Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 64 of 344
Found at i:20694400 original size:17 final size:16
Alignment explanation
Indices: 20694357--20694401 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
20694347 TTCTCCCTAC
*
20694357 TTTTTTTC-TTTCGGG
1 TTTTTTTCATTTGGGG
*
20694372 TTTTTGTCATTTGGGG
1 TTTTTTTCATTTGGGG
20694388 TTTCTTTTCATTTG
1 TTT-TTTTCATTTG
20694402 TTTCTGAAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 7 0.28
16 9 0.36
17 9 0.36
ACGTcount: A:0.04, C:0.11, G:0.20, T:0.64
Consensus pattern (16 bp):
TTTTTTTCATTTGGGG
Found at i:20698681 original size:34 final size:34
Alignment explanation
Indices: 20698638--20698704 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
20698628 CCGAACCCTA
20698638 AGTTCTTTTTCTTTTCTTCTTATTTTGTTATTTC
1 AGTTCTTTTTCTTTTCTTCTTATTTTGTTATTTC
20698672 AGTTCTTTTTCTTTTCTTCTTATTTTGTTATTT
1 AGTTCTTTTTCTTTTCTTCTTATTTTGTTATTT
20698705 TGGCAATGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.09, C:0.13, G:0.06, T:0.72
Consensus pattern (34 bp):
AGTTCTTTTTCTTTTCTTCTTATTTTGTTATTTC
Found at i:20701269 original size:22 final size:22
Alignment explanation
Indices: 20701244--20701285 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
20701234 AATTATTTAA
*
20701244 ATTCAGCTCTGTAGCGACTGAG
1 ATTCAGCTCTGTAACGACTGAG
20701266 ATTCAGCTCTGTAACGACTG
1 ATTCAGCTCTGTAACGACTG
20701286 TAGGAGGCGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (22 bp):
ATTCAGCTCTGTAACGACTGAG
Found at i:20705246 original size:31 final size:31
Alignment explanation
Indices: 20705210--20705285 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
20705200 ACGTTATTTC
*
20705210 TTTTCTTTTTCATTTTC-TTTCCTTTCTT-TAT
1 TTTTCTTTTTCATTTTCGTTT--TTTCTTCTAA
20705241 TTTTC-TTTTCACTTTTCGTTTTTTCTTCTAA
1 TTTTCTTTTTCA-TTTTCGTTTTTTCTTCTAA
20705272 TTTTCTTTTTCATT
1 TTTTCTTTTTCATT
20705286 ATTGACGTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
30 12 0.30
31 19 0.47
32 9 0.22
ACGTcount: A:0.08, C:0.18, G:0.01, T:0.72
Consensus pattern (31 bp):
TTTTCTTTTTCATTTTCGTTTTTTCTTCTAA
Found at i:20710311 original size:30 final size:30
Alignment explanation
Indices: 20710271--20710327 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
20710261 GCTGTATGTT
20710271 AGCTCAATTAAACATTAAATTGAGTTTTCA
1 AGCTCAATTAAACATTAAATTGAGTTTTCA
*
20710301 AGCTCGATTAAACATTAAATTGAGTTT
1 AGCTCAATTAAACATTAAATTGAGTTT
20710328 GCATGACTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (30 bp):
AGCTCAATTAAACATTAAATTGAGTTTTCA
Found at i:20722814 original size:18 final size:18
Alignment explanation
Indices: 20722791--20722828 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
20722781 CACCCATCCT
20722791 TAGCTAAATCCTCCAACC
1 TAGCTAAATCCTCCAACC
20722809 TAGCTAAATCCTCCAACC
1 TAGCTAAATCCTCCAACC
20722827 TA
1 TA
20722829 CCTTAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.37, G:0.05, T:0.24
Consensus pattern (18 bp):
TAGCTAAATCCTCCAACC
Found at i:20729969 original size:14 final size:14
Alignment explanation
Indices: 20729950--20729976 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20729940 ATGCTTATCG
20729950 AATAAAAAGATTTA
1 AATAAAAAGATTTA
20729964 AATAAAAAGATTT
1 AATAAAAAGATTT
20729977 TTTTGTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (14 bp):
AATAAAAAGATTTA
Found at i:20730806 original size:23 final size:22
Alignment explanation
Indices: 20730780--20730823 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
20730770 AATATTTTTT
*
20730780 ATTATTAAATTTAAATATTAAAA
1 ATTATTAAATGTAAA-ATTAAAA
*
20730803 ATTATTGAATGTAAAATTAAA
1 ATTATTAAATGTAAAATTAAA
20730824 GTATTTATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (22 bp):
ATTATTAAATGTAAAATTAAAA
Found at i:20739269 original size:29 final size:30
Alignment explanation
Indices: 20739226--20739282 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
20739216 GAATTGGATC
20739226 AAATCAAAATTTCATGTATAAAATTGCACA
1 AAATCAAAATTTCATGTATAAAATTGCACA
*
20739256 AAATCAAAA-TTCATGTATACAATTGCA
1 AAATCAAAATTTCATGTATAAAATTGCA
20739283 TATTAAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (30 bp):
AAATCAAAATTTCATGTATAAAATTGCACA
Found at i:20739829 original size:14 final size:14
Alignment explanation
Indices: 20739812--20739841 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
20739802 ACTATTACAT
20739812 AGCATATATTAACA
1 AGCATATATTAACA
20739826 AGCATATATTAACA
1 AGCATATATTAACA
20739840 AG
1 AG
20739842 ACCGTAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (14 bp):
AGCATATATTAACA
Found at i:20744693 original size:13 final size:12
Alignment explanation
Indices: 20744660--20744693 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
20744650 TGTTTTGGAC
*
20744660 TAATTGAATAAA
1 TAATTGATTAAA
20744672 TAATTGATTAAA
1 TAATTGATTAAA
20744684 TAAGTTGATT
1 TAA-TTGATT
20744694 TTTATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (12 bp):
TAATTGATTAAA
Found at i:20745051 original size:26 final size:24
Alignment explanation
Indices: 20745012--20745075 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
20745002 AGACTCACCA
*
20745012 CAGCTCGTATGAGCTTAGCAATATAT
1 CAGCTCGTAAGAGCTTA-CAAT-TAT
***
20745038 CAGCTCGTAAGAGCTTATTGTTAT
1 CAGCTCGTAAGAGCTTACAATTAT
20745062 CAGCTCGTAAGAGC
1 CAGCTCGTAAGAGC
20745076 GTACTGTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 17 0.50
25 1 0.03
26 16 0.47
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACAATTAT
Found at i:20745067 original size:24 final size:24
Alignment explanation
Indices: 20745035--20745103 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 24
20745025 CTTAGCAATA
20745035 TATCAGCTCGTAAGAGCTTATTGT
1 TATCAGCTCGTAAGAGCTTATTGT
* *
20745059 TATCAGCTCGTAAGAGCGTACTGT
1 TATCAGCTCGTAAGAGCTTATTGT
* * **
20745083 TTTCAACTCGTCGGAGCTTAT
1 TATCAGCTCGTAAGAGCTTAT
20745104 CATTTCAGCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (24 bp):
TATCAGCTCGTAAGAGCTTATTGT
Found at i:20745139 original size:25 final size:25
Alignment explanation
Indices: 20745108--20745172 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
20745098 GCTTATCATT
*
20745108 TCAGCTCAATAGAGCTTACTG-TCCA
1 TCAGCTCAAAAGAGCTTACTGAT-CA
**
20745133 TCAGCTCAGGAGAAGCTTACTGATCA
1 TCAGCTCAAAAG-AGCTTACTGATCA
20745159 T-AGCTCAAAAGAGC
1 TCAGCTCAAAAGAGC
20745173 AGAAATGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
24 3 0.09
25 18 0.53
26 12 0.35
27 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (25 bp):
TCAGCTCAAAAGAGCTTACTGATCA
Found at i:20757325 original size:70 final size:70
Alignment explanation
Indices: 20757212--20757347 Score: 218
Period size: 70 Copynumber: 1.9 Consensus size: 70
20757202 TAGGTAAAGC
* * * *
20757212 ACTTAGTGTGCGGAATTATAATAGCTTTGGCTATGCGATGGCACTTAGTGTGCGAAACATCGAGT
1 ACTTAGTGTGCAGAATTATAAAAGCTTCGGCTATGCGATGGCACTTAGTGTACGAAACATCGAGT
20757277 AAGGA
66 AAGGA
* *
20757282 ACTTAGTGTGTAGAATTATAAAAGCTTCGGCTATTCGATGGCACTTAGTGTACGAAACATCGAGT
1 ACTTAGTGTGCAGAATTATAAAAGCTTCGGCTATGCGATGGCACTTAGTGTACGAAACATCGAGT
20757347 A
66 A
20757348 TTTGACAGTG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (70 bp):
ACTTAGTGTGCAGAATTATAAAAGCTTCGGCTATGCGATGGCACTTAGTGTACGAAACATCGAGT
AAGGA
Found at i:20763693 original size:73 final size:73
Alignment explanation
Indices: 20763553--20763694 Score: 239
Period size: 73 Copynumber: 1.9 Consensus size: 73
20763543 ATATTAATTC
* *
20763553 ACATACTGTAAACACCAAAAATAATATTAAAATATTTTTACTTGAATTAGTGGTCCTAAAACCAC
1 ACATACTGTAAACACCAAAAATAATATTAAAATATTTTTACTCGAATTAGTGGTCCCAAAACCAC
20763618 TGTTTCGA
66 TGTTTCGA
* * *
20763626 ACATACTGTAAACACCAAAAATAATATTAAAATATTTTTACTCGAATTTGTGGTCCCGAAACTAC
1 ACATACTGTAAACACCAAAAATAATATTAAAATATTTTTACTCGAATTAGTGGTCCCAAAACCAC
20763691 TGTT
66 TGTT
20763695 CCAACTAGGG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (73 bp):
ACATACTGTAAACACCAAAAATAATATTAAAATATTTTTACTCGAATTAGTGGTCCCAAAACCAC
TGTTTCGA
Found at i:20778272 original size:5 final size:5
Alignment explanation
Indices: 20778264--20778301 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
20778254 ATGATATGTG
* *
20778264 TTGTA TTGTG TTGTA TTGTG TTGTA TTGTA TTGTA TTG
1 TTGTA TTGTA TTGTA TTGTA TTGTA TTGTA TTGTA TTG
20778302 AATGCTATCG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (5 bp):
TTGTA
Found at i:20778275 original size:10 final size:10
Alignment explanation
Indices: 20778260--20778301 Score: 75
Period size: 10 Copynumber: 4.2 Consensus size: 10
20778250 ATTTATGATA
20778260 TGTGTTGTAT
1 TGTGTTGTAT
20778270 TGTGTTGTAT
1 TGTGTTGTAT
20778280 TGTGTTGTAT
1 TGTGTTGTAT
*
20778290 TGTATTGTAT
1 TGTGTTGTAT
20778300 TG
1 TG
20778302 AATGCTATCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.12, C:0.00, G:0.29, T:0.60
Consensus pattern (10 bp):
TGTGTTGTAT
Found at i:20797114 original size:26 final size:26
Alignment explanation
Indices: 20797085--20797136 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
20797075 AACACACACA
20797085 GAGTTTAGAGAAATAACTTATGGTTT
1 GAGTTTAGAGAAATAACTTATGGTTT
20797111 GAGTTTAGAGAAATAACTTATGGTTT
1 GAGTTTAGAGAAATAACTTATGGTTT
20797137 CTGCTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (26 bp):
GAGTTTAGAGAAATAACTTATGGTTT
Found at i:20798316 original size:47 final size:47
Alignment explanation
Indices: 20798234--20798424 Score: 220
Period size: 47 Copynumber: 4.0 Consensus size: 47
20798224 TAAAGATGAG
* * * * *
20798234 ATTGTTCGCATGATTTATAGCCATTTCTACTGAAGTTTCACTGTGAT
1 ATTGTTAGCACGATTTATAGCCATTTCTCCAGAAGTTGCACTGTGAT
*
20798281 ATAGTTAGCACGATTTATAGCCATTTCTCCAGAAGTTGCACTGTGAT
1 ATTGTTAGCACGATTTATAGCCATTTCTCCAGAAGTTGCACTGTGAT
* ** * *
20798328 ATTGTTAGCATGATTTATAGCTGTTTTTCCAGAAGTTGCACTGTAAT
1 ATTGTTAGCACGATTTATAGCCATTTCTCCAGAAGTTGCACTGTGAT
* * * * * *
20798375 ATTTTTCGCACTATTTATAGCCATTTCTCCCAAAAATTACACTGTGAT
1 ATTGTTAGCACGATTTATAGCCATTTCT-CCAGAAGTTGCACTGTGAT
20798423 AT
1 AT
20798425 GGGTTCTCTT
Statistics
Matches: 120, Mismatches: 23, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
47 103 0.86
48 17 0.14
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (47 bp):
ATTGTTAGCACGATTTATAGCCATTTCTCCAGAAGTTGCACTGTGAT
Found at i:20799452 original size:29 final size:30
Alignment explanation
Indices: 20799409--20799467 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
20799399 TAATTGGGTC
*
20799409 AAATCAAAATTTCATGTATAAAATTGCACA
1 AAATCAAAAGTTCATGTATAAAATTGCACA
*
20799439 AAATC-AAAGTTCATGTATACAATTGCACA
1 AAATCAAAAGTTCATGTATAAAATTGCACA
20799468 TTAAATATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.29
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTATAAAATTGCACA
Found at i:20800463 original size:16 final size:16
Alignment explanation
Indices: 20800430--20800499 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
20800420 GTTTGGTTCA
* *
20800430 CTGTAATGGAATAAAG
1 CTGTAATTGAATAGAG
*
20800446 CTGAAATTGAATAGAG
1 CTGTAATTGAATAGAG
*
20800462 CTGTAA-TGAATGGAG
1 CTGTAATTGAATAGAG
*
20800477 CTGTAATGGAATAGAG
1 CTGTAATTGAATAGAG
20800493 CTGTAAT
1 CTGTAAT
20800500 CAGTAATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
15 14 0.30
16 32 0.70
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (16 bp):
CTGTAATTGAATAGAG
Found at i:20800489 original size:31 final size:32
Alignment explanation
Indices: 20800430--20800499 Score: 97
Period size: 31 Copynumber: 2.2 Consensus size: 32
20800420 GTTTGGTTCA
*
20800430 CTGTAATGGAATAAAGCTGAAATTGAATAGAG
1 CTGTAATGGAATAAAGCTGAAATGGAATAGAG
** *
20800462 CTGTAAT-GAATGGAGCTGTAATGGAATAGAG
1 CTGTAATGGAATAAAGCTGAAATGGAATAGAG
20800493 CTGTAAT
1 CTGTAAT
20800500 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 27 0.79
32 7 0.21
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (32 bp):
CTGTAATGGAATAAAGCTGAAATGGAATAGAG
Found at i:20800536 original size:46 final size:44
Alignment explanation
Indices: 20800481--20800574 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
20800471 ATGGAGCTGT
*
20800481 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAAT-AGT-ATTCAACTATTTGGTTGAATGG
***
20800527 AATGGAATAGAGCTGTAATAGTATTCTTGTATTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATAGTATTCAACTATTTGGTTGAATGG
20800571 AATG
1 AATG
20800575 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 22 0.50
45 3 0.07
46 19 0.43
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAGCTGTAATAGTATTCAACTATTTGGTTGAATGG
Found at i:20800745 original size:58 final size:58
Alignment explanation
Indices: 20800683--20800804 Score: 156
Period size: 58 Copynumber: 2.1 Consensus size: 58
20800673 TTTGAAAGAT
* * * *
20800683 TATTATTAAAAATAATTTGATAAATATAATAAATAATTTAATCATATT-TTAACATAAC
1 TATTATTAAAAACAATTTAATAAA-ATAATAAATAATTTAATAAAATTCTTAACATAAC
* * * *
20800741 TATTATTAAATACAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATAAT
1 TATTATTAAAAACAATTTAATAAAATAATAAATAATTTAATAAAATTCTTAACATAAC
20800799 TATTAT
1 TATTAT
20800805 ATGAATTAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 20 0.36
58 35 0.64
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (58 bp):
TATTATTAAAAACAATTTAATAAAATAATAAATAATTTAATAAAATTCTTAACATAAC
Found at i:20802632 original size:27 final size:28
Alignment explanation
Indices: 20802587--20802643 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
20802577 TAATTATTTT
*
20802587 TTTATAGTATAATAGCTAGAACTAATTA
1 TTTATAGTATAATAACTAGAACTAATTA
*
20802615 TTTATA-TTTAATAACTAGAACTAATTA
1 TTTATAGTATAATAACTAGAACTAATTA
20802642 TT
1 TT
20802644 CCATTCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (28 bp):
TTTATAGTATAATAACTAGAACTAATTA
Found at i:20802761 original size:15 final size:17
Alignment explanation
Indices: 20802741--20802772 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
20802731 TCATTTCATT
20802741 TATAT-AAT-CATAAAA
1 TATATAAATGCATAAAA
20802756 TATATAAATGCATAAAA
1 TATATAAATGCATAAAA
20802773 AGATTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 3 0.20
17 7 0.47
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (17 bp):
TATATAAATGCATAAAA
Found at i:20802924 original size:17 final size:17
Alignment explanation
Indices: 20802902--20802940 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
20802892 AATTTAGATG
*
20802902 TAAAATATACTA-AAATA
1 TAAAATAAACTAGAAA-A
20802919 TAAAATAAACTAGAAAA
1 TAAAATAAACTAGAAAA
20802936 TAAAA
1 TAAAA
20802941 ATGGAGTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAATAAACTAGAAAA
Found at i:20803032 original size:19 final size:20
Alignment explanation
Indices: 20803010--20803051 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
20803000 ATAAAAAAAG
*
20803010 ATATTAAATATAT-ATAAAT
1 ATATTAAATAAATAATAAAT
*
20803029 ATA-TAGATAAATAATAAAT
1 ATATTAAATAAATAATAAAT
20803048 ATAT
1 ATAT
20803052 ATATATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
ATATTAAATAAATAATAAAT
Found at i:20803156 original size:14 final size:14
Alignment explanation
Indices: 20803137--20803178 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
20803127 TCTACCATTA
20803137 TTATATTAAATATG
1 TTATATTAAATATG
*
20803151 TTATATTTATATAT-
1 TTATA-TTAAATATG
*
20803165 TTATATTAAGTATG
1 TTATATTAAATATG
20803179 GCATTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 6 0.26
14 10 0.43
15 7 0.30
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
TTATATTAAATATG
Found at i:20803240 original size:13 final size:13
Alignment explanation
Indices: 20803224--20803251 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
20803214 ATTCAAGTCT
20803224 ATAATTCATATTA
1 ATAATTCATATTA
20803237 ATAATTCATATTA
1 ATAATTCATATTA
20803250 AT
1 AT
20803252 TATGAATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (13 bp):
ATAATTCATATTA
Found at i:20803442 original size:16 final size:16
Alignment explanation
Indices: 20803421--20803471 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
20803411 TTTCTAGTAT
* *
20803421 TTTATTTCCTAGCGTG
1 TTTATTTACTAGCGTA
20803437 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
20803453 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
20803469 TTT
1 TTT
20803472 GCTCTTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:20807356 original size:21 final size:24
Alignment explanation
Indices: 20807330--20807375 Score: 71
Period size: 21 Copynumber: 2.0 Consensus size: 24
20807320 GGGTTCTTTA
20807330 TCATTT-TCATT-TTTTA-ATGAT
1 TCATTTCTCATTCTTTTATATGAT
20807351 TCATTTCTCATTCTTTTATATGAT
1 TCATTTCTCATTCTTTTATATGAT
20807375 T
1 T
20807376 TTTATGAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.27
22 5 0.23
23 5 0.23
24 6 0.27
ACGTcount: A:0.22, C:0.13, G:0.04, T:0.61
Consensus pattern (24 bp):
TCATTTCTCATTCTTTTATATGAT
Found at i:20824498 original size:15 final size:15
Alignment explanation
Indices: 20824478--20824510 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
20824468 TTTTGTGTTG
*
20824478 TTTGTATTTCAGTTA
1 TTTGTATTTCAATTA
20824493 TTTGTATTTCAATTA
1 TTTGTATTTCAATTA
20824508 TTT
1 TTT
20824511 AAATTATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.09, T:0.64
Consensus pattern (15 bp):
TTTGTATTTCAATTA
Found at i:20825538 original size:7 final size:7
Alignment explanation
Indices: 20825526--20825558 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
20825516 TTAATTCAAA
20825526 AGGGTTT
1 AGGGTTT
20825533 AGGGTTT
1 AGGGTTT
20825540 AGGGTTT
1 AGGGTTT
20825547 AGGGTTT
1 AGGGTTT
20825554 AGGGT
1 AGGGT
20825559 ATATCGCCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (7 bp):
AGGGTTT
Found at i:20835538 original size:40 final size:40
Alignment explanation
Indices: 20835461--20835597 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 40
20835451 ACCCAAGTAT
20835461 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
20835500 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * * *
20835540 CTTCGGGACATAGCCCGAATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
20835580 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
20835598 TTATCATCCG
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.15
40 66 0.82
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:20856504 original size:31 final size:31
Alignment explanation
Indices: 20856466--20856527 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
20856456 ACACCATACA
20856466 TAGCTTTGAAACATTACATCATAATCATTTT
1 TAGCTTTGAAACATTACATCATAATCATTTT
20856497 TAGCTTTGAAACATTACATCATAATCATTTT
1 TAGCTTTGAAACATTACATCATAATCATTTT
20856528 CCTAATACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42
Consensus pattern (31 bp):
TAGCTTTGAAACATTACATCATAATCATTTT
Found at i:20863331 original size:15 final size:15
Alignment explanation
Indices: 20863276--20863331 Score: 58
Period size: 16 Copynumber: 3.6 Consensus size: 15
20863266 TATATTTATT
20863276 TAAATTTTAATAATAA
1 TAAATTTTAATAAT-A
* * * *
20863292 TTATTTTTTAGAATA
1 TAAATTTTAATAATA
20863307 TAAATTTTTAATAATA
1 TAAA-TTTTAATAATA
20863323 TAAATTTTA
1 TAAATTTTA
20863332 TATTATAATA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
TAAATTTTAATAATA
Found at i:20863532 original size:16 final size:18
Alignment explanation
Indices: 20863506--20863541 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
20863496 ATTATTAAAT
20863506 TTGAATATTAAAATT-TA
1 TTGAATATTAAAATTATA
20863523 TTGAAT-TTAAAATTATA
1 TTGAATATTAAAATTATA
20863540 TT
1 TT
20863542 ATTTATGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (18 bp):
TTGAATATTAAAATTATA
Found at i:20863553 original size:24 final size:24
Alignment explanation
Indices: 20863518--20863564 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
20863508 GAATATTAAA
20863518 ATTTATTGAATTTAAAATTATATT
1 ATTTATTGAATTTAAAATTATATT
**
20863542 ATTTA-TGCAATTTTGAATTATAT
1 ATTTATTG-AATTTAAAATTATAT
20863565 AGTTTAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.53
Consensus pattern (24 bp):
ATTTATTGAATTTAAAATTATATT
Found at i:20864092 original size:24 final size:25
Alignment explanation
Indices: 20864049--20864107 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
20864039 GTTGATAAAG
* *
20864049 AAAATAAAAAAACAAATATAA-AAT
1 AAAATAAAATAACAAATATAATAAC
* * *
20864073 AAAATAAAATAAGAATTATAATTAC
1 AAAATAAAATAACAAATATAATAAC
20864098 AAAATAAAAT
1 AAAATAAAAT
20864108 TAAAGAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 18 0.62
25 11 0.38
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (25 bp):
AAAATAAAATAACAAATATAATAAC
Found at i:20876132 original size:21 final size:21
Alignment explanation
Indices: 20876108--20876170 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
20876098 TAAGATTTTA
20876108 TATTAATATTAATCTAATATT
1 TATTAATATTAATCTAATATT
* **
20876129 TATTAATATTTATCTTAATAAA
1 TATTAATATTAATC-TAATATT
*
20876151 TATT-ATATTAATTTAATATT
1 TATTAATATTAATCTAATATT
20876171 AAAGTGATTA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
20 5 0.15
21 20 0.59
22 9 0.26
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (21 bp):
TATTAATATTAATCTAATATT
Found at i:20876137 original size:10 final size:10
Alignment explanation
Indices: 20876108--20876141 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
20876098 TAAGATTTTA
20876108 TATTAATATT
1 TATTAATATT
*
20876118 AATCTAATATT
1 TAT-TAATATT
20876129 TATTAATATT
1 TATTAATATT
20876139 TAT
1 TAT
20876142 CTTAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (10 bp):
TATTAATATT
Found at i:20876166 original size:5 final size:6
Alignment explanation
Indices: 20876107--20876172 Score: 56
Period size: 6 Copynumber: 12.2 Consensus size: 6
20876097 ATAAGATTTT
* * *
20876107 ATATTA ATATTA AT-CTA ATATT- -TATTA ATATTT ATCTTA ATA--A
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
20876150 ATATT- ATATTA AT-TTA ATATTA A
1 ATATTA ATATTA ATATTA ATATTA A
20876173 AGTGATTAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
4 8 0.17
5 14 0.30
6 25 0.53
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (6 bp):
ATATTA
Found at i:20877616 original size:26 final size:26
Alignment explanation
Indices: 20877580--20877630 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20877570 GAAATGTGAA
*
20877580 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
20877606 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
20877631 AGTTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:20877642 original size:102 final size:102
Alignment explanation
Indices: 20877503--20877765 Score: 404
Period size: 102 Copynumber: 2.6 Consensus size: 102
20877493 GTTGTACATA
** *
20877503 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
20877568 TTGAAATGTGAAAGGGGTTGCTATGTGCTGATT-CCCC
66 CTGAAAT-AAAAAGGGGTTGCTATGTGCTGATTCCCCC
*
20877605 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
20877669 TCTGAAATAAAAAGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATAAAAAGGGGTTGCTATGTGCTGATTCCCCC
* * *
20877707 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
20877766 AATAACGGTT
Statistics
Matches: 147, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
101 24 0.16
102 122 0.83
103 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (102 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATAAAAAGGGGTTGCTATGTGCTGATTCCCCC
Found at i:20877710 original size:27 final size:27
Alignment explanation
Indices: 20877680--20877732 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
20877670 CTGAAATAAA
*
20877680 AAGGGGTTGCTATGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
20877707 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
20877733 GATTAAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:20892014 original size:40 final size:40
Alignment explanation
Indices: 20891960--20892117 Score: 244
Period size: 40 Copynumber: 4.0 Consensus size: 40
20891950 CGGAAGTAAC
*
20891960 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
**
20892000 AACCCGCATGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
20892040 AACCCGCACAAATGCCTTCGGGACCTAACCCGATTATAAT
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
20892080 AACCCGCACAAATGCCTTAGAGACGTAACCCGGTTATA
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATA
20892118 TTTTTTTTCA
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (40 bp):
AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:20899917 original size:40 final size:40
Alignment explanation
Indices: 20899863--20899940 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
20899853 CGGATGTAAC
20899863 AACCAGCACAAATGCCTTCGGGACTTAACCCAGTTATAGT
1 AACCAGCACAAATGCCTTCGGGACTTAACCCAGTTATAGT
* * *
20899903 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCAGCACAAATGCCTTCGGGACTTAACCCAGTTATA
20899941 TTTTTTTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCAGCACAAATGCCTTCGGGACTTAACCCAGTTATAGT
Found at i:20903919 original size:58 final size:58
Alignment explanation
Indices: 20903827--20904028 Score: 305
Period size: 58 Copynumber: 3.5 Consensus size: 58
20903817 TTTGATGGTA
* * *
20903827 AAAAGGATTTAGCTCGGACGGGTGATCCTGATATAATCCCTCCCGAAGAATATGTGTG
1 AAAAGGATCTAGCCCGGACGGGTGATCCTGATATAAGCCCTCCCGAAGAATATGTGTG
* * * *
20903885 AAAAGGATCTAGCCCAGACGAGTGATCCTAATATAAGCCCTCCTGAAGAATATGTGTG
1 AAAAGGATCTAGCCCGGACGGGTGATCCTGATATAAGCCCTCCCGAAGAATATGTGTG
*
20903943 AAAAGGATCTAGCCCGGACGGGTGATCCTGATATAAGCCTTCCCGAAGAATATGTGTG
1 AAAAGGATCTAGCCCGGACGGGTGATCCTGATATAAGCCCTCCCGAAGAATATGTGTG
* * *
20904001 AAATGGATTTAGCCCGGACGGGTAATCC
1 AAAAGGATCTAGCCCGGACGGGTGATCC
20904029 AAAGTAAATG
Statistics
Matches: 129, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 129 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (58 bp):
AAAAGGATCTAGCCCGGACGGGTGATCCTGATATAAGCCCTCCCGAAGAATATGTGTG
Found at i:20904263 original size:67 final size:67
Alignment explanation
Indices: 20904155--20904285 Score: 201
Period size: 67 Copynumber: 2.0 Consensus size: 67
20904145 CATATGTTAC
*
20904155 AGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCATGGGAGTGTGCTCTCTT
1 AGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTCTT
20904220 AT
66 AT
* ** *
20904222 AGGGGATTTAGCCTGGACTGGTAATC-CTGCTGTAAGAAATGAGGTTTGCGGGAGTGTGTTCTCT
1 AGGGGATTTAGCCTGGACTAGTAATCTC-GCTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTCT
20904286 GAAAAGGACT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 1 0.02
67 57 0.98
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (67 bp):
AGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTCTT
AT
Found at i:20905540 original size:14 final size:15
Alignment explanation
Indices: 20905521--20905554 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
20905511 TAAAATATTT
20905521 AAATAAATAAA-TAA
1 AAATAAATAAATTAA
20905535 AAATAAATAAATTAA
1 AAATAAATAAATTAA
20905550 AAATA
1 AAATA
20905555 TTCTCCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAAATAAATTAA
Found at i:20907873 original size:27 final size:28
Alignment explanation
Indices: 20907789--20907886 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
20907779 CATGAGATTG
* * * *
20907789 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
20907818 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
20907846 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
20907873 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
20907887 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:20907897 original size:27 final size:27
Alignment explanation
Indices: 20907817--20907899 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
20907807 TAAATTGTAC
* *
20907817 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
20907845 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
20907872 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
20907899 A
1 A
20907900 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:20907900 original size:29 final size:27
Alignment explanation
Indices: 20907789--20907900 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
20907779 CATGAGATTG
** * *
20907789 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
20907818 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
20907846 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
20907873 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
20907901 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:20909518 original size:18 final size:18
Alignment explanation
Indices: 20909495--20909531 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
20909485 TAAAATTTTC
20909495 TTGTTATAAATATTTACT
1 TTGTTATAAATATTTACT
20909513 TTGTTATAAATATTTACT
1 TTGTTATAAATATTTACT
20909531 T
1 T
20909532 ATTCTACTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (18 bp):
TTGTTATAAATATTTACT
Found at i:20910083 original size:16 final size:17
Alignment explanation
Indices: 20910043--20910084 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
20910033 ACCATGATTA
20910043 TATC-AATTTATCTATC
1 TATCTAATTTATCTATC
20910059 TATCT-ATTTATCTATC
1 TATCTAATTTATCTATC
20910075 TA-CTAATTTA
1 TATCTAATTTA
20910085 CTTTTTCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.08
16 22 0.92
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.52
Consensus pattern (17 bp):
TATCTAATTTATCTATC
Found at i:20914383 original size:16 final size:16
Alignment explanation
Indices: 20914359--20914413 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
20914349 TGAATTACTT
*
20914359 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
20914375 ATTACAGCTCTGTTCA
1 ATTACAGCTCTATTCC
* *
20914391 ATTACAACCCTATTCC
1 ATTACAGCTCTATTCC
20914407 ATTACAG
1 ATTACAG
20914414 TGAACCAAAC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:20914680 original size:29 final size:30
Alignment explanation
Indices: 20914637--20914695 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
20914627 GAATTGGATC
*
20914637 AAATCAAAATTTCATGTATAAAATTGCACA
1 AAATCAAAAGTTCATGTATAAAATTGCACA
*
20914667 AAATC-AAAGTTCATGTATACAATTGCACA
1 AAATCAAAAGTTCATGTATAAAATTGCACA
20914696 TTAAACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.29
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTATAAAATTGCACA
Found at i:20915224 original size:54 final size:55
Alignment explanation
Indices: 20915156--20915288 Score: 148
Period size: 54 Copynumber: 2.5 Consensus size: 55
20915146 TGCCAGGCCA
* *
20915156 TGTAAC-TTTCGAAATGATGCCACACGGCCATGTCGCTAGCTGA-GCGCTAGCACG
1 TGTAACATTTCGAAATAACGCCACACGGCCATGTCGCTAGCT-ACGCGCTAGCACG
* * * * *
20915210 TGTAACATTT-GAAATAACGCCACACGGTCGTGTCGCTGGCTACGTGCTAGCCCG
1 TGTAACATTTCGAAATAACGCCACACGGCCATGTCGCTAGCTACGCGCTAGCACG
* *
20915264 TGTAACA-TTCAAAATAACACCACAC
1 TGTAACATTTCGAAATAACGCCACAC
20915289 AGTCGTGTCG
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
53 3 0.04
54 61 0.91
55 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (55 bp):
TGTAACATTTCGAAATAACGCCACACGGCCATGTCGCTAGCTACGCGCTAGCACG
Found at i:20917010 original size:18 final size:18
Alignment explanation
Indices: 20916974--20917090 Score: 148
Period size: 18 Copynumber: 6.5 Consensus size: 18
20916964 AATCATATCT
*
20916974 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
20916993 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
20917011 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
20917028 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
20917046 TCTAAGATTGC-CTCATA
1 TCTAAGATTGCAATCATA
* * *
20917063 TCTATGATTCCATATCACA
1 TCTAAGATTGCA-ATCATA
20917082 TCTAAGATT
1 TCTAAGATT
20917091 TCATATCATT
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
17 30 0.35
18 33 0.38
19 23 0.27
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:20917032 original size:35 final size:35
Alignment explanation
Indices: 20916974--20917090 Score: 162
Period size: 35 Copynumber: 3.3 Consensus size: 35
20916964 AATCATATCT
20916974 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
20917011 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
** * * *
20917046 TCTAAGATTGCCTCATATCTATGATTCCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
20917082 TCTAAGATT
1 TCTAAGATT
20917091 TCATATCATT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
35 50 0.68
36 14 0.19
37 10 0.14
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:20917943 original size:207 final size:207
Alignment explanation
Indices: 20917488--20918411 Score: 1544
Period size: 207 Copynumber: 4.5 Consensus size: 207
20917478 AAATCTGCTT
* * *
20917488 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * * * * *
20917553 GCGAAGGGCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * *
20917618 GGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
20917682 GGAGACGCCAAA
196 GGAGACGCCAAA
* * *
20917694 CTTCGATTTGTTCTCTGACAATACAAAAATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
*
20917759 GTGAAAGCCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
20917824 GGATTTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
20917889 GGAGACGCCAAA
196 GGAGACGCCAAA
* *
20917901 CTTCGATTTGTTCTCTGACAATACAGAGATGGCACATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
*
20917966 GTGAAAGCCAAATAAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
20918031 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
20918096 GGAGACGCCAAA
196 GGAGACGCCAAA
* * *
20918108 CTTTGGTTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
20918173 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
20918238 GGATCTTACTTTAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
20918303 GGAGATGCCAAA
196 GGAGACGCCAAA
* *
20918315 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
20918380 GTGAAAGCCAAATCAGCTATGTCTTCGATTTG
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTG
20918412 CTCTCCGTCG
Statistics
Matches: 672, Mismatches: 45, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
206 121 0.18
207 551 0.82
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:20918530 original size:131 final size:124
Alignment explanation
Indices: 20918290--20918520 Score: 311
Period size: 131 Copynumber: 1.8 Consensus size: 124
20918280 TGTGTCTACC
**
20918290 CTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCAT
1 CTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTAACAATACAGAGACACCAAATCAT
* *
20918355 CTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCT
66 CTTAGATCTGCTTCATCGTAAACACCTGAAAGCCAAATCAGCTATGTCTTCGATTTGCT
*
20918414 CTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGACACC
1 CTCCGTCGAATATGGAGATGCC-AA---A---CTTCGATTTGTTCTCTAACAATACAGAGACACC
* * *
20918479 AAATCATCTTGGATCTGCTTCAGT-GTGAACACCTGAAGGCCA
59 AAATCATCTTAGATCTGCTTCA-TCGTAAACACCTGAAAGCCA
20918521 GATTTGCTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
124 22 0.24
125 2 0.02
128 1 0.01
131 65 0.71
132 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (124 bp):
CTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTAACAATACAGAGACACCAAATCAT
CTTAGATCTGCTTCATCGTAAACACCTGAAAGCCAAATCAGCTATGTCTTCGATTTGCT
Found at i:20918641 original size:84 final size:85
Alignment explanation
Indices: 20918533--20918738 Score: 301
Period size: 84 Copynumber: 2.4 Consensus size: 85
20918523 TTTGCTATAC
*
20918533 TTTAACCTGTTACCCTACTACTTAGGGGGTTAAGGCGCA-TCTTCGATCTAC-TCGACTACTGCT
1 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTACTTC-ACTACTGCT
* *
20918596 TATGGAGATAAGATCCGCAAT
65 TAGGGAGATAAGATCCGCAAA
* * * *
20918617 TTTGACCTATTACCCTACTGCTTAGGGGGTTAGGGCG-AGTCTTCGATCTGCTTCACTACTGCTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTACTTCACTACTGCTT
*
20918681 AGGGAGATAAGATCTGCAAA
66 AGGGAGATAAGATCCGCAAA
*
20918701 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGC
20918739 TGAATTTTGT
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
83 1 0.01
84 104 0.97
85 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (85 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTACTTCACTACTGCTT
AGGGAGATAAGATCCGCAAA
Found at i:20918961 original size:14 final size:14
Alignment explanation
Indices: 20918942--20918972 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
20918932 TATTCATCTA
20918942 TCGAGCTTTCTACC
1 TCGAGCTTTCTACC
20918956 TCGAGCTTTCTACC
1 TCGAGCTTTCTACC
20918970 TCG
1 TCG
20918973 TTCTTCTCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.35, G:0.16, T:0.35
Consensus pattern (14 bp):
TCGAGCTTTCTACC
Found at i:20919717 original size:7 final size:7
Alignment explanation
Indices: 20919707--20919783 Score: 77
Period size: 7 Copynumber: 10.9 Consensus size: 7
20919697 CCATTTTTGT
20919707 TTTTTTC
1 TTTTTTC
20919714 TTTTTTCTC
1 -TTTTT-TC
20919723 TTTTTCTC
1 TTTTT-TC
20919731 TTTTTTC
1 TTTTTTC
20919738 TTTTTTC
1 TTTTTTC
20919745 TTTTTTC
1 TTTTTTC
*
20919752 TCTTTT-
1 TTTTTTC
* *
20919758 TATTTTA
1 TTTTTTC
20919765 TTTTTTC
1 TTTTTTC
*
20919772 -TTCTTC
1 TTTTTTC
20919778 TTTTTT
1 TTTTTT
20919784 TTTGAAATAG
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
6 10 0.17
7 30 0.50
8 18 0.30
9 2 0.03
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTTC
Found at i:20919726 original size:15 final size:15
Alignment explanation
Indices: 20919708--20919763 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
20919698 CATTTTTGTT
20919708 TTTTTCTTTTTTCTC
1 TTTTTCTTTTTTCTC
20919723 TTTTTCTCTTTTT-TC
1 TTTTTCT-TTTTTCTC
20919738 TTTTTTCTTTTTTCTC
1 -TTTTTCTTTTTTCTC
*
20919754 TTTTTATTTT
1 TTTTTCTTTT
20919764 ATTTTTTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
15 23 0.62
16 14 0.38
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTCTTTTTTCTC
Found at i:20919734 original size:24 final size:24
Alignment explanation
Indices: 20919707--20919785 Score: 97
Period size: 24 Copynumber: 3.2 Consensus size: 24
20919697 CCATTTTTGT
20919707 TTTTTTCTTTTTTCTCTTTTTCTC
1 TTTTTTCTTTTTTCTCTTTTTCTC
20919731 TTTTTTCTTTTTTCT-TTTTTCTC
1 TTTTTTCTTTTTTCTCTTTTTCTC
* * * *
20919754 TTTTTATTTTATTTTTTCTTCTTCTT
1 TTTTT-TCTT-TTTTCTCTTTTTCTC
20919780 TTTTTT
1 TTTTTT
20919786 TGAAATAGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
23 13 0.27
24 18 0.38
25 6 0.12
26 11 0.23
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (24 bp):
TTTTTTCTTTTTTCTCTTTTTCTC
Found at i:20919775 original size:23 final size:21
Alignment explanation
Indices: 20919707--20919786 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 21
20919697 CCATTTTTGT
*
20919707 TTTTTTCTTTTTTCTCTTTTTCTC
1 TTTTTT-TTTTTT-T-TTCTTCTC
*
20919731 TTTTTTCTTTTTTCTTTTTTCTC
1 TTTTTT-TTTTTT-TTTCTTCTC
20919754 TTTTTATTTTATTTTTTCTTCTTC
1 TTTTT-TTTT-TTTTTTCTTC-TC
20919778 TTTTTTTTT
1 TTTTTTTTT
20919787 GAAATAGAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
23 26 0.50
24 26 0.50
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTTTTTTTTTTTCTTCTC
Found at i:20919783 original size:20 final size:19
Alignment explanation
Indices: 20919735--20919783 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
20919725 TTTCTCTTTT
*
20919735 TTCTTTTTTCTTTTTTCTC
1 TTCTTTTTTATTTTTTCTC
*
20919754 TTTTTATTTTATTTTTTCTTC
1 TTCTT-TTTTATTTTTTC-TC
20919775 TTCTTTTTT
1 TTCTTTTTT
20919784 TTTGAAATAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 4 0.16
20 15 0.60
21 6 0.24
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (19 bp):
TTCTTTTTTATTTTTTCTC
Found at i:20921574 original size:24 final size:24
Alignment explanation
Indices: 20921482--20921576 Score: 122
Period size: 24 Copynumber: 4.0 Consensus size: 24
20921472 GCTTTATCAT
*
20921482 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
20921507 ATAACTGGGGCA-AAGCCCTATTC
1 ATAACTGGGGCATAAGCCCTTTTA
*
20921530 AGAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
20921554 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
20921577 GTACTTCCTC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
23 15 0.25
24 38 0.62
25 8 0.13
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:20921651 original size:20 final size:20
Alignment explanation
Indices: 20921626--20921692 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
20921616 TTATGAATAC
*
20921626 ATCATGTGCATATCATCCAG
1 ATCATGTGCATATCATACAG
*
20921646 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAG
20921666 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAG
20921686 ATCATGT
1 ATCATGT
20921693 ATATCAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAG
Found at i:20921660 original size:11 final size:11
Alignment explanation
Indices: 20921626--20921681 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
20921616 TTATGAATAC
20921626 ATCATGTGCAT
1 ATCATGTGCAT
* *
20921637 ATCA--TCCAG
1 ATCATGTGCAT
20921646 ATCATGTGCAT
1 ATCATGTGCAT
*
20921657 ATCA--TACAT
1 ATCATGTGCAT
20921666 ATCATGTGCAT
1 ATCATGTGCAT
20921677 ATCAT
1 ATCAT
20921682 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:20928014 original size:24 final size:24
Alignment explanation
Indices: 20927963--20928033 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
20927953 CCATGTGGGG
*
20927963 AATAACTGGGGCA-AAGCCCTTAT
1 AATAACTGGGGCATAAGCCCTTTT
*
20927986 CATAACTGGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
*
20928010 AATAACTAGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
20928034 GTACTTCCTC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 12 0.28
24 31 0.72
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (24 bp):
AATAACTGGGGCATAAGCCCTTTT
Found at i:20928108 original size:20 final size:19
Alignment explanation
Indices: 20928079--20928149 Score: 108
Period size: 20 Copynumber: 3.6 Consensus size: 19
20928069 GCATTTATGA
20928079 ATAC-ATCATGTGCATATC
1 ATACAATCATGTGCATATC
20928097 ATACAGATCATGTGCATATC
1 ATACA-ATCATGTGCATATC
20928117 ATACATATCATGTGCATATC
1 ATACA-ATCATGTGCATATC
20928137 ATATCAATCATGT
1 ATA-CAATCATGT
20928150 ATATCAAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 4 0.08
20 43 0.88
21 2 0.04
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.34
Consensus pattern (19 bp):
ATACAATCATGTGCATATC
Found at i:20928117 original size:11 final size:11
Alignment explanation
Indices: 20928083--20928138 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
20928073 TTATGAATAC
20928083 ATCATGTGCAT
1 ATCATGTGCAT
* *
20928094 ATCA--TACAG
1 ATCATGTGCAT
20928103 ATCATGTGCAT
1 ATCATGTGCAT
*
20928114 ATCA--TACAT
1 ATCATGTGCAT
20928123 ATCATGTGCAT
1 ATCATGTGCAT
20928134 ATCAT
1 ATCAT
20928139 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:20930694 original size:11 final size:10
Alignment explanation
Indices: 20930673--20930698 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
20930663 ATATATAATC
20930673 TTTTTTCTTT
1 TTTTTTCTTT
20930683 TTTTTTCTTT
1 TTTTTTCTTT
20930693 TTTTTT
1 TTTTTT
20930699 AAGATGGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:20934955 original size:17 final size:18
Alignment explanation
Indices: 20934903--20935020 Score: 150
Period size: 18 Copynumber: 6.6 Consensus size: 18
20934893 AATCATATCT
*
20934903 TCTAAGATTGTATATCATA
1 TCTAAGATTG-AAATCATA
*
20934922 TCTAAGATTGCAATCATA
1 TCTAAGATTGAAATCATA
20934940 TCTAAGATTG-AATCATA
1 TCTAAGATTGAAATCATA
20934957 TCTAAGATTGAAATCATA
1 TCTAAGATTGAAATCATA
*
20934975 TCTAAGATTG-TATCATA
1 TCTAAGATTGAAATCATA
* * *
20934992 TCTAAGATTCCATATCACA
1 TCTAAGATT-GAAATCATA
20935011 TCTAAGATTG
1 TCTAAGATTG
20935021 CATATCATTG
Statistics
Matches: 90, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
17 32 0.36
18 33 0.37
19 25 0.28
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.36
Consensus pattern (18 bp):
TCTAAGATTGAAATCATA
Found at i:20934960 original size:35 final size:35
Alignment explanation
Indices: 20934903--20935020 Score: 173
Period size: 35 Copynumber: 3.3 Consensus size: 35
20934893 AATCATATCT
20934903 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-A-ATCATATCTAAGATTGCAATCATA
*
20934940 TCTAAGATTGAATCATATCTAAGATTGAAATCATA
1 TCTAAGATTGAATCATATCTAAGATTGCAATCATA
* * *
20934975 TCTAAGATTGTATCATATCTAAGATTCCATATCACA
1 TCTAAGATTGAATCATATCTAAGATTGCA-ATCATA
20935011 TCTAAGATTG
1 TCTAAGATTG
20935021 CATATCATTG
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
35 49 0.65
36 16 0.21
37 10 0.13
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.36
Consensus pattern (35 bp):
TCTAAGATTGAATCATATCTAAGATTGCAATCATA
Found at i:20936772 original size:16 final size:16
Alignment explanation
Indices: 20936751--20936782 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
20936741 ATAAGTCTAC
20936751 TACTCAATCACATTCA
1 TACTCAATCACATTCA
20936767 TACTCAATCACATTCA
1 TACTCAATCACATTCA
20936783 ATATTAAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (16 bp):
TACTCAATCACATTCA
Found at i:20941355 original size:16 final size:17
Alignment explanation
Indices: 20941321--20941356 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
20941311 TTCCTTTGGT
20941321 TTTACTTTAATCTAAAA
1 TTTACTTTAATCTAAAA
20941338 TTTACTTTAATC-AAAA
1 TTTACTTTAATCTAAAA
20941354 TTT
1 TTT
20941357 TAACAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTACTTTAATCTAAAA
Found at i:20946357 original size:17 final size:18
Alignment explanation
Indices: 20946335--20946371 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
20946325 TATAATTTCT
20946335 AGAAAATT-TATTAATTG
1 AGAAAATTATATTAATTG
*
20946352 AGAAAATTATCTTAATTG
1 AGAAAATTATATTAATTG
20946370 AG
1 AG
20946372 GGGTTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.38
Consensus pattern (18 bp):
AGAAAATTATATTAATTG
Found at i:20947514 original size:50 final size:51
Alignment explanation
Indices: 20947437--20947565 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
20947427 GACCATGGCA
20947437 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
* *
20947488 A-AAGTGATAAGTGATAGCTTTGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
20947538 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
20947566 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:20947579 original size:31 final size:31
Alignment explanation
Indices: 20947541--20947720 Score: 281
Period size: 31 Copynumber: 5.8 Consensus size: 31
20947531 ACAAATGACA
20947541 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
20947572 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
20947603 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CAGCTACCTGATC
*
20947634 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* * * *
20947665 AGTGAAAAATGGTAGCTCCGGCTACCCGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
20947696 AGTGAATAGTGGTAGCTTCAGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
20947721 AAGTGACAAG
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
30 2 0.01
31 134 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:20947809 original size:47 final size:46
Alignment explanation
Indices: 20947740--20947902 Score: 147
Period size: 47 Copynumber: 3.6 Consensus size: 46
20947730 GTGATTTCCA
* *
20947740 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTG
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATAC-G
* * * *
20947787 TATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTCG
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACG
* * * * *
20947833 TGTAAGACCATAGCTGGGCTAGGGCATC-----GATATATGAATATG
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATACG
* * *
20947875 TGTAAGACCATAGCTGGGCTATGGCATC
1 TATAAGACCATATCTGGGATATGGCATC
20947903 ATTATGTGAA
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 7 0.07
42 30 0.30
46 24 0.24
47 39 0.39
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACG
Found at i:20947939 original size:42 final size:42
Alignment explanation
Indices: 20947832--20947946 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 42
20947822 TATGTGATTC
* *
20947832 GTGTAAGACCATAGCTGGGCTAGGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
*
20947874 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
* **
20947916 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
20947947 GAAAACGAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Found at i:20949025 original size:20 final size:20
Alignment explanation
Indices: 20949000--20949099 Score: 161
Period size: 20 Copynumber: 5.2 Consensus size: 20
20948990 TATCTTACAT
**
20949000 GCCCGTGTGCAACTTCACAC
1 GCCCGTGTGCGTCTTCACAC
20949020 GCCCGTGTGCGTCTTCACAC
1 GCCCGTGTGCGTCTTCACAC
20949040 GCCCGTGTGCGTCTTCACAC
1 GCCCGTGTGCGTCTTCACAC
20949060 GCCCGTGTGCGTCTTCACA-
1 GCCCGTGTGCGTCTTCACAC
20949079 --CCGTGTGCGTCTTCACAC
1 GCCCGTGTGCGTCTTCACAC
20949097 GCC
1 GCC
20949100 TGGTGCATGG
Statistics
Matches: 75, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
20 58 0.77
ACGTcount: A:0.12, C:0.40, G:0.24, T:0.24
Consensus pattern (20 bp):
GCCCGTGTGCGTCTTCACAC
Found at i:20950395 original size:83 final size:83
Alignment explanation
Indices: 20950254--20950432 Score: 277
Period size: 83 Copynumber: 2.2 Consensus size: 83
20950244 ATGCTTTGGG
* * *
20950254 ACACGCCCGTGTCCCTTACCTGTGTGGAATTTTAAGAATTTATTTTTCATTTCGAACCTATAGGG
1 ACACGCCCGTGTCCCTTACCCGTGTGGAATTTTAAGAATTTATTTTTCATTTCAAACCTACAGGG
*
20950319 GTTTTCACACGGCCAAGC
66 GTTTTCACACAGCCAAGC
* * *
20950337 ACACGCCTGTGTCCCTTACCCGTGTGGAATTTTTAGAATTTATTTTTGATTTCAAACCTACAGGG
1 ACACGCCCGTGTCCCTTACCCGTGTGGAATTTTAAGAATTTATTTTTCATTTCAAACCTACAGGG
*
20950402 TTTTTCACACAGCCAAGC
66 GTTTTCACACAGCCAAGC
*
20950420 ACATGCCCGTGTC
1 ACACGCCCGTGTC
20950433 ATCACCCGTG
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 86 1.00
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (83 bp):
ACACGCCCGTGTCCCTTACCCGTGTGGAATTTTAAGAATTTATTTTTCATTTCAAACCTACAGGG
GTTTTCACACAGCCAAGC
Found at i:20959576 original size:29 final size:30
Alignment explanation
Indices: 20959533--20959591 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
20959523 GAATTGGATC
* *
20959533 AAATCAAAATTTCATGTATAAAATTGCACA
1 AAATCAAAAGTTCATGTATAAAATTACACA
*
20959563 AAATC-AAAGTTCATGTATACAATTACACA
1 AAATCAAAAGTTCATGTATAAAATTACACA
20959592 TTAAACCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTATAAAATTACACA
Found at i:20965700 original size:30 final size:29
Alignment explanation
Indices: 20965650--20965723 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 29
20965640 GCAACCCAAT
*
20965650 CTTTATTTTTATTT-TTATTTATTATTTTC
1 CTTTATTTTT-TTTATTATTTATTATTTTA
20965679 CTTTATTTTCTTTTATTATTTATTATTTTA
1 CTTTATTTT-TTTTATTATTTATTATTTTA
*
20965709 TTTTATTTTATTTTA
1 CTTTATTTT-TTTTA
20965724 GTTAAATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
29 12 0.30
30 28 0.70
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (29 bp):
CTTTATTTTTTTTATTATTTATTATTTTA
Found at i:20965709 original size:5 final size:5
Alignment explanation
Indices: 20965651--20965723 Score: 58
Period size: 5 Copynumber: 13.8 Consensus size: 5
20965641 CAACCCAATC
** *
20965651 TTTATT TTTATT TTTATT TATTAT TTTCC TTTAT TTTCT TTTAT TATT-T
1 TTTA-T TTTA-T TTTA-T T-TTAT TTTAT TTTAT TTTAT TTTAT T-TTAT
*
20965700 ATTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTA
20965724 GTTAAATATT
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
4 2 0.04
5 34 0.61
6 17 0.30
7 3 0.05
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:20965876 original size:42 final size:42
Alignment explanation
Indices: 20965830--20965934 Score: 147
Period size: 42 Copynumber: 2.5 Consensus size: 42
20965820 ATCCATGGTA
*
20965830 CCAAACAGTTCTATTCCAGCCCAAAATGCCATATCCCTACTG
1 CCAAACAGTTCTATTCCAGCCCAAAATGCCATATCCCTACAG
* * * *
20965872 CCAAACAGTTCTATTCCAGCCCAGAATGTCATATCTCTGCAG
1 CCAAACAGTTCTATTCCAGCCCAAAATGCCATATCCCTACAG
* *
20965914 CCAAACAATCCTATTCCAGCC
1 CCAAACAGTTCTATTCCAGCC
20965935 TTAGAATCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.30, C:0.35, G:0.10, T:0.24
Consensus pattern (42 bp):
CCAAACAGTTCTATTCCAGCCCAAAATGCCATATCCCTACAG
Found at i:20972207 original size:22 final size:22
Alignment explanation
Indices: 20972155--20972231 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
20972145 GTTCTAGTAC
*
20972155 GATATATGATAAGCTCTGATACT
1 GATATATGATATGCTCTGATA-T
* * *
20972178 -TTACATGATATGCTTTGATAT
1 GATATATGATATGCTCTGATAT
*
20972199 GATATATGACATGCTCTGATAT
1 GATATATGATATGCTCTGATAT
20972221 G-TAATATGATA
1 GAT-ATATGATA
20972232 CGAAATTTTA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.05
22 41 0.95
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (22 bp):
GATATATGATATGCTCTGATAT
Found at i:20973067 original size:12 final size:12
Alignment explanation
Indices: 20973050--20973075 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20973040 TATTTGTTTC
20973050 TTGTTTTAATAT
1 TTGTTTTAATAT
20973062 TTGTTTTAATAT
1 TTGTTTTAATAT
20973074 TT
1 TT
20973076 TTAAATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:20973088 original size:24 final size:25
Alignment explanation
Indices: 20973059--20973105 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
20973049 CTTGTTTTAA
*
20973059 TATTTGTTTTAATAT-TTTTAAATG
1 TATTTGATTTAATATATTTTAAATG
*
20973083 TATTTGATTTATTATATTTTAAA
1 TATTTGATTTAATATATTTTAAA
20973106 AATTTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (25 bp):
TATTTGATTTAATATATTTTAAATG
Found at i:20973464 original size:26 final size:26
Alignment explanation
Indices: 20973428--20973537 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
20973418 TGATACAAAT
20973428 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
20973454 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
20973480 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
20973506 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
20973532 TGATAA
1 TGATAA
20973538 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:20978393 original size:19 final size:20
Alignment explanation
Indices: 20978355--20978404 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
20978345 TTTTTTATAC
20978355 TTTATTT-TTCTTTGTATTTA
1 TTTATTTATT-TTTGTATTTA
20978375 TTTATTTATTTTT-TATTTA
1 TTTATTTATTTTTGTATTTA
**
20978394 TACATTTATTT
1 TTTATTTATTT
20978405 GTTTTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 15 0.56
20 10 0.37
21 2 0.07
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTATTTATTTTTGTATTTA
Found at i:20978450 original size:18 final size:19
Alignment explanation
Indices: 20978429--20978473 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
20978419 TTTTTTCACA
20978429 ATTATTATTAT-TTTATAT
1 ATTATTATTATATTTATAT
20978447 ATTATTATT-TATTTATAT
1 ATTATTATTATATTTATAT
20978465 ATT-TTATTA
1 ATTATTATTA
20978474 CAAATTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTATTATTATATTTATAT
Found at i:20983226 original size:22 final size:20
Alignment explanation
Indices: 20983186--20983227 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
20983176 ACTGCCGAAA
20983186 TTCTCTTTTTTTTCCTCTTC
1 TTCTCTTTTTTTTCCTCTTC
* *
20983206 TTCTC-TATTTTTCTTCTTC
1 TTCTCTTTTTTTTCCTCTTC
20983225 TTC
1 TTC
20983228 AATTAGTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (20 bp):
TTCTCTTTTTTTTCCTCTTC
Found at i:20991091 original size:94 final size:94
Alignment explanation
Indices: 20990930--20991259 Score: 437
Period size: 94 Copynumber: 3.5 Consensus size: 94
20990920 GAGAAACCAT
* *
20990930 AAATCCTATACCCCTGAAGTTGCAGTGGGATAGATCGAAGTTATCATGG-AAAGTCTTATCTCTC
1 AAATCCTATACCCCTGAAGTTGCAGTGGGACAGATCGAAGTTATCATGGTGAA-TCTTATCTCTC
* *
20990994 TGAAGTTGTAGTGGAGCAGATTAAAGCCAA
65 TGAAGTTGCAGTGGAGAAGATTAAAGCCAA
** * * *
20991024 AAATCCTATACCCCTGAAGTTATAGTAGGACAAATCGAAGTTATCATGGTGAATCTTATCTCCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGACAGATCGAAGTTATCATGGTGAATCTTATCTCTCT
* * *
20991089 GAAGTAGCAGTGGAGTAGATTAAAGCCAT
66 GAAGTTGCAGTGGAGAAGATTAAAGCCAA
* * * * * *
20991118 AAATTCTATACCCCTAAAGTTGCAATGGGACAGATAGAAGTTATCATGGTGAATCTCATATCTCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGACAGATCGAAGTTATCATGGTGAATCTTATCTCTCT
*
20991183 GAAGTTGCAGTGGAGAAGATTAAAGCCAC
66 GAAGTTGCAGTGGAGAAGATTAAAGCCAA
* * * *
20991212 AAATCCCATACCTCTGAAGTTGCAGTGGTACAGATTGAAGTTATCATG
1 AAATCCTATACCCCTGAAGTTGCAGTGGGACAGATCGAAGTTATCATG
20991260 TATCTCTCCC
Statistics
Matches: 203, Mismatches: 32, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
94 201 0.99
95 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (94 bp):
AAATCCTATACCCCTGAAGTTGCAGTGGGACAGATCGAAGTTATCATGGTGAATCTTATCTCTCT
GAAGTTGCAGTGGAGAAGATTAAAGCCAA
Found at i:20991553 original size:94 final size:94
Alignment explanation
Indices: 20991381--20991560 Score: 252
Period size: 94 Copynumber: 1.9 Consensus size: 94
20991371 ACGGGCGGCA
* * * * * *
20991381 AATCTTATCTCTCTGAAGTTGCAGTAGAGCTGATTAAAGCCACAAGTCTTATACCTCTGAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCTCTAAAGTTG
* *
20991446 TAGTAGGTTGGATTAAATCTACTGTGGCG
66 CAGTAGGTAGGATTAAATCTACTGTGGCG
* * *
20991475 AATCTTATCTCCCTAAAGTTGTAGTAGAGCAGATTGAAGCGACAAATCCTATACCTCTAAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCTCTAAAGTTG
*
20991540 CAGTGGGTAGGATTAAATCTA
66 CAGTAGGTAGGATTAAATCTA
20991561 TCGTAGCAAG
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (94 bp):
AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCTCTAAAGTTG
CAGTAGGTAGGATTAAATCTACTGTGGCG
Found at i:20991575 original size:94 final size:93
Alignment explanation
Indices: 20991381--20991592 Score: 248
Period size: 94 Copynumber: 2.3 Consensus size: 93
20991371 ACGGGCGGCA
* * * * * *
20991381 AATCTTATCTCTCTGAAGTTGCAGTAGAGCTGATTAAAGCCACAAGTCTTATACCTCTGAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCTCTAAAGTTG
* * *
20991446 TAGTAGGTTGGATTAAATCTACTGTGGC
66 CAGTAGGTAGGATTAAATCTACTGTAGC
* * *
20991474 GAATCTTATCTCCCTAAAGTTGTAGTAGAGCAGATTGAAGCGACAAATCCTATACCTCTAAAGTT
1 -AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCTCTAAAGTT
*
20991539 GCAGTGGGTAGGATTAAATCTA-TCGTAGC
65 GCAGTAGGTAGGATTAAATCTACT-GTAGC
* *
20991568 AAGTCTTATTTCCCAAAAG-TGCAGT
1 AA-TCTTATCTCCCTAAAGTTGCAGT
20991593 GAAATAGATT
Statistics
Matches: 100, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 8 0.08
94 92 0.92
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (93 bp):
AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCTCTAAAGTTG
CAGTAGGTAGGATTAAATCTACTGTAGC
Found at i:20991683 original size:45 final size:43
Alignment explanation
Indices: 20991611--20992113 Score: 254
Period size: 45 Copynumber: 11.3 Consensus size: 43
20991601 TTAAAGCTAC
* *
20991611 AAGTTACAAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTG
1 AAGTTACAAATCTTATCTTC-TAAAGTTGCAGTGGAGCAGATTA
* * *
20991655 AAGTTAGCAAATCTTATCTATCTAAAGTTGCAATAGAACAGATTA
1 AAGTTA-CAAATCTTATCT-TCTAAAGTTGCAGTGGAGCAGATTA
* * * * * *
20991700 AAGCTACAAACCTTATCTCCCTAAAGTTACAGTGAAGCAGGTTA
1 AAGTTACAAATCTTATCT-TCTAAAGTTGCAGTGGAGCAGATTA
* * *
20991744 AAGATAACAAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTG
1 AAG-TTACAAATCTTATCTTC-TAAAGTTGCAGTGGAGCAGATTA
* * * * * *
20991789 AAGTTAGCGAATCTTATCTTTCTGAAGTTGTAGTAGAACATATTA
1 AAGTTA-CAAATCTTATC-TTCTAAAGTTGCAGTGGAGCAGATTA
* * * * * *
20991834 AAGCTACAAACCTTATCTCCCTAAAGTTGTAATGGAACATG-TTA
1 AAGTTACAAATCTTATCT-TCTAAAGTTGCAGTGGAGCA-GATTA
* * * * * ** * *
20991878 AAGATAAAAACTCTCATCTCCTTGAAGTTAAAATGGAGCAGACTA
1 AAGTTACAAA-TCTTATCTTC-TAAAGTTGCAGTGGAGCAGATTA
* * * * * **
20991923 AAGATACGAATCTTATTTCTCTAAAGTTGCGGTAGAATAGATTA
1 AAGTTACAAATCTTATCT-TCTAAAGTTGCAGTGGAGCAGATTA
* * ** * * * * *
20991967 CAGCTATGAATCTTTTCTTCCTATAGTTGCAATGGAGTAGATTG
1 AAGTTACAAATCTTATCTT-CTAAAGTTGCAGTGGAGCAGATTA
** * * * *
20992011 AAGACAACAAATGTTATCTCTCTGAAGTTGCAGTGGCGCAGATTG
1 AAG-TTACAAATCTTATCT-TCTAAAGTTGCAGTGGAGCAGATTA
* * * *
20992056 AAGATAACAAATCTTATCTCTCTGAAA-TTACAGTAGAGTAGATTA
1 AAG-TTACAAATCTTATCT-TCT-AAAGTTGCAGTGGAGCAGATTA
* *
20992101 AAGCTATAAATCT
1 AAGTTACAAATCT
20992114 CAACTCTCTT
Statistics
Matches: 348, Mismatches: 95, Indels: 32
0.73 0.20 0.07
Matches are distributed among these distances:
43 2 0.01
44 140 0.40
45 198 0.57
46 8 0.02
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (43 bp):
AAGTTACAAATCTTATCTTCTAAAGTTGCAGTGGAGCAGATTA
Found at i:20991727 original size:89 final size:88
Alignment explanation
Indices: 20991615--20992122 Score: 315
Period size: 89 Copynumber: 5.7 Consensus size: 88
20991605 AGCTACAAGT
* * * *
20991615 TACAAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAAATCTTATCTATCTAA
1 TACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTATCTCTCTAA
20991680 AGTTGCAATAGAACAGATTAAAGC
65 AGTTGCAATAGAACAGATTAAAGC
* * * * * * *
20991704 TACAAACCTTATCTCCCTAAAGTTACAGTGAAGCAGGTTAAAGATAACAAATCTTATCT-TCTTG
1 TACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGAT-ACAAATCTTATCTCTC-TA
* * * * *
20991768 AAGTTGCAGTGGAGCAGATTGAAGT
64 AAGTTGCAATAGAACAGATTAAAGC
* * * * * * * * *
20991793 TAGCGAATCTTATCTTTCTGAAGTTGTAGTAGAACATATTAAAGCTACAAACCTTATCTCCCTAA
1 TA-CAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCTCTAA
* * *
20991858 AGTTGTAATGGAACATG-TTAAAGA
65 AGTTGCAATAGAACA-GATTAAAGC
* * ** * * * *
20991882 TAAAAACTCTCATC-TCCTTGAAGTTAAAATGGAGCAGACTAAAGATACGAATCTTATTTCTCTA
1 TACAAA-TCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCTCTA
** * *
20991946 AAGTTGCGGTAGAATAGATTACAGC
64 AAGTTGCAATAGAACAGATTAAAGC
** * * * * * * *
20991971 TATGAATCTTTTCTTCCT-ATAGTTGCAATGGAGTAGATTGAAGACAACAAATGTTATCTCTCTG
1 TACAAATCTTATCTTCCTGA-AGTTGCAGTGGAGCAGATTAAAGA-TACAAATCTTATCTCTCTA
* * ** * *
20992035 AAGTTGCAGTGGCGCAGATTGAAGA
64 AAGTTGCAATAGAACAGATTAAAGC
* * * * * * * *
20992060 TAACAAATCTTATC-TCTCTGAAATTACAGTAGAGTAGATTAAAGCTATAAATCTCAACTCTCT
1 T-ACAAATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCTCT
20992123 TGCAGTAGGT
Statistics
Matches: 310, Mismatches: 95, Indels: 28
0.72 0.22 0.06
Matches are distributed among these distances:
87 1 0.00
88 32 0.10
89 214 0.69
90 62 0.20
91 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (88 bp):
TACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCTCTAAA
GTTGCAATAGAACAGATTAAAGC
Found at i:20991817 original size:134 final size:134
Alignment explanation
Indices: 20991616--20992106 Score: 526
Period size: 134 Copynumber: 3.7 Consensus size: 134
20991606 GCTACAAGTT
* *
20991616 ACAAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAAATCTTATCTATCTAAA
1 ACAAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTTTCTAAA
* * *
20991681 GTTGCAATAGAACAGATTAAAGCTACAAACCTTATCTCCCTAAAGTTACAGTGAAGCAGGTTAAA
66 GTTGCAGTAGAACAGATTAAAGCTACAAACCTTATCTCCCTAAAGTTGCAATGAAGCAGGTTAAA
20991746 GATA
131 GATA
* * *
20991750 ACAAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCGAATCTTATCTTTCTGAA
1 ACAAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTTTCTAAA
* * * *
20991815 GTTGTAGTAGAACATATTAAAGCTACAAACCTTATCTCCCTAAAGTTGTAATGGAA-CATGTTAA
66 GTTGCAGTAGAACAGATTAAAGCTACAAACCTTATCTCCCTAAAGTTGCAAT-GAAGCAGGTTAA
20991879 AGATA
130 AGATA
* * ** * * * *
20991884 A-AAACTCTCATCTCCTTGAAGTTAAAATGGAGCAGACTAAAGATA-CGAATCTTAT-TTCTCTA
1 ACAAA-TCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTT-TCTA
* * * ** * * * * * * * *
20991946 AAGTTGCGGTAGAATAGATTACAGCTATGAATCTTTTCTTCCTATAGTTGCAATGGAGTAGATTG
64 AAGTTGCAGTAGAACAGATTAAAGCTACAAACCTTATCTCCCTAAAGTTGCAATGAAGCAGGTTA
*
20992011 AAGACA
129 AAGATA
* * * *
20992017 ACAAATGTTATC-TCTCTGAAGTTGCAGTGGCGCAGATTGAAGATAACAAATCTTATCTCTCTGA
1 ACAAATCTTATCTTCT-TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTTTCT-A
* **
20992081 AA-TTACAGTAGAGTAGATTAAAGCTA
64 AAGTTGCAGTAGAACAGATTAAAGCTA
20992107 TAAATCTCAA
Statistics
Matches: 296, Mismatches: 52, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
132 6 0.02
133 95 0.32
134 188 0.64
135 7 0.02
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (134 bp):
ACAAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTTTCTAAA
GTTGCAGTAGAACAGATTAAAGCTACAAACCTTATCTCCCTAAAGTTGCAATGAAGCAGGTTAAA
GATA
Found at i:20997034 original size:26 final size:26
Alignment explanation
Indices: 20996998--20997081 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
20996988 CATGAAATTC
20996998 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
20997024 TTATCATGAAACATTTACCTAACCCG
1 TTATCATGAAACATTTACCTAACCCA
* *
20997050 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
20997076 TTATCA
1 TTATCA
20997082 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:21018792 original size:41 final size:41
Alignment explanation
Indices: 21018729--21018811 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
21018719 TGGGTGGTTA
*
21018729 TATCAAAGGTGATAGAACGAAACATATTTCACCAAAATTAT
1 TATCAAAGGTGACAGAACGAAACATATTTCACCAAAATTAT
*
21018770 TATCAAAGGTGACAGAATGAAACATATTTCACCAAAATTAT
1 TATCAAAGGTGACAGAACGAAACATATTTCACCAAAATTAT
21018811 T
1 T
21018812 CTTCACTCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (41 bp):
TATCAAAGGTGACAGAACGAAACATATTTCACCAAAATTAT
Found at i:21020366 original size:9 final size:9
Alignment explanation
Indices: 21020352--21020378 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
21020342 TTTGGCTTGT
21020352 TTTTCACTC
1 TTTTCACTC
21020361 TTTTCACTC
1 TTTTCACTC
21020370 TTTTCACTC
1 TTTTCACTC
21020379 CCCTATGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.33, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTTCACTC
Found at i:21022251 original size:13 final size:14
Alignment explanation
Indices: 21022225--21022254 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
21022215 ACAAAATTAA
21022225 AAATAAAGATAAAT
1 AAATAAAGATAAAT
21022239 AAATAAA-ATAAAT
1 AAATAAAGATAAAT
21022252 AAA
1 AAA
21022255 ACAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (14 bp):
AAATAAAGATAAAT
Found at i:21022876 original size:30 final size:30
Alignment explanation
Indices: 21022836--21022897 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
21022826 GTTAATAACT
* *
21022836 TACAAGAATTGGATC-AAATCAAAATTTCATG
1 TACAAGAATTGCA-CAAAATC-AAAGTTCATG
21022867 TACAA-AATTGCACAAAATCAAAGTTCATG
1 TACAAGAATTGCACAAAATCAAAGTTCATG
21022896 TA
1 TA
21022898 TACAATTGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.43
30 11 0.39
31 5 0.18
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (30 bp):
TACAAGAATTGCACAAAATCAAAGTTCATG
Found at i:21022894 original size:29 final size:30
Alignment explanation
Indices: 21022851--21022907 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
21022841 GAATTGGATC
*
21022851 AAATCAAAATTTCATGTACAAAATTGCACA
1 AAATCAAAAGTTCATGTACAAAATTGCACA
* *
21022881 AAATC-AAAGTTCATGTATACAATTGCA
1 AAATCAAAAGTTCATGTACAAAATTGCA
21022908 TATTAAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTACAAAATTGCACA
Found at i:21023984 original size:29 final size:29
Alignment explanation
Indices: 21023950--21024057 Score: 87
Period size: 29 Copynumber: 3.8 Consensus size: 29
21023940 ATATTATTGC
* *
21023950 TATTGTTATTATGTTTCTATTTATATTTA
1 TATTATTATTATATTTCTATTTATATTTA
* * * * *
21023979 TTTTGTTATTCTAATACTA-TTATTATTTA
1 TATTATTATTATATTTCTATTTA-TATTTA
* * *
21024008 TCTAATT-TGTAT-TTTCTATTTATATTTC
1 TATTATTAT-TATATTTCTATTTATATTTA
21024036 TATTATTATTATATTTCTATTT
1 TATTATTATTATATTTCTATTT
21024058 CTTATATTTT
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
28 21 0.35
29 39 0.65
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (29 bp):
TATTATTATTATATTTCTATTTATATTTA
Found at i:21024064 original size:15 final size:15
Alignment explanation
Indices: 21024027--21024074 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
21024017 TATTTTCTAT
*
21024027 TTATATTTCTATTATTA
1 TTATATTTCTA-T-TTC
21024044 TTATATTTCTATTTC
1 TTATATTTCTATTTC
*
21024059 TTATATTTTTATTTC
1 TTATATTTCTATTTC
21024074 T
1 T
21024075 ATTTATATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATATTTCTATTTC
Found at i:21024465 original size:44 final size:44
Alignment explanation
Indices: 21024402--21024491 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
21024392 TCTTTTTATG
21024402 TATCATTTGCTTAGAATTGTTTTATACTTTATTTTAGATTTTCT
1 TATCATTTGCTTAGAATTGTTTTATACTTTATTTTAGATTTTCT
21024446 TATCATTTGCTTAGAATTGTTTTATACTTTATTTTAGATTTTCT
1 TATCATTTGCTTAGAATTGTTTTATACTTTATTTTAGATTTTCT
21024490 TA
1 TA
21024492 CTTTGTATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.59
Consensus pattern (44 bp):
TATCATTTGCTTAGAATTGTTTTATACTTTATTTTAGATTTTCT
Found at i:21031122 original size:44 final size:43
Alignment explanation
Indices: 21031037--21031501 Score: 162
Period size: 44 Copynumber: 10.6 Consensus size: 43
21031027 ATTCACTAGC
* * *
21031037 CTTATCCCCCTAAGCAGTAGGGAACAGGTTGAAAATTACAGAT
1 CTTATCTCCTTAAGCAGTAGGGAACAGGCTGAAAATTACAGAT
21031080 CTTATCTCCTTAAGCAGTAGGGAAACAGGCTGAAAATTACAGAT
1 CTTATCTCCTTAAGCAGTAGGG-AACAGGCTGAAAATTACAGAT
* * ** ** * *
21031124 CTTATCT-CTCTAAGCAATAGTGGAGCA-AATCGAAGACGGT-GAG-C
1 CTTATCTCCT-TAAGCAGTAG-GGAACAGGCT-GAA-A-ATTACAGAT
* * * * * * *
21031168 CTTAACCCCCTAAACAGTAGAGAAACAGGTTGAAGATTACAGAT
1 CTTATCTCCTTAAGCAGTAG-GGAACAGGCTGAAAATTACAGAT
* * * * ** * * * *
21031212 CTTATCTCCCTAATCAATAGTGAAGTGGATCGAAGAAGT-GAG-C
1 CTTATCTCCTTAAGCAGTAGGGAACAGGCT-GAA-AATTACAGAT
* *
21031255 CTTAACTCC-TAAGCAGTAGGGTAACAGGCTAAAAATTACAGAT
1 CTTATCTCCTTAAGCAGTAGGG-AACAGGCTGAAAATTACAGAT
* * * ** * *
21031298 CTTATCTCCCTAAGCAGTAGTGGAGCA-GATCGAACACGGT-GAG-C
1 CTTATCTCCTTAAGCAGTAG-GGAACAGGCT-GAA-A-ATTACAGAT
* * * * **
21031342 CTTAACCCCTAAAGCAGTAGGGTAACAGGCTAAAAATTACATTT
1 CTTATCTCCTTAAGCAGTAGGG-AACAGGCTGAAAATTACAGAT
* * * * ** * *
21031386 CTTATCTCCCTAAGCAGTAGTGGAATAGACTGAACACGA-TGAGC
1 CTTATCTCCTTAAGCAGTAG-GGAACAGGCTGAAAATTACAGA-T
* * **
21031430 CTTAACCCCCGAAGCAGTAGGGTAACAGGCT-AGAAATTACAGAT
1 CTTATCTCCTTAAGCAGTAGGG-AACAGGCTGA-AAATTACAGAT
*
21031474 CTTATCTCCCTAAGCAGTAGTGGAACAG
1 CTTATCTCCTTAAGCAGTAG-GGAACAG
21031502 ATCGAACACG
Statistics
Matches: 295, Mismatches: 97, Indels: 59
0.65 0.22 0.13
Matches are distributed among these distances:
41 3 0.01
42 15 0.05
43 60 0.20
44 193 0.65
45 22 0.07
46 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (43 bp):
CTTATCTCCTTAAGCAGTAGGGAACAGGCTGAAAATTACAGAT
Found at i:21031208 original size:88 final size:88
Alignment explanation
Indices: 21031090--21033525 Score: 2989
Period size: 88 Copynumber: 27.7 Consensus size: 88
21031080 CTTATCTCCT
* * * *
21031090 TAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCTCTAAGCAATAGTGGAGCAAATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
21031155 GAAGACGGTGAGCCTTAACCCCC
66 GAAGACGGTGAGCCTTAACCCCC
* * * * * * * * **
21031178 TAAACAGTAGAGAAACAGGTTGAAGATTACAGATCTTATCTCCCTAATCAATAGTGAAGTGGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* *
21031243 GAAGA-AGTGAGCCTTAA-CTCC
66 GAAGACGGTGAGCCTTAACCCCC
*
21031264 TAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
21031329 GAACACGGTGAGCCTTAA-CCCC
66 GAAGACGGTGAGCCTTAACCCCC
* ** **
21031351 TAAAGCAGTAGGGTAACAGGCTAAAAATTACATTTCTTATCTCCCTAAGCAGTAGTGGAATAGA-
1 T-AAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* *
21031415 CTGAACACGATGAGCCTTAACCCCC
65 C-GAAGACGGTGAGCCTTAACCCCC
* *
21031440 GAAGCAGTAGGGTAACAGGCT-AGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAGAT
1 TAAGCAGTAGGGTAACAGGCTGA-AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* *
21031504 CGAACACGATGAGCCTTAACCCCC
65 CGAAGACGGTGAGCCTTAACCCCC
* * * * *
21031528 TAAGTAGTAGGGTAACAGGATGGAAATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGTAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* *
21031593 GAAAACGGTGAGCCTTAACCCTC
66 GAAGACGGTGAGCCTTAACCCCC
* ** * * * * * **
21031616 TAAACAGTAGGAAAATAGGCTGAAGATTACAGATCATATCTCCCTAAACTGTAGTGGAGTGGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * *
21031681 GAAGATGGTGAGCATTAACCCTC
66 GAAGACGGTGAGCCTTAACCCCC
* * * * **
21031704 TAACCAGTAGGGTAACAGGATGAAAATTACAGATCTTATCTCCCTAAACAGTAGTAGAGTGGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
21031769 GAAGACGGTGAGCCATAACCCCC
66 GAAGACGGTGAGCCTTAACCCCC
* *
21031792 TAAGCAGTAGGGTAACAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGACCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* *
21031857 AAACACGGTGAGCCTTAACCCCC
66 GAAGACGGTGAGCCTTAACCCCC
* * * * *
21031880 TGAGCAGTAGGGTAACAGGCTGGAAATTACAGATCTTATTTCCCTAACCAGTAGTGGAGCGGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * * *
21031945 GAACACAGTGAGCCATAACCCTAC
66 GAAGACGGTGAGCCTTAACCC-CC
** * * * *
21031969 -AAATAGTAGGGAAACAGGCTGAAGATTTCAGATCTTATCTCCCTCAA-CAGTAGTGGAG-TGCA
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAG-A
21032031 TCGAAGACGGTGAGCCTTAA-CCCC
64 TCGAAGACGGTGAGCCTTAACCCCC
* * * *
21032055 TAAGCAGTAGGGTAACAGGCTAAAAATTACAGATTTTATCTCCCTAAGCAATAGTGGGGCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* *
21032120 GAAGACAGTGAGTCTTAACCCCC
66 GAAGACGGTGAGCCTTAACCCCC
* * *
21032143 TAAGCAGTAGGCTAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
**
21032208 GAAGATAGTGAGCCTTAACCCCC
66 GAAGACGGTGAGCCTTAACCCCC
* * * ** * * **
21032231 TAAACAGTAGAGAAACAGGCTGAGGATTATAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
21032296 GAAGACGGTGAGCCTTAACACCC
66 GAAGACGGTGAGCCTTAACCCCC
* * *
21032319 TAAGCAGTAGGGTAATAGGCTGAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* *
21032384 GAACACAGTGAGCCTTAA-CCCC
66 GAAGACGGTGAGCCTTAACCCCC
* *
21032406 TGAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGAT
1 T-AAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* **
21032471 CGAACATAGTGAGCCTTAACCCCC
65 CGAAGACGGTGAGCCTTAACCCCC
* * * * *
21032495 GAAGCAGTAGGGTAACAGGCTAAAAACTACAGATCTTATCTCCTTAAGAAGTAGTGGAGCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
21032560 GAACACGGTGAGCCTTAA-CCCC
66 GAAGACGGTGAGCCTTAACCCCC
* * * * * *
21032582 TAAGTAGAAGGGTAGCAGGCTGGAAATTACAGATCTTATCTCCTTAAGCTA-TAGTGGTGCAGAT
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGC-AGTAGTGGAGCAGAT
* **
21032646 CGAACACGGTGAGCCTTAACCCTT
65 CGAAGACGGTGAGCCTTAACCCCC
* * * * *
21032670 TAAGTAATAGGGTAATAGGCT-AGAAATTACAGATCTTATTTCCCTAAGCAGTAGTGGAGCGGAT
1 TAAGCAGTAGGGTAACAGGCTGA-AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * * *
21032734 CAAAGACAGTGAGCCTGAACCACC
65 CGAAGACGGTGAGCCTTAACCCCC
** * * *
21032758 TAAATAGTAGGGAAACAGGCT-AAAGATTACAGATCTTATCTCCCTAAACAGTAGTGGAG-TGAA
1 TAAGCAGTAGGGTAACAGGCTGAAA-ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG-A
*
21032821 TCGAAGACGGTGAGCCTTATCCCCC
64 TCGAAGACGGTGAGCCTTAACCCCC
* * * *
21032846 TAAGCAATAGGGTAACAGGCT-AAAAGTTACAGATCTTATATCCCTAAGTAGTAGCGGAGCAGAT
1 TAAGCAGTAGGGTAACAGGCTGAAAA-TTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* *
21032910 TGAACACGGTGAGCCTTAACCCCC
65 CGAAGACGGTGAGCCTTAACCCCC
* * **
21032934 TAAGCAGTAGGGTAACAGGCTGGAAATTACAGATCTTCTCTCCCTAAGCAGTAGTAAAGCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
21032999 GAACACGGTGAGCCTTAACCCCC
66 GAAGACGGTGAGCCTTAACCCCC
* * * *
21033022 TAAGTAGTAGGGTAACAGGCTGGAAATTACAGATCTTATCGCCTTAAGCAGTAGTGGAGCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* *
21033087 AAAGACGGTGAGCCTTAACCTCC
66 GAAGACGGTGAGCCTTAACCCCC
* * * *
21033110 TAAGCAGTAGGGTAACAGGATGGAAATTACAGATCTTATCTCCCTAAGCAGTAGAGGAGTAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
21033175 GAAGACGGTGAGCCTTAACCCCC
66 GAAGACGGTGAGCCTTAACCCCC
* *
21033198 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCACTAAGTAGTAGTGGAGCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
**
21033263 GAAGACGGTGAGCCCCAACCCCC
66 GAAGACGGTGAGCCTTAACCCCC
* *
21033286 TAAGCAATAGGGTAACAGGCTGAAAATTACAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * * * *
21033351 AAAGAGGGTAAGCCTTGACCCCT
66 GAAGACGGTGAGCCTTAACCCCC
* **
21033374 TAAGCAGTAGGGTAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
** * *
21033439 GAAGATAGTGAGCCTTATCTCCC
66 GAAGACGGTGAGCCTTAACCCCC
* * ** * * * *
21033462 TGAGCAGCAGTGG-AGTAGGCTGAAGATTACAAATCATATCTCCCTAAGCAGTAGTGGAGTAGAT
1 TAAGCAGTAG-GGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
21033526 TGAAATGAAA
Statistics
Matches: 2036, Mismatches: 286, Indels: 52
0.86 0.12 0.02
Matches are distributed among these distances:
86 64 0.03
87 181 0.09
88 1773 0.87
89 18 0.01
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (88 bp):
TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
GAAGACGGTGAGCCTTAACCCCC
Found at i:21031529 original size:44 final size:44
Alignment explanation
Indices: 21031305--21031625 Score: 141
Period size: 44 Copynumber: 7.3 Consensus size: 44
21031295 GATCTTATCT
* *
21031305 CCCTAAGCAGTAGTGGAGCAGATCGAACACGGTGAGCCTTAA-C
1 CCCTAAGCAGTAGTGGAACAGATCGAACACGATGAGCCTTAACC
* * * * * *
21031348 CCCTAAAGCAGTAG-GGTAACAG-GCTAA-A-AATTA-CATTTCTTATCT
1 CCCT-AAGCAGTAGTGG-AACAGATCGAACACGATGAGC----CTTAACC
*
21031393 CCCTAAGCAGTAGTGGAATAGA-CTGAACACGATGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAACAGATC-GAACACGATGAGCCTTAACC
* * * * * * *
21031437 CCCGAAGCAGTAG-GGTAACAGGCTAGAAATTAC-A-GA-TCTTATCT
1 CCCTAAGCAGTAGTGG-AACA-GATCG-AA-CACGATGAGCCTTAACC
21031481 CCCTAAGCAGTAGTGGAACAGATCGAACACGATGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAACAGATCGAACACGATGAGCCTTAACC
* * * * * *
21031525 CCCTAAGTAGTAG-GGTAACAGGATGGAAATTAC-A-GA-TCTTATCT
1 CCCTAAGCAGTAGTGG-AACA-GATCG-AA-CACGATGAGCCTTAACC
* ** * *
21031569 CCCTAAGAAGTAGTGGAGTAGATCGAAAACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAACAGATCGAACACGATGAGCCTTAACC
* *
21031613 CTCTAAACAGTAG
1 CCCTAAGCAGTAG
21031626 GAAAATAGGC
Statistics
Matches: 201, Mismatches: 47, Indels: 59
0.65 0.15 0.19
Matches are distributed among these distances:
40 1 0.00
41 6 0.03
42 6 0.03
43 24 0.12
44 127 0.63
45 22 0.11
46 7 0.03
47 7 0.03
48 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (44 bp):
CCCTAAGCAGTAGTGGAACAGATCGAACACGATGAGCCTTAACC
Found at i:21032101 original size:44 final size:44
Alignment explanation
Indices: 21032052--21032196 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 44
21032042 GAGCCTTAAC
*
21032052 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATTTTATCT
1 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCT
* ** * * * * * * *
21032096 CCCTAAGCAATAGTGG-GGCAGATCGAAGACAGT-GAG-TCTTAACC
1 CCCTAAGCAGTAG-GGTAACAG-GCTAA-AAATTACAGATCTTATCT
* **
21032140 CCCTAAGCAGTAGGCTAACAGGCTGGAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCT
21032184 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
21032197 TGGAGCGGAT
Statistics
Matches: 71, Mismatches: 24, Indels: 12
0.66 0.22 0.11
Matches are distributed among these distances:
42 3 0.04
43 4 0.06
44 54 0.76
45 7 0.10
46 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCT
Found at i:21032232 original size:44 final size:44
Alignment explanation
Indices: 21032096--21032504 Score: 144
Period size: 44 Copynumber: 9.3 Consensus size: 44
21032086 GATTTTATCT
* ** * *
21032096 CCCTAAGCAATAGTGGGGCAGATCGAAGACAGTGAGTCTTAACC
1 CCCTAAGCAGTAGTGGAACGGATCGAAGATAGTGAGTCTTAACC
* * * ** * *
21032140 CCCTAAGCAGTAG-GCTAACAGGCTGGAA-ATTACAGA-TCTTATCT
1 CCCTAAGCAGTAGTG-GAAC-GGATCGAAGA-TAGTGAGTCTTAACC
* *
21032184 CCCTAAGCAGTAGTGGAGCGGATCGAAGATAGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAACGGATCGAAGATAGTGAGTCTTAACC
* * * * * * *
21032228 CCCTAAACAGTAGAGAAACAGGCT-GAGGATTA-T-AGATCTTATCT
1 CCCTAAGCAGTAGTGGAAC-GGATCGAAGA-TAGTGAG-TCTTAACC
* ** ** * *
21032272 CCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACA
1 CCCTAAGCAGTAGTGGAACGGATCGAAGATAGTGAGTCTTAACC
* * * * *
21032316 CCCTAAGCAGTAG-GGTAATAGGCT-GAAAATTA-T-AGATCTTATCT
1 CCCTAAGCAGTAGTGG-AA-CGGATCGAAGA-TAGTGAG-TCTTAACC
* * * *
21032360 CCCTAAGCAGTAGTGGAACAGATCGAACACAGTGAGCCTTAA-C
1 CCCTAAGCAGTAGTGGAACGGATCGAAGATAGTGAGTCTTAACC
* * * ** * *
21032403 CCCTGAAGCAGTAG-GGTAACAGGCT-AAAAATTACAGA-TCTTATCT
1 CCCT-AAGCAGTAGTGG-AAC-GGATCGAAGA-TAGTGAGTCTTAACC
* * * * *
21032448 CCCTAAGTAGTAGTGGAGCAGATCGAACATAGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAACGGATCGAAGATAGTGAGTCTTAACC
*
21032492 CCCGAAGCAGTAG
1 CCCTAAGCAGTAG
21032505 GGTAACAGGC
Statistics
Matches: 255, Mismatches: 82, Indels: 56
0.65 0.21 0.14
Matches are distributed among these distances:
43 35 0.14
44 186 0.73
45 34 0.13
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (44 bp):
CCCTAAGCAGTAGTGGAACGGATCGAAGATAGTGAGTCTTAACC
Done.