Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 68 of 344
Found at i:22042164 original size:22 final size:26
Alignment explanation
Indices: 22042124--22042171 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 26
22042114 ACTTTTTATG
22042124 TATTATTTTTTTCATAAATTT-AAAA
1 TATTATTTTTTTCATAAATTTCAAAA
22042149 TATTA-TTTTTT-A-AAATTTCAAAA
1 TATTATTTTTTTCATAAATTTCAAAA
22042172 CACATAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 5 0.23
24 6 0.27
25 5 0.23
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (26 bp):
TATTATTTTTTTCATAAATTTCAAAA
Found at i:22042775 original size:22 final size:23
Alignment explanation
Indices: 22042730--22042776 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
22042720 TTTACATATA
*
22042730 TATTTTGAATTTTTAGAATTTTT
1 TATTTTGAATTTTTAGAATATTT
22042753 TATTTT-AACTTTTTA-AATATTT
1 TATTTTGAA-TTTTTAGAATATTT
22042775 TA
1 TA
22042777 ACATAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (23 bp):
TATTTTGAATTTTTAGAATATTT
Found at i:22051606 original size:25 final size:26
Alignment explanation
Indices: 22051578--22051634 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
22051568 CCAATTTTGG
*
22051578 CCCAAACCAACAAACCAAAAA-TAAA
1 CCCAAACCAACAAACCAAAAACAAAA
*
22051603 CCCAAACCAATAAACCAAAAACAAAA
1 CCCAAACCAACAAACCAAAAACAAAA
22051629 CCCAAA
1 CCCAAA
22051635 ATACAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 20 0.69
26 9 0.31
ACGTcount: A:0.63, C:0.33, G:0.00, T:0.04
Consensus pattern (26 bp):
CCCAAACCAACAAACCAAAAACAAAA
Found at i:22051616 original size:14 final size:14
Alignment explanation
Indices: 22051578--22051618 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
22051568 CCAATTTTGG
*
22051578 CCCAAACCAACAAA
1 CCCAAACCAATAAA
22051592 -CCAAA--AATAAA
1 CCCAAACCAATAAA
22051603 CCCAAACCAATAAA
1 CCCAAACCAATAAA
22051617 CC
1 CC
22051619 AAAAACAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 5 0.22
12 5 0.22
13 5 0.22
14 8 0.35
ACGTcount: A:0.59, C:0.37, G:0.00, T:0.05
Consensus pattern (14 bp):
CCCAAACCAATAAA
Found at i:22054595 original size:13 final size:14
Alignment explanation
Indices: 22054572--22054600 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
22054562 TGTTTTAAAC
22054572 TTACGATCATTTCA
1 TTACGATCATTTCA
22054586 TTAC-ATCATTTCA
1 TTACGATCATTTCA
22054599 TT
1 TT
22054601 GCATATCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.28, C:0.21, G:0.03, T:0.48
Consensus pattern (14 bp):
TTACGATCATTTCA
Found at i:22057318 original size:19 final size:20
Alignment explanation
Indices: 22057291--22057333 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
22057281 TCTTTTTGCA
* *
22057291 TTCATTCATTTGCATTACAT
1 TTCATTCATATGCATTAAAT
22057311 TTCA-TCATATGCATTAAAT
1 TTCATTCATATGCATTAAAT
22057330 TTCA
1 TTCA
22057334 CGAAAAGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.47
Consensus pattern (20 bp):
TTCATTCATATGCATTAAAT
Found at i:22070603 original size:17 final size:17
Alignment explanation
Indices: 22070581--22070614 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22070571 AGAATAATTC
22070581 ATAAACTTAACCATGCT
1 ATAAACTTAACCATGCT
22070598 ATAAACTTAACCATGCT
1 ATAAACTTAACCATGCT
22070615 CCTTTGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (17 bp):
ATAAACTTAACCATGCT
Found at i:22070875 original size:43 final size:43
Alignment explanation
Indices: 22070817--22070965 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 43
22070807 CAATGCCGAC
* * *
22070817 GTCCCAGACATGGTCTTACATGTAATTCGATATCGATGCCTTT
1 GTCCCAGACAAGGTCTTACACGTAATTCGATATCGATGCCTAT
* *
22070860 GTCCCAGACAAGGTCTTACACG-AAATCAGATA-CGATGCCGAT
1 GTCCCAGACAAGGTCTTACACGTAATTC-GATATCGATGCCTAT
* * * * * *
22070902 GTCCCAGACATGGTCTTATACGTAAATCTC-AAATCAAAGCCTGT
1 GTCCCAGACAAGGTCTTACACGT-AAT-TCGATATCGATGCCTAT
22070946 GTCCCAGACACA-GTCTTACA
1 GTCCCAGACA-AGGTCTTACA
22070966 TGATATTTCA
Statistics
Matches: 85, Mismatches: 15, Indels: 11
0.77 0.14 0.10
Matches are distributed among these distances:
42 32 0.38
43 26 0.31
44 25 0.29
45 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
GTCCCAGACAAGGTCTTACACGTAATTCGATATCGATGCCTAT
Found at i:22070909 original size:42 final size:43
Alignment explanation
Indices: 22070809--22070929 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 43
22070799 AACAAGTACA
* * *
22070809 ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCGATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCGATATCG
** *
22070852 ATGCCTTTGTCCCAGACAAGGTCTTACACG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATC-GATATCG
*
22070894 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATC
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATC
22070930 TCAAATCAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCGATATCG
Found at i:22072698 original size:8 final size:8
Alignment explanation
Indices: 22072685--22072712 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
22072675 GGTTTATGAT
22072685 ATGATTTC
1 ATGATTTC
22072693 ATGATTTC
1 ATGATTTC
22072701 ATGATTTC
1 ATGATTTC
22072709 ATGA
1 ATGA
22072713 AAATTTCGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (8 bp):
ATGATTTC
Found at i:22076520 original size:54 final size:54
Alignment explanation
Indices: 22076326--22076737 Score: 244
Period size: 54 Copynumber: 7.6 Consensus size: 54
22076316 ATTACTGAAA
* * *
22076326 TACCTTCGATTTTGTAAAATTACTGAAATACTCCTGTAA--GATAGAATTACCATTT
1 TACCCTCGA-TTTATAAAATTACTGAAATAC-CCT-TAATTTATAGAATTACCATTT
* * *** **
22076381 TACCCTCGATTGATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTGAAATACCCTTAATTTATAGAATTACCATTT
* * * * *** *
22076435 CACCCTCGATTTTTAGAATTACCGTCTTACCCTTAATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTGAAATACCCTTAATTTATAGAATTACCATTT
* * ** * * * ***
22076489 TACCCTCGATTTACAAAATTATTGAAATACCCTTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTGAAATACCCTTAATTTATAGAATTACCATTT
* * * * * * * **
22076543 TACCC-CTGGTTTGTAAAATTACTAAAATACCCCCTAATTTGTAAAATTACTGA-AA
1 TACCCTC-GATTTATAAAATTACTGAAATA-CCCTTAATTTATAGAATTAC-CATTT
* * **
22076598 TACCCTCGACTTGTA-AAAATTAC-CAAAGTACTCTTAATTTATAGAATTACTGTTT
1 TACCCTCGA-TT-TATAAAATTACTGAAA-TACCCTTAATTTATAGAATTACCATTT
* *** * * *
22076653 TACCCTCGATTTACAAAATTACTGTTTTACCCTTAATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGAAATACCCTTAATTTATAGAATTACCATTT
* *
22076707 TACCCTCGA-TTGTGAAATTACTGAAATACCC
1 TACCCTCGATTTATAAAATTACTGAAATACCC
22076738 CTATAGGGTA
Statistics
Matches: 275, Mismatches: 70, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
52 1 0.00
53 22 0.08
54 176 0.64
55 61 0.22
56 14 0.05
57 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTGAAATACCCTTAATTTATAGAATTACCATTT
Found at i:22076585 original size:28 final size:28
Alignment explanation
Indices: 22076525--22076602 Score: 122
Period size: 28 Copynumber: 2.8 Consensus size: 28
22076515 ATACCCTTGG
**
22076525 TTTGTAAAATTACTAAAATA-CCCCTGG
1 TTTGTAAAATTACTAAAATACCCCCTAA
22076552 TTTGTAAAATTACTAAAATACCCCCTAA
1 TTTGTAAAATTACTAAAATACCCCCTAA
*
22076580 TTTGTAAAATTACTGAAATACCC
1 TTTGTAAAATTACTAAAATACCC
22076603 TCGACTTGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 20 0.43
28 27 0.57
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (28 bp):
TTTGTAAAATTACTAAAATACCCCCTAA
Found at i:22076616 original size:28 final size:27
Alignment explanation
Indices: 22076206--22076900 Score: 190
Period size: 27 Copynumber: 25.7 Consensus size: 27
22076196 TTAGTTTACC
* * *
22076206 AAATTACTGAAATACCCTTGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * *
22076233 AAATTACCAAAGTACCCCCAATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
** *
22076260 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
22076287 AAATTACCAAAATACCCTC-AGTTTGCA
1 AAATTACTAAAATACCCTCGA-TTTGTA
* *
22076314 AAATTACTGAAATACCTTCGATTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTGTA
* **
22076342 AAATTACTGAAATACTCCT-G-TAAGATA
1 AAATTACTAAAATAC-CCTCGATTTG-TA
* * ***
22076369 GAATTACCATTTTACCCTCGA-TTGATA
1 AAATTACTAAAATACCCTCGATTTG-TA
* **** *
22076396 GAATTACTGTTTTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* * ** *
22076423 GAATTAC-CATTTCACCCTCGATTTTTA
1 AAATTACTAAAAT-ACCCTCGATTTGTA
* ***** ** **
22076450 GAATTACCGTCTTACCCTTAATTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *** **
22076477 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * *
22076504 AAATTATTGAAATACCCTTGGTTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
22076531 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
* *
22076558 AAATTACTAAAATACCCCCTAATTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
* *
22076586 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACTAAAATACCCTCGATTTGT-A
* * * ** *
22076614 AAATTACCAAAGTACTCTTAATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* **** **
22076641 GAATTACTGTTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
**** ** **
22076668 AAATTACTGTTTTACCCTTAATTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
***** *
22076695 AAATTACCGTTTTACCCTCGA-TTGTG
1 AAATTACTAAAATACCCTCGATTTGTA
* * **
22076721 AAATTACTGAAATACCC-CTATAGGGTA
1 AAATTACTAAAATACCCTCGAT-TTGTA
* * * * *
22076748 GAATTACCAAAACACCC-CTAGTTTGTG
1 AAATTACTAAAATACCCTCGA-TTTGTA
* * *
22076775 AAATTACCAAAATACCACTTG-TTTGTG
1 AAATTACTAAAATACC-CTCGATTTGTA
* * *
22076802 AAATTACTGAAATACCTTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* **
22076829 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACTAAAATACCCTC-GATTTGTA
*
22076856 AAATTA-TAGAAATACCCTTGATTTGTA
1 AAATTACTA-AAATACCCTCGATTTGTA
* * * *
22076883 GATTTACCAAAACACCCT
1 AAATTACTAAAATACCCT
22076901 TATAGGATGA
Statistics
Matches: 510, Mismatches: 136, Indels: 44
0.74 0.20 0.06
Matches are distributed among these distances:
25 2 0.00
26 27 0.05
27 406 0.80
28 73 0.14
29 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:22076940 original size:27 final size:27
Alignment explanation
Indices: 22076888--22076942 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
22076878 TTGTAGATTT
* *
22076888 ACCAAAACACCCTTATAGGATGAAAAG
1 ACCAAAACACCCTAATAGGATAAAAAG
*
22076915 ACCAAAATACCCCTAATAGG-TAAAAAG
1 ACCAAAACA-CCCTAATAGGATAAAAAG
22076942 A
1 A
22076943 TTGTAAAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.51, C:0.22, G:0.13, T:0.15
Consensus pattern (27 bp):
ACCAAAACACCCTAATAGGATAAAAAG
Found at i:22077729 original size:20 final size:20
Alignment explanation
Indices: 22077696--22077770 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
22077686 ATACGTGGGA
22077696 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
22077713 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
* *
22077734 TATAAAATGCACATGATATG
1 TATGATATGCACATGATATG
22077754 TATGA-ATTGCACATGAT
1 TATGATA-TGCACATGAT
22077771 GTATTCATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.16
19 1 0.02
20 39 0.78
21 2 0.04
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:22077917 original size:25 final size:26
Alignment explanation
Indices: 22077820--22077993 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
22077810 GAGGAAGTGC
*
22077820 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
22077846 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
22077872 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22077898 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22077923 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
22077949 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22077974 AAAAGGACTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
22077994 ATTAAAAGAG
Statistics
Matches: 139, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
25 55 0.40
26 84 0.60
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:22077933 original size:51 final size:51
Alignment explanation
Indices: 22077820--22078006 Score: 290
Period size: 51 Copynumber: 3.7 Consensus size: 51
22077810 GAGGAAGTGC
22077820 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTATCG
* *
22077872 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTATCG
**
22077923 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTATCG
*
22077974 AAAAGGACTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
22078007 AGGCCTCCAG
Statistics
Matches: 125, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
48 5 0.04
49 7 0.06
50 8 0.06
51 70 0.56
52 35 0.28
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTATCG
Found at i:22078204 original size:42 final size:42
Alignment explanation
Indices: 22078140--22078230 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
22078130 AGTCTCCCCC
* * ** *
22078140 AATGGGCTTGTATACATTCATTGGTATTTCATATGATATTGA
1 AATGGGCTTGCATACATCCATTGACATTACATATGATATTGA
*
22078182 AATGGGCTTGCATACATCCATTGACATTACATGTGATATTGA
1 AATGGGCTTGCATACATCCATTGACATTACATATGATATTGA
22078224 AATGGGC
1 AATGGGC
22078231 CTATGGGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AATGGGCTTGCATACATCCATTGACATTACATATGATATTGA
Found at i:22078359 original size:31 final size:31
Alignment explanation
Indices: 22078254--22078355 Score: 177
Period size: 31 Copynumber: 3.3 Consensus size: 31
22078244 CGTTTACAGT
* *
22078254 AAAGGCTTCAGCCCAGTGAAATGATTTATGG
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
22078285 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
22078316 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
22078347 AAAGGCTTC
1 AAAGGCTTC
22078356 GGCCTAGTAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:22082430 original size:36 final size:36
Alignment explanation
Indices: 22082390--22082462 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
22082380 TTGAAGAGAT
22082390 AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
1 AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
22082426 AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
1 AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
22082462 A
1 A
22082463 TTAGCTTGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.48, C:0.05, G:0.27, T:0.19
Consensus pattern (36 bp):
AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
Found at i:22091063 original size:50 final size:50
Alignment explanation
Indices: 22090944--22091237 Score: 329
Period size: 50 Copynumber: 5.8 Consensus size: 50
22090934 GTTGTGAGAA
* * ** *
22090944 CACATGTCTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGT
*
22090996 CACATGTGTAGTACTAAGTGCAGGCTTCTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * * *
22091046 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGATTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* * * * *
22091097 CACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * *
22091147 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* **
22091197 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
22091238 GAGCTTCGGT
Statistics
Matches: 203, Mismatches: 37, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
49 3 0.01
50 130 0.64
51 39 0.19
52 31 0.15
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:22091132 original size:101 final size:100
Alignment explanation
Indices: 22090990--22091226 Score: 321
Period size: 101 Copynumber: 2.4 Consensus size: 100
22090980 TAAGACGGTT
* * * * *
22090990 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTTCTATGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGT
* **
22091055 AGTACTAAGTGTAGGCTACTATGCGTACCCGATAG
66 AGTACTAAGTGTAGGCTACTACGCGTACCAAATAG
* * * *
22091090 ATTCGATCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTG
1 -TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTG
* *
22091155 TAGTACTAAGTGTAGGCTACTACGTGTACCAAATTG
65 TAGTACTAAGTGTAGGCTACTACGCGTACCAAATAG
* *
22091191 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTA
22091227 TGCATACCAG
Statistics
Matches: 117, Mismatches: 19, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
100 31 0.26
101 86 0.74
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGT
AGTACTAAGTGTAGGCTACTACGCGTACCAAATAG
Found at i:22091272 original size:151 final size:151
Alignment explanation
Indices: 22090990--22091272 Score: 404
Period size: 151 Copynumber: 1.9 Consensus size: 151
22090980 TAAGACGGTT
* * *
22090990 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTTCTATGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCGCATGTGT
* * * * ** * * *
22091055 AGTACTAAGTGTAGGCTACTATGCGTACCCGATAGATTCGATCACGTGTGTAGTACTAAATGCAG
66 AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGATTCGATCACAAGGGTAGTAATAAATACAG
22091120 GCTACTACGTGTATCAGATGG
131 GCTACTACGTGTATCAGATGG
*
22091141 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCGCATGTGT
* * * * *
22091206 AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGCTTCGGTTACAAGGGTGGTAATATATACAG
66 AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGATTCGATCACAAGGGTAGTAATAAATACAG
22091271 GC
131 GC
22091273 CACCGGGTAT
Statistics
Matches: 114, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
151 114 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (151 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGATTCGATCACAAGGGTAGTAATAAATACAG
GCTACTACGTGTATCAGATGG
Found at i:22094283 original size:25 final size:25
Alignment explanation
Indices: 22094235--22094283 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
22094225 TGATAATATG
* * * *
22094235 AAAAATGACTATTTTTCCCTTAGGT
1 AAAAATGACCATTATACCCCTAGGT
22094260 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
22094284 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:22094346 original size:11 final size:10
Alignment explanation
Indices: 22094314--22094369 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 10
22094304 CACGAGATTT
22094314 TGATAT-ACA
1 TGATATGACA
*
22094323 TGATTTGACA
1 TGATATGACA
22094333 TGATATGCACA
1 TGATATG-ACA
*
22094344 TGATATG-TA
1 TGATATGACA
*
22094353 TGAAATGCACA
1 TGATATG-ACA
22094364 TGATAT
1 TGATAT
22094370 ATTCATATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 12 0.32
10 9 0.24
11 16 0.43
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (10 bp):
TGATATGACA
Found at i:22094360 original size:20 final size:20
Alignment explanation
Indices: 22094332--22094369 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22094322 ATGATTTGAC
*
22094332 ATGATATGCACATGATATGT
1 ATGAAATGCACATGATATGT
22094352 ATGAAATGCACATGATAT
1 ATGAAATGCACATGATAT
22094370 ATTCATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGAAATGCACATGATATGT
Found at i:22094472 original size:24 final size:25
Alignment explanation
Indices: 22094415--22094483 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
22094405 GAGGAAGTGA
*
22094415 AAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
22094440 AAAAGGGCTTTGCCCCAGTTTACC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
22094464 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
22094484 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
24 20 0.47
25 23 0.53
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:22096187 original size:40 final size:40
Alignment explanation
Indices: 22096104--22096366 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
22096094 TTGAATGCTG
* * * * * *
22096104 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
22096144 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
22096184 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
22096224 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
22096264 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22096304 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22096343 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22096367 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:22096386 original size:79 final size:80
Alignment explanation
Indices: 22096143--22096401 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
22096133 AAGTGAATAT
* * * * * *
22096143 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
22096207 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
22096223 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
22096288 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
22096303 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
22096367 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
22096382 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
22096402 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:22098589 original size:54 final size:54
Alignment explanation
Indices: 22098507--22098618 Score: 188
Period size: 54 Copynumber: 2.1 Consensus size: 54
22098497 GTAAACGCAT
* *
22098507 GGGCAGAGACACGACCGTGTGTCCCAGCCGTGTGAAGGACACGGCCTAGAACAC
1 GGGCAGAGACACGACCATGTGTCCCAGCCATGTGAAGGACACGGCCTAGAACAC
* *
22098561 GGGCAGAGACACGACCATGTGTCTCAGCCATGTGAAGGACACGGCCTAGCACAC
1 GGGCAGAGACACGACCATGTGTCCCAGCCATGTGAAGGACACGGCCTAGAACAC
22098615 GGGC
1 GGGC
22098619 TTGTGCCTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.26, C:0.29, G:0.33, T:0.12
Consensus pattern (54 bp):
GGGCAGAGACACGACCATGTGTCCCAGCCATGTGAAGGACACGGCCTAGAACAC
Found at i:22099310 original size:20 final size:20
Alignment explanation
Indices: 22099287--22099340 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
22099277 AAACCCCTTT
*
22099287 CATTTACTTACTTTTCATTG
1 CATTTACTTACTTTCCATTG
22099307 CATTTACTTACTTTCCATTG
1 CATTTACTTACTTTCCATTG
*
22099327 CATTTACTTTCTTT
1 CATTTACTTACTTT
22099341 AACTCAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.22, G:0.04, T:0.56
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTG
Found at i:22105438 original size:20 final size:20
Alignment explanation
Indices: 22105414--22105487 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 20
22105404 GAACCCCTTT
*
22105414 CATTTACTTACTTTTCATTG
1 CATTTACTTACTTTCCATTG
* *
22105434 TATTTACTTACTGTCCATTG
1 CATTTACTTACTTTCCATTG
* *
22105454 CATTTACATACTTGCCATTG
1 CATTTACTTACTTTCCATTG
*
22105474 CATTTACTTTCTTT
1 CATTTACTTACTTT
22105488 ATCTCAAATA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.20, C:0.22, G:0.07, T:0.51
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTG
Found at i:22115745 original size:40 final size:42
Alignment explanation
Indices: 22115667--22115745 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
22115657 ACAGGGGTTT
22115667 TCACACGGCCTGACACATGCTCGTGTCTATAGCCTGTGTCCC
1 TCACACGGCCTGACACATGCTCGTGTCTATAGCCTGTGTCCC
* *
22115709 TCACACGGCCATGACACGT-C-CGTGTC-CTAGCCTGTGT
1 TCACACGGCC-TGACACATGCTCGTGTCTATAGCCTGTGT
22115746 ATAAAAACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 10 0.29
41 6 0.18
42 11 0.32
43 7 0.21
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.25
Consensus pattern (42 bp):
TCACACGGCCTGACACATGCTCGTGTCTATAGCCTGTGTCCC
Found at i:22120097 original size:47 final size:47
Alignment explanation
Indices: 22119979--22120106 Score: 158
Period size: 46 Copynumber: 2.7 Consensus size: 47
22119969 GGATGGTTGA
*
22119979 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
22120027 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
22120070 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
22120107 TAAGGGCGGG
Statistics
Matches: 70, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:22136260 original size:16 final size:16
Alignment explanation
Indices: 22136239--22136270 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22136229 TCAGTTAAAA
22136239 AAAGTAGAGAGTTGGT
1 AAAGTAGAGAGTTGGT
22136255 AAAGTAGAGAGTTGGT
1 AAAGTAGAGAGTTGGT
22136271 GGACTCTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.25
Consensus pattern (16 bp):
AAAGTAGAGAGTTGGT
Found at i:22137452 original size:27 final size:27
Alignment explanation
Indices: 22137414--22137473 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
22137404 TCAGAGTCAG
*
22137414 TAAACATGGGATAGTCCA-CTGAGACGA
1 TAAACATGGGATAATCCATC-GAGACGA
*
22137441 TAAACATGGGATAATCCATCGAGACGG
1 TAAACATGGGATAATCCATCGAGACGA
22137468 TAAACA
1 TAAACA
22137474 CAGGAGAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.18
Consensus pattern (27 bp):
TAAACATGGGATAATCCATCGAGACGA
Found at i:22143972 original size:24 final size:23
Alignment explanation
Indices: 22143938--22143983 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
22143928 TCGACAGCCT
*
22143938 ACTTTTCAGCTTTTTGGCTTTTCG
1 ACTTTTCAGCTTTTCGG-TTTTCG
*
22143962 ACTTTTTAGCTTTTCGGTTTTC
1 ACTTTTCAGCTTTTCGGTTTTC
22143984 AGCTTTTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.09, C:0.20, G:0.15, T:0.57
Consensus pattern (23 bp):
ACTTTTCAGCTTTTCGGTTTTCG
Found at i:22143982 original size:15 final size:16
Alignment explanation
Indices: 22143947--22143990 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
22143937 TACTTTTCAG
*
22143947 CTTTTTGGCTTTTCGA
1 CTTTTTAGCTTTTCGA
22143963 CTTTTTAGCTTTTCG-
1 CTTTTTAGCTTTTCGA
* *
22143978 GTTTTCAGCTTTT
1 CTTTTTAGCTTTT
22143991 GCTATTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.07, C:0.18, G:0.16, T:0.59
Consensus pattern (16 bp):
CTTTTTAGCTTTTCGA
Found at i:22151179 original size:17 final size:17
Alignment explanation
Indices: 22151157--22151192 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
22151147 TAATTAATTT
*
22151157 ATCCTTTAAAGTATTAA
1 ATCCTTTAAAGTACTAA
22151174 ATCCTTTAAAGTACTAA
1 ATCCTTTAAAGTACTAA
22151191 AT
1 AT
22151193 GCTTCTGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.39
Consensus pattern (17 bp):
ATCCTTTAAAGTACTAA
Found at i:22162376 original size:24 final size:24
Alignment explanation
Indices: 22162340--22162405 Score: 123
Period size: 24 Copynumber: 2.7 Consensus size: 24
22162330 CCTACCCAAT
22162340 CCAACCTCTACACACCATCTCCGTA
1 CCAACC-CTACACACCATCTCCGTA
22162365 CCAACCCTACACACCATCTCCGTA
1 CCAACCCTACACACCATCTCCGTA
22162389 CCAACCCTACACACCAT
1 CCAACCCTACACACCAT
22162406 GTGGGGATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 35 0.85
25 6 0.15
ACGTcount: A:0.30, C:0.50, G:0.03, T:0.17
Consensus pattern (24 bp):
CCAACCCTACACACCATCTCCGTA
Found at i:22171441 original size:19 final size:19
Alignment explanation
Indices: 22171417--22171458 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
22171407 AAAAACTCAG
22171417 AATAATAAGATAATAAA-AT
1 AATAATAA-ATAATAAATAT
*
22171436 AATAATAACTAATAAATAT
1 AATAATAAATAATAAATAT
22171455 AATA
1 AATA
22171459 TTGGGCTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
AATAATAAATAATAAATAT
Found at i:22181433 original size:47 final size:47
Alignment explanation
Indices: 22181379--22181967 Score: 888
Period size: 47 Copynumber: 12.6 Consensus size: 47
22181369 TATTTGAATA
*
22181379 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22181426 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22181473 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22181520 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22181569 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
22181616 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22181663 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22181712 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22181759 AATGTGAAAGTGTATATATATGTGATAAGGCCT-AT----G-TG-G-TG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22181800 AATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22181847 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
22181894 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22181941 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22181968 TCCCGAAGGG
Statistics
Matches: 499, Mismatches: 29, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
39 18 0.04
40 2 0.00
41 14 0.03
42 1 0.00
43 2 0.00
44 1 0.00
45 2 0.00
46 1 0.00
47 349 0.70
48 2 0.00
49 107 0.21
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22181566 original size:96 final size:94
Alignment explanation
Indices: 22181379--22181967 Score: 888
Period size: 96 Copynumber: 6.3 Consensus size: 94
22181369 TATTTGAATA
*
22181379 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
22181444 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
22181473 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* *
22181538 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
22181569 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
22181634 TGTGATAAGGTCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
22181663 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
22181728 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
22181759 AATGTGAAAGTGTATATATATGTGATAAGGCCT-AT----G-TG-G-TGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
22181816 TATGTGATAAGACCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22181847 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
22181912 TGTGATAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
22181941 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22181968 TCCCGAAGGG
Statistics
Matches: 458, Mismatches: 25, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
86 18 0.04
87 2 0.00
88 58 0.13
89 1 0.00
90 2 0.00
91 1 0.00
92 2 0.00
93 1 0.00
94 168 0.37
95 2 0.00
96 203 0.44
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:22181635 original size:143 final size:143
Alignment explanation
Indices: 22181379--22181967 Score: 936
Period size: 143 Copynumber: 4.2 Consensus size: 143
22181369 TATTTGAATA
*
22181379 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
22181442 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22181507 GGCCAATGTGATG
131 GGCCAATGTGATG
22181520 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
22181585 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAAT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22181650 GGCCAATGTGATG
131 GGCCAATGTGATG
22181663 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
22181728 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC--
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
*
22181791 -T-----ATGTGGTG
129 ATGGCCAATGTGATG
*
22181800 AATGTGAAAGTG--TATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
22181863 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
22181928 GGCCAACGTGATG
131 GGCCAATGTGATG
*
22181941 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
22181968 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 12, Indels: 28
0.91 0.03 0.06
Matches are distributed among these distances:
133 17 0.04
135 93 0.22
136 1 0.00
137 19 0.05
141 39 0.09
142 2 0.00
143 234 0.55
145 17 0.04
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:22183661 original size:40 final size:40
Alignment explanation
Indices: 22183418--22183649 Score: 374
Period size: 40 Copynumber: 5.8 Consensus size: 40
22183408 GAGAATTGAG
22183418 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
22183458 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
22183498 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
22183538 AGTGATGTATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
22183578 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
22183618 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
22183650 ATCATGCTGG
Statistics
Matches: 177, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:22187822 original size:49 final size:47
Alignment explanation
Indices: 22187644--22188288 Score: 995
Period size: 47 Copynumber: 13.6 Consensus size: 47
22187634 TATTTGAATA
22187644 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22187691 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
22187738 AATGTGAAAGTGTATATATGTGATATGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22187785 AATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
22187834 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22187881 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22187930 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
22187976 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22188023 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22188072 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22188121 AATGTGAAAGTGGATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22188168 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
22188215 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22188262 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22188289 TCCCGAAGGG
Statistics
Matches: 556, Mismatches: 35, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
46 43 0.08
47 334 0.60
49 179 0.32
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22187831 original size:96 final size:96
Alignment explanation
Indices: 22187644--22188288 Score: 1002
Period size: 96 Copynumber: 6.8 Consensus size: 96
22187634 TATTTGAATA
*
22187644 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
22187707 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
22187738 AATGTGAAAGTGTATATATGTGATATGGCCGAATGGCCAATGTGATGAATATGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
22187803 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22187834 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
22187899 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
22187930 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC-ATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
22187992 TATGTGATAAGGTCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22188023 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
22188088 TATATGTGATAAGGCCTAATGGCCGATGTGGTG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22188121 AATGTGAAAGTGGATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
22188184 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
22188215 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
22188279 -ATGTGATAAG
66 TATGTGATAAG
22188289 TCCCGAAGGG
Statistics
Matches: 510, Mismatches: 32, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
93 44 0.09
94 149 0.29
95 46 0.09
96 228 0.45
98 43 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22190814 original size:22 final size:22
Alignment explanation
Indices: 22190744--22190801 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
22190734 CCTGAGCTAA
**
22190744 TGAATAGTAAGCTCTATTGAGC
1 TGAATAGTAAGCTCTATCAAGC
* *
22190766 TAAAACAGTAAGCTCTATCAAGC
1 T-GAATAGTAAGCTCTATCAAGC
22190789 TGAATAGTAAGCT
1 TGAATAGTAAGCT
22190802 TATGCGAGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (22 bp):
TGAATAGTAAGCTCTATCAAGC
Found at i:22193431 original size:45 final size:44
Alignment explanation
Indices: 22193347--22193431 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
22193337 ATGTAATCTG
* *
22193347 AACTCATTGAGTTGTGTCTAAGTTCATGATATATGTGACATCCA
1 AACTCATTGAGTTGTGTCTAAGTTCATGACATATATGACATCCA
* * *
22193391 AACTTATTGAGTTGTGGTCTGAGTTCATGACATGTATGACA
1 AACTCATTGAGTTGT-GTCTAAGTTCATGACATATATGACA
22193432 CATGTTTTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 14 0.40
45 21 0.60
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTAAGTTCATGACATATATGACATCCA
Found at i:22195615 original size:20 final size:21
Alignment explanation
Indices: 22195590--22195631 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22195580 TAAACCAGGC
*
22195590 TTTGTA-TTTTTTTTCATCAA
1 TTTGTACTTATTTTTCATCAA
22195610 TTTGTACTTATTTTTCATCAA
1 TTTGTACTTATTTTTCATCAA
22195631 T
1 T
22195632 GAAGTATGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTGTACTTATTTTTCATCAA
Found at i:22199588 original size:29 final size:28
Alignment explanation
Indices: 22199552--22199629 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
22199542 TCATAAGATT
22199552 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
22199582 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
22199609 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
22199630 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:22199847 original size:174 final size:174
Alignment explanation
Indices: 22199582--22200083 Score: 923
Period size: 174 Copynumber: 2.9 Consensus size: 174
22199572 AAATTGTACA
* *
22199582 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
22199647 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
22199712 TTTTGGACAGCGGGAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
22199756 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
22199821 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
22199886 TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
22199930 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
22199995 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
22200060 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
22200084 ACCTTGAGTT
Statistics
Matches: 316, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 316 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:22206179 original size:119 final size:120
Alignment explanation
Indices: 22205997--22206220 Score: 303
Period size: 119 Copynumber: 1.9 Consensus size: 120
22205987 TACTCGTTCA
*
22205997 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
22206062 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
22206117 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
22206179 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAT
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGAT
22206221 ATCATTCGAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:22206221 original size:40 final size:40
Alignment explanation
Indices: 22205976--22206222 Score: 297
Period size: 40 Copynumber: 6.2 Consensus size: 40
22205966 CAGAATTTAA
** *
22205976 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22206016 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22206056 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22206096 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22206135 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
22206175 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22206215 CCGGATAT
1 CCGGATAT
22206223 CATTCGAATA
Statistics
Matches: 182, Mismatches: 18, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 136 0.75
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22213850 original size:40 final size:40
Alignment explanation
Indices: 22213813--22214035 Score: 215
Period size: 40 Copynumber: 5.7 Consensus size: 40
22213803 GCTACTCGTT
* *
22213813 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* **
22213853 CAAATG-CTTC-GGACTTAACCCGGATTTAGTATCTTACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
22213891 CAAATGCCTTCGGCACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
22213931 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
22213970 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
22214011 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22214036 CATCATTCGA
Statistics
Matches: 151, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
38 28 0.19
39 41 0.27
40 71 0.47
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22213995 original size:79 final size:78
Alignment explanation
Indices: 22213813--22214032 Score: 230
Period size: 79 Copynumber: 2.8 Consensus size: 78
22213803 GCTACTCGTT
* * * * *
22213813 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATG-CTTCGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCAG
* *
22213876 ATTTAGTATCTTACA
64 AATTAGTATCTCACA
*
22213891 CAAATGCCTTCGGCACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCAGA
1 CAAATGCCTTCGG-ACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCAGA
*
22213956 ATTAGTATCTCGCA
65 ATTAGTATCTCACA
* * * * * *
22213970 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCC
22214033 GGACATCATT
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
77 2 0.02
78 38 0.32
79 68 0.57
80 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCAGAA
TTAGTATCTCACA
Found at i:22215230 original size:56 final size:56
Alignment explanation
Indices: 22215163--22215337 Score: 323
Period size: 56 Copynumber: 3.1 Consensus size: 56
22215153 ATTAGTTTAC
*
22215163 TGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGGTT
1 TGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTT
*
22215219 TGCCCATGCTTCGTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTT
1 TGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTT
*
22215275 TGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTT
1 TGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTT
22215331 TGCCCAT
1 TGCCCAT
22215338 CATCCCTTGT
Statistics
Matches: 115, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 115 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.43
Consensus pattern (56 bp):
TGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTT
Found at i:22217135 original size:39 final size:40
Alignment explanation
Indices: 22216931--22217153 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
22216921 TTGAATGCTG
* * * * * *
22216931 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
22216971 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
22217011 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
22217051 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
22217091 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
22217130 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22217154 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:22217173 original size:79 final size:80
Alignment explanation
Indices: 22217006--22217188 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
22216996 GTGCGAGATA
* * *
22217006 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
22217071 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
22217086 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
22217150 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
22217165 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
22217189 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:22224165 original size:39 final size:40
Alignment explanation
Indices: 22223961--22224183 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
22223951 TTGAATGCTG
* * * * * *
22223961 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
22224001 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
22224041 TCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
22224081 TCCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
22224121 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
22224160 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22224184 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.22
40 114 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:22229559 original size:184 final size:184
Alignment explanation
Indices: 22229250--22229618 Score: 666
Period size: 184 Copynumber: 2.0 Consensus size: 184
22229240 TTCTCTCTGT
22229250 GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
1 GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
* *
22229315 AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATTCGGTCATGCTAAAGCTATAC
66 AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATCCGATCATGCTAAAGCTATAC
** *
22229380 TACTATTTGATAGGTACACTTGCCTTCATCATGATAATAGTTAGTTTCAAGAAC
131 TACTATTCAATAGGTACACTTGCCTTCATCAGGATAATAGTTAGTTTCAAGAAC
22229434 GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
1 GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
*
22229499 AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATCCGATCTTGCTAAAGCTATAC
66 AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATCCGATCATGCTAAAGCTATAC
* *
22229564 TACTATTCAATAGGTGCACTTTCCTTCATCAGGATAATAGTTAGTTTCAAGAAC
131 TACTATTCAATAGGTACACTTGCCTTCATCAGGATAATAGTTAGTTTCAAGAAC
22229618 G
1 G
22229619 ATTAATTATA
Statistics
Matches: 177, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
184 177 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (184 bp):
GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATCCGATCATGCTAAAGCTATAC
TACTATTCAATAGGTACACTTGCCTTCATCAGGATAATAGTTAGTTTCAAGAAC
Found at i:22242502 original size:29 final size:29
Alignment explanation
Indices: 22242468--22242527 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
22242458 CTGAGATTGT
22242468 TTCTAAAGTACTTTTAGGGCCACGAGTGC
1 TTCTAAAGTACTTTTAGGGCCACGAGTGC
22242497 TTCTAAAGTACTTTTAGGGCCACGAGTGC
1 TTCTAAAGTACTTTTAGGGCCACGAGTGC
22242526 TT
1 TT
22242528 GATTAAAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (29 bp):
TTCTAAAGTACTTTTAGGGCCACGAGTGC
Found at i:22252309 original size:27 final size:27
Alignment explanation
Indices: 22252272--22252326 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
22252262 TTTCTGAGAT
22252272 AGAAGACTGCTAGAATGGAGGTATAAA
1 AGAAGACTGCTAGAATGGAGGTATAAA
22252299 AGAAGACTGCTAGAATGGAGGTATAAA
1 AGAAGACTGCTAGAATGGAGGTATAAA
22252326 A
1 A
22252327 TATACTTCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.07, G:0.29, T:0.18
Consensus pattern (27 bp):
AGAAGACTGCTAGAATGGAGGTATAAA
Found at i:22252994 original size:301 final size:301
Alignment explanation
Indices: 22252445--22253222 Score: 1259
Period size: 301 Copynumber: 2.6 Consensus size: 301
22252435 GTGTGATAAC
*
22252445 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAATAGATATAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
*
22252510 TTTCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
66 TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
* * * *
22252575 TTATGTTAGTTTTCCTGTTGGGAGAAAGAGAACTGGTTGTTGTATGCAGCAGGTGCAGAAAAGAT
131 TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
* ** * *
22252640 AAAGAAAATGAGAAAAAGAATAAAAGAAGTGAAATATTGCCATGGCTAAAGGTTGGATGGATTGC
196 AAAGAAAATGAGAAAAAGAATAAAAGAAGTGAAATATTACCACAGCAAAAGGTTGAATGGATTGC
* *
22252705 CAACATAAATGTCATGGCAATTCCAGGATAATGCTGAGAAA
261 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
* **
22252746 TCTTGAAAAGAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTACATACTTAAGTAGATATAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
*
22252811 TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTGTGTCTTGAATGTAATT
66 TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
* *
22252876 TTATGTTATTTTTCCTATTGGGAGAAAGAGAATTGGTTGTTGTATGCAATAAGTGCAGAAAAGAT
131 TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
* * * *
22252941 GAAGAAAATGAGAAAGAGAATAAAGGAAGTGAAATATTACCACAGCAAAAGGTTGAATGGATTGT
196 AAAGAAAATGAGAAAAAGAATAAAAGAAGTGAAATATTACCACAGCAAAAGGTTGAATGGATTGC
* *
22253006 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGATAAC
261 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
*
22253047 TCTTGAAAAAAGTTATATTTATAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
* * * * *
22253112 TTGCATTTTTAAGTTACTTTTAGAACATTGCATGATAACACTTAGATTTTATCTTGAATGTAATT
66 TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAA-T
*
22253177 TTTATGTTATTTTTCCTGTTCGGAGAAAGAGAATTGGTTGTTGTAT
130 TTTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTAT
22253223 TGTAACAGCT
Statistics
Matches: 440, Mismatches: 36, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
301 395 0.90
302 45 0.10
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (301 bp):
TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
AAAGAAAATGAGAAAAAGAATAAAAGAAGTGAAATATTACCACAGCAAAAGGTTGAATGGATTGC
CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
Found at i:22253337 original size:13 final size:13
Alignment explanation
Indices: 22253319--22253343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22253309 TATGGTCTAC
22253319 GATTTCATGAAAT
1 GATTTCATGAAAT
22253332 GATTTCATGAAA
1 GATTTCATGAAA
22253344 ATTTCATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
GATTTCATGAAAT
Found at i:22254492 original size:49 final size:50
Alignment explanation
Indices: 22254410--22254585 Score: 205
Period size: 52 Copynumber: 3.5 Consensus size: 50
22254400 CTAGTGACTC
* *
22254410 AGTGCGGTACCATGTGAAGGCCACTTTGA-GAAG-AGATAGCTTGGTCACA
1 AGTGTGGTACTATGTGAAGGCCACTTT-ATGAAGAAGATAGCTTGGTCACA
*
22254459 AGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAAAATAGCTTTGGTCACA
1 AGTGTGGTACTATGTGAAGGCCACTTTATGAAG-AAGATAGC-TTGGTCACA
* * * * *
22254511 AGTGTGGTACTATGTGGAGGCCACTTTGTGAAGAAGGTAGCTTTGACTACA
1 AGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAGATAGCTTGGTC-ACA
*
22254562 A-TGGTGGTACTATGTGCAGGCCAC
1 AGT-GTGGTACTATGTGAAGGCCAC
22254586 CGGGTATCCG
Statistics
Matches: 111, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
48 1 0.01
49 29 0.26
50 5 0.05
51 36 0.32
52 40 0.36
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (50 bp):
AGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAGATAGCTTGGTCACA
Found at i:22255530 original size:10 final size:10
Alignment explanation
Indices: 22255515--22255540 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
22255505 AGCTTAGGTT
22255515 GGAGATCGTC
1 GGAGATCGTC
22255525 GGAGATCGTC
1 GGAGATCGTC
22255535 GGAGAT
1 GGAGAT
22255541 TCTATCACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.15, G:0.42, T:0.19
Consensus pattern (10 bp):
GGAGATCGTC
Found at i:22265199 original size:18 final size:16
Alignment explanation
Indices: 22265125--22265212 Score: 65
Period size: 16 Copynumber: 5.4 Consensus size: 16
22265115 TTATAAATTA
*
22265125 AAAATAAATAATATAT
1 AAAATAAATAATATTT
22265141 AATATATACAAT-ATATTT
1 AA-A-ATA-AATAATATTT
** *
22265159 AATGTAAGTAATATTT
1 AAAATAAATAATATTT
22265175 AAAATAAATAATATTTT
1 AAAATAAATAATA-TTT
*
22265192 ATAAATAAA-AAT-TTG
1 A-AAATAAATAATATTT
22265207 AAAATA
1 AAAATA
22265213 GTATAGAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
14 5 0.09
15 5 0.09
16 20 0.34
17 8 0.14
18 17 0.29
19 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAATAAATAATATTT
Found at i:22265826 original size:20 final size:21
Alignment explanation
Indices: 22265803--22265842 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
22265793 TAGGCCCACC
* *
22265803 GATATTTTTTTATT-TTTTAA
1 GATATATTTATATTGTTTTAA
22265823 GATATATTTATATTGTTTTA
1 GATATATTTATATTGTTTTA
22265843 TTTTAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (21 bp):
GATATATTTATATTGTTTTAA
Found at i:22272855 original size:17 final size:17
Alignment explanation
Indices: 22272830--22272863 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22272820 TGAATTTTGC
22272830 ATTTCGAATAACTCGAA
1 ATTTCGAATAACTCGAA
* *
22272847 ATTTTGAATAATTCGAA
1 ATTTCGAATAACTCGAA
22272864 TAACAAATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
ATTTCGAATAACTCGAA
Found at i:22286303 original size:26 final size:26
Alignment explanation
Indices: 22286273--22286324 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
22286263 AGCATGGCCG
22286273 AACCCTAGCTTCAATAATGGCTTCTT
1 AACCCTAGCTTCAATAATGGCTTCTT
22286299 AACCCTAGCTTCAATAATGGCTTCTT
1 AACCCTAGCTTCAATAATGGCTTCTT
22286325 TCTCTTCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
AACCCTAGCTTCAATAATGGCTTCTT
Found at i:22290689 original size:24 final size:24
Alignment explanation
Indices: 22290653--22290781 Score: 197
Period size: 24 Copynumber: 5.4 Consensus size: 24
22290643 CTGGAGGCCT
*
22290653 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
22290678 AGCCCTTTTAATAACTGGGCCATA
1 AGCCCTTTTAATAACTGGGGCATA
22290702 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
22290725 AGCCCTTTTGATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
22290749 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
22290773 AGCCCTTTT
1 AGCCCTTTT
22290782 TCACTTCCTC
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
23 22 0.23
24 71 0.73
25 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:22290729 original size:47 final size:48
Alignment explanation
Indices: 22290653--22290781 Score: 197
Period size: 47 Copynumber: 2.7 Consensus size: 48
22290643 CTGGAGGCCT
*
22290653 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGCCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCCATA
* * *
22290702 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCCATA
*
22290749 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
22290782 TCACTTCCTC
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
47 43 0.58
48 27 0.36
49 4 0.05
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCCATA
Found at i:22290857 original size:20 final size:20
Alignment explanation
Indices: 22290832--22290896 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
22290822 ATGAATACAG
22290832 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
22290852 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
22290872 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
22290892 CATGT
1 CATGT
22290897 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:22290863 original size:11 final size:11
Alignment explanation
Indices: 22290832--22290885 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
22290822 ATGAATACAG
22290832 CATGTGCATAT
1 CATGTGCATAT
*
22290843 CA--TACATAT
1 CATGTGCATAT
22290852 CATGTGCATAT
1 CATGTGCATAT
* *
22290863 CA--TACATGT
1 CATGTGCATAT
22290872 CATGTGCATAT
1 CATGTGCATAT
22290883 CAT
1 CAT
22290886 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:22296474 original size:35 final size:35
Alignment explanation
Indices: 22296434--22296598 Score: 215
Period size: 35 Copynumber: 4.7 Consensus size: 35
22296424 TCCATGGCAA
*
22296434 AGTTGTGAAACGTAGGTATGGTATCATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
* *
22296469 AGTTGTGAAACGTAAGTATGGTATTAACCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
*
22296504 AGTTGTAAAACGTAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
** * *
22296539 AGTTAAGAAACGTAGGTATGGCATT-TCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTAT-CCATACTG
* * *
22296574 AGTTGTAAAATGTAGGTAAGGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
22296599 TCAATGAGAA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
34 1 0.01
35 111 0.99
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
Found at i:22299024 original size:36 final size:38
Alignment explanation
Indices: 22298945--22299025 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 38
22298935 ATAAAAAAAT
**
22298945 AAGAAAGCCATGCATTTGTACCTTGTTGTTGCCAAAATAA
1 AAGAAAGCCATGCATTCATACC-T-TTGTTGCCAAAATAA
22298985 AAGAAAGCCATGCATTCATACC-TTGTTG-CAAAATAA
1 AAGAAAGCCATGCATTCATACCTTTGTTGCCAAAATAA
22299021 AAGAA
1 AAGAA
22299026 GAAAGAAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
36 13 0.33
37 6 0.15
40 20 0.51
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (38 bp):
AAGAAAGCCATGCATTCATACCTTTGTTGCCAAAATAA
Found at i:22301767 original size:16 final size:16
Alignment explanation
Indices: 22301745--22301812 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
22301735 TTTGGTTCGC
*
22301745 TGTATTGGATTAGACG
1 TGTATTGGATTAGAGG
* *
22301761 CGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
22301777 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22301793 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22301809 TGTA
1 TGTA
22301813 ATAGCAAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.26, C:0.03, G:0.34, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:22302069 original size:18 final size:17
Alignment explanation
Indices: 22302048--22302082 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
22302038 TTATTATTAA
*
22302048 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
22302066 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
22302083 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:22302136 original size:157 final size:156
Alignment explanation
Indices: 22301942--22302250 Score: 573
Period size: 157 Copynumber: 2.0 Consensus size: 156
22301932 CCCTTAACAT
*
22301942 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
22302007 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
22302072 TTTAATAAAATTCTTAATAATTAGCAG
131 -TTAATAAAATTCTTAATAATTAGCAG
*
22302099 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
22302164 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
22302229 TTAATAAAATTCTTAATAATTA
131 TTAATAAAATTCTTAATAATTA
22302251 ATATTCTTAT
Statistics
Matches: 148, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
156 22 0.15
157 126 0.85
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (156 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
TTAATAAAATTCTTAATAATTAGCAG
Found at i:22302222 original size:16 final size:16
Alignment explanation
Indices: 22302185--22302226 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
22302175 TTAATCATAT
*
22302185 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
22302201 TT-AAATATATTATAA
1 TTAAAATATATTATAA
22302216 TTAAAATATAT
1 TTAAAATATAT
22302227 AATTAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:22302229 original size:13 final size:15
Alignment explanation
Indices: 22302194--22302232 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
22302184 TTTAAACATA
*
22302194 ATTATTATTAAATAT
1 ATTATAATTAAATAT
22302209 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
22302223 A-TATAATTAA
1 ATTATAATTAA
22302233 TAAAATTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.39
14 3 0.13
15 11 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:22302352 original size:14 final size:15
Alignment explanation
Indices: 22302303--22302354 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
22302293 ATAAAATATA
22302303 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
22302318 TATTAAATATATTAT
1 AATTAAATATATTAT
22302333 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
22302346 AATTTAATA
1 AATTAAATA
22302355 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:22302400 original size:120 final size:120
Alignment explanation
Indices: 22302188--22302701 Score: 910
Period size: 120 Copynumber: 4.3 Consensus size: 120
22302178 ATCATATTTA
22302188 AACATAATTATTATTAAATATATTATAATTAAAATATATAA-TTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
22302252 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
22302307 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
22302372 TATTTTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
22302427 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
22302492 TATTCTTATATGAATTTATTCTAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
22302547 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
22302612 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAT-ATAAA-TT
* *
22302667 GAA-ATAATTAATATTAAATATATTTTAATTAAAAT
1 -AACATAATTATTATTAAATATATTATAATTAAAAT
22302702 TTATTGTTTA
Statistics
Matches: 381, Mismatches: 10, Indels: 7
0.96 0.03 0.02
Matches are distributed among these distances:
119 48 0.13
120 331 0.87
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:22302463 original size:16 final size:16
Alignment explanation
Indices: 22302423--22302585 Score: 57
Period size: 16 Copynumber: 10.8 Consensus size: 16
22302413 GTAAAATATA
*
22302423 AATTAACATA-ATTAT
1 AATTAAAATATATTAT
*
22302438 TATT-AAATATATTAT
1 AATTAAAATATATTAT
*
22302453 AATTAAAATATATAATTT
1 AATTAAAATATAT--TAT
*
22302471 AA-TAAAAT-TCTTAAT
1 AATTAAAATATATT-AT
* *
22302486 AATTAATAT-TCTTAT
1 AATTAAAATATATTAT
* * *
22302501 -A-T-GAATTTATTCT
1 AATTAAAATATATTAT
* * *
22302514 AATCATAATATATGAT
1 AATTAAAATATATTAT
*
22302530 ACTGT-AAA-ATA-TA-
1 AAT-TAAAATATATTAT
*
22302543 AATTAACATA-ATTAT
1 AATTAAAATATATTAT
*
22302558 TATT-AAATATATTAT
1 AATTAAAATATATTAT
22302573 AATTAAAATATAT
1 AATTAAAATATAT
22302586 AATTTAATAA
Statistics
Matches: 106, Mismatches: 25, Indels: 33
0.65 0.15 0.20
Matches are distributed among these distances:
12 3 0.03
13 10 0.09
14 15 0.14
15 30 0.28
16 38 0.36
17 6 0.06
18 4 0.04
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (16 bp):
AATTAAAATATATTAT
Found at i:22302472 original size:14 final size:15
Alignment explanation
Indices: 22302423--22302594 Score: 69
Period size: 15 Copynumber: 11.6 Consensus size: 15
22302413 GTAAAATATA
22302423 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
22302438 TATTAAATATATTAT
1 AATTAAATATATTAT
*
22302453 AATTAAAATATATAATTT
1 AATT-AAATATAT--TAT
* *
22302471 AATAAAAT-TCTTAAT
1 AATTAAATATATT-AT
*
22302486 AATT-AATATTCTTAT
1 AATTAAATA-TATTAT
* * *
22302501 -A-TGAATTTATTCT
1 AATTAAATATATTAT
* *
22302514 AATCATAATATATGAT
1 AATTA-AATATATTAT
*
22302530 ACTGTAAA-ATA-TA-
1 AAT-TAAATATATTAT
22302543 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
22302558 TATTAAATATATTAT
1 AATTAAATATATTAT
22302573 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
22302586 AATTTAATA
1 AATTAAATA
22302595 AAATTCTTAA
Statistics
Matches: 117, Mismatches: 22, Indels: 37
0.66 0.12 0.21
Matches are distributed among these distances:
12 3 0.03
13 18 0.15
14 23 0.20
15 38 0.32
16 25 0.21
17 5 0.04
18 5 0.04
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:22307181 original size:16 final size:16
Alignment explanation
Indices: 22307156--22307186 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22307146 TATTGATTTC
22307156 ATATTATTCTATGTAA
1 ATATTATTCTATGTAA
*
22307172 ATATTTTTCTATGTA
1 ATATTATTCTATGTA
22307187 TGTATATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (16 bp):
ATATTATTCTATGTAA
Found at i:22307320 original size:17 final size:17
Alignment explanation
Indices: 22307291--22307323 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22307281 TTTCATATAT
*
22307291 TATTATCTTTATGTATG
1 TATTATCTATATGTATG
22307308 TATTATCTATATGTAT
1 TATTATCTATATGTAT
22307324 CATTAATCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (17 bp):
TATTATCTATATGTATG
Found at i:22307661 original size:12 final size:12
Alignment explanation
Indices: 22307644--22307686 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
22307634 TTCTTAGGAT
22307644 TATATTTTATTA
1 TATATTTTATTA
**
22307656 TATATTTT-TGC
1 TATATTTTATTA
22307667 TATATTTTATTA
1 TATATTTTATTA
*
22307679 TGTATTTT
1 TATATTTT
22307687 TGCTATCCTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:22307670 original size:23 final size:23
Alignment explanation
Indices: 22307644--22307692 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
22307634 TTCTTAGGAT
22307644 TATATTTTATTATATATTTTTGC
1 TATATTTTATTATATATTTTTGC
*
22307667 TATATTTTATTATGTATTTTTGC
1 TATATTTTATTATATATTTTTGC
22307690 TAT
1 TAT
22307693 CCTTTCATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.65
Consensus pattern (23 bp):
TATATTTTATTATATATTTTTGC
Found at i:22309131 original size:24 final size:24
Alignment explanation
Indices: 22309099--22309148 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
22309089 ACCAATAATT
22309099 AATTAAATGTCCTGTTATAGTCCA
1 AATTAAATGTCCTGTTATAGTCCA
22309123 AATTAAATGTCCTGTTATAGTCCA
1 AATTAAATGTCCTGTTATAGTCCA
22309147 AA
1 AA
22309149 GCCCAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (24 bp):
AATTAAATGTCCTGTTATAGTCCA
Found at i:22312022 original size:131 final size:128
Alignment explanation
Indices: 22311839--22312225 Score: 427
Period size: 131 Copynumber: 2.9 Consensus size: 128
22311829 TTCACAATTA
* * *
22311839 TTTAAGAATTCTTTAAAATGAAGGCGATATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
1 TTTAAAAATTCTTT-AAACGAAGGCGATATTCGATATTTGGCAATTC-CGGAATCGTGCCCTATC
* *
22311904 ATGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGT
64 GTGTTGGGTTGCAATTTCTCGTTTG-TCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGT
22311969 CT
128 -T
* *
22311971 TTTAATAATTCTTTAAACGAAGGCGATGTTCGATATTTGGCAATTCACGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAACGAAGGCGATATTCGATATTTGGCAATTC-CGGAATCGTGCCCTATCG
* * * * **
22312036 TGCTGGGTTGCAATTTCTCATTTGTTCAAAATAATCAAAGGTCCCTTTTGAATTTCACTTATGTT
65 TGTTGGGTTGCAATTTCTCGTTTG-TCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGTT
* * * ** * *
22312101 TTCTAAAAACTCTTCAAAACAAAGGTAATATTCGATGTTTGGCAATTCGGAGAATCGTGCCCTAT
1 TT-TAAAAATTCTT-TAAACGAAGGCGATATTCGATATTTGGCAATTCCG-GAATCGTGCCCTAT
* * * * *
22312166 CGT-TCTGGGTTTCGATTTC-CTGTTTGTCCAAAATGATCGAAGATTCCTTTAGAATTTCAC
63 CGTGT-TGGGTTGCAATTTCTC-GTTTGT-CAAAATAATCGAAGGTCCCTTTAGAATTTCAC
22312226 TCATACTCTC
Statistics
Matches: 217, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
130 3 0.01
131 114 0.53
132 100 0.46
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (128 bp):
TTTAAAAATTCTTTAAACGAAGGCGATATTCGATATTTGGCAATTCCGGAATCGTGCCCTATCGT
GTTGGGTTGCAATTTCTCGTTTGTCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGTT
Found at i:22320962 original size:64 final size:64
Alignment explanation
Indices: 22320853--22320973 Score: 152
Period size: 64 Copynumber: 1.9 Consensus size: 64
22320843 ATCATTCATT
* * * * * *
22320853 TAGTTAGGAGCACTTGATTCACTTCGATCATGGCATTCTAATTATTTGACATAAGCACCACATC
1 TAGTTAGAAGCACTTGACTCACTTCGAGCATGACATCCTAATTATTTGACACAAGCACCACATC
* * * *
22320917 TAGTTAGAAGCATTTGACTCATTTTGAGCATGACATCCTAATTATTTGGCACAAGCA
1 TAGTTAGAAGCACTTGACTCACTTCGAGCATGACATCCTAATTATTTGACACAAGCA
22320974 TAGATACGGA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
64 47 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.33
Consensus pattern (64 bp):
TAGTTAGAAGCACTTGACTCACTTCGAGCATGACATCCTAATTATTTGACACAAGCACCACATC
Found at i:22324625 original size:130 final size:130
Alignment explanation
Indices: 22324374--22324759 Score: 443
Period size: 131 Copynumber: 2.9 Consensus size: 130
22324364 TTCACTATTA
* * * *
22324374 TTTAAGAATTCTTTAAAACGAAGGCGATATTCGATATTTGGCAATTCGCA-ACATCGTGCCCTAA
1 TTTAAAAATTCTTT-AAACGAAGGCGATATTCGATATTTGGCAATTCACAGA-ATCGTGACCTAT
* * *
22324438 CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGTATTTCACCCATG
64 CGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATG
22324503 TCT
129 T-T
* * *
22324506 TTTAATAATTGTTTAAACGAAGGCGATGTTCGATATTTGGCAATTCACAGAATCGTG-CCTATCG
1 TTTAAAAATTCTTTAAACGAAGGCGATATTCGATATTTGGCAATTCACAGAATCGTGACCTATCG
* * * **
22324570 TTTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCAAAGGTCCCTTTTGAATTTCACTTATGTT
66 TGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGTT
* * ** * * *
22324635 TTCTAAAAACTCTTCAAAACGAAGGTAATATTCGATGTTTGGCAATTCAGAGAATCGTGAGCTAT
1 TT-TAAAAATTCTT-TAAACGAAGGCGATATTCGATATTTGGCAATTCACAGAATCGTGACCTAT
* * * * * * * *
22324700 CGTGCTGGGTTGCGATTTCTTGCTTGTCCAAAATGATCGAAGATTCCTTTAGAATTTCAC
64 CGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCAC
22324760 TCATACTCTC
Statistics
Matches: 216, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
129 3 0.01
130 70 0.32
131 77 0.36
132 66 0.31
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTTTAAACGAAGGCGATATTCGATATTTGGCAATTCACAGAATCGTGACCTATCG
TGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGTT
Found at i:22328689 original size:179 final size:179
Alignment explanation
Indices: 22328389--22328749 Score: 704
Period size: 179 Copynumber: 2.0 Consensus size: 179
22328379 ATTCCAACTT
22328389 CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
1 CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
22328454 TTTGAGCCATCATTGAGGTAATCACAACCGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
66 TTTGAGCCATCATTGAGGTAATCACAACCGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
22328519 ATCTCACCATCTGAGAATTTCAATTCGATATACTTGCTACCACAATTTA
131 ATCTCACCATCTGAGAATTTCAATTCGATATACTTGCTACCACAATTTA
22328568 CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
1 CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
*
22328633 TTTGAGCCATCATTGAGGTAATCACAACTGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
66 TTTGAGCCATCATTGAGGTAATCACAACCGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
*
22328698 ATCTCACCATCTGAGCATTTCAATTCGATATACTTGCTACCACAATTTA
131 ATCTCACCATCTGAGAATTTCAATTCGATATACTTGCTACCACAATTTA
22328747 CAA
1 CAA
22328750 TCACATCATG
Statistics
Matches: 180, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
179 180 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (179 bp):
CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
TTTGAGCCATCATTGAGGTAATCACAACCGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
ATCTCACCATCTGAGAATTTCAATTCGATATACTTGCTACCACAATTTA
Found at i:22334576 original size:22 final size:21
Alignment explanation
Indices: 22334535--22334578 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
22334525 TTACAAAAAA
*
22334535 TATCGATACCATTTTAGTAGG
1 TATCGATACCATTCTAGTAGG
22334556 TATCGATACTCATTGCT-GTAGG
1 TATCGATAC-CATT-CTAGTAGG
22334578 T
1 T
22334579 GAAGTTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 9 0.45
22 10 0.50
23 1 0.05
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (21 bp):
TATCGATACCATTCTAGTAGG
Found at i:22338540 original size:48 final size:47
Alignment explanation
Indices: 22338496--22338624 Score: 195
Period size: 48 Copynumber: 2.7 Consensus size: 47
22338486 CTCATATCGG
*
22338496 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
* *
22338543 TCGCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC-A
* *
22338592 CGCCGATACCATGTCCCAGACATGGTCTTACAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
22338625 GTTATCTCAT
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 1 0.01
48 72 0.97
49 1 0.01
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
Found at i:22342220 original size:15 final size:15
Alignment explanation
Indices: 22342197--22342226 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22342187 TTATCTTTCA
22342197 CATACACATAACTCC
1 CATACACATAACTCC
*
22342212 CATATACATAACTCC
1 CATACACATAACTCC
22342227 TAACTAGGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (15 bp):
CATACACATAACTCC
Found at i:22350180 original size:17 final size:18
Alignment explanation
Indices: 22350144--22350178 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22350134 CCGGCGCCCC
22350144 CTCTCTCCTTTCCTTTTT
1 CTCTCTCCTTTCCTTTTT
*
22350162 CTCTCTCTTTTCCTTTT
1 CTCTCTCCTTTCCTTTT
22350179 CTTTTCTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (18 bp):
CTCTCTCCTTTCCTTTTT
Found at i:22350948 original size:23 final size:21
Alignment explanation
Indices: 22350913--22350984 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
22350903 TTAATTTTAA
*
22350913 AAAATTTGAAATATATATTTG
1 AAAATTTTAAATATATATTTG
* * *
22350934 AAATGTTTTATAATATATTTTTT
1 AAA-ATTTTA-AATATATATTTG
*
22350957 AAAATTTTAAATATATATTCTT
1 AAAATTTTAAATATATATT-TG
22350979 AAAATT
1 AAAATT
22350985 ATTTTTTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
21 12 0.29
22 17 0.40
23 13 0.31
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.50
Consensus pattern (21 bp):
AAAATTTTAAATATATATTTG
Found at i:22350969 original size:21 final size:21
Alignment explanation
Indices: 22350913--22351036 Score: 93
Period size: 21 Copynumber: 6.1 Consensus size: 21
22350903 TTAATTTTAA
* * *
22350913 AAAATTTGAAATATATATTTG
1 AAAATTTTAAATATATTTTTT
*
22350934 AAATGTTTTATAATATATTTTTT
1 AAA-ATTTTA-AATATATTTTTT
*
22350957 AAAATTTTAAATATATATTCTT
1 AAAATTTTAAATATAT-TTTTT
22350979 AAAA--TT--AT-T-TTTTTT
1 AAAATTTTAAATATATTTTTT
22350994 -AAATTTTAAATAT-TATTTTT
1 AAAATTTTAAATATAT-TTTTT
* *
22351014 GAAATTTTAAATATATTGTTT
1 AAAATTTTAAATATATTTTTT
22351035 AA
1 AA
22351037 TAATATAAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
14 3 0.04
15 4 0.05
16 3 0.04
17 1 0.01
18 4 0.05
19 2 0.02
20 7 0.08
21 28 0.34
22 18 0.22
23 13 0.16
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (21 bp):
AAAATTTTAAATATATTTTTT
Found at i:22351019 original size:35 final size:36
Alignment explanation
Indices: 22350951--22351019 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
22350941 TTATAATATA
22350951 TTTTTTAAAATTTTAAATATATATTCTTAAAATTAT
1 TTTTTTAAAATTTTAAATATATATTCTTAAAATTAT
* * *
22350987 TTTTTTTAAATTTTAAATAT-TATTTTTGAAATT
1 TTTTTTAAAATTTTAAATATATATTCTTAAAATT
22351020 TTAAATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 11 0.37
36 19 0.63
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (36 bp):
TTTTTTAAAATTTTAAATATATATTCTTAAAATTAT
Found at i:22351154 original size:10 final size:9
Alignment explanation
Indices: 22351091--22351150 Score: 52
Period size: 10 Copynumber: 6.4 Consensus size: 9
22351081 TTATTATTAG
22351091 TTTTATAATA
1 TTTTA-AATA
22351101 TTTTAAATA
1 TTTTAAATA
22351110 --TTAAATA
1 TTTTAAATA
* *
22351117 TTTTTAATTTG
1 -TTTTAA-ATA
22351128 TTTTATAATA
1 TTTTA-AATA
22351138 TTTTAAATA
1 TTTTAAATA
22351147 TTTT
1 TTTT
22351151 TAAAATATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
7 7 0.17
9 12 0.29
10 20 0.49
11 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTAAATA
Found at i:22351252 original size:30 final size:29
Alignment explanation
Indices: 22351200--22351288 Score: 74
Period size: 30 Copynumber: 2.9 Consensus size: 29
22351190 ATTTTTTTTA
** *
22351200 TAATATTTTAAATGCATATTTTAAATATTTT
1 TAAT-TTTTAAATTAAT-TTTTAAATATTAT
22351231 CTAA-TTTTAAATATAATTTTTATAA-ATTAT
1 -TAATTTTTAAAT-TAATTTTTA-AATATTAT
*
22351261 TAATTTTTAAATTAATTTTAAAGATATT
1 TAATTTTTAAATTAATTTTTAA-ATATT
22351289 CAAAAGTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
28 1 0.02
29 12 0.25
30 28 0.58
31 4 0.08
32 3 0.06
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (29 bp):
TAATTTTTAAATTAATTTTTAAATATTAT
Found at i:22352704 original size:13 final size:14
Alignment explanation
Indices: 22352662--22352706 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
22352652 AATAAATGAT
22352662 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
22352677 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
22352690 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
22352703 TAAA
1 TAAA
22352707 ACAAATAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:22352769 original size:12 final size:12
Alignment explanation
Indices: 22352751--22352784 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
22352741 GAGCAGGGAA
22352751 AGAAAGAAAAAG
1 AGAAAGAAAAAG
*
22352763 GGAAAGAAAAAG
1 AGAAAGAAAAAG
*
22352775 AAAAAGAAAA
1 AGAAAGAAAA
22352785 TTTAGGGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:22354937 original size:31 final size:30
Alignment explanation
Indices: 22354899--22354957 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
22354889 CACCCTTAAA
* * *
22354899 ATATTTACACTATTACTCCTTCAACTTTTTC
1 ATATTTACACT-TTAATCCCTCAAATTTTTC
22354930 ATATTTACACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAATCCCTCAAATTTT
22354958 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (30 bp):
ATATTTACACTTTAATCCCTCAAATTTTTC
Found at i:22354967 original size:30 final size:31
Alignment explanation
Indices: 22354899--22354967 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
22354889 CACCCTTAAA
* * *
22354899 ATATTTACACTATTACTCCTTCAACTTTTTC
1 ATATTTACACTATTAATCCCTCAACATTTTC
*
22354930 ATATTTACACT-TTAATCCCTCAA-ATTTTG
1 ATATTTACACTATTAATCCCTCAACATTTTC
22354959 AGTATTTAC
1 A-TATTTAC
22354968 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.15
30 17 0.52
31 11 0.33
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAACATTTTC
Found at i:22355191 original size:18 final size:19
Alignment explanation
Indices: 22355168--22355206 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
22355158 TGGAATTAAG
*
22355168 AATTGAAATGTGA-ATTGA
1 AATTGAAATATGAGATTGA
*
22355186 AATTGAGATATGAGATTGA
1 AATTGAAATATGAGATTGA
22355205 AA
1 AA
22355207 GCTTGAACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (19 bp):
AATTGAAATATGAGATTGA
Found at i:22356599 original size:23 final size:23
Alignment explanation
Indices: 22356573--22356622 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 23
22356563 TGATGTTGGT
22356573 GATATTTTATAATTATTTAATTA
1 GATATTTTATAATTATTTAATTA
*
22356596 GATA----ATAATTATTTATTTA
1 GATATTTTATAATTATTTAATTA
22356615 -ATATTTTA
1 GATATTTTA
22356623 ATAAGATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 9
0.69 0.03 0.28
Matches are distributed among these distances:
18 3 0.14
19 14 0.64
22 1 0.05
23 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
GATATTTTATAATTATTTAATTA
Found at i:22357226 original size:12 final size:12
Alignment explanation
Indices: 22357211--22357236 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22357201 AATTAGAGAA
22357211 TAAATAAAATAT
1 TAAATAAAATAT
22357223 TAAATAAAATAT
1 TAAATAAAATAT
22357235 TA
1 TA
22357237 TTAAGTCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:22361058 original size:30 final size:30
Alignment explanation
Indices: 22361016--22361115 Score: 105
Period size: 30 Copynumber: 3.3 Consensus size: 30
22361006 GGTTGCTCTG
* *
22361016 GGTGAAATGAACTCGAACTG-CCTATGTTC-
1 GGTGATATGAACTCGAACTGTCC-ATGTCCA
22361045 GAGTGATATGAACTCGAACTGTCCATGTCCA
1 G-GTGATATGAACTCGAACTGTCCATGTCCA
** * * *
22361076 GGTGATATGAACTTAAACCGCCCATGTCTA
1 GGTGATATGAACTCGAACTGTCCATGTCCA
22361106 GGTGATATGA
1 GGTGATATGA
22361116 CCTGCTCTGC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
29 1 0.02
30 57 0.93
31 3 0.05
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (30 bp):
GGTGATATGAACTCGAACTGTCCATGTCCA
Found at i:22364085 original size:22 final size:21
Alignment explanation
Indices: 22364058--22364109 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
22364048 AAATATTTAA
*
22364058 ATATTTTATATTATTAAAAAAT
1 ATATTTTAAATT-TTAAAAAAT
*
22364080 ATATTTAAAATTTTAAAAAAT
1 ATATTTTAAATTTTAAAAAAT
22364101 A-ATTTTAAA
1 ATATTTTAAA
22364110 AATATATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 7 0.26
21 10 0.37
22 10 0.37
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATATTTTAAATTTTAAAAAAT
Found at i:22364095 original size:21 final size:21
Alignment explanation
Indices: 22364071--22364144 Score: 65
Period size: 21 Copynumber: 3.9 Consensus size: 21
22364061 TTTTATATTA
22364071 TTAAAAAATATATTTAAAATT
1 TTAAAAAATATATTTAAAATT
22364092 TTAAAAAATA-A--T----TT
1 TTAAAAAATATATTTAAAATT
* *
22364106 TAAAAATATATATTTAAAATT
1 TTAAAAAATATATTTAAAATT
22364127 TT-AAAAATATATTATAAA
1 TTAAAAAATATATT-TAAA
22364145 GCATTTCAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
14 10 0.24
15 1 0.02
17 1 0.02
18 1 0.02
20 11 0.27
21 17 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAAAAAATATATTTAAAATT
Found at i:22364150 original size:23 final size:22
Alignment explanation
Indices: 22364101--22364158 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
22364091 TTTAAAAAAT
*
22364101 AATTTTAAAAATATATATTTAA
1 AATTTTAAAAATATATATATAA
22364123 AATTTTAAAAATATAT-TATAA
1 AATTTTAAAAATATATATATAA
*
22364144 AGCATTTCAAAAATA
1 A--ATTTTAAAAATA
22364159 AATTTCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 5 0.16
22 16 0.50
23 11 0.34
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTTTAAAAATATATATATAA
Found at i:22366004 original size:27 final size:26
Alignment explanation
Indices: 22365967--22366081 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
22365957 AGCATGGCTG
* *
22365967 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
22365993 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
22366021 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
22366048 CCAGATCAGATATTTGGGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
22366075 CCAGAAC
1 CCAGAAC
22366082 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:22366026 original size:54 final size:54
Alignment explanation
Indices: 22365967--22366081 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
22365957 AGCATGGCTG
* *
22365967 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGGGGCAGAGCCA
* * * *
22366021 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGGGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGGGGCAGAGCCA
22366075 CCAGAAC
1 CCAGAAC
22366082 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGGGGCAGAGCCA
Found at i:22367738 original size:26 final size:26
Alignment explanation
Indices: 22367700--22367809 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
22367690 CATGAAATTC
*
22367700 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
22367726 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
22367752 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
* *
22367778 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
22367804 TTATCA
1 TTATCA
22367810 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:22371798 original size:27 final size:26
Alignment explanation
Indices: 22371767--22371854 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 26
22371757 AGCATGGCTG
22371767 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
22371794 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
22371821 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
22371848 CCAGAAC
1 CCAGAAC
22371855 GCTTCCTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 54 0.96
28 2 0.04
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:22373507 original size:26 final size:26
Alignment explanation
Indices: 22373471--22373580 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
22373461 ACATGAAATT
22373471 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
22373497 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
22373523 TTATCATGGAACGTTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
22373549 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
22373575 TTATCA
1 TTATCA
22373581 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 77 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Done.