATCTTA
1 TTCTTGAATCTATC-CA
2305366 TTTCTTGAATCTATCCA
1 -TTCTTGAATCTATCCA
2305383 TTCT
1 TTCT
2305387 AGATCCAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 4 0.13
15 4 0.13
16 14 0.47
17 4 0.13
18 4 0.13
ACGTcount: A:0.23, C:0.21, G:0.04, T:0.52
Consensus pattern (16 bp):
TTCTTGAATCTATCCA
Found at i:2306384 original size:10 final size:10
Alignment explanation
Indices: 2306369--2306393 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
2306359 TTGGTGTATA
2306369 TATATATATT
1 TATATATATT
2306379 TATATATATT
1 TATATATATT
2306389 TATAT
1 TATAT
2306394 CAATCAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATATATATT
Found at i:2318982 original size:14 final size:14
Alignment explanation
Indices: 2318963--2318993 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
2318953 ATTGAGATCG
2318963 AACCTAACAGAAAT
1 AACCTAACAGAAAT
2318977 AACCTAACAGAAAT
1 AACCTAACAGAAAT
2318991 AAC
1 AAC
2318994 TAGGCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.58, C:0.23, G:0.06, T:0.13
Consensus pattern (14 bp):
AACCTAACAGAAAT
Found at i:2321778 original size:26 final size:26
Alignment explanation
Indices: 2321749--2321852 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
2321739 ATTCCCATCT
*
2321749 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
2321775 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* * *
2321801 TGGAATATTTATCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
2321827 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
2321853 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:2328865 original size:26 final size:26
Alignment explanation
Indices: 2328836--2328939 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
2328826 ATTCCCATCT
*
2328836 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
2328862 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* * *
2328888 TGGAATATTTACCTAATCCATTATTA
1 TGGAACATTTACCTAACCCATTATCA
*
2328914 TGAAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
2328940 ATTTGTACCA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:2335662 original size:30 final size:29
Alignment explanation
Indices: 2335596--2335675 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
2335586 TTAGTAAATC
*
2335596 TAAATTAATAACATATATTTATATATTTCCT
1 TAAATTAAT-A-ATATATTTATATATTACCT
*
2335627 TAAATTAATAATATATTTAGT-TGTTACCAT
1 TAAATTAATAATATATTTA-TATATTACC-T
*
2335657 TAAATTAATAACATATTTA
1 TAAATTAATAATATATTTA
2335676 AAAAAAAACT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
29 14 0.32
30 21 0.48
31 9 0.20
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (29 bp):
TAAATTAATAATATATTTATATATTACCT
Found at i:2338892 original size:22 final size:22
Alignment explanation
Indices: 2338866--2338907 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
2338856 GTAAATACCC
2338866 TTTTGATCCCTATCAATTTTCT
1 TTTTGATCCCTATCAATTTTCT
2338888 TTTTGATCCCTATCAATTTT
1 TTTTGATCCCTATCAATTTT
2338908 GAAAATAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.21, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTTGATCCCTATCAATTTTCT
Found at i:2340603 original size:23 final size:23
Alignment explanation
Indices: 2340560--2340603 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
2340550 GACTATTAAA
*
2340560 ATAAAAAAAATTATATTTTTACT
1 ATAAAAAAAATTATATATTTACT
*
2340583 ATAATAAAAA-TATATAATTTA
1 ATAAAAAAAATTATAT-ATTTA
2340604 ATTTCGACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
ATAAAAAAAATTATATATTTACT
Found at i:2341608 original size:214 final size:210
Alignment explanation
Indices: 2341236--2341738 Score: 846
Period size: 214 Copynumber: 2.4 Consensus size: 210
2341226 AATATTAAAG
*
2341236 TAAATATATATATAGAATCATATTAGTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGC
1 TAAATATATATATATAATCATATTAGTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGC
*
2341301 ATTATTAAAATTAAATTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTAGAA
66 ATTATTAAAATTAAACTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTAGAA
*
2341366 AATAACTATTATTGTAATAAGATACATGTTTTATTAGGTATAAGTATTTAAATTGTTGTTTTTAT
131 AATAACTATTATTGTAATAAGATACATGTTTTATTAGGTATAAGTATTTAAATTGTTATTTTTAT
*
2341431 AATGTGATACATGCG
196 AATGTGATACATGCA
* *
2341446 TAAATCTATATATATATATAATCATATTAGTGAATCTACTAATACATACTTTATCCGGATAAAGT
1 T-AA---ATATATATATATAATCATATTAGTGAATCTGCTAATACATACTTCATCCGGATAAAGT
*
2341511 ATGCATTGTTAAAATTAAACTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTA-TT
62 ATGCATTATTAAAATTAAACTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTT
* * *
2341575 AGGAAAATAACTATTATTGTAATGAGATACATGTTTTATTATGTATAAGTATTTAAATTTTTATT
127 A-GAAAATAACTATTATTGTAATAAGATACATGTTTTATTAGGTATAAGTATTTAAATTGTTATT
*
2341640 TTTGTAATGTGATACATGCA
191 TTTATAATGTGATACATGCA
*
2341660 TAAATATATATATATAATCATATTAGTGAATTTGCTAATACATACTTCATCCGGATAAAGTATGC
1 TAAATATATATATATAATCATATTAGTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGC
2341725 ATTATTAAAATTAA
66 ATTATTAAAATTAA
2341739 TGGTTTGTTT
Statistics
Matches: 273, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
210 73 0.27
211 2 0.01
213 5 0.02
214 193 0.71
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (210 bp):
TAAATATATATATATAATCATATTAGTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGC
ATTATTAAAATTAAACTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTAGAA
AATAACTATTATTGTAATAAGATACATGTTTTATTAGGTATAAGTATTTAAATTGTTATTTTTAT
AATGTGATACATGCA
Found at i:2349058 original size:23 final size:22
Alignment explanation
Indices: 2349025--2349081 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
2349015 ATGTTATTTT
2349025 TTTAA-AATTTTAAAATTAATA
1 TTTAATAATTTTAAAATTAATA
* * *
2349046 TTTATATTATTTTTAATTTAATA
1 TTTA-ATAATTTTAAAATTAATA
2349069 TTTAATAATTTTA
1 TTTAATAATTTTA
2349082 TATATTTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 4 0.14
22 8 0.28
23 17 0.59
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTAATAATTTTAAAATTAATA
Found at i:2349217 original size:18 final size:18
Alignment explanation
Indices: 2349191--2349226 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2349181 TATGTGTTAT
*
2349191 AAATTACATAATATAAAA
1 AAATAACATAATATAAAA
*
2349209 AAATAACATAATGTAAAA
1 AAATAACATAATATAAAA
2349227 TATTATTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.06, G:0.03, T:0.25
Consensus pattern (18 bp):
AAATAACATAATATAAAA
Found at i:2351883 original size:25 final size:26
Alignment explanation
Indices: 2351844--2351898 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
2351834 TTTTAATTTT
*
2351844 TTAAAAATTATTATATAA-TTTACAAC
1 TTAAAAATTAGTATA-AATTTTACAAC
*
2351870 TTAAAAATT-GTATAAATTTTATAAC
1 TTAAAAATTAGTATAAATTTTACAAC
2351895 TTAA
1 TTAA
2351899 TTCACATCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 15 0.58
26 9 0.35
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (26 bp):
TTAAAAATTAGTATAAATTTTACAAC
Found at i:2353544 original size:6 final size:6
Alignment explanation
Indices: 2353533--2353557 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
2353523 TAATGATCTT
2353533 TGATCA TGATCA TGATCA TGATCA T
1 TGATCA TGATCA TGATCA TGATCA T
2353558 CACGCCAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (6 bp):
TGATCA
Found at i:2355284 original size:3 final size:3
Alignment explanation
Indices: 2355276--2355341 Score: 105
Period size: 3 Copynumber: 22.0 Consensus size: 3
2355266 GTATATACAT
* * *
2355276 ATA ATA ATA ATG ATG ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2355324 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
2355342 TGAAAATACA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:2356417 original size:17 final size:17
Alignment explanation
Indices: 2356395--2356428 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
2356385 GACGGGTTAT
*
2356395 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTAGTTTAG
2356412 TGGGTTGTTTAGTTTAG
1 TGGGTTGTTTAGTTTAG
2356429 GGCCCAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.00, G:0.38, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTAGTTTAG
Found at i:2363219 original size:30 final size:30
Alignment explanation
Indices: 2363183--2363244 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
2363173 GCTTATTTTA
*
2363183 TTATTAATTTTGTTATTATTTTAAAGACAT
1 TTATTAATTTTCTTATTATTTTAAAGACAT
* *
2363213 TTATTAATTTTCTTATTATTTTAGAGATAT
1 TTATTAATTTTCTTATTATTTTAAAGACAT
2363243 TT
1 TT
2363245 GCTTGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (30 bp):
TTATTAATTTTCTTATTATTTTAAAGACAT
Found at i:2363385 original size:12 final size:12
Alignment explanation
Indices: 2363368--2363402 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2363358 TATATTTTTT
*
2363368 AAAAATTATATA
1 AAAAATAATATA
2363380 AAAAATAATATA
1 AAAAATAATATA
*
2363392 AAAATTAATAT
1 AAAAATAATAT
2363403 GGGTGGGTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAAATAATATA
Found at i:2365958 original size:40 final size:42
Alignment explanation
Indices: 2365901--2365979 Score: 101
Period size: 40 Copynumber: 1.9 Consensus size: 42
2365891 TTTTATTTTT
*
2365901 TTTAGAAAACAATGAGAG-CACTC-CACAGTTTCTCATCCAG
1 TTTAGAAAACAAAGAGAGTCACTCACACAGTTTCTCATCCAG
*
2365941 TTTAGAAAA-AAGAGAGAGTTACTCAACACAGTTTCTCAT
1 TTTAGAAAACAA-AGAGAGTCACTC-ACACAGTTTCTCAT
2365980 ATACATGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
39 2 0.06
40 14 0.42
41 4 0.12
43 13 0.39
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (42 bp):
TTTAGAAAACAAAGAGAGTCACTCACACAGTTTCTCATCCAG
Found at i:2369274 original size:17 final size:19
Alignment explanation
Indices: 2369252--2369286 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
2369242 ATTTTTTAAA
2369252 AATATTT-AT-ATTATATT
1 AATATTTAATAATTATATT
2369269 AATATTTAATAATTATAT
1 AATATTTAATAATTATAT
2369287 ATATTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AATATTTAATAATTATATT
Found at i:2375808 original size:16 final size:16
Alignment explanation
Indices: 2375787--2375823 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
2375777 TATATTCGTT
2375787 GATTGAGTTTTAACTC
1 GATTGAGTTTTAACTC
2375803 GATTGAGTTTTAACTC
1 GATTGAGTTTTAACTC
2375819 GATTG
1 GATTG
2375824 GTATTGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43
Consensus pattern (16 bp):
GATTGAGTTTTAACTC
Found at i:2376307 original size:24 final size:24
Alignment explanation
Indices: 2376280--2376331 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
2376270 TTAGTAAGTC
*
2376280 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
2376304 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
2376328 AAAT
1 AAAT
2376332 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:2378275 original size:24 final size:24
Alignment explanation
Indices: 2378248--2378299 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
2378238 TTAGTAAGTC
*
2378248 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
2378272 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
2378296 AAAT
1 AAAT
2378300 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:2378662 original size:25 final size:26
Alignment explanation
Indices: 2378620--2378679 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
2378610 AAAACGAGGT
* *
2378620 AAGTTCACAGGCCCAGCTTG-GATGA
1 AAGTTCGCAAGCCCAGCTTGCGATGA
* *
2378645 AAGTTCGCAAGCCTAGCTTGCGATGT
1 AAGTTCGCAAGCCCAGCTTGCGATGA
*
2378671 AAGCTCGCA
1 AAGTTCGCA
2378680 GATCCAGCTC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 17 0.59
26 12 0.41
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (26 bp):
AAGTTCGCAAGCCCAGCTTGCGATGA
Found at i:2378688 original size:26 final size:24
Alignment explanation
Indices: 2378632--2378688 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 24
2378622 GTTCACAGGC
*
2378632 CCAGCTTGGATGAAAGTTCGCAAG
1 CCAGCTTGGATGAAAGCTCGCAAG
* *
2378656 CCTAGCTTGCGATGTAAGCTCGCAGAT
1 CC-AGCTTG-GATGAAAGCTCGCA-AG
2378683 CCAGCT
1 CCAGCT
2378689 CGCCACAGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 2 0.07
25 6 0.22
26 16 0.59
27 3 0.11
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (24 bp):
CCAGCTTGGATGAAAGCTCGCAAG
Found at i:2380841 original size:51 final size:50
Alignment explanation
Indices: 2380716--2380841 Score: 123
Period size: 51 Copynumber: 2.5 Consensus size: 50
2380706 TTGATATAAC
* *
2380716 AACAAATTTAGCCCT-CAAAGTTTGCACATTATGTCAATTTGATATTGATTT
1 AACAAATTTAG-CCTGCAAA-TTTACACATTATGTCAATTTGATATTAATTT
* * *
2380767 AACAAATTTAG-CTCGTAATATTTACACATTTTGTCAATTTGGTCA-TAATTT
1 AACAAATTTAGCCT-GCAA-ATTTACACATTATGTCAATTTGAT-ATTAATTT
*
2380818 AATAAATTTAGCCTGCAACATTTA
1 AACAAATTTAGCCTGCAA-ATTTA
2380842 TACAGAATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
49 2 0.03
51 56 0.90
52 4 0.06
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (50 bp):
AACAAATTTAGCCTGCAAATTTACACATTATGTCAATTTGATATTAATTT
Found at i:2381440 original size:20 final size:20
Alignment explanation
Indices: 2381415--2381452 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2381405 GGGTTAACCA
*
2381415 TAAACCTAAACATAAACCGT
1 TAAACCCAAACATAAACCGT
2381435 TAAACCCAAACATAAACC
1 TAAACCCAAACATAAACC
2381453 ATAGAACTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.29, G:0.03, T:0.16
Consensus pattern (20 bp):
TAAACCCAAACATAAACCGT
Found at i:2383071 original size:29 final size:32
Alignment explanation
Indices: 2383019--2383094 Score: 95
Period size: 30 Copynumber: 2.4 Consensus size: 32
2383009 ACCATTTTAA
*
2383019 TAAACTATATATTTTTATAATTTTTAAAAG-AT
1 TAAAATATA-ATTTTTATAATTTTTAAAAGAAT
* *
2383051 TAAATTA-AATTTTTAT-ATTTTTAAGAGAAT
1 TAAAATATAATTTTTATAATTTTTAAAAGAAT
2383081 TAAAATATAATTTT
1 TAAAATATAATTTT
2383095 ACCATTACTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
29 10 0.26
30 16 0.41
31 7 0.18
32 6 0.15
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.50
Consensus pattern (32 bp):
TAAAATATAATTTTTATAATTTTTAAAAGAAT
Found at i:2383095 original size:30 final size:30
Alignment explanation
Indices: 2383025--2383095 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 30
2383015 TTAATAAACT
*
2383025 ATATATTTTTATAATTTTTAAAAGATTAAA
1 ATATAATTTTATAATTTTTAAAAGATTAAA
* *
2383055 TTA-AATTTT-TATATTTTTAAGAGAATTAAA
1 ATATAATTTTATA-ATTTTTAAAAG-ATTAAA
2383085 ATATAATTTTA
1 ATATAATTTTA
2383096 CCATTACTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
28 2 0.06
29 15 0.45
30 10 0.30
31 6 0.18
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (30 bp):
ATATAATTTTATAATTTTTAAAAGATTAAA
Found at i:2391825 original size:59 final size:59
Alignment explanation
Indices: 2391740--2391855 Score: 153
Period size: 59 Copynumber: 2.0 Consensus size: 59
2391730 AACAAGTGAA
** * *
2391740 GGGCTAAATTCCTTGAATTAAAAGTAGAA-GAATTAAATTTAAAAAATTGAAAAGAACGG
1 GGGCTAAATTCCTCAAAATAAAAGTAGAATG-ACTAAATTTAAAAAATTGAAAAGAACGG
* * *
2391799 GGGCTAAATTCCTCAAAATAAGAGTAGAATGACTAAATTTCAAAAATTGAAACGAAC
1 GGGCTAAATTCCTCAAAATAAAAGTAGAATGACTAAATTTAAAAAATTGAAAAGAAC
2391856 AAGGACTGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
59 48 0.98
60 1 0.02
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.24
Consensus pattern (59 bp):
GGGCTAAATTCCTCAAAATAAAAGTAGAATGACTAAATTTAAAAAATTGAAAAGAACGG
Found at i:2392018 original size:30 final size:29
Alignment explanation
Indices: 2391980--2392040 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
2391970 AAATTCCTCG
* *
2391980 AATTAAAAGTAAT-TGGACTGTAATGACAA
1 AATTAAAAG-AATAGGGACTGAAATGACAA
2392009 AATTGAAAAGAATAGGGACTGAAATGACAA
1 AATT-AAAAGAATAGGGACTGAAATGACAA
2392039 AA
1 AA
2392041 AAATAAGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.52, C:0.07, G:0.20, T:0.21
Consensus pattern (29 bp):
AATTAAAAGAATAGGGACTGAAATGACAA
Found at i:2398406 original size:14 final size:14
Alignment explanation
Indices: 2398387--2398423 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
2398377 AAAATTGTTT
2398387 GTTCTTATTTTTCC
1 GTTCTTATTTTTCC
2398401 GTTCTTATTTTTCC
1 GTTCTTATTTTTCC
*
2398415 TTTCTTATT
1 GTTCTTATT
2398424 AATTTGCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.08, C:0.19, G:0.05, T:0.68
Consensus pattern (14 bp):
GTTCTTATTTTTCC
Found at i:2413427 original size:30 final size:30
Alignment explanation
Indices: 2413356--2413427 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
2413346 CATATTGAAT
*
2413356 TTTGGTGATAAAAAAAATAAAATTGAACAA
1 TTTGGTGATAAAAAAAATAAAATTAAACAA
* * ** *
2413386 TCTGGTAATAAAAATGATAAAATTAAATAA
1 TTTGGTGATAAAAAAAATAAAATTAAACAA
*
2413416 TTTGGCGATAAA
1 TTTGGTGATAAA
2413428 TAGTTTAGTA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.53, C:0.04, G:0.14, T:0.29
Consensus pattern (30 bp):
TTTGGTGATAAAAAAAATAAAATTAAACAA
Found at i:2414908 original size:16 final size:14
Alignment explanation
Indices: 2414887--2414924 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
2414877 TAAAATAATT
2414887 TTTTTAAATTTAAATA
1 TTTTTAAATTT--ATA
2414903 TTTTTAAATTTATA
1 TTTTTAAATTTATA
2414917 TTTTTAAA
1 TTTTTAAA
2414925 AAATTTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 11 0.50
16 11 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTTTAAATTTATA
Found at i:2414950 original size:33 final size:31
Alignment explanation
Indices: 2414870--2414950 Score: 76
Period size: 33 Copynumber: 2.5 Consensus size: 31
2414860 TCTCTCAATA
**
2414870 AAAATTTTAAAATA-ATTTTTTTAAATTTA-
1 AAAATTTTAAAATATATTTTTAAAAATTTAT
* *
2414899 AATATTTTTAAATTTATATTTTTAAAAAATTTAT
1 AA-AATTTTAAA-ATATATTTTT-AAAAATTTAT
2414933 AAACATTTTAAAATATAT
1 AAA-ATTTTAAAATATAT
2414951 AAAGAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
29 2 0.05
30 8 0.20
31 2 0.05
32 6 0.15
33 13 0.32
34 9 0.22
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (31 bp):
AAAATTTTAAAATATATTTTTAAAAATTTAT
Found at i:2416497 original size:11 final size:11
Alignment explanation
Indices: 2416481--2416513 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
2416471 TATTGTTGTG
2416481 TCTGGTTTTAA
1 TCTGGTTTTAA
2416492 TCTGGTTTTAA
1 TCTGGTTTTAA
2416503 TCTGGTTTTAA
1 TCTGGTTTTAA
2416514 CTTAGGTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (11 bp):
TCTGGTTTTAA
Found at i:2418134 original size:4 final size:4
Alignment explanation
Indices: 2418125--2418150 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
2418115 TATTGCAGAA
2418125 ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT AT
2418151 CAACATAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:2420824 original size:19 final size:19
Alignment explanation
Indices: 2420800--2420836 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2420790 AATATGTATG
*
2420800 AAATTAAAATGAACAAAAT
1 AAATTAAAATAAACAAAAT
*
2420819 AAATTAAATTAAACAAAA
1 AAATTAAAATAAACAAAA
2420837 CAAAATTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.22
Consensus pattern (19 bp):
AAATTAAAATAAACAAAAT
Found at i:2421503 original size:11 final size:11
Alignment explanation
Indices: 2421489--2421531 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
2421479 CGCAAATGCC
*
2421489 AACAAAATAGT
1 AACAAAATAAT
*
2421500 AACAATATAAT
1 AACAAAATAAT
*
2421511 AGCAAAATAAT
1 AACAAAATAAT
2421522 AACAAAATAA
1 AACAAAATAA
2421532 CAGGAAAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.67, C:0.09, G:0.05, T:0.19
Consensus pattern (11 bp):
AACAAAATAAT
Found at i:2421519 original size:22 final size:22
Alignment explanation
Indices: 2421491--2421540 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
2421481 CAAATGCCAA
* * *
2421491 CAAAATAGTAACAATATAATAG
1 CAAAATAATAACAAAATAACAG
2421513 CAAAATAATAACAAAATAACAG
1 CAAAATAATAACAAAATAACAG
*
2421535 GAAAAT
1 CAAAAT
2421541 GGCAGCAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.64, C:0.10, G:0.08, T:0.18
Consensus pattern (22 bp):
CAAAATAATAACAAAATAACAG
Found at i:2422168 original size:22 final size:22
Alignment explanation
Indices: 2422128--2422183 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
2422118 TAAAAAAATA
*
2422128 TAAATTTAAA-AGTTTTAT-AT
1 TAAATTTAAATAATTTTATAAT
*
2422148 TCAAATTTATATAATTTTATAAT
1 T-AAATTTAAATAATTTTATAAT
2422171 TAAATTTAAATAA
1 TAAATTTAAATAA
2422184 AATAATATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.03
21 8 0.27
22 18 0.60
23 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TAAATTTAAATAATTTTATAAT
Found at i:2428504 original size:21 final size:22
Alignment explanation
Indices: 2428480--2428522 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
2428470 CGGGAAACCA
2428480 AATT-AAAATTTT-AATTTAATT
1 AATTAAAAATTTTCAA-TTAATT
2428501 AATTAAAAATTTTCAATTAATT
1 AATTAAAAATTTTCAATTAATT
2428523 TACTTGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 14 0.70
23 2 0.10
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTAAAAATTTTCAATTAATT
Found at i:2430124 original size:17 final size:19
Alignment explanation
Indices: 2430104--2430147 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
2430094 ACAGATGTAA
2430104 AAAAAATTATAGAAA-A-T
1 AAAAAATTATAGAAATATT
2430121 -AAAAATATATAGAAATATT
1 AAAAAAT-TATAGAAATATT
2430140 AAAAAATT
1 AAAAAATT
2430148 TAAATTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 6 0.26
17 8 0.35
18 1 0.04
19 2 0.09
20 6 0.26
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (19 bp):
AAAAAATTATAGAAATATT
Found at i:2432256 original size:15 final size:17
Alignment explanation
Indices: 2432227--2432269 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
2432217 TTTAACCTTT
2432227 TAAAAGTTATAAAAAT-A
1 TAAAA-TTATAAAAATAA
*
2432244 T-AAATTATTAAAATAA
1 TAAAATTATAAAAATAA
2432260 TAAAATTATA
1 TAAAATTATA
2432270 TTTTTACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 5 0.23
17 8 0.36
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
TAAAATTATAAAAATAA
Found at i:2433342 original size:31 final size:30
Alignment explanation
Indices: 2433262--2433383 Score: 88
Period size: 31 Copynumber: 4.0 Consensus size: 30
2433252 GGATCTATTT
*
2433262 AAAATTTTCAAAATTTT-AAGGGTTTAA-TA
1 AAAATTTT-AAAATTTTGAAGGGTCTAATTA
* * *
2433291 AGAATCTTCAAAAATATTGAAGGGTCTAATTA
1 AAAAT-TT-TAAAATTTTGAAGGGTCTAATTA
*
2433323 AAAATTTTAAAACTTTTGAATGG-CTTAATTA
1 AAAATTTTAAAA-TTTTGAAGGGTC-TAATTA
* * * *
2433354 GACATTTTAAATTTTTTGAAGGGACTAATT
1 AAAATTTTAAA-ATTTTGAAGGGTCTAATT
2433384 CAGATTTTCA
Statistics
Matches: 73, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
29 4 0.05
30 14 0.19
31 48 0.66
32 7 0.10
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (30 bp):
AAAATTTTAAAATTTTGAAGGGTCTAATTA
Found at i:2436143 original size:40 final size:39
Alignment explanation
Indices: 2436035--2436186 Score: 225
Period size: 40 Copynumber: 3.8 Consensus size: 39
2436025 ATTCCACTCC
* * *
2436035 CCCATGCTACTTTGTTTTATTATTAATTAAAACTACTC-
1 CCCATACTATTTTGTTTTATTATTAATTAAAACTATTCT
2436073 CTCCATACTATTTTGTTTTATTATTAATTAAAACTATTCT
1 C-CCATACTATTTTGTTTTATTATTAATTAAAACTATTCT
*
2436113 CCCGTACTATTTTGTTTTTATTATTAATTAAAACTATTCT
1 CCCATACTATTTTG-TTTTATTATTAATTAAAACTATTCT
*
2436153 CTCATACTATTTTGTTTTTATTATTAATTAAAAC
1 CCCATACTATTTTG-TTTTATTATTAATTAAAAC
2436187 CATACTTTAT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 46 0.44
40 58 0.55
ACGTcount: A:0.30, C:0.16, G:0.04, T:0.51
Consensus pattern (39 bp):
CCCATACTATTTTGTTTTATTATTAATTAAAACTATTCT
Found at i:2436210 original size:79 final size:78
Alignment explanation
Indices: 2436044--2436192 Score: 203
Period size: 79 Copynumber: 1.9 Consensus size: 78
2436034 CCCCATGCTA
* *
2436044 CTTTGTTTTATTATTAATTAAAACTACTCCTCCATACTATTTTGTTTTATTATTAATTAAAACTA
1 CTTTTTTTTATTATTAATTAAAACTACTCCTCCATACTATTTTGTTTTATTATTAATTAAAACCA
*
2436109 TTCTCCCGTACTATT
66 TACT--CGTACTATT
* *
2436124 -TTGTTTTTATTATTAATTAAAACTA-TTCTCTCATACTATTTTGTTTTTATTATTAATTAAAAC
1 CTTTTTTTTATTATTAATTAAAACTACTCCTC-CATACTATTTTG-TTTTATTATTAATTAAAAC
2436187 CATACT
64 CATACT
2436193 TTATTTTCTC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 4 0.06
79 35 0.56
80 23 0.37
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.52
Consensus pattern (78 bp):
CTTTTTTTTATTATTAATTAAAACTACTCCTCCATACTATTTTGTTTTATTATTAATTAAAACCA
TACTCGTACTATT
Found at i:2436229 original size:20 final size:20
Alignment explanation
Indices: 2436204--2436242 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2436194 TATTTTCTCT
*
2436204 TTTTTTTTATCAAAAAAACC
1 TTTTTTTTAACAAAAAAACC
*
2436224 TTTTTTTTAAGAAAAAAAC
1 TTTTTTTTAACAAAAAAAC
2436243 AACAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.44
Consensus pattern (20 bp):
TTTTTTTTAACAAAAAAACC
Found at i:2436672 original size:22 final size:23
Alignment explanation
Indices: 2436624--2436680 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
2436614 AACCCCCTCT
**
2436624 AATACAATCTCTTCTCTCCCCAA
1 AATACAATCGATTCTCTCCCCAA
*
2436647 AATACAATCGATTCT-TCCTCAA
1 AATACAATCGATTCTCTCCCCAA
*
2436669 AATACCATCGAT
1 AATACAATCGAT
2436681 CCCCCCATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.35, C:0.32, G:0.04, T:0.30
Consensus pattern (23 bp):
AATACAATCGATTCTCTCCCCAA
Found at i:2440061 original size:13 final size:13
Alignment explanation
Indices: 2440045--2440075 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2440035 AAATAACAAT
2440045 ATAAAAAAATTTA
1 ATAAAAAAATTTA
2440058 ATAAAAAAATTTA
1 ATAAAAAAATTTA
2440071 A-AAAA
1 ATAAAA
2440076 TATGGACAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
ATAAAAAAATTTA
Found at i:2443627 original size:17 final size:17
Alignment explanation
Indices: 2443605--2443639 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
2443595 TATATAAACT
2443605 ATTTGATGAGGGAAGTG
1 ATTTGATGAGGGAAGTG
2443622 ATTTGATGAGGGAAGTG
1 ATTTGATGAGGGAAGTG
2443639 A
1 A
2443640 CAAAGATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.40, T:0.29
Consensus pattern (17 bp):
ATTTGATGAGGGAAGTG
Found at i:2451560 original size:41 final size:41
Alignment explanation
Indices: 2451514--2451602 Score: 160
Period size: 41 Copynumber: 2.2 Consensus size: 41
2451504 TATTGATGAA
*
2451514 AAAATATTGGTCAATAATTAATAACGATTCACCTGAAAACT
1 AAAATATGGGTCAATAATTAATAACGATTCACCTGAAAACT
*
2451555 AAAATATGGGTCAATAATTAATAACGATTCACCTGAAGACT
1 AAAATATGGGTCAATAATTAATAACGATTCACCTGAAAACT
2451596 AAAATAT
1 AAAATAT
2451603 AGAAATGATC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.28
Consensus pattern (41 bp):
AAAATATGGGTCAATAATTAATAACGATTCACCTGAAAACT
Found at i:2455192 original size:22 final size:22
Alignment explanation
Indices: 2455167--2455214 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
2455157 ATTAAACATG
*
2455167 GAAAAAAA-TTAAATACTAAATT
1 GAAAAAAACTTAAATAC-AAAAT
2455189 GAAAAAAACTTAAATACAAAAT
1 GAAAAAAACTTAAATACAAAAT
2455211 GAAA
1 GAAA
2455215 CATTGAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (22 bp):
GAAAAAAACTTAAATACAAAAT
Found at i:2456363 original size:154 final size:154
Alignment explanation
Indices: 2456161--2456780 Score: 889
Period size: 154 Copynumber: 4.0 Consensus size: 154
2456151 ATATGTTTGA
* * * * *
2456161 TGTGTGAATTACATTTGTTTTTATTAAGCTTCTTGTAAACGAGTCTTGTTTTGTTATAATTCAGT
1 TGTGAGAATTACATTTATTTTGATTAAGCTTCTTATAAACGAGTCTTGTTTTTTTATAATTCAGT
*
2456226 TTACGATTCGTTTTTTCGCTTTGGTGATTTGGTAGATTGGCTGGTTTTTGGAATGTGAATTTAGT
66 TTACGATTCGTTTTTTCGCTTTGGTGATTTGGTAGATTGGCTGGTTTTTGAAATGTGAATTTAGT
2456291 GTTTTGTGTTGATTTTCAGTGAGT
131 GTTTTGTGTTGATTTTCAGTGAGT
*
2456315 TGTGAGAATTACATTTATTTTGATTAAGCTTCTTATAAACGAGGCTTGTTTTTTTATAATTCAGT
1 TGTGAGAATTACATTTATTTTGATTAAGCTTCTTATAAACGAGTCTTGTTTTTTTATAATTCAGT
*
2456380 TTACGATTCGTTTTTTCGCTTTGGTGATTTGGTAGATTGGCTGGTTTTTGGAA--TG--TTTAGT
66 TTACGATTCGTTTTTTCGCTTTGGTGATTTGGTAGATTGGCTGGTTTTTGAAATGTGAATTTAGT
2456441 GTTTTGTGTTGATTTTCAGTGAGT
131 GTTTTGTGTTGATTTTCAGTGAGT
* *
2456465 TGTGAGAATTACATTTATTTTGATTAAGCTTCTTATAAATGAGTCTTG-TATTTTATAATTCAGT
1 TGTGAGAATTACATTTATTTTGATTAAGCTTCTTATAAACGAGTCTTGTTTTTTTATAATTCAGT
*
2456529 TTACGATTCGTTTTTTCGCTTTGGTGATTTGGTCGATTGGCTGGTTTTTGAAATGTGAATTTAGT
66 TTACGATTCGTTTTTTCGCTTTGGTGATTTGGTAGATTGGCTGGTTTTTGAAATGTGAATTTAGT
* * * *
2456594 GTTTTGTATTGATGTT-AGTGGGC
131 GTTTTGTGTTGATTTTCAGTGAGT
**
2456617 TGTGAGAATTACATTTCATTTTGATTAAGCTTCTTATAAACGTTTCTTGTTTTTTTATAATTCAG
1 TGTGAGAATTACATTT-ATTTTGATTAAGCTTCTTATAAACGAGTCTTGTTTTTTTATAATTCAG
* * * * * *
2456682 TTTAGGATTCAATTTTTT-GCTTTGGTTTG-TTTGGTCGATTGGCTGTTTTTTTTAAACGTGAAT
65 TTTACGATTC-GTTTTTTCGCTTTGG--TGATTTGGTAGATTGGCTG-GTTTTTGAAATGTGAAT
* * *
2456745 TGAGTGTTTCGTGTTG-TTGTTTAGTGAGT
126 TTAGTGTTTTGTGTTGATT-TTCAGTGAGT
2456774 TGTGAGA
1 TGTGAGA
2456781 TTGAGTCAAA
Statistics
Matches: 424, Mismatches: 30, Indels: 21
0.89 0.06 0.04
Matches are distributed among these distances:
149 66 0.16
150 76 0.18
151 2 0.00
152 23 0.05
153 49 0.12
154 142 0.33
155 23 0.05
156 31 0.07
157 12 0.03
ACGTcount: A:0.20, C:0.08, G:0.22, T:0.50
Consensus pattern (154 bp):
TGTGAGAATTACATTTATTTTGATTAAGCTTCTTATAAACGAGTCTTGTTTTTTTATAATTCAGT
TTACGATTCGTTTTTTCGCTTTGGTGATTTGGTAGATTGGCTGGTTTTTGAAATGTGAATTTAGT
GTTTTGTGTTGATTTTCAGTGAGT
Found at i:2461446 original size:18 final size:17
Alignment explanation
Indices: 2461416--2461457 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
2461406 TTATTGTTTG
2461416 TAATATTTTTATATTATA
1 TAAT-TTTTTATATTATA
*
2461434 TTATTTTTATATATTATA
1 TAATTTTT-TATATTATA
2461452 TAATTT
1 TAATTT
2461458 ATAATTTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TAATTTTTTATATTATA
Found at i:2463054 original size:3 final size:3
Alignment explanation
Indices: 2463016--2463124 Score: 86
Period size: 3 Copynumber: 36.7 Consensus size: 3
2463006 ATGTATTAGT
* *
2463016 ATA ATA GTA ATAA ATA A-A AGA A-A ATA A-A ACTA ATA ATA ATTA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA A-TA ATA
* **
2463061 ATA GTA ATA ATA ATA ATA ACC ATA ATA ATA ATA AGCTA ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA
2463107 AT- ATA ATA AT- ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
2463125 GAGCAAATAA
Statistics
Matches: 87, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
2 12 0.14
3 64 0.74
4 8 0.09
5 3 0.03
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:2465152 original size:88 final size:88
Alignment explanation
Indices: 2464905--2465611 Score: 883
Period size: 88 Copynumber: 8.1 Consensus size: 88
2464895 GATCTGTAAT
* * * * *
2464905 TCTTCAACCAGCTCCA-CTACAACCGAGAGAGGTAAGG-TT-TGTCTTCGACCTGCTTCACTGTC
1 TCTTCAACCAGCTCCATC-ACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTC
* * ** * **
2464967 AACGCAGGAAGATAAAATCAGTTG
65 AATGTAGGAAGGCAAGATCTTTTG
* * * *
2464991 TCTTCAACCAACT-CTTCTAC-ACTCGAGAGAGGCAAGGCTT-TGTTTTCGATCTGCTTCGCTGT
1 TCTTCAACCAGCTCCATC-ACAAC-CGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGT
* * * *
2465053 TAACGTAGGAAGGCAAGAT-TTGCTA
64 CAATGTAGGAAGGCAAGATCTT-TTG
* ** *
2465078 TCTTCAACCAGCTCCA-CTGCAACCGATGGAGGCAAGGCTTTGT-TTTTCGATCTACTTCGCTGT
1 TCTTCAACCAGCTCCATC-ACAACCGAAAGAGGCAAGG-TTTGTGTTTTCGATCTGCTTCGCTGT
* * ** *
2465141 TAATGCAGGAAGGCAAGATCTGCTA
64 CAATGTAGGAAGGCAAGATCTTTTG
* * ** * * *
2465166 TCTTCAACTAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCA
1 TCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTCA
* *
2465231 ATGCAGGAAGACAAGATCTTTTG
66 ATGTAGGAAGGCAAGATCTTTTG
* * *
2465254 TCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCA
1 TCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTCA
*
2465319 ATGCAGGAAGGCAAGATCTTTTG
66 ATGTAGGAAGGCAAGATCTTTTG
2465342 TCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTCA
1 TCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTCA
2465407 ATGTAGGAAGGCAAGATCTTTTG
66 ATGTAGGAAGGCAAGATCTTTTG
*
2465430 TCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTCA
1 TCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTCA
2465495 ATGTAGGAAGGCAAGATCTTTTG
66 ATGTAGGAAGGCAAGATCTTTTG
* *
2465518 TCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCA
1 TCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTCA
*
2465583 ATGTAGGAAGGCAATATCTTTTG
66 ATGTAGGAAGGCAAGATCTTTTG
2465606 TCTTCA
1 TCTTCA
2465612 TTGATCTGTC
Statistics
Matches: 561, Mismatches: 49, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
85 3 0.01
86 29 0.05
87 68 0.12
88 458 0.82
89 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (88 bp):
TCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTTCGCTGTCA
ATGTAGGAAGGCAAGATCTTTTG
Found at i:2469952 original size:19 final size:20
Alignment explanation
Indices: 2469928--2469967 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
2469918 GTGAAAATCT
* *
2469928 AATGCATATG-ATGCAATGA
1 AATGCAGATGCATGAAATGA
2469947 AATGCAGATGCATGAAATGA
1 AATGCAGATGCATGAAATGA
2469967 A
1 A
2469968 TGCCTAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.23
Consensus pattern (20 bp):
AATGCAGATGCATGAAATGA
Found at i:2472131 original size:3 final size:3
Alignment explanation
Indices: 2472092--2472201 Score: 86
Period size: 3 Copynumber: 36.7 Consensus size: 3
2472082 ATGTATTAGT
* * *
2472092 ATA ATA GTA ATAA ATA AAA AGA A-A ATA A-A ACTA ATA ATA ATTA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA A-TA ATA
* **
2472138 ATA GTA ATA ATA ATA ATA ACC ATA ATA ATA ATA AGCTA ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA
2472184 AT- ATA ATA AT- ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
2472202 GAGCAAATAA
Statistics
Matches: 87, Mismatches: 10, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
2 10 0.11
3 66 0.76
4 8 0.09
5 3 0.03
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:2474382 original size:23 final size:21
Alignment explanation
Indices: 2474340--2474419 Score: 57
Period size: 19 Copynumber: 4.0 Consensus size: 21
2474330 ATATTAAAAA
* *
2474340 ATATATTTTAATTTATATTTT
1 ATATATTTTAAATTAAATTTT
2474361 ATATATTTTTATAATTAAA-TTT
1 ATATA-TTTTA-AATTAAATTTT
2474383 A-A-ATTTTAAA--AATATTTT
1 ATATATTTTAAATTAA-ATTTT
2474401 -TAT-TATTTAAATTAAATTT
1 ATATAT-TTTAAATTAAATTT
2474420 CAAGCCGATC
Statistics
Matches: 48, Mismatches: 2, Indels: 19
0.70 0.03 0.28
Matches are distributed among these distances:
16 2 0.04
17 1 0.02
18 7 0.15
19 11 0.23
20 5 0.10
21 8 0.17
22 9 0.19
23 5 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATATATTTTAAATTAAATTTT
Found at i:2476520 original size:6 final size:7
Alignment explanation
Indices: 2476502--2476526 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2476492 ATCATATTTA
2476502 CTTTTTT
1 CTTTTTT
2476509 CTTTTTT
1 CTTTTTT
2476516 CTTTTTT
1 CTTTTTT
2476523 CTTT
1 CTTT
2476527 ATATTTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
CTTTTTT
Found at i:2493578 original size:22 final size:22
Alignment explanation
Indices: 2493553--2493600 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
2493543 AATGTTGAGC
* *
2493553 GTTTCAAAGTTTAAGGTTTAGA
1 GTTTCAAAATTTAAAGTTTAGA
* *
2493575 GTTTTAAAATTTAAAGTTTAGG
1 GTTTCAAAATTTAAAGTTTAGA
2493597 GTTT
1 GTTT
2493601 AAGATGTAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (22 bp):
GTTTCAAAATTTAAAGTTTAGA
Found at i:2493601 original size:36 final size:35
Alignment explanation
Indices: 2493560--2493663 Score: 109
Period size: 36 Copynumber: 2.9 Consensus size: 35
2493550 AGCGTTTCAA
*
2493560 AGTTTAAGGTTTAGAGTTTTAAAATTTAAAGTTTAG
1 AGTTTAAGGTTTAGTGTTTTAAAATTTAAA-TTTAG
* * * * ** *
2493596 GGTTTAAGATGTAGTGTTTCATTATTTAAATTTTG
1 AGTTTAAGGTTTAGTGTTTTAAAATTTAAATTTAG
*
2493631 AGTTTAAAGTTTAGTGTTTTAAAATTTAGAATT
1 AGTTTAAGGTTTAGTGTTTTAAAATTTA-AATT
2493664 CAAAATTTCA
Statistics
Matches: 52, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
35 25 0.48
36 27 0.52
ACGTcount: A:0.33, C:0.01, G:0.18, T:0.48
Consensus pattern (35 bp):
AGTTTAAGGTTTAGTGTTTTAAAATTTAAATTTAG
Found at i:2498399 original size:20 final size:20
Alignment explanation
Indices: 2498363--2498409 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
2498353 GAATCGAATT
*
2498363 TATAAAT-AATTTTTTATAC
1 TATAAATAAATCTTTTATAC
2498382 TATAAATAAATCTTTTATAC
1 TATAAATAAATCTTTTATAC
2498402 -ATAAATAA
1 TATAAATAA
2498410 TGAAAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (20 bp):
TATAAATAAATCTTTTATAC
Found at i:2504102 original size:32 final size:32
Alignment explanation
Indices: 2504025--2504102 Score: 79
Period size: 32 Copynumber: 2.5 Consensus size: 32
2504015 AAATATGTTG
* *
2504025 TTAGT-CTCTGTA-TTTTGATAGAATTTGAGAT
1 TTAGTCCT-TGTACTTTTGATAGAATATGAAAT
* * * *
2504056 TTAATCTTTATACTTTTTATAGAATATGAAAT
1 TTAGTCCTTGTACTTTTGATAGAATATGAAAT
2504088 TTAGTCCTTGTACTT
1 TTAGTCCTTGTACTT
2504103 AAAACGTTGA
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
31 7 0.19
32 29 0.81
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (32 bp):
TTAGTCCTTGTACTTTTGATAGAATATGAAAT
Found at i:2510578 original size:11 final size:11
Alignment explanation
Indices: 2510562--2510586 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2510552 ACATTTATGA
2510562 TTTTCTCTTTT
1 TTTTCTCTTTT
2510573 TTTTCTCTTTT
1 TTTTCTCTTTT
2510584 TTT
1 TTT
2510587 GTAATAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTCTCTTTT
Found at i:2515831 original size:75 final size:75
Alignment explanation
Indices: 2515721--2515970 Score: 430
Period size: 75 Copynumber: 3.3 Consensus size: 75
2515711 CATTGTTGTA
* *
2515721 CTCATTGTTACCATTGTAATAGTTGTTGTTG-TTCTGGTTTTCCTTAGTACTCCATCCTTTCTCA
1 CTCATTGTTACCATTGTAATAGTTGTTG-CGATTCTGGTTTTCCTTAGTACTCCACCCTTTCTCA
*
2515785 GTGAACATGGC
65 GTGAACAAGGC
*
2515796 CTCATTGTTACCGTTGTAATAGTTGTTGCGATTCTGGTTTTCCTTAGTACTCCACCCTTTCTCAG
1 CTCATTGTTACCATTGTAATAGTTGTTGCGATTCTGGTTTTCCTTAGTACTCCACCCTTTCTCAG
2515861 TGAACAAGGC
66 TGAACAAGGC
* *
2515871 CTCATTGTTACCATTGTAATAGTTGTTGCTATTCTGGTTTTCCTTGGTACTCCACCCTTTCTCAG
1 CTCATTGTTACCATTGTAATAGTTGTTGCGATTCTGGTTTTCCTTAGTACTCCACCCTTTCTCAG
2515936 TGAACAAGGC
66 TGAACAAGGC
2515946 CTCATTGTTACCATTGTAATAGTTG
1 CTCATTGTTACCATTGTAATAGTTG
2515971 ACATTGTAGT
Statistics
Matches: 167, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
74 1 0.01
75 166 0.99
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.41
Consensus pattern (75 bp):
CTCATTGTTACCATTGTAATAGTTGTTGCGATTCTGGTTTTCCTTAGTACTCCACCCTTTCTCAG
TGAACAAGGC
Found at i:2521670 original size:26 final size:24
Alignment explanation
Indices: 2521640--2521689 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
2521630 AAATAAAAAA
*
2521640 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
2521666 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
2521690 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:2524492 original size:3 final size:3
Alignment explanation
Indices: 2524484--2524510 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2524474 GAGAGAGATG
2524484 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
2524511 AAGGTCTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:2535960 original size:18 final size:18
Alignment explanation
Indices: 2535937--2535973 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
2535927 AAATATAAAT
2535937 ATTTGATTTAATTTTTTA
1 ATTTGATTTAATTTTTTA
2535955 ATTTGATTTAATTTTTTA
1 ATTTGATTTAATTTTTTA
2535973 A
1 A
2535974 AAATTATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (18 bp):
ATTTGATTTAATTTTTTA
Found at i:2535964 original size:10 final size:10
Alignment explanation
Indices: 2535937--2535968 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
2535927 AAATATAAAT
2535937 ATTTGATTTA
1 ATTTGATTTA
2535947 ATTT--TTTA
1 ATTTGATTTA
2535955 ATTTGATTTA
1 ATTTGATTTA
2535965 ATTT
1 ATTT
2535969 TTTAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (10 bp):
ATTTGATTTA
Found at i:2543398 original size:37 final size:37
Alignment explanation
Indices: 2543337--2543482 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
2543327 TACGTATGAT
*
2543337 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
* *
2543372 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
2543409 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
2543446 CACTTATCACTTTGTCTCTAGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
2543483 TAAGCTATCA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 4 0.04
37 90 0.87
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:2543540 original size:52 final size:52
Alignment explanation
Indices: 2543446--2543713 Score: 379
Period size: 52 Copynumber: 5.2 Consensus size: 52
2543436 TAAGTGTAGC
* * * *
2543446 CACTTATCACTTTGTCTCTAGATCAGATAAGTGTAG-CTAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
2543498 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
2543550 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
2543602 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
2543648 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
2543700 CACTTTGTCACTTG
1 CACTTT-TCACTTG
2543714 ATCAGAAGTA
Statistics
Matches: 195, Mismatches: 13, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
46 43 0.22
49 1 0.01
51 23 0.12
52 122 0.63
53 6 0.03
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:2543619 original size:46 final size:46
Alignment explanation
Indices: 2543547--2543719 Score: 231
Period size: 46 Copynumber: 3.7 Consensus size: 46
2543537 AGCTATCACT
*
2543547 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
2543592 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* **
2543638 TATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
2543690 TACCACTTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCACTTTGTCACTTGATCAGA
2543720 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
45 12 0.11
46 59 0.52
48 1 0.01
50 1 0.01
52 40 0.35
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:2543637 original size:98 final size:98
Alignment explanation
Indices: 2543446--2543719 Score: 388
Period size: 98 Copynumber: 2.7 Consensus size: 98
2543436 TAAGTGTAGC
* * * *
2543446 CACTTATCACTTTGTCTCTAGATCAGATAAGTGTAG-CTAAGCTATCACTTATCACTTTTCACTT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCAC---T---TT
*
2543510 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
59 GTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
2543550 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACTT
*
2543615 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
2543648 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACTT
2543713 GATCAGA
66 GATCAGA
2543720 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 10, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
98 108 0.68
101 1 0.01
103 23 0.14
104 27 0.17
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:2550003 original size:21 final size:21
Alignment explanation
Indices: 2549979--2550031 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
2549969 TATGGACTCT
2549979 TTTTATTATATTATTT-ATAAA
1 TTTTATTA-ATTATTTAATAAA
* *
2550000 TTTTTTTAATTATTTAATATA
1 TTTTATTAATTATTTAATAAA
*
2550021 TTTTAGTAATT
1 TTTTATTAATT
2550032 TTTCTATGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTATTAATTATTTAATAAA
Found at i:2552557 original size:16 final size:16
Alignment explanation
Indices: 2552532--2552563 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2552522 TTTTTATTGC
2552532 TAAAAACTTAAAATTT
1 TAAAAACTTAAAATTT
*
2552548 TAAAACCTTAAAATTT
1 TAAAAACTTAAAATTT
2552564 CGACAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAAAACTTAAAATTT
Found at i:2563432 original size:29 final size:30
Alignment explanation
Indices: 2563372--2563432 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
2563362 TCAACTCTTT
* *
2563372 TTTTTTAAAAGGCTGATAGTCAAATTTGAA
1 TTTTTTAAAAGACTGATAGTCAAAATTGAA
*
2563402 TTTTTTAAAAGATTGA-AGATCAAAATT-AA
1 TTTTTTAAAAGACTGATAG-TCAAAATTGAA
2563431 TT
1 TT
2563433 AAAAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.41, C:0.05, G:0.13, T:0.41
Consensus pattern (30 bp):
TTTTTTAAAAGACTGATAGTCAAAATTGAA
Found at i:2573544 original size:28 final size:28
Alignment explanation
Indices: 2573504--2573563 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
2573494 GTCATTATCA
2573504 ACCCCATAAGTTATAAAACCCTTCCTAT
1 ACCCCATAAGTTATAAAACCCTTCCTAT
* * **
2573532 ACCCCATAAGTTATTAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACCCTTCCTAT
2573560 ACCC
1 ACCC
2573564 ATTAATATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACCCTTCCTAT
Found at i:2585543 original size:3 final size:3
Alignment explanation
Indices: 2585499--2585525 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2585489 ATTCCAAATT
2585499 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
2585526 TAGTAGCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:2587336 original size:17 final size:17
Alignment explanation
Indices: 2587314--2587347 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2587304 AACCGCTTCA
2587314 TTTGAACAAATCACATT
1 TTTGAACAAATCACATT
2587331 TTTGAACAAATCACATT
1 TTTGAACAAATCACATT
2587348 AATAAAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
TTTGAACAAATCACATT
Found at i:2589152 original size:13 final size:13
Alignment explanation
Indices: 2589134--2589161 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2589124 ATTTAAATCT
2589134 TAATGCAAAACAA
1 TAATGCAAAACAA
2589147 TAATGCAAAACAA
1 TAATGCAAAACAA
2589160 TA
1 TA
2589162 TTCGTTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.14, G:0.07, T:0.18
Consensus pattern (13 bp):
TAATGCAAAACAA
Found at i:2591611 original size:11 final size:10
Alignment explanation
Indices: 2591595--2591636 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
2591585 TTTTTCTCAC
2591595 AAAATTAAATA
1 AAAATTAAA-A
2591606 AAAATTATAAA
1 AAAATTA-AAA
*
2591617 AAAATTGAAA
1 AAAATTAAAA
2591627 AAAATTAAAA
1 AAAATTAAAA
2591637 TTAGTATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (10 bp):
AAAATTAAAA
Found at i:2591617 original size:9 final size:9
Alignment explanation
Indices: 2591603--2591727 Score: 55
Period size: 9 Copynumber: 13.7 Consensus size: 9
2591593 ACAAAATTAA
2591603 ATAAAAATT
1 ATAAAAATT
2591612 ATAAAAAAATT
1 AT--AAAAATT
2591623 GA-AAAAA--
1 -ATAAAAATT
*
2591630 ATTAAAATT
1 ATAAAAATT
*
2591639 AGTATAAACTT
1 A-TA-AAAATT
*
2591650 ATTAAAATT
1 ATAAAAATT
*
2591659 ATAAAAAAT
1 ATAAAAATT
*
2591668 ATAAATATT
1 ATAAAAATT
2591677 AT-AAAATCT
1 ATAAAAAT-T
*
2591686 A-ATAAATCT
1 ATAAAAAT-T
*
2591695 A-ATAAATT
1 ATAAAAATT
*
2591703 GTAAAAATAT
1 ATAAAAAT-T
*
2591713 ATAAAAATA
1 ATAAAAATT
2591722 ATAAAA
1 ATAAAA
2591728 CTTGTTTAAA
Statistics
Matches: 89, Mismatches: 15, Indels: 24
0.70 0.12 0.19
Matches are distributed among these distances:
6 1 0.01
7 4 0.04
8 5 0.06
9 55 0.62
10 10 0.11
11 13 0.15
12 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (9 bp):
ATAAAAATT
Found at i:2591692 original size:19 final size:19
Alignment explanation
Indices: 2591668--2591718 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 19
2591658 TATAAAAAAT
2591668 ATAAATATTATAAAATCTA
1 ATAAATATTATAAAATCTA
* * * *
2591687 ATAAATCTAATAAATTGTA
1 ATAAATATTATAAAATCTA
2591706 A-AAATA-TATAAAA
1 ATAAATATTATAAAA
2591719 ATAATAAAAC
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
17 5 0.20
18 4 0.16
19 16 0.64
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (19 bp):
ATAAATATTATAAAATCTA
Found at i:2591815 original size:19 final size:19
Alignment explanation
Indices: 2591791--2591836 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
2591781 GTAAAAAAAT
* *
2591791 TATAAAAATATTAAATTTA
1 TATAAAAATATAAAAATTA
**
2591810 TATAAATTTATAAAAATTA
1 TATAAAAATATAAAAATTA
2591829 TATAAAAA
1 TATAAAAA
2591837 AATCATAAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TATAAAAATATAAAAATTA
Found at i:2591835 original size:10 final size:10
Alignment explanation
Indices: 2591786--2591835 Score: 54
Period size: 9 Copynumber: 5.4 Consensus size: 10
2591776 ATATTGTAAA
2591786 AAAATTATA-
1 AAAATTATAT
2591795 AAAA-TAT-T
1 AAAATTATAT
*
2591803 AAATTTATAT
1 AAAATTATAT
*
2591813 AAATTTATA-
1 AAAATTATAT
2591822 AAAATTATAT
1 AAAATTATAT
2591832 AAAA
1 AAAA
2591836 AAATCATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
8 6 0.17
9 15 0.43
10 14 0.40
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTATAT
Found at i:2591835 original size:11 final size:10
Alignment explanation
Indices: 2591803--2591836 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
2591793 TAAAAATATT
*
2591803 AAATTTATAT
1 AAATTTATAA
2591813 AAATTTATAA
1 AAATTTATAA
2591823 AAATTATATAA
1 AAATT-TATAA
2591834 AAA
1 AAA
2591837 AATCATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATTTATAA
Found at i:2592016 original size:32 final size:32
Alignment explanation
Indices: 2591949--2592020 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
2591939 AATTTTTTAT
*
2591949 TTTTTTAATATTTTTATCAAATCAAAATTAAA
1 TTTTTAAATATTTTTATCAAATCAAAATTAAA
* ** *
2591981 TTTTGTAAATATTTTTAT-ATATCTTAATTAGA
1 TTTT-TAAATATTTTTATCAAATCAAAATTAAA
2592013 TTTTTAAA
1 TTTTTAAA
2592021 CTTCTATAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.12
32 18 0.53
33 12 0.35
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (32 bp):
TTTTTAAATATTTTTATCAAATCAAAATTAAA
Done.